RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029472
(193 letters)
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium; 2.09A {Plasmodium falciparum}
Length = 244
Score = 88.0 bits (219), Expect = 8e-22
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 17/160 (10%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
A VD Y+ S M +GLG+G +E + L++G LKDV+ IPTS+ + +A
Sbjct: 15 IVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKL 74
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
GIPL S ID D D I L+ KG ++++EK V +++ L+
Sbjct: 75 GIPLTTLEKHSNIDITIDGTDEIDLNLNLI--------KGRGGALVREKLVASSSSLLII 126
Query: 145 MVSENQYKGVLDG-----SVPVLVQPVNWMETAEEIDDLF 179
+ E+ K +G +VP+ + + + E + ++
Sbjct: 127 IGDES--KLCTNGLGMTGAVPIEILTFGYEKIIENLLKIY 164
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 85.6 bits (213), Expect = 5e-21
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AAK + +I MV+GLG+G +A I+ +G +L+ G + D++G+PTS + A
Sbjct: 9 IAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEH 67
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
IP+ ID A D AD + L+ KG ++ EK + A +
Sbjct: 68 DIPIASLDQVDAIDVAVDGADEVDPNLNLI--------KGRGAALTMEKIIEYRAGTFIV 119
Query: 145 MVSENQYKGVLDGS--VPVLVQPVNWMETAEEIDDL 178
+V E + L VP+ V P W EE+
Sbjct: 120 LVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIF 155
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 80.2 bits (199), Expect = 5e-19
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AA + Y+ GMVVGLG+G + A+ + R+LR G LK V+G+PTS A+ A
Sbjct: 11 EAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKRE 69
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
GIPL +D A D AD I L+ KG ++++EK V A + +
Sbjct: 70 GIPLVDL-PPEGVDLAIDGADEIAPGLALI--------KGMGGALLREKIVERVAKEFIV 120
Query: 145 MVSENQYKGVLDGS-VPVLVQPVNWMETAEEIDDL 178
+ + VL VPV + P + T + I DL
Sbjct: 121 IADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADL 155
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 77.9 bits (193), Expect = 3e-18
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
A Y+ GM+VGLG+G + +E +GR+++ L VIG+ TS + +A
Sbjct: 7 IAGVRAAQ-YVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQAL 64
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
GIPL + +D D AD + + KG +++ EK V ++
Sbjct: 65 GIPLKSIDEVDSVDVTVDGADEVDPNFNGI--------KGGGGALLMEKIVGTLTKDYIW 116
Query: 145 MVSENQYKGVLDG-SVPVLVQPVNWMETAEEIDDL 178
+V E++ L +PV V E +
Sbjct: 117 VVDESKMVDTLGAFRLPVEVVQYGAERLFREFEKK 151
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 77.1 bits (191), Expect = 8e-18
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
+ AK V + GMV+GLG+G +A+ I +G ++R L V GIPTS + A
Sbjct: 9 KVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQY 66
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146
IPL + +D AFD AD +EE TL + G G QEK V A++ V +V
Sbjct: 67 EIPLVTLDEYD-VDIAFDGADEVEETTLFLIKG-----GGGCHTQEKIVDYNANEFVVLV 120
Query: 147 SENQYKGVLDGS--VPVLVQPVNWMETAEEIDDL 178
E++ L +PV V P + + ++
Sbjct: 121 DESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEM 154
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 76.8 bits (190), Expect = 1e-17
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AA IT+ + +G+G+G IE + K + +S S +
Sbjct: 15 LAATEAAK-SITTEITLGVGTGSTVGFLIEELVNY----RDKIKTVVSSSEDSTRKLKAL 69
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
G + +ID D AD L+ KG ++ +EK + AA K +
Sbjct: 70 GFDVVDLNYAGEIDLYIDGADECNNHKELI--------KGGGAALTREKICVAAAKKFIC 121
Query: 145 MVSENQYKGVLDG-SVPVLVQPVNWMETAEEIDDL 178
++ E++ L +P+ V P+ A +I L
Sbjct: 122 IIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKL 156
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 76.0 bits (188), Expect = 1e-17
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
+ Y+ G +VG+G+G +A I+ +G G + + +S AS +
Sbjct: 9 AVGWAALQ-YVQPGTIVGVGTGSTAAHFIDALGT--MKG--QIEGAVSSSDASTEKLKSL 63
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146
GI + + + D AD I G + + G G ++ +EK + + A+K + +
Sbjct: 64 GIHVFDLNEVDSLGIYVDGADEI-NGHMQMIKG-----GGAALTREKIIASVAEKFICIA 117
Query: 147 SENQYKGVLDG-SVPVLVQPVNWMETAEEIDDL 178
++ +L +PV V P+ A ++ L
Sbjct: 118 DASKQVDILGKFPLPVEVIPMARSAVARQLVKL 150
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 76.0 bits (188), Expect = 2e-17
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AA+ + Y+ + +VG+GSG IE +G K + S S
Sbjct: 9 LAAQAALQ-YVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKESEELLRKQ 63
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
GI + D S +D D AD I + ++ KG ++ +EK V A K +
Sbjct: 64 GIEVFNANDVSSLDIYVDGADEINPQKMMI--------KGGGAALTREKIVAALAKKFIC 115
Query: 145 MVSENQYKGVLDGS--VPVLVQPVNWMETAEEIDDL 178
+V ++ VL + +PV V P+ + ++ L
Sbjct: 116 IVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAAL 151
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 76.5 bits (189), Expect = 2e-17
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AA ++ ++ M +G+GSG I +G ++ G V + TS S
Sbjct: 30 MAALKALE-FVEDDMRLGIGSGSTVNEFIPLLGERVANG--LRVTCVATSQYSEQLCHKF 86
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
G+P+ ++D D AD I E TL+ KG +++ EK V +A+ +
Sbjct: 87 GVPISTLEKIPELDLDIDGADEIGPEMTLI--------KGGGGALLHEKIVASASRAMFV 138
Query: 145 MVSENQYKGVLDG-SVPVLVQPVNWMETAEEIDDLF 179
+ E + L ++P+ V P T I+
Sbjct: 139 IADETKMVKTLGAFALPIEVNPFGIHATRIAIEKAA 174
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 74.6 bits (184), Expect = 9e-17
Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 16/155 (10%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AA++ V + G V+G+G+G + I+ + + + +SVA+
Sbjct: 21 AAARY-VTDNVPQGAVIGVGTGSTANCFIDALAAVKD----RYRGAVSSSVATTERLKSH 75
Query: 87 GIPLDQYRDTSQIDFAFDDAD-IIEEGTLVAVIGRQQPKGD-ESIIQEKSVLNAADKLVF 144
GI + + + D AD I E G ++ KG ++ +EK V + A+ V
Sbjct: 76 GIRVFDLNEIESLQVYVDGADEIDESGAMI--------KGGGGALTREKIVASVAETFVC 127
Query: 145 MVSENQYKGVLDGS-VPVLVQPVNWMETAEEIDDL 178
+ ++ +L +PV V P+ + L
Sbjct: 128 IADASKRVAMLGQFPLPVEVVPMARTAIGRRLAAL 162
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 71.9 bits (177), Expect = 1e-15
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 22/191 (11%)
Query: 5 MIRGSSSSDSSRALSNGSSVL-FRAAKHTVD--TYITSGMVVGLGSGQASAMAIEYMGRQ 61
M G D+ +L N AA VD ++G+GSG E +G+
Sbjct: 1 MAAGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQY 60
Query: 62 LRAGALK----DVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDAD-IIEEGTLVA 116
L I IPT S N + L +ID AFD AD + E L+
Sbjct: 61 LHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLI- 119
Query: 117 VIGRQQPKGD-ESIIQEKSVLNAADKLVFMVSENQYKGVLDGS-----VPVLVQPVNWME 170
KG + QEK V +A + + + G VP+ + P +++
Sbjct: 120 -------KGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVR 172
Query: 171 TAEEIDDLFIG 181
++ +
Sbjct: 173 VKNDLLEQLHA 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 4e-05
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 92 QYRDTSQI---DFA--FDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146
QY+D + F FD D+ + +++ +++ + II K ++ +L + +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDM--PKSILSKEEI---DHIIMSKDAVSGTLRLFWTL 71
Query: 147 SENQYKGVLDGSVPVLVQPVNWMETA----------------EEIDDLFIGDAEVFSIPY 190
Q + V VL ++ + E+ D L+ D +VF+ Y
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFA-KY 129
Query: 191 N 191
N
Sbjct: 130 N 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 3e-04
Identities = 41/235 (17%), Positives = 74/235 (31%), Gaps = 89/235 (37%)
Query: 6 IRGSSSSDS-SRALSNGSSVLF----RAAKHTVDTYITSGMV---VGLGSGQASAM-AIE 56
I + S +S ++ +VLF R + +T + ++ + G S M +I
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI- 341
Query: 57 YMGRQLRAGALKDVIG-----IPT----SVA---SANEAAVAGIPLDQYR---------- 94
L ++D + +P ++ A V+G P Y
Sbjct: 342 ---SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 95 ----DTSQIDFA---------F------------DDA-DIIEEGTLVAVIGRQQPKGDES 128
D S+I F+ F A D+I + D
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK--------------D-- 442
Query: 129 IIQEKSVLNAADKLVFMVSENQYKG----VLDGSVP------VLVQPVNWMETAE 173
+ + +V A + V + + G VL GS+ ++ PV W T +
Sbjct: 443 -LVKNNVSFNAKDIQIPV-YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Score = 37.3 bits (86), Expect = 0.002
Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 49/163 (30%)
Query: 22 SSVLFRAAKHTVD-TYITSGMVVGLGSGQASAMAIEY-MGRQLRAGALKDVIGIPTSVA- 78
+S FR+ K + T T Q + +E L++ K +I + A
Sbjct: 1715 TSYTFRSEKGLLSATQFT----------QPALTLMEKAAFEDLKS---KGLIPADATFAG 1761
Query: 79 ------SANEAAVAGIPLDQYRDTSQIDFAFDDA-DIIEE-GTLV--AVIGRQQPKGDES 128
+A A++A + + + +++ G + AV + + +
Sbjct: 1762 HSLGEYAAL-ASLADV------------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 129 II----QEKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVN 167
+I + + + L ++V + G + V+ VN
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKR---TGWL---VEIVN 1845
Score = 31.2 bits (70), Expect = 0.23
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTL---VAVIGRQQPKGDESIIQEKSVLNAADKLV 143
G+ +D Y+ + ++ AD + T + I P ++ +K
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-------NLTIHFGGEKGK 1682
Query: 144 FMVSEN----QYKGVLDGSVPVLVQPVNWMETAEEIDDL-FIGDAEVFSIPYN 191
+ EN ++ ++DG + + + E E F + + S
Sbjct: 1683 -RIRENYSAMIFETIVDGKLK--TEKIF-KEINEHSTSYTFRSEKGLLSATQF 1731
Score = 28.9 bits (64), Expect = 1.2
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 34/111 (30%)
Query: 61 QLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRD-------TSQIDFAFDD--ADIIEE 111
L G+L+ V+ +PT+ Q ++ FA DD E
Sbjct: 10 TLSHGSLEHVLLVPTASFFI---------ASQLQEQFNKILPEPTEGFAADDEPTTPAE- 59
Query: 112 GTLVA----VIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGS 158
LV + Q VL L EN Y L+G+
Sbjct: 60 --LVGKFLGYVSSLVEPSKVG--QFDQVL----NLCLTEFENCY---LEGN 99
Score = 28.9 bits (64), Expect = 1.3
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 82/194 (42%)
Query: 3 KTMIRG--SSSSDSSRALSNGS-SVLFRAAKHTVDTYITSGMVVGLGSGQASAMAI---- 55
K +I+ ++ + R S S LFRA G A +AI
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVG----------------EGNAQLVAIFGGQ 163
Query: 56 ----EYMGRQLR------AGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDFAFDD 105
+Y +LR + D+I +A L R T + F
Sbjct: 164 GNTDDYF-EELRDLYQTYHVLVGDLI---------KFSAETLSEL--IRTTLDAEKVF-- 209
Query: 106 ADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGSVPV---- 161
+G + L + Y L S+P+
Sbjct: 210 -----------------TQG----LNILEWLENPSN----TPDKDY---LL-SIPISCPL 240
Query: 162 --LVQPVNWMETAE 173
++Q +++ TA+
Sbjct: 241 IGVIQLAHYVVTAK 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.14
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 12/42 (28%)
Query: 132 EKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVNWMETAE 173
EK A KL + K D S P L + T E
Sbjct: 18 EK---QALKKL-----QASLKLYADDSAPALA--IK--ATME 47
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 28.6 bits (63), Expect = 1.0
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
+ A + + G GSG + +A E RAG L V I +E
Sbjct: 30 KGAHLVSEAVMNGGRFYVFGSGHSHMIAEEIYN---RAGGLALVTAILPPELMLHERPNK 86
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGR 120
L+ + ++ + ++ +I
Sbjct: 87 STYLE---RIEGLSKSYLKLHQVTNKDVIMIISN 117
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 27.1 bits (61), Expect = 3.3
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 50 ASAMAIEYMGRQLRAGALKDVIGIPTSVASANEA 83
ASA A++ + A +D + +V AN
Sbjct: 45 ASATALKTLSAGFAAAPDRDGLL--EAVQQANLR 76
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 27.3 bits (61), Expect = 3.6
Identities = 24/134 (17%), Positives = 36/134 (26%), Gaps = 21/134 (15%)
Query: 26 FRAAKHT-----VDTYITSGMVVGLGSGQ---------ASAMAIEYMGRQLRAGALKDVI 71
A K+T Y G V+G+G+GQ A A + R
Sbjct: 423 SIAVKYTQSNSVC--YAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFK 480
Query: 72 GIPTSVASANEAAVA---GIPLDQYRDTSQIDFAFDDADI--IEEGTLVAVIGRQQPKGD 126
+N I D+ Q F A + E+ +A + D
Sbjct: 481 AGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSD 540
Query: 127 ESIIQEKSVLNAAD 140
+V A
Sbjct: 541 AFFPFRDNVDRAKR 554
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 26.3 bits (59), Expect = 6.3
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 75 TSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGT 113
+ + + +AG +++Y D + +F +D I E
Sbjct: 182 SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDV 220
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 26.3 bits (59), Expect = 6.5
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 105 DADI-IEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVF 144
AD+ I++G + IG + ++AA + VF
Sbjct: 18 RADLGIKDGKITQ-IGGALGPAER-------TIDAAGRYVF 50
>3cje_A OSMC-like protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Length = 167
Score = 25.8 bits (56), Expect = 7.9
Identities = 7/59 (11%), Positives = 21/59 (35%)
Query: 83 AAVAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADK 141
A + + ++ + + A + E + + I +++++ AA K
Sbjct: 82 AKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKK 140
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799,
streptococcus pneumonia PSI, protein structure
initiative; 1.65A {Streptococcus pneumoniae} SCOP:
c.124.1.8
Length = 266
Score = 25.9 bits (57), Expect = 8.0
Identities = 6/50 (12%), Positives = 20/50 (40%)
Query: 12 SDSSRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQ 61
++ + S + + A + I M +G G++ + ++ + +
Sbjct: 30 NEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK 79
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding,
autocatal cleavage, DNA replication, DNA-binding,
endonuclease; 1.90A {Mycobacterium tuberculosis}
Length = 200
Score = 25.7 bits (57), Expect = 8.0
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 109 IEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGSVPVLVQPVNW 168
+E GT V G +G + V++ A ++ V++ + +L
Sbjct: 136 VEAGTRVVQYGYAGAEGADV----AEVVDRAQAEIYDVADRRLSEDFVALEDLL------ 185
Query: 169 METAEEIDDLF 179
T +EID +
Sbjct: 186 QPTMDEIDAIA 196
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 25.9 bits (58), Expect = 8.0
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 75 TSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEGT 113
+ V + A V G+PL ++ + + +D I+EG
Sbjct: 175 SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGV 213
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 26.0 bits (57), Expect = 8.6
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMG----RQLRAGALKDVIGIPTSVASANE 82
++ + GM V +G GQ A ++ G R R + + +A+
Sbjct: 43 ALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIVTQRNARFVSAIGGTHRSGDIINADH 102
Query: 83 AA 84
Sbjct: 103 IC 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.356
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,900,365
Number of extensions: 176640
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 53
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.8 bits)