RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029472
(193 letters)
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 68.6 bits (167), Expect = 9e-16
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AAK + +I MV+GLG+G +A I+ +G +L+ G + D++G+PTS + A
Sbjct: 9 IAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEH 67
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146
IP+ ID A D AD ++ + ++ EK + A + +V
Sbjct: 68 DIPIASLDQVDAIDVAVDGADEVDPNLNL------IKGRGAALTMEKIIEYRAGTFIVLV 121
Query: 147 SENQYKGVLDGSVPVLVQPVNWMETAEEID 176
E + L ++ V E ++++
Sbjct: 122 DERKLVDYL-DIADIV--IVGTREGVKKLE 148
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 64.0 bits (155), Expect = 6e-14
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
AA+ + Y+ + +VG+GSG IE +G K + S S
Sbjct: 9 LAAQAALQ-YVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKESEELLRKQ 63
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146
GI + D S +D D AD I ++ G ++ +EK V A K + +V
Sbjct: 64 GIEVFNANDVSSLDIYVDGADEINPQKMM------IKGGGAALTREKIVAALAKKFICIV 117
Query: 147 SENQYKGVLDGSVPVLVQPVNWMETAEEID 176
++ VL V V E A+ ID
Sbjct: 118 DSSKQVDVLFALRGADVVIVGTPEGAKVID 147
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 58.8 bits (142), Expect = 3e-12
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 42 VVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQIDF 101
+VG+G+G +A I+ +G + + +S AS + GI + + +
Sbjct: 1 IVGVGTGSTAAHFIDALGTMKG----QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGI 56
Query: 102 AFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDG---S 158
D AD I + G ++ +EK + + A+K + + ++ +L
Sbjct: 57 YVDGADEINGHMQMIKGGGA------ALTREKIIASVAEKFICIADASKQVDILANRGAD 110
Query: 159 VPVLVQPVNW 168
V ++ P
Sbjct: 111 VALIGTPDGV 120
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 59.0 bits (142), Expect = 4e-12
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVA 86
+ A H Y+ GMVVGLG+G + A+ + R+LR G LK V+G+PTS A+ E A
Sbjct: 8 KEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRAT-EELAKR 66
Query: 87 GIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMV 146
+D A D AD I G + ++ + + A + + +
Sbjct: 67 EGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVER------VAKEFIVIA 120
Query: 147 SENQYKGVLDGS----VPVLVQPVNWMET 171
+ VL ++ P E
Sbjct: 121 DHTKKVPVLLFVGMATRALVAGPFGVEEL 149
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 28.0 bits (62), Expect = 0.69
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 11/151 (7%)
Query: 27 RAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDV--IGIPTSVASANEAA 84
RAA + + +V + G E M + L V G
Sbjct: 41 RAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGLGEDVKNQANT 100
Query: 85 VAGIPLDQYRDTSQIDFAFDDADIIEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVF 144
+ ++ T ++ F +++ + S+ + + + +A LV
Sbjct: 101 ICAHMAEKASGTYRLLFVPGQLSQGAYSSIIE---------EPSVKEVLNTIKSASMLVH 151
Query: 145 MVSENQYKGVLDGSVPVLVQPVNWMETAEEI 175
+ E + + ++ ++ + E
Sbjct: 152 GIGEAKTMAQRRNTPLEDLKKIDDNDAVTEA 182
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 27.7 bits (61), Expect = 0.87
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 24 VLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGI 73
++ +D + G +VG G+A + +E + + ++ L V I
Sbjct: 34 MMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPII 83
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 27.3 bits (60), Expect = 1.3
Identities = 6/50 (12%), Positives = 20/50 (40%)
Query: 12 SDSSRALSNGSSVLFRAAKHTVDTYITSGMVVGLGSGQASAMAIEYMGRQ 61
++ + S + + A + I M +G G++ + ++ + +
Sbjct: 27 NEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK 76
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae,
tu901 [TaxId: 1932]}
Length = 87
Score = 24.6 bits (53), Expect = 3.4
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 157 GSVPVLVQPVNWMETAEEI 175
G++PV + VNW+E+ +
Sbjct: 30 GTMPVAIYGVNWVESGNNV 48
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 25.6 bits (55), Expect = 4.2
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 73 IPTSVASANEAAVAGIPLDQYRDTSQIDFAFDDADIIEEG 112
+ ++E + L + AFD ++II +
Sbjct: 152 HGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKA 191
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 320
Score = 25.5 bits (56), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 80 ANEAAVAGIPLDQY-RDTSQIDFAFD----DADIIEEG 112
A +A G+P+ Y R+ ++ AF+ DAD I G
Sbjct: 276 AWQAWRDGVPVLDYAREHKELARAFESFPGDADQIYPG 313
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Length = 74
Score = 23.6 bits (51), Expect = 6.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 159 VPVLVQPVNWMETAEEIDDL 178
VPV + P + T + I DL
Sbjct: 5 VPVEIVPFGYRATLKAIADL 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.356
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 661,466
Number of extensions: 28221
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 16
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)