Query 029473
Match_columns 193
No_of_seqs 106 out of 497
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 4.4E-76 9.4E-81 541.7 16.6 191 2-193 437-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 1.3E-64 2.9E-69 457.8 14.9 192 2-193 401-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 3.6E-53 7.8E-58 394.9 10.8 149 2-151 371-521 (521)
4 PF08055 Trp_leader1: Tryptoph 65.0 3 6.5E-05 21.7 0.6 9 115-123 5-13 (18)
5 PF06570 DUF1129: Protein of u 58.6 88 0.0019 25.8 8.7 104 36-143 60-170 (206)
6 PF12823 DUF3817: Domain of un 51.0 7 0.00015 28.8 0.8 26 45-70 62-87 (92)
7 PRK09546 zntB zinc transporter 41.5 25 0.00055 30.9 2.9 23 3-25 266-288 (324)
8 TIGR00383 corA magnesium Mg(2+ 25.0 1.1E+02 0.0025 26.4 4.3 24 2-25 259-282 (318)
9 COG5102 SFT2 Membrane protein 25.0 1.7E+02 0.0038 24.4 5.0 48 128-177 77-124 (201)
10 PRK11085 magnesium/nickel/coba 20.5 1.7E+02 0.0036 26.2 4.4 24 2-25 257-280 (316)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-76 Score=541.73 Aligned_cols=191 Identities=38% Similarity=0.842 Sum_probs=188.5
Q ss_pred chhhhHHhhhcchhhhhhhhhcccccCCCCCccCCCCCCCCCCCCCcCCcchhHHhhhhhhHHHHHHHHHHHHHhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREILPLPWYQKSPCQMFIVGLLSFSIIALELHHLYASLWGYK 81 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~GilPF~~i~vEl~~i~~slW~~~ 81 (193)
.++++||+||+||+++||++|+| ++++|+|+||||||||||+||||+|+.+.++++|++||+++++||+||++|+|.||
T Consensus 437 ~ll~LwF~isVPLsf~G~y~g~k-k~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~q 515 (628)
T KOG1278|consen 437 ALLFLWFGISVPLSFVGGYFGFK-KPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQ 515 (628)
T ss_pred HHHHHHHHhhhhHHHhhHHhhcc-CCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999 57889999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCceeeeeeecCChhHHHHHHHHHHHhh-hhcccCcchhhHHHHHH
Q 029473 82 IFTLPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYF-RSNMSGFLQLSFFLGYN 160 (193)
Q Consensus 82 ~yy~fgfL~~~~iil~i~~~~vsI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~-~~~~~g~~~~~lyf~ys 160 (193)
+||+||||++++++|+++|+|+||++||+|||+||||||||||++||++|+|+|+||++|++ |++++|++++++|+|||
T Consensus 516 fYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYs 595 (628)
T KOG1278|consen 516 FYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYS 595 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 029473 161 VAMCYAFFLILGSVSFRASMIFVRRIYRVVKSE 193 (193)
Q Consensus 161 ~l~s~~~~l~~GsiGflas~~Fv~~IY~~iK~d 193 (193)
++++++++++||||||+||+|||||||+++|+|
T Consensus 596 li~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 596 LIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence 999999999999999999999999999999999
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-64 Score=457.81 Aligned_cols=192 Identities=41% Similarity=0.900 Sum_probs=189.6
Q ss_pred chhhhHHhhhcchhhhhhhhhcccccCCCCCccCCCCCCCCCCCCCcCCcchhHHhhhhhhHHHHHHHHHHHHHhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWFRSEFQAPSALNRYPREILPLPWYQKSPCQMFIVGLLSFSIIALELHHLYASLWGYK 81 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~GilPF~~i~vEl~~i~~slW~~~ 81 (193)
.++++|++|..||+++|++.|++++.+++.|||++++||+||++|||++|.+.+.++|++||++|++|++||++|.|.+|
T Consensus 401 ~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIEmYfIFtSfW~yk 480 (593)
T KOG1277|consen 401 VVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFIEMYFIFTSFWGYK 480 (593)
T ss_pred HHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhhhHHHHHHHHhhhh
Confidence 46889999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCceeeeeeecCChhHHHHHHHHHHHhh-hhcccCcchhhHHHHHH
Q 029473 82 IFTLPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYF-RSNMSGFLQLSFFLGYN 160 (193)
Q Consensus 82 ~yy~fgfL~~~~iil~i~~~~vsI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~-~~~~~g~~~~~lyf~ys 160 (193)
+||.|||++++++||+++++|+||++||+||++||||||||||+.+||+|+|+.+||+||++ |++|+|+.|+..|||||
T Consensus 481 iYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yvy~Ys~yYy~~ktkMsG~fQTsfyFGYm 560 (593)
T KOG1277|consen 481 IYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYVYLYSFYYYFFKTKMSGLFQTSFYFGYM 560 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeehhhhHHHHHhhhccccchhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 029473 161 VAMCYAFFLILGSVSFRASMIFVRRIYRVVKSE 193 (193)
Q Consensus 161 ~l~s~~~~l~~GsiGflas~~Fv~~IY~~iK~d 193 (193)
+++|..+|++||+|||.++..||||||+|+|+|
T Consensus 561 ~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 561 AVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.6e-53 Score=394.87 Aligned_cols=149 Identities=42% Similarity=0.888 Sum_probs=144.4
Q ss_pred chhhhHHhhhcchhhhhhhhhcccccCC-CCCccCCCCCCCCCCCCCcCCcchhHHhhhhhhHHHHHHHHHHHHHhhhcc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWFRSEF-QAPSALNRYPREILPLPWYQKSPCQMFIVGLLSFSIIALELHHLYASLWGY 80 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~~~~~-~~P~~~n~ipR~IP~~~~y~~~~~~~l~~GilPF~~i~vEl~~i~~slW~~ 80 (193)
.++++|++|++||+++||++|+|. ++. |+|+|+|++|||||+||||+++++.++++|++||+++++|++|+++|+|.+
T Consensus 371 ~l~~lw~~v~~PL~~lG~~~g~k~-~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~ 449 (521)
T PF02990_consen 371 FLIALWFFVSIPLTFLGGYFGFKN-PPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSN 449 (521)
T ss_pred HHHHHHHHHhhhhhhcchhhhcCc-cccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999999985 455 999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCceeeeeeecCChhHHHHHHHHHHHhh-hhcccCcc
Q 029473 81 KIFTLPGILFVMFIILLVLTAILSIGLTYIQLSVEDHEWWWRSVFRGGSTAIFMFAYSIYFYF-RSNMSGFL 151 (193)
Q Consensus 81 ~~yy~fgfL~~~~iil~i~~~~vsI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~-~~~~~g~~ 151 (193)
|+||+||||++++++++++|+|+||+.||+|||+||||||||||++|||+|+|+|+||+||++ |++|+|++
T Consensus 450 ~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 450 KFYYLFGFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred cceEEehHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999974
No 4
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=65.00 E-value=3 Score=21.67 Aligned_cols=9 Identities=33% Similarity=1.609 Sum_probs=6.8
Q ss_pred CCCceeeee
Q 029473 115 EDHEWWWRS 123 (193)
Q Consensus 115 Edy~WwWrS 123 (193)
+-.||||.+
T Consensus 5 ~~~nwwwta 13 (18)
T PF08055_consen 5 QIQNWWWTA 13 (18)
T ss_pred cccceeeec
Confidence 456999975
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=58.60 E-value=88 Score=25.82 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCcCC--cchhHHhhhhhhHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh--hc
Q 029473 36 NRYPREILPLPWYQK--SPCQMFIVGLLSFSIIALELHHLYASLWGYKIFTLPGILFVMFIILLVLTAILSIGLTY--IQ 111 (193)
Q Consensus 36 n~ipR~IP~~~~y~~--~~~~~l~~GilPF~~i~vEl~~i~~slW~~~~yy~fgfL~~~~iil~i~~~~vsI~~~Y--~~ 111 (193)
+++-++-|+++--.+ ++..+.+-+.+-+..++.=+.-++. .+..+--..+|++.+.. ..+ .+-+.+...+ .+
T Consensus 60 ~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi~~-~f~~~~~~~~gi~tli~--~~i-~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 60 DELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGIMG-FFSPKNSNQYGIITLIL--VSI-VGGLVFYFIFKYIY 135 (206)
T ss_pred HHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccHHHHHH--HHH-HHHHHHHHHHHHHh
Confidence 334444444443222 4455555665556666554444333 33332111116543322 222 2223333333 33
Q ss_pred c--ccCCCceeeeeeecCC-hhHHHHHHHHHHHhh
Q 029473 112 L--SVEDHEWWWRSVFRGG-STAIFMFAYSIYFYF 143 (193)
Q Consensus 112 L--~~Edy~WwWrSF~~~g-s~~~y~flYsi~y~~ 143 (193)
- +.++.++|||.+..+. ...+++.++.+--++
T Consensus 136 ~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~l 170 (206)
T PF06570_consen 136 PYKKKKKRPSWWKYILISVLAMVLWIVIFVLTSFL 170 (206)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 3456678999886444 344455554444433
No 6
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=51.03 E-value=7 Score=28.81 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCCcCCcchhHHhhhhhhHHHHHHHH
Q 029473 45 LPWYQKSPCQMFIVGLLSFSIIALEL 70 (193)
Q Consensus 45 ~~~y~~~~~~~l~~GilPF~~i~vEl 70 (193)
+.|-.+.....+++|++||++...|-
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHH
Confidence 45656667889999999999999885
No 7
>PRK09546 zntB zinc transporter; Reviewed
Probab=41.50 E-value=25 Score=30.93 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.2
Q ss_pred hhhhHHhhhcchhhhhhhhhccc
Q 029473 3 IVFIYMLFAVPLLALGGRIGYWF 25 (193)
Q Consensus 3 l~~lw~~v~~PL~~lG~~~g~~~ 25 (193)
++.++-.+.+|+|++.|+.|-+.
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf 288 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNL 288 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc
Confidence 45667778889999999999874
No 8
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=25.02 E-value=1.1e+02 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.0
Q ss_pred chhhhHHhhhcchhhhhhhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWF 25 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~ 25 (193)
..+.++-.|-+|+++++|+.|-+.
T Consensus 259 k~LTvvt~IflP~t~IaGiyGMNf 282 (318)
T TIGR00383 259 KILTVVSTIFIPLTFIAGIYGMNF 282 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 457889999999999999999774
No 9
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=25.01 E-value=1.7e+02 Score=24.40 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHHHHHHHHHhhhhHHH
Q 029473 128 GSTAIFMFAYSIYFYFRSNMSGFLQLSFFLGYNVAMCYAFFLILGSVSFR 177 (193)
Q Consensus 128 gs~~~y~flYsi~y~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~GsiGfl 177 (193)
|+.+.+.++|..+=..+++=++|. +++-.=++++.++++...|...++
T Consensus 77 Ga~ac~a~~~fmfpVl~lkPrkFi--LlwTmgslLfvl~Fg~l~Gf~ayl 124 (201)
T COG5102 77 GAGACSAFLYFMFPVLRLKPRKFI--LLWTMGSLLFVLMFGFLLGFRAYL 124 (201)
T ss_pred hhHHHHHHHHHHHHHHhcCcccee--eehhHHHHHHHHHHHHHHhHHHHH
Confidence 445566677766655566777874 778777999999999999999886
No 10
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.49 E-value=1.7e+02 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.0
Q ss_pred chhhhHHhhhcchhhhhhhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWF 25 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~ 25 (193)
..+.++-.|-+|+|++.|+.|-+.
T Consensus 257 k~lTv~s~if~pptliagiyGMNf 280 (316)
T PRK11085 257 KIFSVVSVVFLPPTLVASSYGMNF 280 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 467889999999999999999774
Done!