Query 029473
Match_columns 193
No_of_seqs 106 out of 497
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 33.6 43 0.0015 28.3 4.4 24 2-25 280-303 (339)
2 1j3e_A SEQA protein; protein-D 27.9 14 0.00047 27.6 0.2 13 37-49 69-81 (115)
3 3sk7_A Protein SEQA; sequestra 27.6 14 0.00048 27.6 0.2 12 37-48 70-81 (116)
4 3cx5_C Cytochrome B-C1 complex 27.0 1.5E+02 0.005 26.2 6.8 64 115-178 72-143 (385)
5 2qjy_A Cytochrome B; cytochrom 22.7 1.3E+02 0.0046 27.0 5.7 44 115-158 87-138 (445)
6 1lrr_A SEQA protein; protein-D 22.5 20 0.00068 27.3 0.2 13 37-49 85-97 (131)
7 2iub_A CORA, divalent cation t 20.4 34 0.0012 29.3 1.3 24 2-25 304-327 (363)
8 2pv9_C Proteinase-activated re 19.3 45 0.0016 18.3 1.2 15 37-51 6-20 (26)
9 1lgh_A LH II, B800/850, light 16.2 83 0.0029 20.4 2.1 28 93-120 19-46 (56)
10 3fmt_A Protein SEQA; protein-D 15.9 29 0.001 27.3 -0.2 12 37-48 116-127 (162)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.57 E-value=43 Score=28.28 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.0
Q ss_pred chhhhHHhhhcchhhhhhhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWF 25 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~ 25 (193)
..+.++-.|-+|+|++.|++|-+.
T Consensus 280 k~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccCcC
Confidence 457888999999999999999874
No 2
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=27.86 E-value=14 Score=27.58 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCcC
Q 029473 37 RYPREILPLPWYQ 49 (193)
Q Consensus 37 ~ipR~IP~~~~y~ 49 (193)
.-|||||..|++-
T Consensus 69 tkPK~Ip~TpfWV 81 (115)
T 1j3e_A 69 TKPKHVPGTPYWV 81 (115)
T ss_dssp CCCEECTTSSCEE
T ss_pred CCCCcCCCCCeee
Confidence 4699999999753
No 3
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=27.60 E-value=14 Score=27.59 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029473 37 RYPREILPLPWY 48 (193)
Q Consensus 37 ~ipR~IP~~~~y 48 (193)
.-|||||..|+.
T Consensus 70 tkPK~Ip~TpfW 81 (116)
T 3sk7_A 70 TKPKAIPNTPFW 81 (116)
T ss_dssp SCCEECTTSSCE
T ss_pred CCCCcCCCCCee
Confidence 469999999964
No 4
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=27.01 E-value=1.5e+02 Score=26.21 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCCceeeeeeecCChhHHHHHHH-----HHHHhh-h--hcccCcchhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 029473 115 EDHEWWWRSVFRGGSTAIFMFAY-----SIYFYF-R--SNMSGFLQLSFFLGYNVAMCYAFFLILGSVSFRA 178 (193)
Q Consensus 115 Edy~WwWrSF~~~gs~~~y~flY-----si~y~~-~--~~~~g~~~~~lyf~ys~l~s~~~~l~~GsiGfla 178 (193)
-||+|-.|+.-.-|++.+++.+| .+||-- | .+....+..++++.-+...=...-|=-|-.||-+
T Consensus 72 V~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wg 143 (385)
T 3cx5_C 72 VHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWG 143 (385)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHH
Confidence 37999999999999999888887 355544 4 3334444444444333333333333334444333
No 5
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=22.68 E-value=1.3e+02 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.405 Sum_probs=29.5
Q ss_pred CCCceeeeeeecCChhHHHHHHH-----HHHHhh-h--hcccCcchhhHHHH
Q 029473 115 EDHEWWWRSVFRGGSTAIFMFAY-----SIYFYF-R--SNMSGFLQLSFFLG 158 (193)
Q Consensus 115 Edy~WwWrSF~~~gs~~~y~flY-----si~y~~-~--~~~~g~~~~~lyf~ 158 (193)
-||+|-.|+.-.-|++.+++.+| .+||-- | .+....+..++++.
T Consensus 87 V~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~l~ll 138 (445)
T 2qjy_A 87 VNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLIYLA 138 (445)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHHHHHH
Confidence 37999999999999998888887 355543 4 33344444444443
No 6
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=22.51 E-value=20 Score=27.30 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCcC
Q 029473 37 RYPREILPLPWYQ 49 (193)
Q Consensus 37 ~ipR~IP~~~~y~ 49 (193)
.-|||||..|++-
T Consensus 85 tkPK~Ip~TpfWV 97 (131)
T 1lrr_A 85 TKPKHVPGTPYWV 97 (131)
T ss_dssp CCCEECTTSSCEE
T ss_pred CCCCcCCCCCeEE
Confidence 4699999999753
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.38 E-value=34 Score=29.27 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.2
Q ss_pred chhhhHHhhhcchhhhhhhhhccc
Q 029473 2 VIVFIYMLFAVPLLALGGRIGYWF 25 (193)
Q Consensus 2 ~l~~lw~~v~~PL~~lG~~~g~~~ 25 (193)
..+.+|-.|-+|+|++.|++|-+.
T Consensus 304 k~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 304 KVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Confidence 467889999999999999999774
No 8
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=19.28 E-value=45 Score=18.30 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCcCCc
Q 029473 37 RYPREILPLPWYQKS 51 (193)
Q Consensus 37 ~ipR~IP~~~~y~~~ 51 (193)
..||.+|-|||=+++
T Consensus 6 ~~P~~~Pg~~~an~s 20 (26)
T 2pv9_C 6 PNPRGYPGKFCANDS 20 (26)
T ss_dssp CEECSCTTTTCSCCC
T ss_pred CCCccCCCCccCCCc
Confidence 358999999986653
No 9
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=16.22 E-value=83 Score=20.37 Aligned_cols=28 Identities=11% Similarity=0.432 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCcee
Q 029473 93 FIILLVLTAILSIGLTYIQLSVEDHEWW 120 (193)
Q Consensus 93 ~iil~i~~~~vsI~~~Y~~L~~Edy~Ww 120 (193)
...+....+.++++.=+..|+.|.+||.
T Consensus 19 L~~l~~~v~vlAllIH~~lLs~~~fnWl 46 (56)
T 1lgh_A 19 LPVIWIVATVVAIAVHAAVLAAPGFNWI 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 3344444555666777788899999984
No 10
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=15.93 E-value=29 Score=27.26 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029473 37 RYPREILPLPWY 48 (193)
Q Consensus 37 ~ipR~IP~~~~y 48 (193)
.-|||||..|+.
T Consensus 116 tkPK~Ip~TpfW 127 (162)
T 3fmt_A 116 TKPKHVPGTPYW 127 (162)
T ss_dssp CCEEECTTSSCE
T ss_pred CCCCcCCCCCee
Confidence 469999999964
Done!