Query 029472
Match_columns 193
No_of_seqs 117 out of 1024
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pjm_A Ribose-5-phosphate isom 100.0 2.2E-41 7.4E-46 284.5 18.3 159 23-191 4-165 (226)
2 3l7o_A Ribose-5-phosphate isom 100.0 1.4E-41 4.9E-46 285.3 15.8 157 24-189 3-160 (225)
3 1lk5_A D-ribose-5-phosphate is 100.0 7.7E-41 2.7E-45 281.6 18.1 159 23-189 4-164 (229)
4 3kwm_A Ribose-5-phosphate isom 100.0 4.8E-41 1.6E-45 282.0 13.8 154 23-189 10-165 (224)
5 3hhe_A Ribose-5-phosphate isom 100.0 4.6E-40 1.6E-44 280.2 18.5 159 23-189 25-188 (255)
6 2f8m_A Ribose 5-phosphate isom 100.0 2.4E-40 8.2E-45 280.9 16.1 162 21-188 8-175 (244)
7 1m0s_A Ribose-5-phosphate isom 100.0 2.5E-40 8.5E-45 276.9 15.9 153 23-188 4-159 (219)
8 3uw1_A Ribose-5-phosphate isom 100.0 5.2E-40 1.8E-44 277.8 14.2 156 22-190 11-172 (239)
9 1uj6_A Ribose 5-phosphate isom 100.0 6E-39 2E-43 269.8 18.1 158 21-188 5-163 (227)
10 1o8b_A Ribose 5-phosphate isom 100.0 2.8E-40 9.5E-45 276.6 7.2 152 24-188 5-158 (219)
11 4gmk_A Ribose-5-phosphate isom 100.0 2.2E-38 7.5E-43 265.9 18.1 159 22-189 4-163 (228)
12 1xtz_A Ribose-5-phosphate isom 100.0 7.9E-38 2.7E-42 268.1 15.8 160 22-189 19-191 (264)
13 3ixq_A Ribose-5-phosphate isom 100.0 8.3E-37 2.8E-41 256.2 18.2 161 23-192 4-166 (226)
14 1vb5_A Translation initiation 99.4 8.9E-12 3E-16 106.9 13.9 128 24-163 94-236 (276)
15 2w48_A Sorbitol operon regulat 98.1 3.9E-06 1.3E-10 72.1 5.8 84 24-111 91-217 (315)
16 2o0m_A Transcriptional regulat 98.0 1.7E-06 5.8E-11 75.5 2.7 84 24-110 123-247 (345)
17 3ecs_A Translation initiation 98.0 6.1E-05 2.1E-09 65.6 12.0 126 27-164 109-251 (315)
18 3a11_A Translation initiation 97.8 0.00049 1.7E-08 60.4 14.6 127 27-165 129-271 (338)
19 1poi_B Glutaconate coenzyme A- 97.8 6.5E-05 2.2E-09 63.7 8.6 111 28-156 10-161 (260)
20 3d3u_A 4-hydroxybutyrate COA-t 97.7 0.00013 4.4E-09 65.9 8.7 53 23-81 193-245 (439)
21 1t5o_A EIF2BD, translation ini 97.4 0.00091 3.1E-08 59.0 10.9 125 27-165 134-285 (351)
22 2a0u_A Initiation factor 2B; S 97.4 0.00063 2.2E-08 60.7 9.3 127 27-165 157-318 (383)
23 1t9k_A Probable methylthioribo 97.4 0.00081 2.8E-08 59.2 9.8 128 27-166 136-290 (347)
24 2yvk_A Methylthioribose-1-phos 97.4 0.0006 2E-08 60.7 8.9 127 27-165 161-314 (374)
25 3rrl_B Succinyl-COA:3-ketoacid 97.3 6.6E-05 2.3E-09 61.7 2.0 106 26-150 2-143 (207)
26 3rrl_A Succinyl-COA:3-ketoacid 97.1 0.002 7E-08 53.7 8.5 44 30-77 11-57 (235)
27 1k6d_A Acetate COA-transferase 96.9 0.0058 2E-07 50.1 10.0 44 30-77 8-54 (220)
28 3d3u_A 4-hydroxybutyrate COA-t 96.9 0.0015 5.1E-08 58.9 6.7 111 29-150 13-160 (439)
29 3cdk_A Succinyl-COA:3-ketoacid 96.8 0.0023 7.7E-08 53.4 6.3 44 30-77 11-57 (241)
30 3qli_A Coenzyme A transferase; 96.0 0.033 1.1E-06 50.7 9.5 111 30-148 29-182 (455)
31 2g39_A Acetyl-COA hydrolase; c 95.8 0.029 9.9E-07 51.4 8.6 111 29-148 17-166 (497)
32 3gk7_A 4-hydroxybutyrate COA-t 95.8 0.019 6.3E-07 52.2 7.1 108 30-148 14-157 (448)
33 2oas_A ATOA, 4-hydroxybutyrate 95.7 0.036 1.2E-06 49.9 8.4 108 30-148 9-152 (436)
34 3eh7_A 4-hydroxybutyrate COA-t 95.5 0.07 2.4E-06 48.1 9.8 108 30-148 18-161 (434)
35 4eu9_A Succinyl-COA:acetate co 95.5 0.19 6.4E-06 46.0 12.7 112 29-149 16-171 (514)
36 2nvv_A Acetyl-COA hydrolase/tr 95.4 0.041 1.4E-06 50.6 8.1 111 30-148 8-161 (506)
37 2ahu_A Putative enzyme YDIF; C 95.1 0.083 2.8E-06 48.7 9.1 48 30-77 18-70 (531)
38 1w2w_B 5-methylthioribose-1-ph 95.0 0.028 9.4E-07 45.4 5.0 61 98-165 51-113 (191)
39 2hj0_A Putative citrate lyase, 94.6 0.21 7E-06 46.0 10.4 111 30-148 52-209 (519)
40 3nze_A Putative transcriptiona 94.3 0.037 1.2E-06 46.5 4.1 40 31-74 48-87 (267)
41 3kv1_A Transcriptional repress 94.1 0.026 9E-07 47.4 3.0 79 29-111 45-161 (267)
42 2ahu_A Putative enzyme YDIF; C 93.2 0.19 6.5E-06 46.3 7.3 108 26-148 288-418 (531)
43 3efb_A Probable SOR-operon reg 92.8 0.075 2.6E-06 44.4 3.5 31 30-60 51-81 (266)
44 2gnp_A Transcriptional regulat 92.3 0.13 4.4E-06 43.0 4.4 42 29-74 47-88 (266)
45 1xr4_A Putative citrate lyase 92.2 2.8 9.5E-05 38.4 13.5 38 24-61 248-291 (509)
46 1stz_A Heat-inducible transcri 91.8 0.023 7.9E-07 49.5 -0.8 51 20-84 97-148 (338)
47 1poi_A Glutaconate coenzyme A- 91.3 0.17 5.7E-06 43.7 4.1 42 31-76 7-52 (317)
48 2okg_A Central glycolytic gene 90.8 0.13 4.4E-06 42.7 2.8 43 29-74 46-88 (255)
49 1xr4_A Putative citrate lyase 89.7 0.28 9.7E-06 45.0 4.4 114 30-148 49-206 (509)
50 2r5f_A Transcriptional regulat 89.5 0.28 9.4E-06 40.9 3.9 43 29-74 47-91 (264)
51 3k6m_A Succinyl-COA:3-ketoacid 89.5 0.34 1.2E-05 44.2 4.7 43 30-76 7-52 (481)
52 3qli_A Coenzyme A transferase; 85.1 1.1 3.7E-05 40.6 5.3 46 24-75 219-264 (455)
53 2oas_A ATOA, 4-hydroxybutyrate 81.5 1.2 4.1E-05 39.9 4.0 45 24-74 188-232 (436)
54 3eh7_A 4-hydroxybutyrate COA-t 80.8 1.7 5.9E-05 38.9 4.8 47 24-76 197-243 (434)
55 3k6m_A Succinyl-COA:3-ketoacid 80.8 0.99 3.4E-05 41.1 3.3 109 24-150 261-406 (481)
56 3gk7_A 4-hydroxybutyrate COA-t 80.2 1.6 5.6E-05 39.3 4.5 48 23-76 192-239 (448)
57 3fwz_A Inner membrane protein 75.7 12 0.00041 27.1 7.4 49 40-93 8-56 (140)
58 2hj0_A Putative citrate lyase, 64.1 7 0.00024 35.8 4.6 38 24-61 251-294 (519)
59 3c85_A Putative glutathione-re 62.5 29 0.00098 25.9 7.3 50 39-92 39-88 (183)
60 3l9w_A Glutathione-regulated p 58.0 43 0.0015 29.3 8.5 48 40-92 5-52 (413)
61 1fs5_A Glucosamine-6-phosphate 56.6 12 0.0004 30.5 4.4 34 40-73 34-69 (266)
62 2bkx_A Glucosamine-6-phosphate 55.5 8.2 0.00028 30.9 3.2 30 31-60 18-49 (242)
63 1ucr_A Protein DSVD; dissimila 53.6 1.6 5.5E-05 30.3 -1.2 32 22-53 32-63 (78)
64 2ri0_A Glucosamine-6-phosphate 50.5 12 0.00042 29.7 3.5 42 31-74 19-61 (234)
65 3llv_A Exopolyphosphatase-rela 49.9 64 0.0022 22.7 9.2 48 40-92 7-54 (141)
66 1ne7_A Glucosamine-6-phosphate 48.5 25 0.00086 29.1 5.2 20 41-60 35-54 (289)
67 3dfz_A SIRC, precorrin-2 dehyd 47.2 75 0.0026 25.5 7.8 50 37-91 29-80 (223)
68 3mvn_A UDP-N-acetylmuramate:L- 40.8 17 0.00059 27.3 2.7 36 23-60 123-159 (163)
69 4eu9_A Succinyl-COA:acetate co 39.1 53 0.0018 29.7 6.2 36 35-74 258-293 (514)
70 1y89_A DEVB protein; structura 37.8 39 0.0013 27.0 4.6 32 29-60 17-50 (238)
71 2nvv_A Acetyl-COA hydrolase/tr 35.2 31 0.0011 31.3 4.0 49 24-75 226-284 (506)
72 3kkj_A Amine oxidase, flavin-c 34.3 55 0.0019 23.8 4.7 28 41-73 4-31 (336)
73 1id1_A Putative potassium chan 33.6 1.3E+02 0.0044 21.5 7.0 49 39-92 3-55 (153)
74 2g39_A Acetyl-COA hydrolase; c 33.3 36 0.0012 30.8 4.0 48 24-75 231-288 (497)
75 3ix7_A Uncharacterized protein 32.9 1.1E+02 0.0038 22.7 6.1 42 48-95 83-124 (134)
76 1lss_A TRK system potassium up 32.5 1.1E+02 0.0038 20.8 5.9 45 42-91 7-52 (140)
77 3l4b_C TRKA K+ channel protien 31.1 92 0.0032 23.8 5.7 46 42-92 3-49 (218)
78 2g1u_A Hypothetical protein TM 30.7 62 0.0021 23.4 4.4 48 39-91 19-67 (155)
79 1poi_A Glutaconate coenzyme A- 29.1 57 0.0019 27.6 4.4 43 98-148 171-213 (317)
80 3hvz_A Uncharacterized protein 28.8 33 0.0011 23.2 2.3 25 36-60 11-35 (78)
81 2kmm_A Guanosine-3',5'-BIS(dip 27.2 48 0.0016 21.0 2.9 23 37-59 7-29 (73)
82 4gx0_A TRKA domain protein; me 26.7 1.1E+02 0.0037 27.3 6.0 49 39-92 127-176 (565)
83 4df3_A Fibrillarin-like rRNA/T 26.3 1E+02 0.0036 24.7 5.4 41 37-83 75-118 (233)
84 3phh_A Shikimate dehydrogenase 26.2 1.1E+02 0.0037 25.3 5.5 62 39-105 118-179 (269)
85 3i8o_A KH domain-containing pr 25.3 1.5E+02 0.0053 22.2 5.8 27 69-95 106-132 (142)
86 2x8g_A Thioredoxin glutathione 24.9 1.9E+02 0.0066 25.7 7.4 34 38-76 285-318 (598)
87 2vns_A Metalloreductase steap3 24.1 1.4E+02 0.0046 23.0 5.5 61 42-107 31-92 (215)
88 3p9z_A Uroporphyrinogen III co 23.2 1.2E+02 0.0041 23.7 5.0 49 38-92 160-208 (229)
89 3qfa_A Thioredoxin reductase 1 22.1 2.3E+02 0.0079 24.8 7.2 48 39-91 210-268 (519)
90 2ywl_A Thioredoxin reductase r 21.8 83 0.0028 22.9 3.7 30 41-75 3-32 (180)
91 1pdo_A Mannose permease; phosp 21.5 2.3E+02 0.0078 20.3 6.6 53 23-82 42-99 (135)
92 2hmt_A YUAA protein; RCK, KTN, 21.3 1.4E+02 0.0047 20.4 4.7 47 40-91 7-53 (144)
93 1vp8_A Hypothetical protein AF 21.3 2E+02 0.0069 23.1 5.9 65 21-93 27-104 (201)
94 3two_A Mannitol dehydrogenase; 21.1 3.1E+02 0.011 22.4 7.5 67 36-108 173-244 (348)
95 1kol_A Formaldehyde dehydrogen 20.6 3.7E+02 0.013 22.4 9.3 68 36-107 182-263 (398)
96 2aee_A OPRT, oprtase, orotate 20.3 1.3E+02 0.0046 23.2 4.8 48 45-96 127-178 (211)
No 1
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=2.2e-41 Score=284.47 Aligned_cols=159 Identities=31% Similarity=0.439 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFA 102 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~a 102 (193)
++.|+.||++|++||++||+||||+|||+.+++++|+++.+.+.+ ++|+||||+.++.+|.++|++++.+.++ .+|++
T Consensus 4 ~~~K~~iA~~A~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l-~itvVtnS~~~a~~l~~~gi~v~~l~~~-~iD~a 81 (226)
T 2pjm_A 4 EDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEY-DVDIA 81 (226)
T ss_dssp HHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTC-CCSEE
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCC-cEEEEeCcHHHHHHHHhcCCeEEeeccc-cCCEE
Confidence 455555669999999999999999999999999999876332223 8999999999999999999999999997 59999
Q ss_pred EeccccccCCC-cceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC--CcccEEEecCCHHHHHHHHHhhc
Q 029472 103 FDDADIIEEGT-LVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEEIDDLF 179 (193)
Q Consensus 103 f~gadgvd~~~-~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~--~~~pvEv~p~~~~~~~~~l~~~~ 179 (193)
|+|||+||+ + ++++||+|+ ++++||+++++|+++|+|||+|||+++|| +|+||||.|++|.+++++|+++
T Consensus 82 fdGaDevd~-~t~~likGgg~-----al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~lPvEV~p~a~~~v~~~l~~~- 154 (226)
T 2pjm_A 82 FDGADEVEE-TTLFLIKGGGG-----CHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEM- 154 (226)
T ss_dssp EECCSEEET-TTCCEECCTTS-----CHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEECGGGHHHHHHHHHHT-
T ss_pred EEcCceecc-ccCceeeccch-----hhHHHHHHHHHhCcEEEEEecchhhhccCCCCCEEEEEehhHHHHHHHHHHHc-
Confidence 999999999 8 999999999 99999999999999999999999999999 7999999999999999999997
Q ss_pred CCCceeEeCCCC
Q 029472 180 IGDAEVFSIPYN 191 (193)
Q Consensus 180 ~g~~~~~R~~~~ 191 (193)
|+.+.||+..+
T Consensus 155 -g~~~~lR~~~~ 165 (226)
T 2pjm_A 155 -GGEAVIRLGDR 165 (226)
T ss_dssp -TCEEEECBCSS
T ss_pred -CCceEEeecCC
Confidence 88999998644
No 2
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=1.4e-41 Score=285.31 Aligned_cols=157 Identities=26% Similarity=0.410 Sum_probs=144.3
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEE
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAF 103 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af 103 (193)
+.|++||++|++||++||+||||+|||+.+++++|.++.+.+.+ ++|+||||..++.+|.++|++++.+++..++|+||
T Consensus 3 ~~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~-~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a~ 81 (225)
T 3l7o_A 3 ELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVTV 81 (225)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCC-CEEEEcCCHHHHHHHhccCceEEecCcccccCEEE
Confidence 45556669999999999999999999999999999976443333 89999999999999999999999998877999999
Q ss_pred eccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcCCC
Q 029472 104 DDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIGD 182 (193)
Q Consensus 104 ~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~g~ 182 (193)
+|||+||+ +++++||+|+ ++++||+++++|+++|+|||+|||+++|| .|+||||.|++|.+++++|+++ |+
T Consensus 82 dGADevd~-~~~liKGgG~-----al~rEKiva~~A~~~iviaD~sK~~~~Lg~~plPvEV~p~a~~~v~~~l~~l--G~ 153 (225)
T 3l7o_A 82 DGADEVDP-NFNGIKGGGG-----ALLMEKIVGTLTKDYIWVVDESKMVDTLGAFRLPVEVVQYGAERLFREFEKK--GY 153 (225)
T ss_dssp ECCSEECT-TSCEECCTTS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHHT--TC
T ss_pred EcCCccCc-ccCeecCchh-----hhHHHHHHHHhCCeEEEEEecccchhhcCCCCEEEEEehhHHHHHHHHHHHc--CC
Confidence 99999999 6999999999 99999999999999999999999999998 6899999999999999999997 99
Q ss_pred ceeEeCC
Q 029472 183 AEVFSIP 189 (193)
Q Consensus 183 ~~~~R~~ 189 (193)
.+.||+.
T Consensus 154 ~~~lR~~ 160 (225)
T 3l7o_A 154 KPSFREY 160 (225)
T ss_dssp CEEECEE
T ss_pred ceEEEEc
Confidence 9999984
No 3
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=7.7e-41 Score=281.63 Aligned_cols=159 Identities=27% Similarity=0.455 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFA 102 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~a 102 (193)
.+.|++||++|+++|+|||+||||+|||+.+++++|+++.+.+.++++|+||||+.++.+|..++++++.++.++++|+|
T Consensus 4 ~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~D~a 83 (229)
T 1lk5_A 4 EEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVA 83 (229)
T ss_dssp HHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccCCEE
Confidence 44555566999999999999999999999999999986422111227999999999999998889999998876699999
Q ss_pred EeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC--CcccEEEecCCHHHHHHHHHhhcC
Q 029472 103 FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEEIDDLFI 180 (193)
Q Consensus 103 f~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~--~~~pvEv~p~~~~~~~~~l~~~~~ 180 (193)
|+|||+||+ ++++++|+|. +.++||+++++|+++|+|||||||++.|| .|+||||.|++|.+++++|+++
T Consensus 84 f~Gadgid~-~~g~~~~~~~-----a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvEV~p~~~~~v~~~l~~l-- 155 (229)
T 1lk5_A 84 VDGADEVDP-NLNLIKGRGA-----ALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIF-- 155 (229)
T ss_dssp EECCSEECT-TCCEECCTTS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSTTSSCCEEEEECGGGHHHHHHHGGGG--
T ss_pred EECCCeECC-CCCeecCHHH-----HHHHHHHHHHhcCCeEEEEchhhhhhhcCCCCCEEEEECcchHHHHHHHHHHc--
Confidence 999999999 6889887776 99999999889999999999999999999 5899999999999999999997
Q ss_pred CCceeEeCC
Q 029472 181 GDAEVFSIP 189 (193)
Q Consensus 181 g~~~~~R~~ 189 (193)
|+.+.||+.
T Consensus 156 g~~~~~R~~ 164 (229)
T 1lk5_A 156 NAKAELRMG 164 (229)
T ss_dssp TCEEEECBC
T ss_pred CCCeEEeec
Confidence 899999984
No 4
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=4.8e-41 Score=282.00 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEE-EcCcHHHHHHHHHCCCcEEEcCCCCcccE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG-IPTSVASANEAAVAGIPLDQYRDTSQIDF 101 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTV-VTnSl~ia~~l~~~~i~v~~l~~~~~~D~ 101 (193)
++.|++||++|+++|++||+|+||+|||+.+++++|.++. +++|+ ||||..++.++.++|++++.+++.+++|+
T Consensus 10 ~~~K~~iA~~A~~~V~~g~~IglgsGST~~~~i~~L~~~~-----~~itv~VtnS~~~a~~l~~~gi~l~~l~~~~~iD~ 84 (224)
T 3kwm_A 10 DELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYR-----DKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDL 84 (224)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHHGGGCT-----TTEEEEEESCHHHHHHHHHTTCCBCCHHHHCSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhc-----CceEEEECCcHHHHHHHHHcCCeEEecCccccccE
Confidence 4555566699999999999999999999999999998741 38999 99999999999999999999988669999
Q ss_pred EEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcC
Q 029472 102 AFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFI 180 (193)
Q Consensus 102 af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~ 180 (193)
||+|||+||+ +++++||+|+ ++++||+++++|+++|+|+|+|||+++|| +|+||||.|++|.+++++|+++
T Consensus 85 afdGADevd~-~~~liKGgg~-----al~rEKiva~~A~~~iviaD~sK~~~~Lg~~plPvEV~p~a~~~v~~~l~~l-- 156 (224)
T 3kwm_A 85 YIDGADECNN-HKELIKGGGA-----ALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKL-- 156 (224)
T ss_dssp EEECCSEECT-TSCEECCSSS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSBCSSCEEEEECGGGHHHHHHHHHHT--
T ss_pred EEECCCcccc-ccCeecCchh-----hHHHHHHHHHhcCcEEEEEeCchhhhhcCCCCeEEEEChHHHHHHHHHHHHc--
Confidence 9999999999 6999999999 99999999999999999999999999998 7899999999999999999997
Q ss_pred CCceeEeCC
Q 029472 181 GDAEVFSIP 189 (193)
Q Consensus 181 g~~~~~R~~ 189 (193)
|+.+.||++
T Consensus 157 g~~~~lR~~ 165 (224)
T 3kwm_A 157 GGQPVYREQ 165 (224)
T ss_dssp TCEEEECTT
T ss_pred CCCeEEecC
Confidence 889999973
No 5
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=4.6e-40 Score=280.23 Aligned_cols=159 Identities=21% Similarity=0.341 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFA 102 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~a 102 (193)
++.|++||++|++||++||+|+||+|||+.+++++|.++.+.| + ++|+||||+.++.+|.+.|++++.++++.++|+|
T Consensus 25 ~e~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~g-l-~ItvVttS~~ta~~l~~~GI~l~~l~~~~~iD~a 102 (255)
T 3hhe_A 25 QQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANG-L-RVTCVATSQYSEQLCHKFGVPISTLEKIPELDLD 102 (255)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEECCSHHHHHHHHHHHHHHHTT-C-CEEEEESSHHHHHHHHHTTCCBCCTTTCCSBSEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhccC-C-cEEEEcCCHHHHHHHHHcCCcEEecccccccCEE
Confidence 4556666799999999999999999999999999999764333 3 7999999999999999999999999987789999
Q ss_pred EeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhc--
Q 029472 103 FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLF-- 179 (193)
Q Consensus 103 f~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~-- 179 (193)
|+|||+||+ +++++||+|+ ++++||+++++|+++|+|||+|||+++|| .|+||||.|++|.+++++|+++|
T Consensus 103 fdGADeVD~-~~~lIKGgG~-----al~rEKiva~~A~~~ivIaD~SK~v~~LG~~plPVEViP~a~~~v~~~l~~~~~~ 176 (255)
T 3hhe_A 103 IDGADEIGP-EMTLIKGGGG-----ALLHEKIVASASRAMFVIADETKMVKTLGAFALPIEVNPFGIHATRIAIEKAADN 176 (255)
T ss_dssp EECCSEECG-GGCEECCTTS-----CHHHHHHHHHTBSCEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHHHHHH
T ss_pred EECCCcccc-ccCeeeCchh-----hhHHHHHHHHhcCcEEEEEeCCCChhhhCCCCeEEEEchhHHHHHHHHHHhhhcc
Confidence 999999999 6999999999 99999999999999999999999999998 78999999999999999999953
Q ss_pred --CCCceeEeCC
Q 029472 180 --IGDAEVFSIP 189 (193)
Q Consensus 180 --~g~~~~~R~~ 189 (193)
.|..+.+|+.
T Consensus 177 ~glgg~~~lR~~ 188 (255)
T 3hhe_A 177 LGLSGEITLRMN 188 (255)
T ss_dssp HTCCSCEEECEE
T ss_pred ccCCCeEEEeeC
Confidence 3779999974
No 6
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-40 Score=280.89 Aligned_cols=162 Identities=27% Similarity=0.439 Sum_probs=145.0
Q ss_pred ChHHHHHHHHHHHhh-cCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcc
Q 029472 21 GSSVLFRAAKHTVDT-YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQI 99 (193)
Q Consensus 21 ~~~ekk~iaa~~A~~-~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~ 99 (193)
+.++.|++||++|++ +|+|||+||||+|||+.+++++|.++.+.+.++++|+||||+.++.+|...|++++.++.+.++
T Consensus 8 ~~~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~i 87 (244)
T 2f8m_A 8 HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNI 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCCB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecccCcC
Confidence 455667777799999 9999999999999999999999986532222337999999999999998889999998776689
Q ss_pred cEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCcc-CCCC--CcccEEEecCCHHHHHHHHH
Q 029472 100 DFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK-GVLD--GSVPVLVQPVNWMETAEEID 176 (193)
Q Consensus 100 D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~-~~l~--~~~pvEv~p~~~~~~~~~l~ 176 (193)
|+||+|||+||+ ++++++|+|+ +.++||+++++|+++|+|||+|||+ ++|| +|+||||.|++|.+++++|+
T Consensus 88 D~afdGaDeId~-~~glikg~g~-----Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~~plPvEV~p~a~~~v~~~l~ 161 (244)
T 2f8m_A 88 DITIDGTDEIDL-NLNLIKGRGG-----ALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEILTFGYEKIIENLL 161 (244)
T ss_dssp SEEEECCSEECT-TCCEECCTTS-----CHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCSSCEEEEECSTTHHHHHHHHT
T ss_pred CEEEECCcccCC-CCCcccCHHH-----HHHHHHHHHHhhCcEEEEEECCccccccCCCCCcEEEEEcccHHHHHHHHHH
Confidence 999999999999 6999999877 9999998889999999999999999 9999 69999999999999999999
Q ss_pred hhcC--CCceeEeC
Q 029472 177 DLFI--GDAEVFSI 188 (193)
Q Consensus 177 ~~~~--g~~~~~R~ 188 (193)
++|. |+.+.||+
T Consensus 162 ~l~~~~G~~~~lR~ 175 (244)
T 2f8m_A 162 KIYTLKGCTYKIRK 175 (244)
T ss_dssp TSTTTTTCEEEECE
T ss_pred HHhhccCCceEEEE
Confidence 9876 89999996
No 7
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=2.5e-40 Score=276.91 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEE-EcCcHHHHHHHHHCCCcEEEcCCCCcccE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG-IPTSVASANEAAVAGIPLDQYRDTSQIDF 101 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTV-VTnSl~ia~~l~~~~i~v~~l~~~~~~D~ 101 (193)
.+.|++||++|+++|+|||+||||+|||+.+++++|+++ + .++|+ ||||+.++.+|..++++++.++.++++|+
T Consensus 4 ~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~la~~L~~~-~----~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~D~ 78 (219)
T 1m0s_A 4 LEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI-K----DKIQGAVAASKESEELLRKQGIEVFNANDVSSLDI 78 (219)
T ss_dssp HHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTT-G----GGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhcc-C----CCEEEEECChHHHHHHHHhCCCeEEEeCccccCCE
Confidence 345555669999999999999999999999999999864 1 16999 99999999999888999999887669999
Q ss_pred EEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC--CcccEEEecCCHHHHHHHHHhhc
Q 029472 102 AFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEEIDDLF 179 (193)
Q Consensus 102 af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~--~~~pvEv~p~~~~~~~~~l~~~~ 179 (193)
||+|||+||+ ++++++|++. +.+|||+++++|+++|+|||||||++.|| .|+||||.|++|.+++++|+++
T Consensus 79 af~Gadgid~-~~g~~~~~~~-----a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvEV~p~~~~~v~~~l~~l- 151 (219)
T 1m0s_A 79 YVDGADEINP-QKMMIKGGGA-----ALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAAL- 151 (219)
T ss_dssp EEECCSEECT-TSCEECCTTS-----CHHHHHHHHHHEEEEEEEEEGGGBCSSTTSSSCEEEEECGGGHHHHHHHHHHT-
T ss_pred EEECcCeECC-CCCeecCHHH-----HHHHHHHHHHhcCcEEEEEeCcHHhhccCCCCCEEEEECcchHHHHHHHHHHc-
Confidence 9999999999 6888887666 99999999889999999999999999999 4899999999999999999997
Q ss_pred CCCceeEeC
Q 029472 180 IGDAEVFSI 188 (193)
Q Consensus 180 ~g~~~~~R~ 188 (193)
|+.+.||+
T Consensus 152 -g~~~~~R~ 159 (219)
T 1m0s_A 152 -GGSPEYRE 159 (219)
T ss_dssp -TCEEEECT
T ss_pred -CCCcEeeC
Confidence 89999995
No 8
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=100.00 E-value=5.2e-40 Score=277.79 Aligned_cols=156 Identities=22% Similarity=0.346 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHhhcCCC----CCEEEECcCHHHHHHHHHHHhHhhcCCCCCeE-EEcCcHHHHHHHHHCCCcEEEcCCC
Q 029472 22 SSVLFRAAKHTVDTYITS----GMVVGLGSGQASAMAIEYMGRQLRAGALKDVI-GIPTSVASANEAAVAGIPLDQYRDT 96 (193)
Q Consensus 22 ~~ekk~iaa~~A~~~I~d----g~tI~LdsGsT~~~la~~L~~~~~~~~~~~lT-VVTnSl~ia~~l~~~~i~v~~l~~~ 96 (193)
+++.|+++|++|++||+| |++||||+|||+.+++++|.++. ++++ +||||..++.+|.++|++++.+++.
T Consensus 11 ~~~~K~~aA~~A~~~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~-----~~i~~~V~tS~~t~~~~~~~Gi~l~~l~~~ 85 (239)
T 3uw1_A 11 QDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVK-----DRYRGAVSSSVATTERLKSHGIRVFDLNEI 85 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCEEEECCSHHHHHHHHHHHTTG-----GGSCEEEESSHHHHHHHHHTTCCBCCGGGC
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCEEEECccHHHHHHHHHHHhhh-----ccceEEeCCcHHHHHHHHHcCCcEEecccc
Confidence 456667777999999999 99999999999999999998752 2678 7999999999999999999999887
Q ss_pred CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHH
Q 029472 97 SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEI 175 (193)
Q Consensus 97 ~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l 175 (193)
.++|+||+|||+||+ +++++||||+ ++++||+++.+|+++|+|+|+|||+++|| .|+||||.|++|.+++++|
T Consensus 86 ~~iD~a~DGADeVd~-~l~lIKGgGg-----al~rEKiva~~A~~~ivIaD~sK~v~~Lg~~plPVEViP~a~~~v~~~l 159 (239)
T 3uw1_A 86 ESLQVYVDGADEIDE-SGAMIKGGGG-----ALTREKIVASVAETFVCIADASKRVAMLGQFPLPVEVVPMARTAIGRRL 159 (239)
T ss_dssp SCEEEEEECCSEECT-TCCEECCSSS-----CHHHHHHHHHHEEEEEEEEEGGGBCSSBTSSCEEEEECGGGHHHHHHHH
T ss_pred cccCEEEECCcccCc-ccCEecCchH-----HHHHHHHHHHhCCcEEEEEecchhhhhcCCCCeEEEEChhHHHHHHHHH
Confidence 799999999999999 6999999999 99999999999999999999999999998 6899999999999999999
Q ss_pred HhhcCCCceeEeCCC
Q 029472 176 DDLFIGDAEVFSIPY 190 (193)
Q Consensus 176 ~~~~~g~~~~~R~~~ 190 (193)
+++ |+.+.||++.
T Consensus 160 ~~l--G~~~~lR~~~ 172 (239)
T 3uw1_A 160 AAL--GGVPVLRVKQ 172 (239)
T ss_dssp HHT--TCEEEECBCT
T ss_pred HHc--CCCeEEeecC
Confidence 997 8899999964
No 9
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=6e-39 Score=269.79 Aligned_cols=158 Identities=34% Similarity=0.524 Sum_probs=138.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCccc
Q 029472 21 GSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQID 100 (193)
Q Consensus 21 ~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D 100 (193)
+.++|++ ||++|+++|+|||+||||+|||+.+++++|.++.+.+.++++|+||||+.++.+|..+|++++.+.++ ++|
T Consensus 5 ~~~~K~~-IA~~Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~-~~D 82 (227)
T 1uj6_A 5 LESYKKE-AAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPE-GVD 82 (227)
T ss_dssp THHHHHH-HHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCTT-CEE
T ss_pred hHHHHHH-HHHHHHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEEcCCC-cCC
Confidence 4445555 45999999999999999999999999999986522111223999999999999998889999999884 999
Q ss_pred EEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhc
Q 029472 101 FAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLF 179 (193)
Q Consensus 101 ~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~ 179 (193)
+||+|||+||+ ++.+++|+|+ +.++|+++.+.|+++|+|||||||++.+| .++||||.|++|.+++++|+++
T Consensus 83 ~af~Gadgvd~-~~~~~~~~g~-----a~~kekiva~~a~~~ivlaD~sK~~~~lg~~~lPvEV~p~~~~~v~~~l~~~- 155 (227)
T 1uj6_A 83 LAIDGADEIAP-GLALIKGMGG-----ALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADL- 155 (227)
T ss_dssp EEEECCSEEEG-GGEEECCTTS-----CHHHHHHHHHTEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHTT-
T ss_pred EEEECCCccCc-cccEECCHHH-----HHHHHHHHHhccCCEEEEEEcchhccccCCCceeEEECcCHHHHHHHHHHhh-
Confidence 99999999999 5888888877 99999998655999999999999999998 5899999999999999999997
Q ss_pred CCCceeEeC
Q 029472 180 IGDAEVFSI 188 (193)
Q Consensus 180 ~g~~~~~R~ 188 (193)
|+.+.||+
T Consensus 156 -g~~~~~R~ 163 (227)
T 1uj6_A 156 -GGEPELRM 163 (227)
T ss_dssp -TCCEEECE
T ss_pred -CCCeEEEe
Confidence 89999996
No 10
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=2.8e-40 Score=276.62 Aligned_cols=152 Identities=22% Similarity=0.377 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEE-EcCcHHHHHHHHHCCCcEEEcCCCCcccEE
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIG-IPTSVASANEAAVAGIPLDQYRDTSQIDFA 102 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTV-VTnSl~ia~~l~~~~i~v~~l~~~~~~D~a 102 (193)
+.|++||++|+++|+|||+||||+|||+.+++++|+++ + .++|+ ||||+.++.+|..++++++.++.++++|+|
T Consensus 5 ~~K~~IA~~Aa~lI~dg~~I~LdsGST~~~la~~L~~~-~----~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~D~a 79 (219)
T 1o8b_A 5 ELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM-K----GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIY 79 (219)
T ss_dssp ------------------CEEECCSCC--------------------CCEEESCCC------------CCGGGCSCEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhcc-C----CCEEEEECCcHHHHHHHHhCCCeEEEeCccCcCCEE
Confidence 44555569999999999999999999999999999764 0 16999 999999999998889999998876699999
Q ss_pred EeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcCC
Q 029472 103 FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFIG 181 (193)
Q Consensus 103 f~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~g 181 (193)
|+|||+||+ ++++++|++. +.++||+++++|+++|+|||||||++.|| .|+||||.|++|.+++++|+++ |
T Consensus 80 f~Gadgid~-~~~~~~~~~~-----a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~lPvEV~p~~~~~v~~~l~~l--g 151 (219)
T 1o8b_A 80 VDGADEING-HMQMIKGGGA-----ALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKL--G 151 (219)
T ss_dssp EECCSEECT-TSCEECCCCC------HHHHHHHHHHEEEEEEEEEGGGBCSSBTSSCEEEEECGGGHHHHHHHHHHT--T
T ss_pred EECcceECC-CCCeecCHHH-----HHHHHHHHHHhcCcEEEEEeCcccccccCCCcEEEEEChhHHHHHHHHHHHc--C
Confidence 999999999 6888887777 99999998899999999999999999999 5899999999999999999997 8
Q ss_pred CceeEeC
Q 029472 182 DAEVFSI 188 (193)
Q Consensus 182 ~~~~~R~ 188 (193)
+.+.||+
T Consensus 152 ~~~~~R~ 158 (219)
T 1o8b_A 152 GRPEYRQ 158 (219)
T ss_dssp CEEEECT
T ss_pred CCcEeeC
Confidence 9999995
No 11
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=100.00 E-value=2.2e-38 Score=265.92 Aligned_cols=159 Identities=25% Similarity=0.417 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccE
Q 029472 22 SSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDF 101 (193)
Q Consensus 22 ~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~ 101 (193)
+++.|+++|++|++||++|++|+||+|||+.+++++|.++.+.+.+ +++.|++|..++.++...|+++..+++..++|+
T Consensus 4 qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD~ 82 (228)
T 4gmk_A 4 QDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHIDL 82 (228)
T ss_dssp HHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCccce
Confidence 5678888889999999999999999999999999999976544444 799999999999999999999999988889999
Q ss_pred EEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC-CcccEEEecCCHHHHHHHHHhhcC
Q 029472 102 AFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD-GSVPVLVQPVNWMETAEEIDDLFI 180 (193)
Q Consensus 102 af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~-~~~pvEv~p~~~~~~~~~l~~~~~ 180 (193)
||+|||.||+ +++++||||+ ++++||+++.+|+++|+++|+||++++|| +|+||||.|++|.+++++|.++
T Consensus 83 ~iDGADEvd~-~l~lIKGGGg-----al~rEKivA~~a~~fI~IaD~sK~v~~LG~fplPVEVip~a~~~v~~~l~~l-- 154 (228)
T 4gmk_A 83 TIDGADEISS-DFQGIKGGGA-----ALLYEKIVATKSNKNMWIVDESKMVDDLGQFPLPVEVIPYGSGTVFKRFEEK-- 154 (228)
T ss_dssp EEECCSEECT-TSCEECCTTS-----CHHHHHHHHHHEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHHT--
T ss_pred EeccHHHhhh-chhhhhcchH-----HHHHHHHHHHhhhheEEEeccccccCccCCeeEEEEEehhhHHHHHHHHHHc--
Confidence 9999999999 7999999999 99999999999999999999999999998 6899999999999999999997
Q ss_pred CCceeEeCC
Q 029472 181 GDAEVFSIP 189 (193)
Q Consensus 181 g~~~~~R~~ 189 (193)
|+.+.||+.
T Consensus 155 G~~~~~R~~ 163 (228)
T 4gmk_A 155 GLNPEFRKN 163 (228)
T ss_dssp TCCEEECBC
T ss_pred CCceeeccc
Confidence 999999985
No 12
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-38 Score=268.08 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHhh-cCC--CCCEEEECcCHHHHHHHHHHHhHhhcCCCC----CeEEEcCcHHHHHHHHHCCCcEEEcC
Q 029472 22 SSVLFRAAKHTVDT-YIT--SGMVVGLGSGQASAMAIEYMGRQLRAGALK----DVIGIPTSVASANEAAVAGIPLDQYR 94 (193)
Q Consensus 22 ~~ekk~iaa~~A~~-~I~--dg~tI~LdsGsT~~~la~~L~~~~~~~~~~----~lTVVTnSl~ia~~l~~~~i~v~~l~ 94 (193)
.++|++ ||++|++ +|+ |||+||||+|||+.+++++|.++.+.+.++ ++|+||||+.++.+|...|++++.+.
T Consensus 19 ~~~K~~-IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~a~~l~~~gi~v~~l~ 97 (264)
T 1xtz_A 19 EDAKRA-AAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIE 97 (264)
T ss_dssp CHHHHH-HHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHHHHHHHHTTCEECCTT
T ss_pred HHHHHH-HHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHHHHHHHHCCCeEEEeh
Confidence 345555 5589998 999 999999999999999999998642111110 49999999999999988899999998
Q ss_pred CCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCcc-CCCC--C--cccEEEecCCHH
Q 029472 95 DTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYK-GVLD--G--SVPVLVQPVNWM 169 (193)
Q Consensus 95 ~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~-~~l~--~--~~pvEv~p~~~~ 169 (193)
.+.++|+||+|||+||+ ++++++|+|+ +.++||+++++|+++|+|||+|||+ ++|| . |+||||.|++|.
T Consensus 98 ~~~~iD~afdGADgId~-~~~likg~g~-----A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~~~~plPVEV~p~a~~ 171 (264)
T 1xtz_A 98 QYPRIDIAFDGADEVDE-NLQLIKGGGA-----CLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYV 171 (264)
T ss_dssp TCCSEEEEEECCSEECT-TSCEECCTTS-----CHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSSCCSCEEEEECGGGHH
T ss_pred hcCcCCEEEECCcccCC-CCCeecCHHH-----HHHHHHHHHHhhCcEEEEEEccccccccccccCCCCEeEEEChhHHH
Confidence 76799999999999999 6899999887 9999998889999999999999999 9998 3 899999999999
Q ss_pred HHHHHHHhhcCCC-ceeEeCC
Q 029472 170 ETAEEIDDLFIGD-AEVFSIP 189 (193)
Q Consensus 170 ~~~~~l~~~~~g~-~~~~R~~ 189 (193)
+++++|++.+ |. .+.||+.
T Consensus 172 ~v~~~l~~~~-g~~~~~lR~~ 191 (264)
T 1xtz_A 172 RVKNDLLEQL-HAEKVDIRQG 191 (264)
T ss_dssp HHHHHHHHTS-CCSEEEECEE
T ss_pred HHHHHHHHHc-CCCCceEeec
Confidence 9999995444 66 8999974
No 13
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.3e-37 Score=256.17 Aligned_cols=161 Identities=30% Similarity=0.437 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEE
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFA 102 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~a 102 (193)
++.|+.+|++|++||++|++|+||+|||+.+++++|.++.+.+.+ +++.|+.|..++.++...|+++..+++. .+|+|
T Consensus 4 d~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l-~i~~v~tS~~t~~~a~~~gi~l~~l~~~-~iDl~ 81 (226)
T 3ixq_A 4 EDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEY-DVDIA 81 (226)
T ss_dssp HHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTC-CCSEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCC-eeEeecccHHHHHHHHhcCCCccccccc-cccEE
Confidence 466777779999999999999999999999999999876554334 6999999999999999999999999887 69999
Q ss_pred EeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCCC--CcccEEEecCCHHHHHHHHHhhcC
Q 029472 103 FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLD--GSVPVLVQPVNWMETAEEIDDLFI 180 (193)
Q Consensus 103 f~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l~--~~~pvEv~p~~~~~~~~~l~~~~~ 180 (193)
|+|||.||..+++++||||+ ++++||+++.+|+++|+++|+||++++|| .|+||||.|++|.+++++|.++
T Consensus 82 iDGADEvd~~~l~lIKGGGg-----Al~rEKivA~~a~~~I~I~D~sK~v~~LG~~fplPVEVip~a~~~v~~~l~~l-- 154 (226)
T 3ixq_A 82 FDGADEVEETTLFLIKGGGG-----CHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEM-- 154 (226)
T ss_dssp EECCSEEETTTCCEECCTTS-----CHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEECGGGHHHHHHHHHHT--
T ss_pred EeCcchhccccceEEecchH-----HHHHHHHHHHHhhheEEEeccccchhhcCCCCCccEEEechHHHHHHHHHHHc--
Confidence 99999998425899999999 99999999999999999999999999998 6899999999999999999997
Q ss_pred CCceeEeCCCCC
Q 029472 181 GDAEVFSIPYNR 192 (193)
Q Consensus 181 g~~~~~R~~~~~ 192 (193)
|..+.||+..++
T Consensus 155 G~~~~~R~~~~~ 166 (226)
T 3ixq_A 155 GGEAVIRLGDRK 166 (226)
T ss_dssp TCEEEECBCSSS
T ss_pred CCCceEEeeccC
Confidence 899999986543
No 14
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.36 E-value=8.9e-12 Score=106.89 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhcCCCCCEEE-ECcCHHHHHHHHHHHhHhhcCCCCCeEEEc-C------cHHHHHHHHHCCCcEEEcCC
Q 029472 24 VLFRAAKHTVDTYITSGMVVG-LGSGQASAMAIEYMGRQLRAGALKDVIGIP-T------SVASANEAAVAGIPLDQYRD 95 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~-LdsGsT~~~la~~L~~~~~~~~~~~lTVVT-n------Sl~ia~~l~~~~i~v~~l~~ 95 (193)
+.++.||+.++++|++|++|+ +|.|+|+..+++.+.+. | ++++|++ + +..+|.+|...|+++..+.+
T Consensus 94 ~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~---~--~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli~d 168 (276)
T 1vb5_A 94 EAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKER---K--KRFKVILTESSPDYEGLHLARELEFSGIEFEVITD 168 (276)
T ss_dssp HHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECG
T ss_pred HHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHc---C--CeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEEcH
Confidence 334445699999999999999 99999999999988653 2 4788888 8 88899999989999887643
Q ss_pred C------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC-CCcccEEE
Q 029472 96 T------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL-DGSVPVLV 163 (193)
Q Consensus 96 ~------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l-~~~~pvEv 163 (193)
- .++|++|+|+|+|.. ++++..--|+ ..+. .+..+++..+|++||++||+... |..+|+|-
T Consensus 169 sa~~~~m~~vd~vivGAd~i~~-nG~v~nkiGt-----~~iA-~~A~~~~vp~~V~a~~~K~~~~~~~~~i~iE~ 236 (276)
T 1vb5_A 169 AQMGLFCREASIAIVGADMITK-DGYVVNKAGT-----YLLA-LACHENAIPFYVAAETYKFHPTLKSGDVMLME 236 (276)
T ss_dssp GGHHHHHTTCSEEEECCSEECT-TSCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGBCSSCCGGGCCCCB
T ss_pred HHHHHHHccCCEEEEcccEEec-CCCEeechhH-----HHHH-HHHHHcCCCEEEeccccccCcccCcccccccc
Confidence 1 379999999999998 6766543444 6665 44458899999999999999763 33455443
No 15
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=98.08 E-value=3.9e-06 Score=72.15 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhc----CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc-------------HHHHHHHHH-
Q 029472 24 VLFRAAKHTVDTY----ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS-------------VASANEAAV- 85 (193)
Q Consensus 24 ekk~iaa~~A~~~----I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS-------------l~ia~~l~~- 85 (193)
+|++ +|++|+++ |++|++|+||+|||+..++++|.... ..+++|+||+. ..++..|.+
T Consensus 91 ~k~~-ia~~AA~~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~---~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~ 166 (315)
T 2w48_A 91 QLSA-MGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS---QSRQVICVPIIGGPSGKLESRYHVNTLTYGAAAR 166 (315)
T ss_dssp HHHH-HHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCS---SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhhcccc---CCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHH
Confidence 4554 55889997 99999999999999999999996420 01479999952 356666644
Q ss_pred CCCcEEEc-------------------------CCCCcccEEEeccccccC
Q 029472 86 AGIPLDQY-------------------------RDTSQIDFAFDDADIIEE 111 (193)
Q Consensus 86 ~~i~v~~l-------------------------~~~~~~D~af~gadgvd~ 111 (193)
.+.+...+ ....++|++|+|+.+...
T Consensus 167 ~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg~~~ 217 (315)
T 2w48_A 167 LKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPAI 217 (315)
T ss_dssp TTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBCTTC
T ss_pred HCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCcchh
Confidence 35543321 011369999999986654
No 16
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=98.03 E-value=1.7e-06 Score=75.49 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhc----CCC-CCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc-----------CcHHHHHHHHHC-
Q 029472 24 VLFRAAKHTVDTY----ITS-GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP-----------TSVASANEAAVA- 86 (193)
Q Consensus 24 ekk~iaa~~A~~~----I~d-g~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT-----------nSl~ia~~l~~~- 86 (193)
+|++ +|++|+++ |++ |++|+||+|||+..++++|.... -..+++|+|| |+..++..|.++
T Consensus 123 ~k~~-ia~~AA~~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~ 199 (345)
T 2o0m_A 123 VLSD-FGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLE--TEKRHNLFVPARGGIGEAVSVQANSISAVMANKT 199 (345)
T ss_dssp HHHH-HHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC--CSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc--CCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHh
Confidence 4454 55889886 999 99999999999999999996410 0013799999 888888877543
Q ss_pred CCcEEEc------C--------C----------CCcccEEEecccccc
Q 029472 87 GIPLDQY------R--------D----------TSQIDFAFDDADIIE 110 (193)
Q Consensus 87 ~i~v~~l------~--------~----------~~~~D~af~gadgvd 110 (193)
+++...+ . + ..++|++|+|+.+.+
T Consensus 200 ~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~~ 247 (345)
T 2o0m_A 200 GGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRAL 247 (345)
T ss_dssp TCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHH
T ss_pred CCceEEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCch
Confidence 5443211 0 1 126999999998764
No 17
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=98.00 E-value=6.1e-05 Score=65.64 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEE-cC------cHHHHHHHHHCCCcEEEcCCC--
Q 029472 27 RAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGI-PT------SVASANEAAVAGIPLDQYRDT-- 96 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVV-Tn------Sl~ia~~l~~~~i~v~~l~~~-- 96 (193)
+.|++.++++|++|++|.- +.+.|+..+.+...+. | ++++|+ +- ....|.+|.+.|+++..+.+-
T Consensus 109 ~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Dsa~ 183 (315)
T 3ecs_A 109 NKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAA---K--KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAV 183 (315)
T ss_dssp HHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTT---T--CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGGH
T ss_pred HHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHc---C--CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehhHH
Confidence 3456899999999998876 7778888887766542 2 355555 22 345677888999998765431
Q ss_pred ----CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--C-CcccEEEe
Q 029472 97 ----SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--D-GSVPVLVQ 164 (193)
Q Consensus 97 ----~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~-~~~pvEv~ 164 (193)
..+|++|+|+|.|.. ++++..--|+ ..+- .+.-.+...+|++|+.+||.... + ..+|.|..
T Consensus 184 ~~~m~~vd~VivGAd~i~~-nG~v~nkiGT-----~~iA-l~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~ 251 (315)
T 3ecs_A 184 GYIMEKADLVIVGAEGVVE-NGGIINKIGT-----NQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFK 251 (315)
T ss_dssp HHHGGGCSEEEEECSEECT-TSCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGT
T ss_pred HHHHHhCCEEEECceEEec-CCCeeehhhh-----HHHH-HHHHHhCCCEEEEeccccccccCCCCcccCCcccc
Confidence 269999999999998 6776654444 3332 22234567899999999998753 2 34565543
No 18
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=97.82 E-value=0.00049 Score=60.38 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=88.3
Q ss_pred HHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEE-EcC------cHHHHHHHHHCCCcEEEcCC---
Q 029472 27 RAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIG-IPT------SVASANEAAVAGIPLDQYRD--- 95 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTV-VTn------Sl~ia~~l~~~~i~v~~l~~--- 95 (193)
+.|++.++++|++|++|.- +-+.|++.+.+...+. | ++++| |+- .-.+|.+|.+.|+++..+.+
T Consensus 129 ~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~---g--k~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~ 203 (338)
T 3a11_A 129 ERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQ---G--KDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAA 203 (338)
T ss_dssp HHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHT---T--CCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGT
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHC---C--CeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHH
Confidence 4466999999999998885 6678888888776543 2 23444 333 23567788999998776432
Q ss_pred ---CCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcccEEEec
Q 029472 96 ---TSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSVPVLVQP 165 (193)
Q Consensus 96 ---~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~pvEv~p 165 (193)
+..+|++|+|||.|-. ++++..--|+ ..+- .+.-.+..-+|++|..+||.... |..+|+|--+
T Consensus 204 ~~~M~~Vd~VivGAd~V~a-nG~v~NKiGT-----~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~ 271 (338)
T 3a11_A 204 RHYMKMTDKVVMGADSITV-NGAVINKIGT-----ALIA-LTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRD 271 (338)
T ss_dssp TTTGGGCSEEEECCSEECT-TSCEEEETTH-----HHHH-HHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCC
T ss_pred HHHHHhCCEEEECccEEec-CCCEeecccH-----HHHH-HHHHHcCCCEEEecccceecccCCCCcccccccCC
Confidence 1379999999999998 6776554444 3332 22224456899999999999754 5567776544
No 19
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=97.81 E-value=6.5e-05 Score=63.72 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH------------HHHHCCCcEE----
Q 029472 28 AAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN------------EAAVAGIPLD---- 91 (193)
Q Consensus 28 iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~------------~l~~~~i~v~---- 91 (193)
++|+.|++.|+||+++.+|.| .-...+.++++.. .+++++.|.+-.+-. -+. .+...+
T Consensus 10 ~Ia~~aA~~i~dG~~v~lGiG-iP~~va~~~~~~~----~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~-~~a~~~~~~~ 83 (260)
T 1poi_B 10 MQAVTIAKQIKNGQVVTVGTG-LPLIGASVAKRVY----APDCHIIVESGLMDCSPVEVPRSVGDLRFM-AHCGCIWPNV 83 (260)
T ss_dssp HHHHHHHTTCCTTCEEECCSS-HHHHHHHHHHHTT----CTTCEEEETTTEEEECCSSCCSSTTCHHHH-TSEEEECCHH
T ss_pred HHHHHHHHhCCCCCEEEeCCC-HHHHHHHHHHHhc----CCCEEEEEeCceecCcccCcccCccCCCcE-eehhhhcCHH
Confidence 555899999999999999999 7777888887521 158888885421100 000 000001
Q ss_pred ----E-----cCCCCcccEEEeccccccCCCcc--------------eecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 92 ----Q-----YRDTSQIDFAFDDADIIEEGTLV--------------AVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 92 ----~-----l~~~~~~D~af~gadgvd~~~~~--------------~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
+ +.+ .++|++|+|+..||. .++ .+.|.|| +. -+ ...|+++|++ +|
T Consensus 84 ~~fd~~~~~~~~~-g~~Dv~ilGa~qVD~-~Gnvn~s~iG~~~~p~~~~~G~GG-----a~---D~-~~~A~~~iv~-~h 151 (260)
T 1poi_B 84 RFVGFEINEYLHK-ANRLIAFIGGAQIDP-YGNVNSTSIGDYHHPKTRFTGSGG-----AN---GI-ATYSNTIIMM-QH 151 (260)
T ss_dssp HHHHHHHHHHHHT-CCCEEEEECCSEECT-TCCEECSEEECSSSEEEECCCCTT-----HH---HH-HHHSCEEEEC-CC
T ss_pred HHhcccchhhhhc-CCccEEEeChHHhCC-CCCccccccCCcCCCceEeecccc-----hH---HH-HhCCCEEEEE-EC
Confidence 1 122 268999999999998 453 2345555 22 22 4788899988 98
Q ss_pred C--CccCCCC
Q 029472 149 N--QYKGVLD 156 (193)
Q Consensus 149 S--Kf~~~l~ 156 (193)
+ ||+++..
T Consensus 152 ~~rk~V~~v~ 161 (260)
T 1poi_B 152 EKRRFMNKID 161 (260)
T ss_dssp CTTTBCSSCS
T ss_pred CCCeecccCc
Confidence 7 8887553
No 20
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.67 E-value=0.00013 Score=65.87 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN 81 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~ 81 (193)
.+.++.||+.|+++|+||+++.+|.|++...++.+|.++ +++++.|.-+....
T Consensus 193 ~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~te~~~~~~ 245 (439)
T 3d3u_A 193 SDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGH------KDLGIHTEMFTDGV 245 (439)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHTTTTC------CSBEEECSCBCHHH
T ss_pred ChHHHHHHHHHHHhcCCCCEEEeccchHHHHHHHHHhhC------CCceEEEEEecchh
Confidence 345555669999999999999999999999999999864 58999998655544
No 21
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=97.45 E-value=0.00091 Score=58.99 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCCCCCEEEEC----------cCHHHHHHHHHHHhHhhcCCCCCeEEE-cCc------H-HHHHHHHHCCC
Q 029472 27 RAAKHTVDTYITSGMVVGLG----------SGQASAMAIEYMGRQLRAGALKDVIGI-PTS------V-ASANEAAVAGI 88 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Ld----------sGsT~~~la~~L~~~~~~~~~~~lTVV-TnS------l-~ia~~l~~~~i 88 (193)
+.|++.++++|++|++|.-= .| |++.+.+...++ | ++++|+ +-| . .+|.+|.+.|+
T Consensus 134 ~~I~~~g~~~I~~g~~ILThcnsg~lat~g~g-tal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~GI 207 (351)
T 1t5o_A 134 RKMGEYGAELLEDGDVVLTYCNAGRLATVDWG-TALGVVRSAVEQ---G--KEIRVIACETRPLNQGSRLTCWELMEDGI 207 (351)
T ss_dssp HHHHHHHHTTCCTTCEEEECSCCSSSSSSSSC-SHHHHHHHHHHT---T--CCCEEEEECCTTTTHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCEEEEecCCccccccCCC-hHHHHHHHHHHC---C--CEEEEEEeCCCcccccHHHHHHHHHhCCC
Confidence 34668999999999999872 34 677776666543 2 234443 322 1 35778889999
Q ss_pred cEEEcCCC--------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCC-CCCcc
Q 029472 89 PLDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGV-LDGSV 159 (193)
Q Consensus 89 ~v~~l~~~--------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~-l~~~~ 159 (193)
++..+.+- ..+|++|+|||.|-. ++ +..--|+ ..+- .+.-.+..-+|++|..+||... .|..+
T Consensus 208 ~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~a-NG-v~NKiGT-----~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~g~~i 279 (351)
T 1t5o_A 208 DVTLITDSMVGIVMQKGMVDKVIVGADRIVR-DA-VFNKIGT-----YTVS-VVAKHHNIPFYVAAPKATFDWERTAKDV 279 (351)
T ss_dssp CEEEECGGGHHHHHHTTCCSEEEECCSEEET-TE-EEEETTH-----HHHH-HHHHHTTCCEEEECCGGGBCTTCCGGGC
T ss_pred CEEEEehhHHHHHhhcCCCCEEEECccchhh-cC-cccccCH-----HHHH-HHHHHcCCCEEEeCccceeccccCCCcc
Confidence 88765321 139999999999998 67 6543444 3332 2222445689999999999865 33557
Q ss_pred cEEEec
Q 029472 160 PVLVQP 165 (193)
Q Consensus 160 pvEv~p 165 (193)
|+|--+
T Consensus 280 ~iEer~ 285 (351)
T 1t5o_A 280 VIEERP 285 (351)
T ss_dssp CCCBCC
T ss_pred ccccCC
Confidence 777543
No 22
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=97.39 E-value=0.00063 Score=60.68 Aligned_cols=127 Identities=13% Similarity=-0.031 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCC--------CCCEEEECc--C-------HHHHHHHHHHHhHhhcCCCCCeEEE-cC------cH-HHHH
Q 029472 27 RAAKHTVDTYIT--------SGMVVGLGS--G-------QASAMAIEYMGRQLRAGALKDVIGI-PT------SV-ASAN 81 (193)
Q Consensus 27 ~iaa~~A~~~I~--------dg~tI~Lds--G-------sT~~~la~~L~~~~~~~~~~~lTVV-Tn------Sl-~ia~ 81 (193)
+.|++.++++|+ +|++|.-=+ | .|++.+.+...++ | ++++|+ +- .. .+|.
T Consensus 157 ~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qGarltA~ 231 (383)
T 2a0u_A 157 EGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD---G--KLERVYACETRPWNQGARLTVY 231 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHT---T--CEEEEEEECCTTTTHHHHTHHH
T ss_pred HHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHc---C--CeEEEEEeCCCCccchHHHHHH
Confidence 335689999999 999988622 1 3777777766543 2 245554 22 22 3677
Q ss_pred HHHHCCCcEEEcCCC------C--cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccC
Q 029472 82 EAAVAGIPLDQYRDT------S--QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKG 153 (193)
Q Consensus 82 ~l~~~~i~v~~l~~~------~--~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~ 153 (193)
+|.+.||++..+.+- . .+|++|+|+|.|-. ++++..--|+ ..+- .+.-.+..-+|++|..+||..
T Consensus 232 eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~a-NG~v~NKiGT-----y~lA-l~Ak~~~vPfyV~ap~~k~d~ 304 (383)
T 2a0u_A 232 ECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQ-NGDTANKIGT-----YNLA-VSAKFHGVKLYVAAPTTTLDV 304 (383)
T ss_dssp HHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECT-TCCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGBCT
T ss_pred HHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEec-CCCEeecccH-----HHHH-HHHHHcCCCEEEeCCcceecC
Confidence 889999998765331 1 39999999999998 6766544444 3332 222244568999999999997
Q ss_pred CC--CCcccEEEec
Q 029472 154 VL--DGSVPVLVQP 165 (193)
Q Consensus 154 ~l--~~~~pvEv~p 165 (193)
.. |..+|+|--+
T Consensus 305 ~~~~g~~i~iEer~ 318 (383)
T 2a0u_A 305 KTASGNHVEIEERE 318 (383)
T ss_dssp TCCSGGGSCCCBCC
T ss_pred cCCCccccccccCC
Confidence 54 5678887654
No 23
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=97.39 E-value=0.00081 Score=59.23 Aligned_cols=128 Identities=13% Similarity=0.036 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCCCEEEECc-CH--------HHHHHHHHHHhHhhcCCCCCeEEEc-C------cH-HHHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVGLGS-GQ--------ASAMAIEYMGRQLRAGALKDVIGIP-T------SV-ASANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Lds-Gs--------T~~~la~~L~~~~~~~~~~~lTVVT-n------Sl-~ia~~l~~~~i~ 89 (193)
+.|++.++++|++|++|.-=+ +. |++.+.+...++ | ++++|+- - .. .+|.+|.+.|++
T Consensus 136 ~~I~~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~GI~ 210 (347)
T 1t9k_A 136 KAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLTAWELMKDGIE 210 (347)
T ss_dssp HHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTHHHHHHTTTCE
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---C--CeEEEEEeCCCCccccHHHHHHHHHhCCCC
Confidence 446689999999999988732 22 777777766543 2 2455542 2 11 357788899998
Q ss_pred EEEcCCC--------CcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcc
Q 029472 90 LDQYRDT--------SQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSV 159 (193)
Q Consensus 90 v~~l~~~--------~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~ 159 (193)
+..+.+- ..+|++|+|+|.|-. ++++..--|+ ..+- .+.-.+..-+|++|..+||.... |..+
T Consensus 211 vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~a-NG~v~NKiGT-----~~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~g~~i 283 (347)
T 1t9k_A 211 VYVITDNMAGWLMKRGLIDAVVVGADRIAL-NGDTANKIGT-----YSLA-VLAKRNNIPFYVAAPVSTIDPTIRSGEEI 283 (347)
T ss_dssp EEEECGGGHHHHHHTTCCSEEEECCSEEET-TSCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGS
T ss_pred EEEEehhHHHHHhhcCCCCEEEECccEEec-CCCEEecccH-----HHHH-HHHHHcCCCEEEecccceeccccCCcccc
Confidence 7765321 139999999999998 6766554444 3332 22224456899999999998754 5668
Q ss_pred cEEEecC
Q 029472 160 PVLVQPV 166 (193)
Q Consensus 160 pvEv~p~ 166 (193)
|+|--+.
T Consensus 284 ~iE~r~~ 290 (347)
T 1t9k_A 284 PIEERRP 290 (347)
T ss_dssp CCCBCCT
T ss_pred ccccCCh
Confidence 8776543
No 24
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=97.38 E-value=0.0006 Score=60.68 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=84.6
Q ss_pred HHHHHHHhhcCCCCCEEEEC--cC-------HHHHHHHHHHHhHhhcCCCCCeEEE-cCc------H-HHHHHHHHCCCc
Q 029472 27 RAAKHTVDTYITSGMVVGLG--SG-------QASAMAIEYMGRQLRAGALKDVIGI-PTS------V-ASANEAAVAGIP 89 (193)
Q Consensus 27 ~iaa~~A~~~I~dg~tI~Ld--sG-------sT~~~la~~L~~~~~~~~~~~lTVV-TnS------l-~ia~~l~~~~i~ 89 (193)
+.|++.++++|++|++|.-= +| .|++.+.+...+. | ++++|+ +-| . .+|.+|.+.|++
T Consensus 161 ~~I~~~g~~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rltA~eL~~~GIp 235 (374)
T 2yvk_A 161 RLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---D--LGLHIYACETRPVLQGSRLTAWELMQGGID 235 (374)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---T--CCCEEEEECCTTTTHHHHTHHHHHHTTTCE
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---C--CEEEEEEeCCCCccccHHHHHHHHHHcCCC
Confidence 34668999999999999872 22 3677776666543 2 244443 322 1 357788899998
Q ss_pred EEEcCCC------C--cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcc
Q 029472 90 LDQYRDT------S--QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSV 159 (193)
Q Consensus 90 v~~l~~~------~--~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~ 159 (193)
+..+.+- . .+|++|+|||.|-. ++++..--|+ ..+- -+.-.+..-+|++|..+||.... |..+
T Consensus 236 vtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~a-NG~v~NKiGT-----y~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~g~~i 308 (374)
T 2yvk_A 236 VTLITDSMAAHTMKEKQISAVIVGADRIAK-NGDTANKIGT-----YGLA-ILANAFDIPFFVAAPLSTFDTKVKCGADI 308 (374)
T ss_dssp EEEECGGGHHHHHHHTTCCEEEECCSEEET-TCCEEEETTH-----HHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGS
T ss_pred EEEEehhHHHHHhhhcCCCEEEECccEEec-CCCEEecccH-----HHHH-HHHHHcCCCEEEecccceeCccCCCcccc
Confidence 7765331 1 39999999999998 6766544444 3332 22224456899999999999754 5668
Q ss_pred cEEEec
Q 029472 160 PVLVQP 165 (193)
Q Consensus 160 pvEv~p 165 (193)
|+|--+
T Consensus 309 ~iEer~ 314 (374)
T 2yvk_A 309 PIEERD 314 (374)
T ss_dssp CCCBCC
T ss_pred ccccCC
Confidence 877654
No 25
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=97.33 E-value=6.6e-05 Score=61.72 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH---HHH--------HCCC---cEE
Q 029472 26 FRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN---EAA--------VAGI---PLD 91 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~---~l~--------~~~i---~v~ 91 (193)
|+++|+.|+..|+||+++.||.| .-..++.+++ . +++++.|.+-.+-. -+. +.|- ...
T Consensus 2 r~~Ia~raA~el~dG~~vnlGIG-iP~~va~~~~-~------~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~~~~t~~ 73 (207)
T 3rrl_B 2 REAIIKRAAKELKEGMYVNLGIG-LPTLVANEVS-G------MNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVV 73 (207)
T ss_dssp HHHHHHHHHTTCCTTCEEEECTT-GGGGGGGGGS-S------SCCEEEETTTEEEECCCCCTTCCCTTCBCTTSBBCCEE
T ss_pred hHHHHHHHHHhCCCCCEEEECCC-hHHHHHHhcc-C------CcEEEEeccceecCcCCCCccccCHhHeecCCceeeec
Confidence 45566999999999999999999 4555667775 2 47888887653321 000 0010 111
Q ss_pred ----E---------cCCCCcccEEEeccccccCCCcc---------eecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCC
Q 029472 92 ----Q---------YRDTSQIDFAFDDADIIEEGTLV---------AVIGRQQPKGDESIIQEKSVLNAADKLVFMVSEN 149 (193)
Q Consensus 92 ----~---------l~~~~~~D~af~gadgvd~~~~~---------~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~S 149 (193)
. +++ .++|++|+|+-.||. .++ .+.|.|| +. -+ .+.|+++|++.+|+
T Consensus 74 ~~~~~~~~~~~F~~~~g-G~~Dvailga~qVD~-~Gnvn~~~~~~~~~~G~GG-----a~---d~-~~~A~~vi~~~~~t 142 (207)
T 3rrl_B 74 PGASFFNSADSFAMIRG-GHIDLAILGGMEVSQ-NGDLANWMIPKKLIKGMGG-----AM---DL-VHGAKKVIVIMEHC 142 (207)
T ss_dssp EEEEECCHHHHHHHHHT-TCCSEEEECCSEEET-TSCEECSEETTTEECCCTT-----HH---HH-HHHSSEEEEECCSB
T ss_pred CCceeeCCHHHHHHHhC-CCeeEEEECHHHHCc-CCCccccccCCeeecCccc-----HH---HH-HhCCCEEEEEEeee
Confidence 1 122 279999999999998 453 2444444 22 22 47889999999998
Q ss_pred C
Q 029472 150 Q 150 (193)
Q Consensus 150 K 150 (193)
+
T Consensus 143 ~ 143 (207)
T 3rrl_B 143 N 143 (207)
T ss_dssp C
T ss_pred c
Confidence 4
No 26
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=97.07 E-value=0.002 Score=53.70 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=33.8
Q ss_pred HHHHhhcCCCCCEEEECc--C-HHHHHHHHHHHhHhhcCCCCCeEEEcCcH
Q 029472 30 KHTVDTYITSGMVVGLGS--G-QASAMAIEYMGRQLRAGALKDVIGIPTSV 77 (193)
Q Consensus 30 a~~A~~~I~dg~tI~Lds--G-sT~~~la~~L~~~~~~~~~~~lTVVTnSl 77 (193)
++.|+++|+|||+|++++ + -+-..+.+.|.++ + .++||+++|+.
T Consensus 11 a~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~-~kdLtli~~~~ 57 (235)
T 3rrl_A 11 LDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKK---G-IKDLIVVSNNC 57 (235)
T ss_dssp THHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEECSCC
T ss_pred HHHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhc---C-CCcEEEEEcCC
Confidence 367888999999999986 2 2457788888765 2 36999999963
No 27
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=96.94 E-value=0.0058 Score=50.10 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=34.0
Q ss_pred HHHHhhcCCCCCEEEECcCH---HHHHHHHHHHhHhhcCCCCCeEEEcCcH
Q 029472 30 KHTVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRAGALKDVIGIPTSV 77 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGs---T~~~la~~L~~~~~~~~~~~lTVVTnSl 77 (193)
++.|+++|+|||+|+++..+ +-..+.++|.++ + +++||+++++.
T Consensus 8 a~eAv~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~---~-~~dLtl~~~~~ 54 (220)
T 1k6d_A 8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES---G-VRDLTLIANDT 54 (220)
T ss_dssp HHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEECSBC
T ss_pred HHHHHhhCCCCCEEEECCccccCCHHHHHHHHHHC---C-CCCEEEEEecC
Confidence 47888999999999998642 356777888765 2 36999999864
No 28
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=96.91 E-value=0.0015 Score=58.89 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHHh-hcCCCCCEEEECcCH-HHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH-----HHHHCCCcEE----------
Q 029472 29 AKHTVD-TYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-----EAAVAGIPLD---------- 91 (193)
Q Consensus 29 aa~~A~-~~I~dg~tI~LdsGs-T~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~-----~l~~~~i~v~---------- 91 (193)
-+++|+ ++|+|||+|+++.+. +-..++++|.++.. .+++||++||...... .|. ..+++.
T Consensus 13 sa~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~--~~~dLtli~~~~~~~~~~~~~~l~-~~i~~~~~~~g~~~r~ 89 (439)
T 3d3u_A 13 SADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQRE--KLENITVFHMLYFGDAPHLAPEMR-SHVHPTLNFLEGNSRP 89 (439)
T ss_dssp CHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTT--TCCSEEEECSCBSSCCTTSSGGGT-TTEEEEC---------
T ss_pred cHHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhC--CCCCEEEEEecCCCcchhccHHhC-CcEEEEECCCChHHHH
Confidence 457888 999999999999884 55778888886521 2469999998422110 111 111111
Q ss_pred ----------E---------c-CCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCC
Q 029472 92 ----------Q---------Y-RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQ 150 (193)
Q Consensus 92 ----------~---------l-~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SK 150 (193)
. + .+...+|+||+.+...|. ++++..| . . .... ..++++|+++|+.+++..
T Consensus 90 ~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~-~Gnls~g--~-s---~~~~-~~~~~aA~~VIveVn~~v 160 (439)
T 3d3u_A 90 ASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNE-EGYCSFG--V-S---CDYT-KAAAECAPVVVAEVNKQM 160 (439)
T ss_dssp -----------CCGGGHHHHHTTSSSCCSEEEEEEECCCT-TSEEECT--T-B---CBTH-HHHHHHCSEEEEEEESSS
T ss_pred HHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCC-CceEEEe--c-c---ccch-HHHHhhCCeEEEEECCCC
Confidence 0 1 122379999999999998 5887543 1 1 1122 334588999999999876
No 29
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=96.77 E-value=0.0023 Score=53.43 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHHHhhcCCCCCEEEECcC---HHHHHHHHHHHhHhhcCCCCCeEEEcCcH
Q 029472 30 KHTVDTYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTSV 77 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsG---sT~~~la~~L~~~~~~~~~~~lTVVTnSl 77 (193)
++.|+++|+|||+|+++.- .+-..+.+.|.++ + +++||+++++.
T Consensus 11 a~eAv~~IkdG~tV~~ggf~~~g~P~~li~aL~~~---~-~~dLtl~~~~~ 57 (241)
T 3cdk_A 11 SKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQ---G-VKDLTVVSNNC 57 (241)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEEESSC
T ss_pred HHHHHhhCCCCCEEEECCcCccCcHHHHHHHHHHc---C-CCCEEEEEecC
Confidence 4678889999999999863 2557778888765 2 36999999853
No 30
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=95.97 E-value=0.033 Score=50.69 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=69.9
Q ss_pred HHHHhhcCCCCCEEEECcCH-HHHHHHHHHHhHhhcCCCCCeEEEcCc-HHHH--HHHHH---CCCcEEE----------
Q 029472 30 KHTVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTS-VASA--NEAAV---AGIPLDQ---------- 92 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGs-T~~~la~~L~~~~~~~~~~~lTVVTnS-l~ia--~~l~~---~~i~v~~---------- 92 (193)
+++|+++|++||+|+++++. +-..+.+.|.++...+.++++|+++.. .--. ..+.. ..++...
T Consensus 29 aeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~~~~R~~ 108 (455)
T 3qli_A 29 PEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVTAVERAL 108 (455)
T ss_dssp HHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCCHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCChhHHHH
Confidence 47899999999999999773 336788888876433446799998743 2111 11211 1122111
Q ss_pred --------------------------cCCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEE
Q 029472 93 --------------------------YRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146 (193)
Q Consensus 93 --------------------------l~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLa 146 (193)
+.....+|+||+.+...|. ++++..|... ... ..+++.|+++|+-+
T Consensus 109 i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~-~G~~s~g~s~-----~~~--~~~a~~Ak~VI~EV 180 (455)
T 3qli_A 109 IRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDC-HGYFSLGVGN-----DYS--SRIARSARRFIVEV 180 (455)
T ss_dssp HHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCT-TSEEECTTBC-----BTH--HHHHHHSSEEEEEE
T ss_pred HhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCC-CceEEEccCC-----Cch--HHHHhhcCEEEEEe
Confidence 0111368999999999998 5777643211 122 33457899999988
Q ss_pred eC
Q 029472 147 SE 148 (193)
Q Consensus 147 D~ 148 (193)
+.
T Consensus 181 N~ 182 (455)
T 3qli_A 181 NR 182 (455)
T ss_dssp CT
T ss_pred cC
Confidence 75
No 31
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=95.83 E-value=0.029 Score=51.44 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred HHHHHhhcCCCCCEEEECcCH---HHHHHHHHHHhHhhcCCCCCeEEEcC-cHH--HHHHHHHCC-CcEEE---------
Q 029472 29 AKHTVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRAGALKDVIGIPT-SVA--SANEAAVAG-IPLDQ--------- 92 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~LdsGs---T~~~la~~L~~~~~~~~~~~lTVVTn-Sl~--ia~~l~~~~-i~v~~--------- 92 (193)
-+++|+++|+|||+|+++..+ +-..+.++|.++.+... .++|++++ |.- ....+...+ ++...
T Consensus 17 saeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~d-l~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~~r 95 (497)
T 2g39_A 17 SAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERP-LRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDSTLR 95 (497)
T ss_dssp CHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSC-CCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHHHH
T ss_pred cHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCC-ceEEEEecccccccchHHHhcCCceEEEEeeCCCHHHH
Confidence 347888999999999998532 33456666665432111 14999997 321 111333222 32211
Q ss_pred ----------------------cCCCC-cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 93 ----------------------YRDTS-QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 93 ----------------------l~~~~-~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
..... .+|+||+.+...|. .+++..|.. .. .. ..++++|+++|+-++.
T Consensus 96 ~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe-~Gnls~~~s---~~--~~--~~~a~aA~~VIvEVn~ 166 (497)
T 2g39_A 96 KAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITE-QGHIVPTTS---VG--NS--ASFAIFAKQVIVEINL 166 (497)
T ss_dssp HHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECT-TSCEECCSB---CB--TH--HHHHHHSSEEEEEEET
T ss_pred HHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCC-CceEEEeCC---cc--cH--HHHHHhCCeEEEEEcC
Confidence 01223 58999999999998 587765321 11 11 3345789999999986
No 32
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=95.80 E-value=0.019 Score=52.15 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHhhcCCCCCEEEECcCH-HHHHHHHHHHhHhhcCCCCCeEEEcC-cHHHH----HHHHHCCCcEEE-----------
Q 029472 30 KHTVDTYITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPT-SVASA----NEAAVAGIPLDQ----------- 92 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGs-T~~~la~~L~~~~~~~~~~~lTVVTn-Sl~ia----~~l~~~~i~v~~----------- 92 (193)
+++|+++|++||+|+++.+. +-..+.+.|.++.. .++++++++. |+.-. ..+.. .++...
T Consensus 14 aeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~--~l~~v~l~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~i 90 (448)
T 3gk7_A 14 ADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNVTVSHMVTLGKGEYSKPEYKE-NFTFEGWFTSPSTRGSI 90 (448)
T ss_dssp HHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGG--GCSSEEEEESSCSSCCGGGSGGGTT-TEEEEESSCCTTTHHHH
T ss_pred HHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHH--hhcCeEEEEeeccCCccccChHHhC-cEEEecCcCCHHHHhHH
Confidence 47899999999999998763 44667777776532 2468999886 33211 11111 122111
Q ss_pred -----------c--------CCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 93 -----------Y--------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 93 -----------l--------~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
+ .+...+|+||+.+...|. ++++..|.. . ... ..+++.|+++|+-++.
T Consensus 91 ~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~-~Gn~s~g~s---~--~~~--~~~a~~A~~VI~eVn~ 157 (448)
T 3gk7_A 91 AEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDH-NGFCCVGVS---S--DYT--MQAIKSAKIVLAEVND 157 (448)
T ss_dssp HHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCT-TSEEECCSB---C--BTH--HHHHHHCSEEEEEEET
T ss_pred hCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCC-CCcEEecCC---c--ChH--HHHHHhCCeEEEEeec
Confidence 1 122379999999999998 688765421 1 122 3345789999998885
No 33
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=95.66 E-value=0.036 Score=49.89 Aligned_cols=108 Identities=10% Similarity=0.110 Sum_probs=67.8
Q ss_pred HHHHhhcCCCCCEEEECcC-HHHHHHHHHHHhHhhcCCCCCeEEEcCcHH----HHH-HHHHCCCcEEEc----------
Q 029472 30 KHTVDTYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVA----SAN-EAAVAGIPLDQY---------- 93 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsG-sT~~~la~~L~~~~~~~~~~~lTVVTnSl~----ia~-~l~~~~i~v~~l---------- 93 (193)
+++|+++|+|||+|+++.+ -+-..+.++|.++.+ .+++||+++++.. ... .+ ...++...+
T Consensus 9 aeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~~~~~~~~~lr~~i 85 (436)
T 2oas_A 9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSL-LGHLRHRCFFGGVPTRPLL 85 (436)
T ss_dssp HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGG-TTTEEEEESSCCTTTHHHH
T ss_pred HHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHh-cCcEEEeecCCCHHHHHHH
Confidence 4788899999999999866 134667788876532 1369999996421 111 11 111221110
Q ss_pred --------------------CCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 94 --------------------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 94 --------------------~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
.+...+|+||+.+...|. .+++..| . .. ... ..++++|+++|+-++.
T Consensus 86 ~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~-~Gn~s~~--~-s~--~~~--~~~a~aA~~VIveVn~ 152 (436)
T 2oas_A 86 QSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDK-HGMCSLG--I-SV--EAT--LAACQVAGKIIAHINP 152 (436)
T ss_dssp HTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCT-TCEEECT--T-BC--TTH--HHHHHHCSEEEEEECT
T ss_pred HcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCC-CceEEEe--c-Cc--CcH--HHHHHhcCeEEEEEcC
Confidence 122379999999999998 5877643 1 11 111 3335789999999886
No 34
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=95.53 E-value=0.07 Score=48.07 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=65.3
Q ss_pred HHHHhhcCCCCCEEEECcC-HHHHHHHHHHHhHhhcCCCCCeEEEcCcHH-----HHHHHHHCCCc------------EE
Q 029472 30 KHTVDTYITSGMVVGLGSG-QASAMAIEYMGRQLRAGALKDVIGIPTSVA-----SANEAAVAGIP------------LD 91 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsG-sT~~~la~~L~~~~~~~~~~~lTVVTnSl~-----ia~~l~~~~i~------------v~ 91 (193)
+++|+++|++||+|+++.+ .+-..+.+.|.++.. .++++|+++.... ....+.++ +. .+
T Consensus 18 aeEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~--~l~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~i 94 (434)
T 3eh7_A 18 AEEAVKHIKNGERVALSHAAGVPQSCVDALVQQAD--LFQNVEIYHMLCLGEGKYMAPEMAPH-FRHITNFVGGNSRKAV 94 (434)
T ss_dssp HHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTT--TC--CEEECCBCTTCC---------------------------
T ss_pred HHHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHh--hcCCeEEEEeccCCchhhcChhhhCe-EEEecCcCCHHHHHHH
Confidence 4788999999999999876 344778888876522 2468999985421 11111110 10 00
Q ss_pred --------E--c--------CCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 92 --------Q--Y--------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 92 --------~--l--------~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
. + .+...+|+||+.+...|. ++++..|. .. ... ..+++.|+++|+-++.
T Consensus 95 ~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~-~Gn~s~g~---s~--~~~--~~~~~~A~~VI~eVn~ 161 (434)
T 3eh7_A 95 EENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDE-NGYCSFGV---SC--DYS--KPAAESAHLVIGEINR 161 (434)
T ss_dssp ---CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCT-TSEEECTT---BC--TTH--HHHHHHCSEEEEEEET
T ss_pred HCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCC-CCCEEecC---cc--chH--HHHHHhCCeEEEEecC
Confidence 0 1 112379999999999998 58876432 11 122 3445789999998885
No 35
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=95.49 E-value=0.19 Score=46.05 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=65.8
Q ss_pred HHHHHhhcCCCCCEEEECc----CHHHHHHHHHHHhHhh----cCCCCCeEEEcCcH---HHHHHHHHCC-C--------
Q 029472 29 AKHTVDTYITSGMVVGLGS----GQASAMAIEYMGRQLR----AGALKDVIGIPTSV---ASANEAAVAG-I-------- 88 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~Lds----GsT~~~la~~L~~~~~----~~~~~~lTVVTnSl---~ia~~l~~~~-i-------- 88 (193)
-|++|+++|++||+|++++ | +-..+.++|.++.. .+...+++++|... .....+...+ +
T Consensus 16 SaeEAv~~IkdGd~V~~~Gf~~~G-~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~ 94 (514)
T 4eu9_A 16 PAETASELIKHGDVVGTSGFTGAG-YPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNT 94 (514)
T ss_dssp CHHHHHTTCCTTCEEEECCBTTBS-CCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCC
T ss_pred cHHHHHHhCCCCCEEEECCCCCCc-CHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCC
Confidence 3588999999999999973 3 22334444443311 13234788887542 1112233322 1
Q ss_pred -------------cEEEc-----------CCCCcccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEE
Q 029472 89 -------------PLDQY-----------RDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVF 144 (193)
Q Consensus 89 -------------~v~~l-----------~~~~~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~il 144 (193)
..+.. ..+..+|+||+.+...|. ++++..|... ... ..++++|+++|+
T Consensus 95 ~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De-~Gnis~g~sv-----~~~--~~~~~~A~~VIv 166 (514)
T 4eu9_A 95 DATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITE-DGGIVPTSSV-----GNS--QTFLNLAEKVII 166 (514)
T ss_dssp CHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECT-TCCEEECSBC-----BTH--HHHHHHCSEEEE
T ss_pred CHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCC-CceEEecCCc-----chH--HHHHHhCCeEEE
Confidence 11110 122368999999999999 6887654222 222 234588999999
Q ss_pred EEeCC
Q 029472 145 MVSEN 149 (193)
Q Consensus 145 LaD~S 149 (193)
-++..
T Consensus 167 evn~~ 171 (514)
T 4eu9_A 167 EVNEW 171 (514)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 98863
No 36
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=95.45 E-value=0.041 Score=50.56 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=66.4
Q ss_pred HHHHhhcCCCCCEEEECcCH---HHHHHHHHHHhHhh----cCCCCCeEEEcCc-HH--HHHHHHHC-CCcEEE------
Q 029472 30 KHTVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLR----AGALKDVIGIPTS-VA--SANEAAVA-GIPLDQ------ 92 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGs---T~~~la~~L~~~~~----~~~~~~lTVVTnS-l~--ia~~l~~~-~i~v~~------ 92 (193)
+++|+++|+|||+|+++..+ +-..+.++|.++.. .|...++|++++. .. ....+... .++...
T Consensus 8 aeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~~ 87 (506)
T 2nvv_A 8 AEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNK 87 (506)
T ss_dssp HHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCH
T ss_pred HHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCCH
Confidence 46788999999999998532 23345555654422 1211279999963 21 11133322 232211
Q ss_pred -------------------------cCCCC-cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEE
Q 029472 93 -------------------------YRDTS-QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146 (193)
Q Consensus 93 -------------------------l~~~~-~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLa 146 (193)
..... .+|+||+.+...|. .+++..|.. .. .. ..++++|+++|+-+
T Consensus 88 ~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe-~Gnls~~~s---~~--~~--~~~a~aA~~VIveV 159 (506)
T 2nvv_A 88 DLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTE-DGKILPTTG---VG--IL--PTICRLADRIIVEL 159 (506)
T ss_dssp HHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECT-TSEEECCSB---CB--TH--HHHHHHCSEEEEEE
T ss_pred HHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCC-CceEEEeCC---cC--cH--HHHHHhCCcEEEEE
Confidence 01224 58999999999998 688765321 11 12 33457899999999
Q ss_pred eC
Q 029472 147 SE 148 (193)
Q Consensus 147 D~ 148 (193)
+.
T Consensus 160 n~ 161 (506)
T 2nvv_A 160 ND 161 (506)
T ss_dssp ET
T ss_pred CC
Confidence 86
No 37
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.11 E-value=0.083 Score=48.74 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHhhcCCCCCEEEECc---C-HHHHHHHHHHHhHhh-cCCCCCeEEEcCcH
Q 029472 30 KHTVDTYITSGMVVGLGS---G-QASAMAIEYMGRQLR-AGALKDVIGIPTSV 77 (193)
Q Consensus 30 a~~A~~~I~dg~tI~Lds---G-sT~~~la~~L~~~~~-~~~~~~lTVVTnSl 77 (193)
++.|+++|+|||+|+++. + .+-..+.++|.++.. .+..++||+++++.
T Consensus 18 a~eAv~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~ 70 (531)
T 2ahu_A 18 AQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTG 70 (531)
T ss_dssp HHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSC
T ss_pred HHHHHhhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEecc
Confidence 478889999999999976 2 234667777776522 12356999999864
No 38
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=95.04 E-value=0.028 Score=45.40 Aligned_cols=61 Identities=15% Similarity=0.016 Sum_probs=43.4
Q ss_pred cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeCCCccCCC--CCcccEEEec
Q 029472 98 QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVL--DGSVPVLVQP 165 (193)
Q Consensus 98 ~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~SKf~~~l--~~~~pvEv~p 165 (193)
.+|++|+|||.|.. ++++..--|+ ..+- .+.-.+...+|++|..+||.... |..+|+|-.+
T Consensus 51 ~Vd~VivGAd~v~~-nG~v~nkiGT-----~~~A-l~Ak~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~ 113 (191)
T 1w2w_B 51 PIKAAFVGADRIVR-NGDTANKIGT-----LQLA-VICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERN 113 (191)
T ss_dssp CEEEEEECCSEECT-TSCEEEETTH-----HHHH-HHHHHHTCEEEEECCGGGBCSSCCSGGGCCCCBCC
T ss_pred CCCEEEECccEEec-CCCEEecccH-----HHHH-HHHHHcCCCEEEecccceeeeccCCcceeecccCC
Confidence 38999999999998 6776554444 3332 22234567899999999999754 5678887654
No 39
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=94.64 E-value=0.21 Score=46.04 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=67.6
Q ss_pred HHHHhhc--CCCCCEEEECcCH-HHH----HHHHHHHhHhhcCCCCCeEEEcCcHHHH--H--HHHHCCC--cEEE----
Q 029472 30 KHTVDTY--ITSGMVVGLGSGQ-ASA----MAIEYMGRQLRAGALKDVIGIPTSVASA--N--EAAVAGI--PLDQ---- 92 (193)
Q Consensus 30 a~~A~~~--I~dg~tI~LdsGs-T~~----~la~~L~~~~~~~~~~~lTVVTnSl~ia--~--~l~~~~i--~v~~---- 92 (193)
+++|+++ |+|||+|+++..+ +-. .+.++|.++ .+++||+++++.-.. . .+...+. +++.
T Consensus 52 aeEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g 127 (519)
T 2hj0_A 52 IHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLR 127 (519)
T ss_dssp HHHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCH
T ss_pred HHHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCC
Confidence 4788888 9999999998662 122 556667653 235999999865322 1 1122221 1211
Q ss_pred -----------------cC-----------CCCcccEEEeccccccCCCccee--cCCCCCCcchhHHHHHHHHHhcCeE
Q 029472 93 -----------------YR-----------DTSQIDFAFDDADIIEEGTLVAV--IGRQQPKGDESIIQEKSVLNAADKL 142 (193)
Q Consensus 93 -----------------l~-----------~~~~~D~af~gadgvd~~~~~~i--~g~g~~~~~ea~~k~k~i~~~S~~~ 142 (193)
+. +...+|+||+.+...|. .+++. .|.. ....-..- ..++++|+++
T Consensus 128 ~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~-~Gnls~~~g~s--~~~s~~~~-~~~a~~A~~V 203 (519)
T 2hj0_A 128 DKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDA-YGNANGTRGKT--TCGSLGYA-MIDAKYADQV 203 (519)
T ss_dssp HHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECT-TSCEESSSSSS--CCSCCHHH-HHHHHHCSEE
T ss_pred cHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCC-CCcEEEecCcc--ccccchhh-HHHHhhCCEE
Confidence 11 12369999999999998 58775 2311 10001222 4456899999
Q ss_pred EEEEeC
Q 029472 143 VFMVSE 148 (193)
Q Consensus 143 ilLaD~ 148 (193)
|+-++.
T Consensus 204 IaEVn~ 209 (519)
T 2hj0_A 204 VIVTDT 209 (519)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 999885
No 40
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=94.26 E-value=0.037 Score=46.48 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=31.0
Q ss_pred HHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 31 HTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 31 ~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
..-.+++++|++|+++.|+|...++++|... ..+++++|+
T Consensus 48 ~~L~~~l~~~~viGv~wG~T~~~v~~~l~~~----~~~~~~vV~ 87 (267)
T 3nze_A 48 RTIGPLVDSNAIIGVAWGATLSAVSRHLTRK----MTHDSIVVQ 87 (267)
T ss_dssp HHHGGGCCSSCEEEECCSHHHHHHHHTCCCC----CCSSCEEEE
T ss_pred HHHHHhCCCCCEEEECCCHHHHHHHHhcCcc----CCCCCEEEE
Confidence 4444567899999999999999999999742 124778774
No 41
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=94.13 E-value=0.026 Score=47.38 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=51.0
Q ss_pred HHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc------------CcHHHHHHHH-HCCCcEEEc--
Q 029472 29 AKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP------------TSVASANEAA-VAGIPLDQY-- 93 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT------------nSl~ia~~l~-~~~i~v~~l-- 93 (193)
+|..-.+++++|++|+++.|+|...++++|.... .+++++|+ ++-.++..++ ..+.+...+
T Consensus 45 aA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~~----~~~~~~V~l~GG~~~~~~~~~~~~i~~~lA~~~~~~~~~l~~ 120 (267)
T 3kv1_A 45 VSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIVT----QRNARFVSAIGGTHRSGDIINADHICRRLAKKYGGSSETLYA 120 (267)
T ss_dssp HHHHHHHHCCTTCEEEECCSHHHHHHHHCCCCCC----CCCCEEEESBCBCC----CCCHHHHHHHHHHHHTCEEECCCS
T ss_pred HHHHHHHhCCCCCEEEECchHHHHHHHHhccccC----CCCCEEEeCCCCCCCCccccCHHHHHHHHHHHhCCeEEEEec
Confidence 3344456678999999999999999999996431 13566553 4445555554 334443321
Q ss_pred --------------C---------CCCcccEEEeccccccC
Q 029472 94 --------------R---------DTSQIDFAFDDADIIEE 111 (193)
Q Consensus 94 --------------~---------~~~~~D~af~gadgvd~ 111 (193)
. ...++|++|.|.-...+
T Consensus 121 P~~~~~~~~~~~l~~~~~i~~vl~~~~~aDiai~GIG~~~~ 161 (267)
T 3kv1_A 121 PAYVNDPSLRSAFMEHATIKETLSQARKAEFALVGIGDMDE 161 (267)
T ss_dssp BSBCSSHHHHHHHHTSHHHHHHHHHHHTCSEEEEEEEEHHH
T ss_pred CcccCCHHHHHHHHhChHHHHHHHHHHhCCEEEEeCCCCCC
Confidence 0 01269999999877664
No 42
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=93.24 E-value=0.19 Score=46.30 Aligned_cols=108 Identities=12% Similarity=0.109 Sum_probs=64.1
Q ss_pred HHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH-HHH--HCCCcE---EEc------
Q 029472 26 FRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-EAA--VAGIPL---DQY------ 93 (193)
Q Consensus 26 k~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~-~l~--~~~i~v---~~l------ 93 (193)
++.||+.++++|+||+++.+|.| .-..++.+|.+. +..+++++.|=+--+.. -+. ..++.+ ..+
T Consensus 288 ~~~Ia~~~A~~i~dG~~v~lGiG-iP~av~~~l~~~---~~~~~l~~~~E~G~~g~~~~~g~~~g~~~~~~~~~~~~~~f 363 (531)
T 2ahu_A 288 RKLVARRALFEMRKGAVGNVGVG-IADGIGLVAREE---GCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQF 363 (531)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSS-TTTTHHHHHHHH---TCGGGSEEBCTTSEESCBCC-----CCCBSCSEECCHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEecCc-HHHHHHHHHHhc---CCCCCeEEEEccceecCccCCCccceeEECHHHhcchhhhh
Confidence 44555899999999999999999 556778888762 00125665552100000 000 001100 001
Q ss_pred ---CCCCcccEEEeccccccCCCcce--------ecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 94 ---RDTSQIDFAFDDADIIEEGTLVA--------VIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 94 ---~~~~~~D~af~gadgvd~~~~~~--------i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
.. .++|++|+|+-.||. .+++ +.|.|| +. -+ .+.|+++|+...|
T Consensus 364 ~~~~~-g~vdvailga~eVD~-~Gnvn~~~~G~~~~G~GG-----~~---D~-~~gA~~~i~~~~~ 418 (531)
T 2ahu_A 364 DFYHG-GGLDVCYLSFAEVDQ-HGNVGVHKFNGKIMGTGG-----FI---DI-SATSKKIIFCGTL 418 (531)
T ss_dssp HHHHT-TCCSEEEEECSEEET-TSCEECSEETTEECBCTT-----HH---HH-HTTCSEEEEECCS
T ss_pred heecC-CCeEEEEeChHHhCC-CCcchhhccCCceecCCc-----ch---hh-hcCCCeEEEEecc
Confidence 11 268999999999998 5643 556566 22 22 4778899988764
No 43
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=92.76 E-value=0.075 Score=44.43 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.0
Q ss_pred HHHHhhcCCCCCEEEECcCHHHHHHHHHHHh
Q 029472 30 KHTVDTYITSGMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGsT~~~la~~L~~ 60 (193)
|..-.+++++|++|+++.|+|...++++|+.
T Consensus 51 A~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~ 81 (266)
T 3efb_A 51 AQLLDRLLEPGDIVGFSWGRAVSALVENLPQ 81 (266)
T ss_dssp HHHHHHHCCTTCEEEECCSHHHHHHHHTCCC
T ss_pred HHHHHHhCCCCCEEEEcccHHHHHHHHhcCc
Confidence 3444456789999999999999999999975
No 44
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=92.29 E-value=0.13 Score=42.98 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=31.7
Q ss_pred HHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 29 AKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
+|+.-.++|+++++|+|..|+|...++++|... ..+++++|.
T Consensus 47 aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~----~~~~v~~v~ 88 (266)
T 2gnp_A 47 AAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK----SVRNVHFYP 88 (266)
T ss_dssp HHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC----CCSSCEEEE
T ss_pred HHHHHHHhCCCCCEEEECChHHHHHHHHhcccc----CCCCCEEEE
Confidence 334555677899999999999999999999742 124677763
No 45
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=92.16 E-value=2.8 Score=38.36 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcC------CCCCEEEECcCHHHHHHHHHHHhH
Q 029472 24 VLFRAAKHTVDTYI------TSGMVVGLGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 24 ekk~iaa~~A~~~I------~dg~tI~LdsGsT~~~la~~L~~~ 61 (193)
+.++.||+.|+++| +||+++=+|.|.....++.+|++.
T Consensus 248 ~~~~~IA~~~a~~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~ 291 (509)
T 1xr4_A 248 PRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDK 291 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCCEEEeccChHHHHHHHHhhhh
Confidence 44555669999999 999999999998888888888864
No 46
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=91.84 E-value=0.023 Score=49.53 Aligned_cols=51 Identities=6% Similarity=-0.086 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHH-HHHHH
Q 029472 20 NGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVAS-ANEAA 84 (193)
Q Consensus 20 ~~~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~i-a~~l~ 84 (193)
.+.++|++++ +.|++ +++ |.|+|+.++|++|.+. .++|+|||+... +..|.
T Consensus 97 ~~~~eK~~Ia-~~aa~---~~~----d~gtt~~~~a~~Ls~~------~~~tvv~~~~~~~~~~L~ 148 (338)
T 1stz_A 97 ETSEADLAVE-TFKSM---PLA----DPEKVLFLAGNLLARL------TEGYVLIERPNTRDLKIL 148 (338)
T ss_dssp TSCCCCHHHH-TCCCT---TBC----CHHHHHHHHHHHHHHH------HTCEEEEECCCGGGCBCC
T ss_pred CCHHHHHHHH-HHHhh---cCC----CHHHHHHHHHHHHhcc------CCeEEEEeCCHHHHHHhh
Confidence 4455666655 65544 677 9999999999999864 279988888764 55554
No 47
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=91.33 E-value=0.17 Score=43.65 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHh-hcCCCCCEEEECcC---HHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 31 HTVD-TYITSGMVVGLGSG---QASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 31 ~~A~-~~I~dg~tI~LdsG---sT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+.|+ ++|+|||+|++++- .+-..+.+.|.++ + .++||+++|+
T Consensus 7 ~eAv~~~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~-~~dLtlv~~~ 52 (317)
T 1poi_A 7 KDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ---G-ITDLTGLGGA 52 (317)
T ss_dssp HHHHHHHCCTTCEEEECSBTTBSCCHHHHHHHHHT---T-CCCEEEECSE
T ss_pred HHHHHhhCCCCCEEEECCccccCcHHHHHHHHHhC---C-CCCEEEEEEC
Confidence 5667 88999999999863 2456777888764 2 4699999654
No 48
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=90.79 E-value=0.13 Score=42.73 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 29 AKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
+|+.-.++|+++++|+|..|+|...++++|.... ..+++++|.
T Consensus 46 aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~~---~~~~v~~v~ 88 (255)
T 2okg_A 46 AVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS---KNRELLFVP 88 (255)
T ss_dssp HHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT---TCCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEECCcHHHHHHHHhhcccc---CCCCCEEEE
Confidence 3455556788999999999999999999997420 124677653
No 49
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=89.71 E-value=0.28 Score=44.96 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=68.6
Q ss_pred HHHHhhc--CCCCCEEEECcCH-HHHHHHHHHHhHhhcCCCCCeEEEcCcHHH-----HHHHHHCCC--cEEE-------
Q 029472 30 KHTVDTY--ITSGMVVGLGSGQ-ASAMAIEYMGRQLRAGALKDVIGIPTSVAS-----ANEAAVAGI--PLDQ------- 92 (193)
Q Consensus 30 a~~A~~~--I~dg~tI~LdsGs-T~~~la~~L~~~~~~~~~~~lTVVTnSl~i-----a~~l~~~~i--~v~~------- 92 (193)
+++|+++ |+|||+|+++.+. +-..+.+.|.++.....+++||++++|... +..+ ..|. +++.
T Consensus 49 aeEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i-~~g~v~r~~~~~~g~~~ 127 (509)
T 1xr4_A 49 LEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHI-KNGVVRQIYTSGLRGKL 127 (509)
T ss_dssp HHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHH-HTTSEEEEEESBCCHHH
T ss_pred HHHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHh-hcCceEEEEEccCCHHH
Confidence 4788888 9999999998663 344566666554332124699999986532 2222 2221 1111
Q ss_pred ---------------cC----------CCCcccEEEeccccccCCCcceec--CCCCCCcchhHHHHHHHHHhcCeEEEE
Q 029472 93 ---------------YR----------DTSQIDFAFDDADIIEEGTLVAVI--GRQQPKGDESIIQEKSVLNAADKLVFM 145 (193)
Q Consensus 93 ---------------l~----------~~~~~D~af~gadgvd~~~~~~i~--g~g~~~~~ea~~k~k~i~~~S~~~ilL 145 (193)
.. ....+|+||+.+...|. .+++.. |... ...-... ..++.+|+++|+-
T Consensus 128 r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~-~Gnls~~~g~~~-~~s~~~~--~a~a~~A~~VIaE 203 (509)
T 1xr4_A 128 GEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDE-FGNANGFSGKSR-CGSLGYA--QVDAQYAKCVVLL 203 (509)
T ss_dssp HHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEET-TCCEESSSSSSC-CCCCTTH--HHHHHHCSEEEEE
T ss_pred HHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCC-CceEEEeCCCCc-ccchHHH--HHHHhhCCEEEEE
Confidence 11 22379999999999998 577753 2100 0010111 3445889999998
Q ss_pred EeC
Q 029472 146 VSE 148 (193)
Q Consensus 146 aD~ 148 (193)
++.
T Consensus 204 Vn~ 206 (509)
T 1xr4_A 204 TEE 206 (509)
T ss_dssp ESC
T ss_pred eCC
Confidence 875
No 50
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=89.54 E-value=0.28 Score=40.87 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=30.8
Q ss_pred HHHHHhhcCCCCCEEEEC-cCHHHHHHHHHHHhHhhcCCCC-CeEEEc
Q 029472 29 AKHTVDTYITSGMVVGLG-SGQASAMAIEYMGRQLRAGALK-DVIGIP 74 (193)
Q Consensus 29 aa~~A~~~I~dg~tI~Ld-sGsT~~~la~~L~~~~~~~~~~-~lTVVT 74 (193)
+|+.-.++|+++++|+|. .|+|...++++|..... .+ ++++|.
T Consensus 47 aA~~l~~~l~~~~viGla~~G~T~~~~~~~l~~~~~---~~~~v~~v~ 91 (264)
T 2r5f_A 47 AAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPG---KQSAQEVVQ 91 (264)
T ss_dssp HHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--C---CCCCSEEEE
T ss_pred HHHHHHHhCCCCCEEEECcchHHHHHHHHhhccccC---CCCCcEEEE
Confidence 334555667899999999 99999999999975310 13 577653
No 51
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=89.51 E-value=0.34 Score=44.18 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHhhcCCCCCEEEECcCH---HHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 30 KHTVDTYITSGMVVGLGSGQ---ASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 30 a~~A~~~I~dg~tI~LdsGs---T~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
++.|+.+|+|||+|.+++-. +-..++++|.++ + .++||+|.|+
T Consensus 7 ~~eAv~~I~DG~ti~~gGf~~~g~P~~li~al~~~---~-~kdLt~v~~~ 52 (481)
T 3k6m_A 7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKT---G-VKELTAVSNN 52 (481)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---C-CCSEEEECSC
T ss_pred HHHHHhhCCCCCEEEECCccccCcHHHHHHHHHHc---C-CCceEEEEeC
Confidence 36788889999999998622 347788888764 2 3699999885
No 52
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=85.13 E-value=1.1 Score=40.64 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
+..+.||+.++++|+||.++=+|.|.....++.+|.++ ++|.+-|-
T Consensus 219 ~~~~~Ia~~va~~i~dG~~lQ~GiG~ip~Av~~~L~~~------~~lgi~tE 264 (455)
T 3qli_A 219 PEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDR------NDLGIHTE 264 (455)
T ss_dssp THHHHHHHHHHHTCCTTCEEEECSSHHHHHHHHHGGGC------CSBEEBCS
T ss_pred hHHHHHHHHHHHHhcCCCeEEeccchHHHHHHHhcCcC------CCeEEEcC
Confidence 44445569999999999999999999999999999874 47887663
No 53
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=81.49 E-value=1.2 Score=39.89 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
+.++.||+.|+++|+||+++=+|.|.....++.+|++. +++.+-|
T Consensus 188 ~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~t 232 (436)
T 2oas_A 188 AVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGH------KDLGVHT 232 (436)
T ss_dssp HHHHHHHHHHHHHCCTTCEEECCSSHHHHHHHHTCTTC------CSBEEBC
T ss_pred hHHHHHHHHHHHhcCCCCEEeecCcHHHHHHHHHHhhc------CceeEEe
Confidence 44555669999999999999999999999999999864 3677744
No 54
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=80.76 E-value=1.7 Score=38.93 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
+..++||+.|+++|+||.++=+|.|.....++..|.+. +++.+-|--
T Consensus 197 ~~~~~Ia~~~a~~i~dG~~lq~GiG~ip~AV~~~L~~~------~~lgi~tE~ 243 (434)
T 3eh7_A 197 EVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDK------KDLGIHTEM 243 (434)
T ss_dssp HHHHHHHHHHHHTCCTTCEEECCSSHHHHHHHHTTTTC------CSBEEECSE
T ss_pred hHHHHHHHHHHHhccCCCEEEeccchHHHHHHHHhhhc------CCceEEccC
Confidence 45555669999999999999999999999999998753 366666554
No 55
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=80.75 E-value=0.99 Score=41.13 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHH-----------HHHHCC---Cc
Q 029472 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASAN-----------EAAVAG---IP 89 (193)
Q Consensus 24 ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~-----------~l~~~~---i~ 89 (193)
+.++++|+.|+..|+||++|.||.| .-...+.++++. +++++.|=+-.+-. .+.+.| +.
T Consensus 261 ~~~~~Ia~raA~el~dG~~vnlGIG-iP~~v~~~~~~~------~~l~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~t 333 (481)
T 3k6m_A 261 NVRERIIKRAALEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLINAGKETVT 333 (481)
T ss_dssp -CHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGCCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSBBCC
T ss_pred CHHHHHHHHHHHhcCCCCEEEEccC-HHHHHHhhhccC------CcEEEEECCcEeCCccCCCCCccCcccccCCCceEe
Confidence 4455666999999999999999999 445566666542 36766654211100 000011 11
Q ss_pred EEE-------------cCCCCcccEEEeccccccCCCcce---------ecCCCCCCcchhHHHHHHHHHhc-CeEEEEE
Q 029472 90 LDQ-------------YRDTSQIDFAFDDADIIEEGTLVA---------VIGRQQPKGDESIIQEKSVLNAA-DKLVFMV 146 (193)
Q Consensus 90 v~~-------------l~~~~~~D~af~gadgvd~~~~~~---------i~g~g~~~~~ea~~k~k~i~~~S-~~~ilLa 146 (193)
+.. +++ .++|++|+|+-.||. .+++ +.|.|| +. -. .+.| +++|+..
T Consensus 334 ~~~g~~~~~~~~~F~~~~g-G~~Dv~ilga~qVD~-~Gnvn~~~~pg~~~~G~GG-----~~---D~-~~ga~~k~ii~~ 402 (481)
T 3k6m_A 334 VLPGASYFSSDESFAMIRG-GHVNLTMLGAMQVSK-YGDLANWMIPGKLVKGMGG-----AM---DL-VSSAKTKVVVTM 402 (481)
T ss_dssp EEEEEEECCHHHHHHHHHT-TCCSEEEECCSEEET-TCCEECSCBTTTBCSCCTT-----HH---HH-TCCTTSEEEEEC
T ss_pred ccccceecCCHHHeeeecC-CCeEEEEechHhccC-CCCccccccCCceeecCCc-----ch---hh-hccCCceEEEEE
Confidence 111 112 278999999999997 4543 445555 22 12 3567 6999998
Q ss_pred eCCC
Q 029472 147 SENQ 150 (193)
Q Consensus 147 D~SK 150 (193)
.|+.
T Consensus 403 ~~t~ 406 (481)
T 3k6m_A 403 EHSA 406 (481)
T ss_dssp CSBC
T ss_pred eeEc
Confidence 8863
No 56
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=80.21 E-value=1.6 Score=39.32 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
.+.++.||+.|+++|+||+++=+|.|..-..++.+|.+. +++.+-|--
T Consensus 192 ~~~~~~IA~~~a~~i~dG~~lqlGIG~ip~aV~~~L~~~------~~l~~~tE~ 239 (448)
T 3gk7_A 192 GEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDK------KHLGIHSEM 239 (448)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEBCSSHHHHHHHHTCTTC------CSBEEEEEE
T ss_pred CcHHHHHHHHHHHHccCCCEEEeccCcHHHHHHHHhhhc------CCeeEEcCC
Confidence 355555669999999999999999999888999999763 366665543
No 57
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=75.69 E-value=12 Score=27.08 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=40.8
Q ss_pred CCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEc
Q 029472 40 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQY 93 (193)
Q Consensus 40 g~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l 93 (193)
+.++.+|.|..-..+++.|.+. | .++++|..+-.....+...++.++.-
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~---g--~~v~vid~~~~~~~~~~~~g~~~i~g 56 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS---D--IPLVVIETSRTRVDELRERGVRAVLG 56 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHcCCCEEEC
Confidence 5689999999999999999864 2 37999999998888888788877653
No 58
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=64.10 E-value=7 Score=35.78 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcC------CCCCEEEECcCHHHHHHHHHHHhH
Q 029472 24 VLFRAAKHTVDTYI------TSGMVVGLGSGQASAMAIEYMGRQ 61 (193)
Q Consensus 24 ekk~iaa~~A~~~I------~dg~tI~LdsGsT~~~la~~L~~~ 61 (193)
+.++.||+.|+++| +||+++-+|.|.....++.+|+++
T Consensus 251 ~~~~~IA~~~a~~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~ 294 (519)
T 2hj0_A 251 PKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQ 294 (519)
T ss_dssp HHHHHHHHHHHHHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCCCCCEEEeccChHHHHHHHHHhhh
Confidence 34454558888885 999999999998888888888764
No 59
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.46 E-value=29 Score=25.88 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
...++.+|.|..-..+++.|.+.. | .+++++..+-.-...+...|..++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~--g--~~V~vid~~~~~~~~~~~~g~~~~~ 88 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARY--G--KISLGIEIREEAAQQHRSEGRNVIS 88 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHH--C--SCEEEEESCHHHHHHHHHTTCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcc--C--CeEEEEECCHHHHHHHHHCCCCEEE
Confidence 456889999999999999997530 2 3799999988877777777877654
No 60
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=58.02 E-value=43 Score=29.29 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=40.8
Q ss_pred CCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 40 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 40 g~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
+.+|.+|.|..-..+++.|... | .+++||..+-.....+...|++++.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~---g--~~vvvId~d~~~v~~~~~~g~~vi~ 52 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS---G--VKMVVLDHDPDHIETLRKFGMKVFY 52 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEECCHHHHHHHHHTTCCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHhCCCeEEE
Confidence 4589999999999999999864 2 3799999999988888888888775
No 61
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=56.62 E-value=12 Score=30.52 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCEEEECcCHHHHHHHHHHHhHhhcCC--CCCeEEE
Q 029472 40 GMVVGLGSGQASAMAIEYMGRQLRAGA--LKDVIGI 73 (193)
Q Consensus 40 g~tI~LdsGsT~~~la~~L~~~~~~~~--~~~lTVV 73 (193)
+.+|+|.+|+|...+.++|....+.+. .++++++
T Consensus 34 ~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~ 69 (266)
T 1fs5_A 34 PFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTF 69 (266)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEE
T ss_pred ceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEE
Confidence 779999999999999999975311111 2367776
No 62
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=55.53 E-value=8.2 Score=30.86 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHhhcCC--CCCEEEECcCHHHHHHHHHHHh
Q 029472 31 HTVDTYIT--SGMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 31 ~~A~~~I~--dg~tI~LdsGsT~~~la~~L~~ 60 (193)
+...+.++ ++.+|+|.+|+|...+.++|.+
T Consensus 18 ~~l~~~i~~~~~~~i~lsgG~T~~~~~~~L~~ 49 (242)
T 2bkx_A 18 RITADTIKEKPDAVLGLATGGTPEGTYRQLIR 49 (242)
T ss_dssp HHHHHHHHHCTTCEEEECCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHHH
Confidence 34444444 4789999999999999999974
No 63
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=53.60 E-value=1.6 Score=30.27 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEECcCHHHHH
Q 029472 22 SSVLFRAAKHTVDTYITSGMVVGLGSGQASAM 53 (193)
Q Consensus 22 ~~ekk~iaa~~A~~~I~dg~tI~LdsGsT~~~ 53 (193)
+..|++.+-+.+.+||.+|-..|.-+|||+.+
T Consensus 32 P~~k~r~vKK~~~~LV~Eg~leywSSGSTTmy 63 (78)
T 1ucr_A 32 PDMKQREVKKILTALVNDEVLEYWSSGSTTMY 63 (78)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cccCHHHHHHHHHHHHhcCceEEEecCCeEEE
Confidence 45667777677779999999999999988765
No 64
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=50.50 E-value=12 Score=29.66 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=28.0
Q ss_pred HHHhhcCC-CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 31 HTVDTYIT-SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 31 ~~A~~~I~-dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
+.-.+.++ .+++|+|.+|+|...+.++|..... ..++++++.
T Consensus 19 ~~l~~~i~~~~~~i~ls~G~T~~~~~~~L~~~~~--~~~~v~v~~ 61 (234)
T 2ri0_A 19 RMLEEEITFGAKTLGLATGSTPLELYKEIRESHL--DFSDMVSIN 61 (234)
T ss_dssp HHHHHHHHTTCCEEEECCSSTTHHHHHHHHTSCC--CCTTCEEEE
T ss_pred HHHHHHHHhCCCEEEEcCCCCHHHHHHHHHhcCC--ChhheEEEe
Confidence 34444455 4579999999999999999974100 113666664
No 65
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=49.90 E-value=64 Score=22.67 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 40 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 40 g~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
..++.+|.|..-..+++.|.+. | .+++++..+-.....+...+..++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~---g--~~V~~id~~~~~~~~~~~~~~~~~~ 54 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA---G--KKVLAVDKSKEKIELLEDEGFDAVI 54 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C--CeEEEEECCHHHHHHHHHCCCcEEE
Confidence 4588899999999999999864 3 3799999998887777777776654
No 66
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=48.50 E-value=25 Score=29.10 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=18.5
Q ss_pred CEEEECcCHHHHHHHHHHHh
Q 029472 41 MVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 41 ~tI~LdsGsT~~~la~~L~~ 60 (193)
.+|+|.+|+|...+.++|.+
T Consensus 35 ~~lglsgGsTp~~~~~~L~~ 54 (289)
T 1ne7_A 35 FTLGLPTGSTPLGCYKKLIE 54 (289)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred EEEEEcCCccHHHHHHHHHh
Confidence 68999999999999999975
No 67
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=47.22 E-value=75 Score=25.50 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHH-HHHHHH-CCCcEE
Q 029472 37 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVAS-ANEAAV-AGIPLD 91 (193)
Q Consensus 37 I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~i-a~~l~~-~~i~v~ 91 (193)
++..-++.+|+|.....-++.|.+. | .++|||.....- ...+.. .+++++
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~---G--A~VtVvap~~~~~l~~l~~~~~i~~i 80 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQE---G--AAITVVAPTVSAEINEWEAKGQLRVK 80 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGG---C--CCEEEECSSCCHHHHHHHHTTSCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---C--CEEEEECCCCCHHHHHHHHcCCcEEE
Confidence 4567799999999999999999764 3 379999876532 223433 346544
No 68
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=40.78 E-value=17 Score=27.32 Aligned_cols=36 Identities=3% Similarity=-0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEE-CcCHHHHHHHHHHHh
Q 029472 23 SVLFRAAKHTVDTYITSGMVVGL-GSGQASAMAIEYMGR 60 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~tI~L-dsGsT~~~la~~L~~ 60 (193)
++.++++ +.+.++.++||+|.+ |+|. ...+++.|.+
T Consensus 123 ~d~~eai-~~~~~~~~~gDvVLv~Gsg~-~~~~~~~l~~ 159 (163)
T 3mvn_A 123 DDVDELV-MRIVQQAKPNDHILIMSNGA-FGGIHQKLLT 159 (163)
T ss_dssp SSHHHHH-HHHHHHCCTTCEEEEECSSC-GGGHHHHHHH
T ss_pred CCHHHHH-HHHHHhCCCCCEEEEECCCC-HHHHHHHHHH
Confidence 3455555 788899999997766 7776 4555565544
No 69
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=39.15 E-value=53 Score=29.68 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=28.9
Q ss_pred hcCCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEc
Q 029472 35 TYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIP 74 (193)
Q Consensus 35 ~~I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVT 74 (193)
.+++||.+|=+|.|.....++..|.++ ..+++.+-|
T Consensus 258 ~l~~dG~~lQ~GiG~ip~AV~~~L~~~----~~~~l~~~t 293 (514)
T 4eu9_A 258 RLPPSLLPLQSGVGNVANAVLEGLKEG----PFENLVGYS 293 (514)
T ss_dssp SSCTTCCCEECCCSHHHHHHHHHHHHS----SCCSEEEES
T ss_pred cccCCCceeccCCCchHHHHHHHHhhc----CCcCceEee
Confidence 388999999999999999999999863 124676655
No 70
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=37.83 E-value=39 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHhhcCCC--CCEEEECcCHHHHHHHHHHHh
Q 029472 29 AKHTVDTYITS--GMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 29 aa~~A~~~I~d--g~tI~LdsGsT~~~la~~L~~ 60 (193)
+|+...+.+++ ..+|+|.+|+|...+.+.|.+
T Consensus 17 aA~~i~~~i~~~~~~~l~lsgGstp~~~~~~L~~ 50 (238)
T 1y89_A 17 LADDMLAYSQQGQPVHISLSGGSTPKMLFKLLAS 50 (238)
T ss_dssp HHHHHHHHHTTSSCEEEEECCSHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHh
Confidence 33444455555 679999999999999999964
No 71
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=35.24 E-value=31 Score=31.31 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhc----CCCC------CEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 24 VLFRAAKHTVDTY----ITSG------MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 24 ekk~iaa~~A~~~----I~dg------~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
+.+++||+.|+++ |++| .++=+|.|.....++.+|++.. .++++.+-|-
T Consensus 226 ~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~~---~~~~l~i~te 284 (506)
T 2nvv_A 226 PVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNP---DIPAFNMYTE 284 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHCT---TSCCEEEECS
T ss_pred hHHHHHHHHHHHHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhcC---CcccceEEec
Confidence 4444555888874 3445 9999999999999999998741 0136666554
No 72
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=34.33 E-value=55 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=22.3
Q ss_pred CEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEE
Q 029472 41 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGI 73 (193)
Q Consensus 41 ~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVV 73 (193)
|++.+|+|-+=+.+|.+|.+. | -+++|+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~---G--~~V~v~ 31 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA---G--HQVHLF 31 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT---T--CCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHC---C--CCEEEE
Confidence 689999999999999999764 2 256666
No 73
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=33.62 E-value=1.3e+02 Score=21.46 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=34.4
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc-HHHHHHHH---HCCCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS-VASANEAA---VAGIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS-l~ia~~l~---~~~i~v~~ 92 (193)
.+.++.+|.|.....+++.|.+. | .++++|..+ -..+..+. ..++.++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~---g--~~V~vid~~~~~~~~~~~~~~~~~~~~i~ 55 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQR---G--QNVTVISNLPEDDIKQLEQRLGDNADVIP 55 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT---T--CCEEEEECCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC---C--CCEEEEECCChHHHHHHHHhhcCCCeEEE
Confidence 45688999999999999999763 2 379999886 44333332 33566654
No 74
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=33.33 E-value=36 Score=30.83 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhc----CCCC------CEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 24 VLFRAAKHTVDTY----ITSG------MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 24 ekk~iaa~~A~~~----I~dg------~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
+.+++||+.|+++ |++| .++=+|.|.....++.+|.+. ..+++.+-|-
T Consensus 231 ~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~----~~~~l~~~se 288 (497)
T 2g39_A 231 GETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES----PFENLTMYSE 288 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS----SCCSEEEECS
T ss_pred hHHHHHHHHHHHHHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhc----ccccceEEee
Confidence 4444455788874 4566 999999999999999999863 1236666555
No 75
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=32.86 E-value=1.1e+02 Score=22.70 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCC
Q 029472 48 GQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD 95 (193)
Q Consensus 48 GsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~ 95 (193)
+..+-.....+... .+.++|||.......+...|++++.+.+
T Consensus 83 ~~~vD~~ll~lA~~------~~~~lvTnD~~L~kvA~~~GI~Vl~l~~ 124 (134)
T 3ix7_A 83 GESVDEKLLFLARD------LEAALVTNDHALLQMARIYGVKALSIQA 124 (134)
T ss_dssp CSSHHHHHHHHHHH------TTCEEEESCHHHHHHHHHTTCCEEEHHH
T ss_pred cccHHHHHHHHHHH------hCCEEEeCCHHHHHHHHHCCCeEEehHH
Confidence 34454444455543 2689999999999999999999987644
No 76
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=32.46 E-value=1.1e+02 Score=20.83 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=33.5
Q ss_pred EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHH-CCCcEE
Q 029472 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAV-AGIPLD 91 (193)
Q Consensus 42 tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~-~~i~v~ 91 (193)
++.+|.|..-..+++.|.+. | .+++++..+-..+..+.. .++.++
T Consensus 7 i~IiG~G~iG~~~a~~L~~~---g--~~v~~~d~~~~~~~~~~~~~~~~~~ 52 (140)
T 1lss_A 7 IIIAGIGRVGYTLAKSLSEK---G--HDIVLIDIDKDICKKASAEIDALVI 52 (140)
T ss_dssp EEEECCSHHHHHHHHHHHHT---T--CEEEEEESCHHHHHHHHHHCSSEEE
T ss_pred EEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHHhcCcEEE
Confidence 56779999999999999763 2 379999888776666653 466554
No 77
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=31.06 E-value=92 Score=23.78 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=36.4
Q ss_pred EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHH-HCCCcEEE
Q 029472 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLDQ 92 (193)
Q Consensus 42 tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~-~~~i~v~~ 92 (193)
++.+|.|..-..+++.|.+. | .++++|..+-..+..+. ..+..++.
T Consensus 3 iiIiG~G~~G~~la~~L~~~---g--~~v~vid~~~~~~~~l~~~~~~~~i~ 49 (218)
T 3l4b_C 3 VIIIGGETTAYYLARSMLSR---K--YGVVIINKDRELCEEFAKKLKATIIH 49 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHHHcCCeEEE
Confidence 68889999999999999764 2 38999999988877764 45776654
No 78
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=30.65 E-value=62 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=33.3
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHH-HCCCcEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAA-VAGIPLD 91 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~-~~~i~v~ 91 (193)
...++.+|+|..-..+++.|... | .+++++..+-..+..+. ..+..++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~---g--~~V~vid~~~~~~~~~~~~~g~~~~ 67 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSS---G--HSVVVVDKNEYAFHRLNSEFSGFTV 67 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT---T--CEEEEEESCGGGGGGSCTTCCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHhcCCCcEE
Confidence 34477889999999999999763 2 26888887755544444 4455544
No 79
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=29.14 E-value=57 Score=27.59 Aligned_cols=43 Identities=19% Similarity=0.020 Sum_probs=30.7
Q ss_pred cccEEEeccccccCCCcceecCCCCCCcchhHHHHHHHHHhcCeEEEEEeC
Q 029472 98 QIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSE 148 (193)
Q Consensus 98 ~~D~af~gadgvd~~~~~~i~g~g~~~~~ea~~k~k~i~~~S~~~ilLaD~ 148 (193)
.+|+||+-+...|. .+++..++ + . ... ..++++|+++|+-++.
T Consensus 171 ~~DVAlI~a~~aD~-~GN~~~~~--~-~--~~~--~~~a~aAk~VIveVe~ 213 (317)
T 1poi_A 171 QVDVAIIHAQQASP-DGTVRIWG--G-K--FQD--VDIAEAAKYTIVTCEE 213 (317)
T ss_dssp CCSEEEEEEEEECT-TCCEECCS--C-C--TTH--HHHHHHSSEEEEEEEE
T ss_pred CCcEEEEEeccCCC-CceEEEec--C-C--Cch--HHHHhhCCEEEEEEcC
Confidence 79999999999998 68876432 1 1 111 3345789999988875
No 80
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=28.83 E-value=33 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.0
Q ss_pred cCCCCCEEEECcCHHHHHHHHHHHh
Q 029472 36 YITSGMVVGLGSGQASAMAIEYMGR 60 (193)
Q Consensus 36 ~I~dg~tI~LdsGsT~~~la~~L~~ 60 (193)
+.++|+.+-+-.|+|+..+|+.+..
T Consensus 11 ~tP~G~~~~lp~GaT~~D~A~~Ih~ 35 (78)
T 3hvz_A 11 FTPKGDVISLPIGSTVIDFAYAIHS 35 (78)
T ss_dssp ECTTSCEEEEETTCBHHHHHHHHCH
T ss_pred ECCCCCEEEecCCCCHHHHHHHhhh
Confidence 4578999999999999999998854
No 81
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=27.23 E-value=48 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.2
Q ss_pred CCCCCEEEECcCHHHHHHHHHHH
Q 029472 37 ITSGMVVGLGSGQASAMAIEYMG 59 (193)
Q Consensus 37 I~dg~tI~LdsGsT~~~la~~L~ 59 (193)
+++|+.+-+..|+|+..+++.+.
T Consensus 7 ~p~g~~~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 7 TPKGEIKRLPQGATALDFAYSLH 29 (73)
T ss_dssp CTTCCEEEECTTCBHHHHHHHHC
T ss_pred cCCCCEEEcCCCCcHHHHHHHHh
Confidence 46899999999999999999884
No 82
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=26.72 E-value=1.1e+02 Score=27.31 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=40.9
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHC-CCcEEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA-GIPLDQ 92 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~-~i~v~~ 92 (193)
.+.+|.+|.|.....+++.|.+. | .++++|.++-+....+... +++++.
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~---~--~~vvvid~~~~~~~~~~~~~~~~~i~ 176 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESR---N--HLFVVVTDNYDQALHLEEQEGFKVVY 176 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTT---T--CCEEEEESCHHHHHHHHHSCSSEEEE
T ss_pred CCeEEEECCChHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHhcCCeEEE
Confidence 56799999999999999999753 2 3799999999888888777 887765
No 83
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=26.35 E-value=1e+02 Score=24.73 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=29.0
Q ss_pred CCCCCE-EEE--CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHH
Q 029472 37 ITSGMV-VGL--GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 83 (193)
Q Consensus 37 I~dg~t-I~L--dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l 83 (193)
|++|++ +.| |+|+|+.++|+..... | .+..|=-|-.....+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~---G---~V~avD~s~~~~~~l 118 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPR---G---RIYGVEFAPRVMRDL 118 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTT---C---EEEEEECCHHHHHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCC---c---eEEEEeCCHHHHHHH
Confidence 789994 455 4557999999988642 2 577777777766554
No 84
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=26.23 E-value=1.1e+02 Score=25.25 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=43.0
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCCCcccEEEec
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDD 105 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~~~~D~af~g 105 (193)
...++.||+|-+...++..|.+. | .+++|+.-+..-+..+...+++...+.+....|+.|-.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~---G--~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVIna 179 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQ---G--LQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINA 179 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT---T--CEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEc
Confidence 34477889999999999999864 3 37998877766666555556665555554356766643
No 85
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=25.29 E-value=1.5e+02 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=24.4
Q ss_pred CeEEEcCcHHHHHHHHHCCCcEEEcCC
Q 029472 69 DVIGIPTSVASANEAAVAGIPLDQYRD 95 (193)
Q Consensus 69 ~lTVVTnSl~ia~~l~~~~i~v~~l~~ 95 (193)
+.++|||.......+...|++++.+..
T Consensus 106 ~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 106 NSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp TCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred CCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 689999999999999999999998865
No 86
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=24.94 E-value=1.9e+02 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc
Q 029472 38 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS 76 (193)
Q Consensus 38 ~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS 76 (193)
.++.++.+|+|-+..++|..|.+. | .++|+|..+
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~---g--~~Vtlv~~~ 318 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASL---G--GDVTVMVRS 318 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT---T--CCEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---C--CEEEEEECC
Confidence 467899999999999999999864 3 379999864
No 87
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=24.09 E-value=1.4e+02 Score=23.01 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=42.2
Q ss_pred EEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCC-CCcccEEEeccc
Q 029472 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD-TSQIDFAFDDAD 107 (193)
Q Consensus 42 tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~-~~~~D~af~gad 107 (193)
+.++|+|..-..+++.|.+. | .+++++..+-..+..+...++.+..+.+ ....|+.|+.+.
T Consensus 31 I~iiG~G~~G~~la~~l~~~---g--~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 31 VGILGSGDFARSLATRLVGS---G--FKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVF 92 (215)
T ss_dssp EEEECCSHHHHHHHHHHHHT---T--CCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSC
T ss_pred EEEEccCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCC
Confidence 66789999999999999753 2 2788888887766666555666543322 125788887764
No 88
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=23.18 E-value=1.2e+02 Score=23.71 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=39.8
Q ss_pred CCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEE
Q 029472 38 TSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQ 92 (193)
Q Consensus 38 ~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~ 92 (193)
.+-|.|.+-|++|+..+.+.+.- +.++++++=+-.++..|.+.|+++..
T Consensus 160 ~~~d~v~ftS~s~v~~~~~~~~~------~~~~~~~aIG~~Ta~~l~~~G~~v~v 208 (229)
T 3p9z_A 160 KEKSILIFTAISHAKAFLHYFEF------LENYTAISIGNTTALYLQEQGIPSYI 208 (229)
T ss_dssp CTTCEEEECSHHHHHHHHHHSCC------CTTCEEEESSHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECHHHHHHHHHHhCc------ccCCEEEEECHHHHHHHHHcCCCcee
Confidence 45689999999999999887742 13688999999999999988887653
No 89
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=22.13 E-value=2.3e+02 Score=24.84 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=35.0
Q ss_pred CCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCc-------HHHHH----HHHHCCCcEE
Q 029472 39 SGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTS-------VASAN----EAAVAGIPLD 91 (193)
Q Consensus 39 dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnS-------l~ia~----~l~~~~i~v~ 91 (193)
++.++.+|+|-+..++|..|.+. | .++|+|..+ -.++. .+.+.|++++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~---G--~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~ 268 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGI---G--LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFI 268 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT---T--CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHc---C--CeEEEEecccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 66799999999999999999864 3 379999753 23333 3456777654
No 90
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=21.84 E-value=83 Score=22.85 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=24.6
Q ss_pred CEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC
Q 029472 41 MVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT 75 (193)
Q Consensus 41 ~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn 75 (193)
+++.+|+|-+-.++|..|.+. | .++|+|..
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~---g--~~v~lie~ 32 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARA---G--LKVLVLDG 32 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHT---T--CCEEEEEC
T ss_pred eEEEECCCHHHHHHHHHHHHC---C--CcEEEEeC
Confidence 578999999999999999864 2 37888853
No 91
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=21.54 E-value=2.3e+02 Score=20.30 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCCCC--EEEECc--CHHHHHHHHHHHhHhhcCCCCCeEEEcC-cHHHHHH
Q 029472 23 SVLFRAAKHTVDTYITSGM--VVGLGS--GQASAMAIEYMGRQLRAGALKDVIGIPT-SVASANE 82 (193)
Q Consensus 23 ~ekk~iaa~~A~~~I~dg~--tI~Lds--GsT~~~la~~L~~~~~~~~~~~lTVVTn-Sl~ia~~ 82 (193)
++-.+.+ +.+.+-+.+++ .|+.|- ||-.....+.+.+. .++.|||. +++...+
T Consensus 42 ~~~~~~i-~~~i~~~~~~~gvliLtDl~GGSp~n~a~~~~~~~------~~v~vi~GvNlpmlle 99 (135)
T 1pdo_A 42 ETLIEKY-NAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDK------EHYEVIAGVNIPMLVE 99 (135)
T ss_dssp HHHHHHH-HHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTTC------TTEEEEESCCHHHHHH
T ss_pred HHHHHHH-HHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHhcc------CCEEEEeCCCHHHHHH
Confidence 3444555 56666666544 555588 55444444444321 36888876 4554443
No 92
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=21.34 E-value=1.4e+02 Score=20.37 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=33.2
Q ss_pred CCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEE
Q 029472 40 GMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLD 91 (193)
Q Consensus 40 g~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~ 91 (193)
..++.+|.|..-..+++.|... | .+++++..+-.-...+...+..++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~---g--~~v~~~d~~~~~~~~~~~~~~~~~ 53 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM---G--HEVLAVDINEEKVNAYASYATHAV 53 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCCEEEESCHHHHHTTTTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHhCCEEE
Confidence 4588899999999999999763 2 368888887665554444454443
No 93
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=21.28 E-value=2e+02 Score=23.05 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhhc-CCCCCEEEECcCHHHHHHHHHHHhHhhcCCCCCeEEEcC------------cHHHHHHHHHCC
Q 029472 21 GSSVLFRAAKHTVDTY-ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPT------------SVASANEAAVAG 87 (193)
Q Consensus 21 ~~~ekk~iaa~~A~~~-I~dg~tI~LdsGsT~~~la~~L~~~~~~~~~~~lTVVTn------------Sl~ia~~l~~~~ 87 (193)
|.++--+++.+.|.++ |+ .=+|+=-+|.|...+++.+.. -+|.+||. +-++...|...|
T Consensus 27 NT~~tl~la~era~e~~Ik-~iVVAS~sG~TA~k~~e~~~~-------i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G 98 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIK-HLVVASSYGDTAMKALEMAEG-------LEVVVVTYHTGFVREGENTMPPEVEEELRKRG 98 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCC-EEEEECSSSHHHHHHHHHCTT-------CEEEEEECCTTSSSTTCCSSCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCC-EEEEEeCCChHHHHHHHHhcC-------CeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCC
Confidence 4455556665777776 43 224444788999888887622 27999994 567778888899
Q ss_pred CcEEEc
Q 029472 88 IPLDQY 93 (193)
Q Consensus 88 i~v~~l 93 (193)
++|+.-
T Consensus 99 ~~V~t~ 104 (201)
T 1vp8_A 99 AKIVRQ 104 (201)
T ss_dssp CEEEEC
T ss_pred CEEEEE
Confidence 988864
No 94
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=21.09 E-value=3.1e+02 Score=22.39 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=38.8
Q ss_pred cCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCC----CcccEEEecccc
Q 029472 36 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT----SQIDFAFDDADI 108 (193)
Q Consensus 36 ~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~----~~~D~af~gadg 108 (193)
-+++|++|.+ |+|..-...++.+... | -++.+++.|-.-...+...|...+. .+. ..+|++|+.+.+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~---G--a~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM---G--AEVSVFARNEHKKQDALSMGVKHFY-TDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT---T--CEEEEECSSSTTHHHHHHTTCSEEE-SSGGGCCSCEEEEEECCCS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---C--CeEEEEeCCHHHHHHHHhcCCCeec-CCHHHHhcCCCEEEECCCc
Confidence 4689997766 7776556655555432 3 2566666554444455667755433 211 147899886644
No 95
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=20.61 E-value=3.7e+02 Score=22.36 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=38.3
Q ss_pred cCCCCCEEEE-CcCHHHHHHHHHHHhHhhcCCCCCeEEEcCcHHHHHHHHHCCCcEEEcCCC-------------CcccE
Q 029472 36 YITSGMVVGL-GSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDT-------------SQIDF 101 (193)
Q Consensus 36 ~I~dg~tI~L-dsGsT~~~la~~L~~~~~~~~~~~lTVVTnSl~ia~~l~~~~i~v~~l~~~-------------~~~D~ 101 (193)
-+++|++|.+ |+|..-...++..+.. |. ..+.++..|-.-...+...|..++...+. ..+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~---Ga-~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLL---GA-AVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---TC-SEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---CC-CeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 4679997766 7766555555554432 21 13555555554445556677665543210 14788
Q ss_pred EEeccc
Q 029472 102 AFDDAD 107 (193)
Q Consensus 102 af~gad 107 (193)
+|+.+.
T Consensus 258 vid~~G 263 (398)
T 1kol_A 258 AVDAVG 263 (398)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 888664
No 96
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=20.30 E-value=1.3e+02 Score=23.18 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=32.1
Q ss_pred ECcCHHHHHHHHHHHhHhhcCCCCC---eEEEcC-cHHHHHHHHHCCCcEEEcCCC
Q 029472 45 LGSGQASAMAIEYMGRQLRAGALKD---VIGIPT-SVASANEAAVAGIPLDQYRDT 96 (193)
Q Consensus 45 LdsGsT~~~la~~L~~~~~~~~~~~---lTVVTn-Sl~ia~~l~~~~i~v~~l~~~ 96 (193)
+++|.|....++.|.+. |. +. +++++- +......+...+++++.+-..
T Consensus 127 itTG~Tl~~a~~~L~~~---Ga-~~v~v~~l~~~~~~~~~~~l~~~~~~~~~l~~~ 178 (211)
T 2aee_A 127 ISTGGSVLDAAAAASRE---GA-DVLGVVAIFTYELPKASQNFKEAGIKLITLSNY 178 (211)
T ss_dssp ESSCHHHHHHHHHHHHT---TC-EEEEEEEEEECCCHHHHHHHHHHTCCEEESCCH
T ss_pred ccchHHHHHHHHHHHHC---CC-cEEEEEEEEecccccHHHHHHhCCCCEEEEeeH
Confidence 47999999999999764 32 12 334443 345555667778888877553
Done!