BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029474
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAA 135
+PLH+AA+ G++E+VK LL+ D+ A+D +GR PLH+AA G ++V+ L A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA-GADV 61
Query: 136 YATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
A T LHL ++ LE +K L+ D +NAKD G + LHLA + +EV
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV 116
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ K +L + + D +PLH+AA+ G++E+VK LL+ D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
A+D +GR PLH+AA G ++V+ L A A T LHL ++ LE +K L
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 162 V 162
+
Sbjct: 121 L 121
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
+++ TPLH+AA GHL+ K +L + + D +PLH+AA+ G++E+VK LL+
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA 90
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPF 133
D+ A+D +GR PLH+AA G ++V+ L A +
Sbjct: 91 GADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
+GR PLH+AA G ++V+ L A A T LHL ++ LE +K L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
D +NAKD G + LHLA + +EV
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEV 83
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 35 VTNRHHETPLHVAALRGHLDFAKEILR-RTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
V+N ETPLH+AA GH + AK +L+ + V A D + +PLH AA+ G+ +VK L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLL 99
Query: 94 LQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHN 153
L+ N + LA G PLH+AA +G ++ ++ L A T T LH+ K+
Sbjct: 100 LENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYG 157
Query: 154 QLEALKFLVSIMNDRD-FLNAKDDYGMSILHLAVADKQIEV 193
++ + L+ +RD NA G++ LH+AV +++
Sbjct: 158 KVRVAELLL----ERDAHPNAAGKNGLTPLHVAVHHNNLDI 194
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 41 ETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
+TPLH AA GH + K +L P LA + +PLH+AA++G+VE V LL+
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 99 DM-CLARDVDGRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQL 155
C+ + G PLH+AA G+++V L A P AA + T LH+ V HN L
Sbjct: 138 SQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL---TPLHVAVHHNNL 192
Query: 156 EALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+ +K L+ ++ G + LH+A Q+EV
Sbjct: 193 DIVKLLLPRGGSP---HSPAWNGYTPLHIAAKQNQVEV 227
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA + ++ A+ +L+ E + +PLH+AAQ+G+ E+V LL +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
L G PLH+ A +G + V D+ ATT T LH+ + ++ +KFL
Sbjct: 273 LGNK-SGLTPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 162 VSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+ D +NAK G S LH A ++
Sbjct: 331 LQHQAD---VNAKTKLGYSPLHQAAQQGHTDI 359
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 42 TPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD 99
TPLHVAA G + A+ +L R P AG+ +PLH+A ++IVK LL
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGK---NGLTPLHVAVHHNNLDIVKLLLPRG-G 203
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK 159
+ +G PLH+AA + +++V L + +A A ++ T LHL + E +
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 160 FLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
L+S + + N G++ LHL + + V
Sbjct: 263 LLLSKQANGNLGNKS---GLTPLHLVAQEGHVPV 293
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
N+ TPLH+ A GH+ A ++L + V+ +PLH+A+ G +++VK LLQ
Sbjct: 275 NKSGLTPLHLVAQEGHVPVA-DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
D+ A+ G +PLH AA +G ++ L +
Sbjct: 334 QADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRS---SPLHMAAQKGYVEIVKE 92
T R TPLHVA+ G++ K +L+ +++++ SPLH AAQ+G+ +IV
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 93 LLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQV 123
LL+ +P+ DG PL +A G I V
Sbjct: 363 LLKNGASPNEV---SSDGTTPLAIAKRLGYISV 392
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 111 PLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF 170
PLH+A+ G + ++ +L + R + + + ET LH+ + E K+L + ++
Sbjct: 17 PLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYL---LQNKAK 72
Query: 171 LNAKDDYGMSILHLA 185
+NAK + LH A
Sbjct: 73 VNAKAKDDQTPLHCA 87
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ K +L + + D +PLH+AA+ G++E+VK LL+ D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPF 133
A+D +GR PLH+AA G ++V+ L A +
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
+GR PLH+AA G ++V+ L A A T LHL ++ LE +K L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
D +NAKD G + LHLA + +EV
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEV 83
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
+++ TPLH+AA GHL+ K +L + + D +PLH+AA+ G++E+VK LL+
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 42 TPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
TPLH AA GH + K ++ + V A + D R +PLH AA++G+ EIVK L+ D+
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR--TPLHYAAKEGHKEIVKLLISKGADV 96
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
A+D DGR PLH AA +G ++ V L ++ + T L L +H E +K
Sbjct: 97 N-AKDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 161 L 161
L
Sbjct: 155 L 155
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 47 AALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD 105
AA G+ D K+++ V A + D R +PLH AA++G+ EIVK L+ D+ A+D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR--TPLHYAAKEGHKEIVKLLISKGADVN-AKD 67
Query: 106 VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM 165
DGR PLH AA +G ++ V L ++ A T LH K E +K L+S
Sbjct: 68 SDGRTPLHYAAKEGHKEI-VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 166 NDRDFLNAKDDYGMSILHLA 185
D +N D G + L LA
Sbjct: 127 AD---VNTSDSDGRTPLDLA 143
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + VK+L++ D+ A D DGR PLH AA +G ++ V L ++ A
Sbjct: 11 AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNAKDS 68
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LH K E +K L+S D +NAKD G + LH A + E+
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEI 118
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA++G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
A+D DG PLH+AA +G ++++ L +A
Sbjct: 108 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D +PLH+AA++G++EIV+ LL+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A T LHL + LE ++ L+ D +NA+D +G + +++
Sbjct: 103 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A+D DG PLH+AA +G ++++ L +A A
Sbjct: 21 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDK 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL + LE ++ L+ D +NAKD G + LHLA + +E+
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEI 128
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA++G++EIV+ LL+ D+
Sbjct: 82 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 102 LARDVDGRNPLHMAAMKG 119
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNG 157
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA++G++EIV+ LL+ D+
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
A+D DG PLH+AA +G ++++ L +A
Sbjct: 96 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D +PLH+AA++G++EIV+ LL+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A T LHL + LE ++ L+ D +NA+D +G + LA+
Sbjct: 91 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA++G++EIV+ LL+ D+
Sbjct: 70 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 102 LARDVDGRNPLHMAAMKG 119
A+D G+ P +A G
Sbjct: 129 -AQDKFGKTPFDLAIDNG 145
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A+D DG PLH+AA +G ++++ L +A A
Sbjct: 9 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDK 66
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL + LE ++ L+ D +NAKD G + LHLA + +E+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEI 116
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA++G++EIV+ LL+ D+
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
A+D DG PLH+AA +G ++++ L +A
Sbjct: 96 -AKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D +PLH+AA++G++EIV+ LL+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A T LHL + LE ++ L+ D +NA+D +G + LA+
Sbjct: 91 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA++G++EIV+ LL+ D+
Sbjct: 70 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 102 LARDVDGRNPLHMAAMKG 119
A+D G+ P +A +G
Sbjct: 129 -AQDKFGKTPFDLAIREG 145
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A+D DG PLH+AA +G ++++ L +A A
Sbjct: 9 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDK 66
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL + LE ++ L+ D +NAKD G + LHLA + +E+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEI 116
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 41 ETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
+TPLH+AA GH + K +L + DS +PLH+AA+ G+ E+VK LL D
Sbjct: 38 KTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
A+D DG+ PLH+AA G +V V L ++ + T L L +H E +K
Sbjct: 97 N-AKDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 161 L 161
L
Sbjct: 155 L 155
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 47 AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
AA G+ D K++L + DS +PLH+AA+ G+ E+VK LL D A+D
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDS 68
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
DG+ PLH+AA G +V V L ++ A +T LHL ++ E +K L+S
Sbjct: 69 DGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 167 DRDFLNAKDDYGMSILHLA 185
D N D G + L LA
Sbjct: 128 DP---NTSDSDGRTPLDLA 143
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + VK+LL+ D+ A D DG+ PLH+AA G +V V L ++ A
Sbjct: 11 AAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDS 68
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+T LHL ++ E +K L+S D NAKD G + LHLA + EV
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEV 118
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
+ + +TPLH+AA GHL+ E+L + LD S+PLH+AA++G++EIV+ LL+
Sbjct: 44 DTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQVL 124
D+ A D G PLH+AA G ++++
Sbjct: 103 GADVN-ADDTIGSTPLHLAADTGHLEIV 129
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D+ +PLH+AA+ G++EIV+ LL+ D+ A D G PLH+AA +G ++++ L +
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
TI S T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 103 GADVNADDTIGS-TPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA RGHL+ + +L+ + + D+ S+PLH+AA G++EIV+ LL+ D+
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G PLH+AA G +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEI-VEVLLKNGADVNALDF 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL K LE ++ L+ D +NA D G + LHLA +E+
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEI 128
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH AA GH + K +L + DS +PLH AA+ G+ EIVK LL D
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFL 161
A+D DGR PLH AA G ++ V L ++ + T L L +H E +K L
Sbjct: 98 -AKDSDGRTPLHYAAENGHKEI-VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 47 AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
AA G+ D K++L DS +PLH AA+ G+ EIVK LL D A+D
Sbjct: 11 AAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDS 68
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
DGR PLH AA G ++ V L ++ A T LH ++ E +K L+S
Sbjct: 69 DGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 167 DRDFLNAKDDYGMSILHLA 185
D N D G + L LA
Sbjct: 128 DP---NTSDSDGRTPLDLA 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 42 TPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
TPLH AA GH + K ++ + V A + D R +PLH AA+ G+ E+VK L+ D+
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAAENGHKEVVKLLISKGADV 96
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKF 160
A+D DGR PLH AA G +V V L ++ + T L L +H E +K
Sbjct: 97 N-AKDSDGRTPLHHAAENGHKEV-VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 161 L 161
L
Sbjct: 155 L 155
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 47 AALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARD 105
AA G+ D K+++ V A + D R +PLH AA+ G+ E+VK L+ D+ A+D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR--TPLHHAAENGHKEVVKLLISKGADVN-AKD 67
Query: 106 VDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM 165
DGR PLH AA G +V V L ++ A T LH ++ E +K L+S
Sbjct: 68 SDGRTPLHHAAENGHKEV-VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 166 NDRDFLNAKDDYGMSILHLA 185
D +N D G + L LA
Sbjct: 127 AD---VNTSDSDGRTPLDLA 143
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D+ S+PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A+D +G PLH+AA +G ++++ L +
Sbjct: 108 -AKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL-VDLFRARPFAAYATT 139
AA+ G + V+ L+ D+ A DV G PLH+AA G ++++ V L AY T
Sbjct: 21 AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 140 IWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL LE ++ L+ D +NAKDD G++ LHLA +E+
Sbjct: 80 --GSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEI 128
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA +G++EIV+ LL+ D+
Sbjct: 82 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISINNGN 158
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D+ ++PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A+D +G PLH+AA G ++++ L +
Sbjct: 108 -AKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
+ + TPLH+AA GHL+ + +L+ + + D +PLH+AA G++EIV+ LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 97 NPDMCLARDVDGRNPLHMAAMKGR 120
D+ A+D G+ ++ G
Sbjct: 136 GADVN-AQDKFGKTAFDISIDNGN 158
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G PLH+AA G +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEI-VEVLLKYGADVNAWDN 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+ T LHL + LE ++ L+ D +NAKD G + LHLA D +E+
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEI 128
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
+ + TPLH+AA GHL+ E+L R +D+ ++PLH+AA G++EIV+ LL+
Sbjct: 32 DHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
D+ A+D G PL++AA G ++++ L +
Sbjct: 91 GADVN-AKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
A R D IL A D +PLHMAA G++EIV+ LL+ D+ A D +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTN 67
Query: 108 GRNPLHMAAMKGRIQVLVDLFR--ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIM 165
G PLH+AA G ++++ L + A A AT I T L+L LE ++ L+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI---TPLYLAAYWGHLEIVEVLLKHG 124
Query: 166 NDRDFLNAKDDYGMSILHLAV 186
D +NA+D +G + +++
Sbjct: 125 AD---VNAQDKFGKTAFDISI 142
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D+ +PLH+AA G++EIV+ LL+ D+ A D+ G PLH+AA+ G +++ V++
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A W +T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + +D S+PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A D G PLH+AA+ G ++++ L +
Sbjct: 108 -AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AAL GHL+ E+L + +D+ +PLH+AA G++EIV+ LL+ D+
Sbjct: 82 TPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D + S+PLH+AA G+ EIV+ LL+ D+ ARD DG PLH+AA G +++ V++
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A + T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GH + E+L + D+ +PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A+D G PLH+AA +G ++++ L +
Sbjct: 108 -AQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D+ +PLH+AA +G++EIV+ LL+ D+
Sbjct: 82 TPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + DS +PLH+AA++G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVL 124
A D G PLH+AA +G ++++
Sbjct: 108 -ASDSHGFTPLHLAAKRGHLEIV 129
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA RGHL+ E+L + DS +PLH+AA++G++EIV+ LL+ D+
Sbjct: 82 TPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ ARD G PLH+AA G +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEI-VEVLLKNGADVNAKDS 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL + LE ++ L+ D +NA D +G + LHLA +E+
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEI 128
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRR 62
++ H TPLH+AA RGHL+ + +L+
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKN 135
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D+ +PLH+AA G++EIV+ LL+ D+ A D+ G PLH+AA+ G +++ V++
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A W +T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + +D S+PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A D G PLH+AA+ G ++++ L +
Sbjct: 108 -AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AAL GHL+ E+L + +D+ +PLH+AA G++EIV+ LL+ D+
Sbjct: 82 TPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G PLH+AA G +++ V++ A I
Sbjct: 21 AARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEI-VEVLLKHGADVNAIDI 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL LE ++ L+ D +NA D +G + LHLA +E+
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEI 128
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+ TPLH+AA GHL+ E+L + D +PLH+AA G++EIV+ LL+
Sbjct: 43 TDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
D+ A D DG PLH+AA G ++++ L +
Sbjct: 102 HGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR- 129
D+ +PLH+AA G++EIV+ LL+ D+ A D+ G PLH+AA G ++++ L +
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
AY T LHL K+ LE ++ L+ D +NA+D +G + +++
Sbjct: 103 GADVNAYDND--GHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 137 ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
AT T LHL + LE ++ L+ D +NA D G++ LHLA A +E+
Sbjct: 42 ATDNDGYTPLHLAASNGHLEIVEVLLKNGAD---VNASDLTGITPLHLAAATGHLEI 95
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + +D +PL +AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A D++G PLH+AAM G ++++ L +
Sbjct: 108 -ANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D+ +PLH+AA G++EIV+ LL+ D+ A D G PL +AA+ G +++ V++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A + T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPL +AAL GHL+ E+L + D +PLH+AA G++EIV+ LL+ D+
Sbjct: 82 TPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ + +L+ + + DS +PLH+AA +G++E+V+ LL+ D+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVL 124
A D +G PLH+AA G ++++
Sbjct: 108 -ANDHNGFTPLHLAANIGHLEIV 129
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA RGHL+ E+L + D +PLH+AA G++EIV+ LL+ D+
Sbjct: 82 TPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G PLH+AA G +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEI-VEVLLKNGADVNADDS 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL LE ++ L+ D +NA D G + LHLA +E+
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGHLEI 128
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D +PLH+AA KG++EIV+ LL+ D+ A D G PLH+AA+ G +++ V++
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
AT + T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
++ +TPLH+AAL GHL+ E+L + D+ +PLH+AA G++EIV+ LL+
Sbjct: 76 ADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGR 120
D+ A+D G+ ++ G
Sbjct: 135 YGADVN-AQDKFGKTAFDISIDNGN 158
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G+ PLH+AA+KG +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEI-VEVLLKHGADVNAADK 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+T LHL + LE ++ L+ D +NA D YG + LHLA +E+
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEI 128
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+ + TPLH+AA G L+ E+L + DS +PLH+AA G++EIV+ LL+
Sbjct: 35 TDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
D+ A D G PLH+AA+ G+++++ L +
Sbjct: 94 HGADVN-AYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR- 129
D +PLH+AA G +EIV+ LL+ D+ A D G PLH+AA G ++++ L +
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADK 189
AY W T LHL QLE ++ L+ D +NA+D G++ +++
Sbjct: 95 GADVNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQG 149
Query: 190 Q 190
Q
Sbjct: 150 Q 150
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + D +PLH+AA G +EIV+ LL+ D+
Sbjct: 74 TPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G ++ +G+
Sbjct: 133 -AQDALGLTAFDISINQGQ 150
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA G + V+ L+ D+ A D +G PLH+AA G++++ V++ A+
Sbjct: 13 AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEI-VEVLLKNGADVNASDS 70
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL LE ++ L+ D +NA D G + LHLA Q+E+
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEI 120
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
+D+ +PLH+AA G++EIV+ LL+ D+ A DV G PLH+AAM G +++ V++
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEI-VEVLL 100
Query: 130 ARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A + T LHL LE ++ L+ D +NA+D +G + +++
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA+ GHL+ E+L + D S+PLH+AA +G++EIV+ LL+ D+
Sbjct: 82 TPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+ GHL+ E+L + D +PLH+AA +G++EIV+ LL+ D+
Sbjct: 49 TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFR 129
A D G PLH+AA G ++++ L +
Sbjct: 108 -AMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
+++ TPLH+AA RGHL+ E+L + +D + +PLH+AA+ G++EIV+ LL+
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGR 120
D+ A+D G+ ++ G
Sbjct: 135 YGADVN-AQDKFGKTAFDISIDNGN 158
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 38/118 (32%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAA 135
+PLH+ G++EI++ LL+ D+ A D G PLH+AA +G ++++ L +
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLK------ 101
Query: 136 YATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
Y + NA D G + LHLA D +E+
Sbjct: 102 YGADV-------------------------------NAMDYQGYTPLHLAAEDGHLEI 128
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRR---SSPLHMAAQKGYVEIVKELLQVNP 98
TPLH AA GH + K++L + ++++R ++PLH+AA+ G+ EIVK LL
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 99 DMCLARDVDGRNPLHMAAMKGRIQVLVDLFRAR 131
D+ AR DG P H+A G ++ V L A+
Sbjct: 67 DVN-ARSKDGNTPEHLAKKNGHHEI-VKLLDAK 97
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN 166
DG PLH AA G + + L ++ A + T LHL K+ E +K L++
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 167 DRDFLNAKDDYGMSILHLAVADKQIEV 193
D +NA+ G + HLA + E+
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEI 90
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D+ ++PLH+AA G++EIV+ LL+ D+ A DV G PLH+AA G +++ V++
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEI-VEVLLK 101
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
A T LHL K LE ++ L+ D +NA+D +G + +++
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ E+L + +DS +PLH+AA+ GY+EIV+ LL+ D+
Sbjct: 82 TPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 141 -AQDKFGKTAFDISIDNGN 158
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G PLH+AA G +++ V++ A+ +
Sbjct: 21 AARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEI-VEVLLKHGADVDASDV 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+ T LHL LE ++ L+ D +NA D GM+ LHLA +E+
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEI 128
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
VT++ +PLHVAAL G D +L+ AG ++ ++ PLH+A Q+G+ ++VK LL
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 95 QVN--PDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
N P+ +D+ G PL A G + LV L + A+ T LH V
Sbjct: 140 DSNAKPNK---KDLSGNTPLIYACSGGHHE-LVALLLQHGASINASNNKGNTALHEAVIE 195
Query: 153 NQLEALKFL------VSIMNDR 168
+ ++ L V ++N R
Sbjct: 196 KHVFVVELLLLHGASVQVLNKR 217
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 75 SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA 134
SSPLH+AA G +++ LL+ + AR+ D PLH+A +G QV+ L +
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 135 AYATTIWSETVLHLCVK-HNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
+ +++ C H++L AL ++ +NA ++ G + LH AV +K + V
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVAL-----LLQHGASINASNNKGNTALHEAVIEKHVFV 200
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D R+S+PLH+AA V IV+ LLQ D+ A+D G PLH A G +V +L
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEV-TELLLK 112
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
A +W T LH N++E L+S D +N +G S + +A
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMA 164
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
N+ TPLHVAA R H D E+L + LDS + LH AA G+++ + LL
Sbjct: 244 NKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Query: 97 NPD 99
D
Sbjct: 303 GSD 305
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 40 HETPLH--VAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
HET LH VA+L E+L R E + +PLH+AA++ + +++ E+L +
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM-EVLHKH 269
Query: 98 PDMCLARDVDGRNPLHMAAMKGRIQV 123
A D G+ LH AA+ G +Q
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQT 295
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
+D +PLH+AA++G++EIV+ LL+ D+ ARD+ GR PLH+AA G ++++
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIV 96
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA RGHL+ E+L + D +PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 102 LARDVDGRNPLHMAAMKG 119
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNG 124
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 93 LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
+L N A D G PLH+AA +G +++ V++ A IW T LHL
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
LE ++ L+ D +NA+D +G + +++
Sbjct: 91 GHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL K LE ++ L+ D +NA+D +G + LHLA +E+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGHLEI 95
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
+D +PLH+AA++G++EIV+ LL+ D+ A D+ GR PLH+AA G ++++
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIV 96
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 42 TPLHVAALRGHLDFAKEILRR-TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
TPLH+AA RGHL+ + +L+ V A ++ R +PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR--TPLHLAATVGHLEIVEVLLEYGADV 106
Query: 101 CLARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 107 N-AQDKFGKTAFDISIDNGN 125
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 93 LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
+L N A D G PLH+AA +G +++ V++ A+ IW T LHL
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
LE ++ L+ D +NA+D +G + +++
Sbjct: 91 GHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL K LE ++ L+ D +NA D +G + LHLA +E+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD---VNASDIWGRTPLHLAATVGHLEI 95
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA RGHL+ E+L + DS +PLH+AA G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
+D +PLH+AA++G++EIV+ LL+ D+ A D GR PLH+AA G ++++
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHLAATVGHLEIV 96
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 93 LLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKH 152
+L N A D G PLH+AA +G +++ V++ A+ W T LHL
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEI-VEVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
LE ++ L+ D +NA+D +G + +++
Sbjct: 91 GHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL K LE ++ L+ D +NA D +G + LHLA +E+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLAATVGHLEI 95
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 73 RRSSPLHMAAQKGYVEIVKELLQ--VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
+ SPLH AA+ G+V+I L+Q N D C D R PL AA ++ + L +A
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 131 RPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQ 190
S T LHL K E +++L+S N + +N +DD G + + A K
Sbjct: 67 GALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLS--NGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 191 IEV 193
+++
Sbjct: 124 VDL 126
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 27/163 (16%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ----VN 97
+PLH AA GH+D +++ + + +R +PL AA+ ++E VK L++ V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 98 PDMCLARDVDGRNPLHMAAMKGRIQVLVDLF-------RARPFAAYATTIWSETVLHLCV 150
P +D +G LH+AA KG +V+ L + + IW+ H
Sbjct: 72 P-----KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH--- 123
Query: 151 KHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
++ +K L+S +D +N +D+ LH A +++
Sbjct: 124 ----VDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCVDI 159
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPL AA HL+ K +++ L D+ S+ LH+AA+KG+ E+V+ LL
Sbjct: 46 TPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 102 LARDVDGRNP---------------------------------LHMAAMKGRIQVLVDLF 128
+D G P LH AA G + + ++
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI-AEIL 163
Query: 129 RARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD 188
A +A I ++ LH+ + N+ + + +S +D + K+ G + L A +
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLN 220
Query: 189 KQI 191
Q+
Sbjct: 221 SQV 223
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 44 LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLA 103
LH AA G +D A EIL ++ SPLH+AA++ + V L + D+ L
Sbjct: 148 LHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL- 205
Query: 104 RDVDGRNPLHMAAMKGRIQVLVDLFRA 130
++ +G PL A++ ++ + + +A
Sbjct: 206 KNKEGETPLQCASLNSQVWSALQMSKA 232
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 70 LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
LD +PLH+AAQ G++EIV+ LL+ D+ A D G PLH+AA++G ++++
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIV 96
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA GHL+ + +L+ + E D+ +PLH+AA +G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 144 TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
T LHL + LE ++ L+ D +NA+D++G++ LHLA +E+
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEI 95
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T++ T LH A GH + E L + V + D SPLH+AA G EIVK LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL- 93
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR--ARP--------------------- 132
V A + +G PLH AA K R ++ V L A P
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 133 ------FAAYATTIW---SETVLHLCVKHNQLEALKFLVS 163
F +T I T LHL ++E KFLV+
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
Query: 48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
A G LD KE + LA D + LH A G+ EIV+ LLQ+ + +D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
G +PLH+AA G +++ L + A T LH N+ E L+ +
Sbjct: 73 GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
D AKD Y + +H A A +++
Sbjct: 132 PD---AKDHYDATAMHRAAAKGNLKM 154
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 47 AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
AA G ++ K++ V +++ R+S+PLH AA V +V+ LLQ D+ A+D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 73
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
G PLH A G +V +L +W T LH + E K L+
Sbjct: 74 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL 102
PLH A GH + A E+L + + D + +PLH AA KG EI K LLQ D
Sbjct: 78 PLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-T 135
Query: 103 ARDVDGRNPLHM 114
++ DG PL +
Sbjct: 136 KKNRDGNTPLDL 147
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 47 AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
AA G ++ K++ V +++ R+S+PLH AA V +V+ LLQ D+ A+D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 75
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
G PLH A G +V +L +W T LH + E K L+
Sbjct: 76 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL 102
PLH A GH + A E+L + + D + +PLH AA KG EI K LLQ D
Sbjct: 80 PLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-T 137
Query: 103 ARDVDGRNPLHM 114
++ DG PL +
Sbjct: 138 KKNRDGNTPLDL 149
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 68 GELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRN--PLHMAAMKGRIQVLV 125
G +S L AA+ G VE VK+L V C RD++GR PLH AA R+ V V
Sbjct: 4 GSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSV-V 60
Query: 126 DLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
+ +A LH + E + LV +N D + + LH A
Sbjct: 61 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEA 117
Query: 186 VADKQIEV 193
A + E+
Sbjct: 118 AAKGKYEI 125
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
A G LD KE + LA D + LH A G+ EIV+ LLQ+ + +D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
G +PLH+AA GR +++ L + A T LH N+ E L+ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
D AKD Y + +H A A +++
Sbjct: 132 PD---AKDHYDATAMHRAAAKGNLKM 154
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPD 99
+PLH+AA G + K +L + + ++ +PLH AA K EI LL+ NPD
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIW---SETVLHLCVKHNQLE 156
A+D +H AA KG ++++ L F +T I T LHL ++E
Sbjct: 134 ---AKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 157 ALKFLVS 163
KFLV+
Sbjct: 187 EAKFLVT 193
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
N++ TPLH AA + + A +L + D ++ +H AA KG +++V LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQ 122
+ +D +G PLH+A + R++
Sbjct: 162 KASTNI-QDTEGNTPLHLACDEERVE 186
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 47 AALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDV 106
AA G ++ K++ V +++ R+S+PLH AA V +V+ LLQ D+ A+D
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK 77
Query: 107 DGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
G PLH A G +V +L +W T LH + E K L+
Sbjct: 78 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCL 102
PLH A GH + A E+L + + D + +PLH AA KG EI K LLQ D
Sbjct: 82 PLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-T 139
Query: 103 ARDVDGRNPLHM 114
++ DG PL +
Sbjct: 140 KKNRDGNTPLDL 151
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
A G L+ KE + LA D + LH A G+ EIV+ LLQ+ + +D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 72
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
G +PLH+AA GR +++ L + A T LH N+ E L+ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
D AKD Y + +H A A +++
Sbjct: 132 PD---AKDHYEATAMHRAAAKGNLKM 154
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPD 99
+PLH+AA G + K +L + + ++ +PLH AA K EI LL+ NPD
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK 159
A+D +H AA KG ++++ L + T T LHL ++E K
Sbjct: 134 ---AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAK 189
Query: 160 FLVS 163
LVS
Sbjct: 190 LLVS 193
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
N++ TPLH AA + + A +L + D ++ +H AA KG ++++ LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQ 122
+ +D +G PLH+A + R++
Sbjct: 162 KASTNI-QDTEGNTPLHLACDEERVE 186
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48 ALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVD 107
A G L+ KE + LA D + LH A G+ EIV+ LLQ+ + +D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA 73
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
G +PLH+AA GR +++ L + A T LH N+ E L+ +
Sbjct: 74 GWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
D AKD Y + +H A A +++
Sbjct: 133 PD---AKDHYEATAMHRAAAKGNLKM 155
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ--VNPD 99
+PLH+AA G + K +L + + ++ +PLH AA K EI LL+ NPD
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALK 159
A+D +H AA KG ++++ L + T T LHL ++E K
Sbjct: 135 ---AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAK 190
Query: 160 FLVS 163
LVS
Sbjct: 191 LLVS 194
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV 96
N++ TPLH AA + + A +L + D ++ +H AA KG ++++ LL
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 97 NPDMCLARDVDGRNPLHMAAMKGRIQ 122
+ +D +G PLH+A + R++
Sbjct: 163 KASTNI-QDTEGNTPLHLACDEERVE 187
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 75 SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFA 134
+SPLH+AAQ G+ + LL+ VD R PLHMAA +G + V++
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANI-VEVLLKHGAD 92
Query: 135 AYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
A + T LH +HN E ++ L+ D
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
+PLH+AA GH E+L R V +PLHMAA +G+ IV+ LL+ D+
Sbjct: 36 SPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Query: 102 LARDVDGRNPLHMA 115
A+D+ LH A
Sbjct: 95 -AKDMLKMTALHWA 107
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
TPLH+AA GH + + +L+ + + D + + LH A + + E+V+ L++ D+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 108 GRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMND 167
G +PLH+AA G L RA + A T T LH+ ++ L+ D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 168 RDFLNAKDDYGMSILHLAVADKQIEV 193
+NAKD M+ LH A EV
Sbjct: 93 ---VNAKDMLKMTALHWATEHNHQEV 115
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
D + ++PLH+AA ++EIV+ LL+ D+ A D DG PLH+AA+ G ++++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIV 96
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
+R TPLH+AA HL+ E+L + D+ S+PLH+AA G++EIV+ LL
Sbjct: 42 ANDRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 95 QVNPDMCLARDVDGRNPLHMAAMKGR 120
+ D+ A+D G+ ++ G
Sbjct: 101 KHGADVN-AQDKFGKTAFDISIDNGN 125
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 44 LHVAALRGHLDFAKEILRRTPVLAGEL------DSRRSSPLHMAAQKGYVEIVKELLQVN 97
LH+A + E++R+ + G+L ++ + +PLH+A EI + LL
Sbjct: 12 LHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 98 PDMCLARDVDGRNPLHMAAMKG---RIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKH 152
D L RD G PLH+A +G + VL + AT T LHL H
Sbjct: 69 CDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDY-GMSILHLAV 186
L ++ LVS+ D +NA++ G + LHLAV
Sbjct: 128 GYLGIVELLVSLGAD---VNAQEPCNGRTALHLAV 159
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
N +TPLH+A + + A+ +L P L D R ++PLH+A ++G + V L
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLT 98
Query: 95 Q--VNP---DMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLC 149
Q P + A + +G LH+A++ G + ++ L T LHL
Sbjct: 99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158
Query: 150 V 150
V
Sbjct: 159 V 159
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 142 SETVLHLCVKHNQLE-ALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
++ LHL + H + ++ + + D FLN +++ + LHLAV Q E+
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 3 RMESLLYEASVEGNITTXXXXXXXXXXXXXKVVTNRHHETPLHVAALRGHLDFAKEILRR 62
R E+LL+ AS++G+I + K + TPLH A GHL E+L +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVV-ELLLQ 64
Query: 63 TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
L + SPLH AA+ G+V+IVK LL
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
TN ET LH+A+++G + + +L+ P + D +PLH A G++++V+ L
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELL 62
Query: 94 LQVNPDMCLARDVDGRNPLHMAAMKGRIQVL------------VDLFRARP 132
LQ + + +PLH AA G + ++ V++F RP
Sbjct: 63 LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 44 LHVAALRGHLDFAKEILRRTPVLAGEL------DSRRSSPLHMAAQKGYVEIVKELLQVN 97
LH+A + E++R+ + G+L ++ + +PLH+A EI + LL
Sbjct: 9 LHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 65
Query: 98 PDMCLARDVDGRNPLHMAAMKG---RIQVLVDLFRARPFAAY--ATTIWSETVLHLCVKH 152
D L RD G PLH+A +G + VL + AT T LHL H
Sbjct: 66 CDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 124
Query: 153 NQLEALKFLVSIMNDRDFLNAKDDY-GMSILHLAV 186
L ++ LVS+ D +NA++ G + LHLAV
Sbjct: 125 GYLGIVELLVSLGAD---VNAQEPCNGRTALHLAV 156
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
N +TPLH+A + + A+ +L P L D R ++PLH+A ++G + V L
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLT 95
Query: 95 Q--VNP---DMCLARDVDGRNPLHMAAMKGRIQVL 124
Q P + A + +G LH+A++ G + ++
Sbjct: 96 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 130
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 42 TPLHVAALRGHLDFAKEILRR--TPVLAGELDSRR---SSPLHMAAQKGYVEIVKELLQV 96
TPLH+A +G L + + TP L L + + LH+A+ GY+ IV+ L+ +
Sbjct: 77 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 136
Query: 97 NPDMCLARDVDGRNPLHMA 115
D+ +GR LH+A
Sbjct: 137 GADVNAQEPCNGRTALHLA 155
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 142 SETVLHLCVKHNQLEALKFLV--SIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
++ LHL + H + +AL V + D FLN +++ + LHLAV Q E+
Sbjct: 5 GDSFLHLAIIHEE-KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 57
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILRRTPV---LAGELDSRRSSPLHMAAQKGYVEIVKEL 93
++ + T LH AA+ +D K + + + L G+L+S +PLH A ++G++ +V +L
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS---TPLHWATRQGHLSMVVQL 95
Query: 94 LQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLF 128
++ D L D +G + +H+AA G ++ L
Sbjct: 96 MKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLI 129
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 40 HETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
+ TPLH A +GHL ++++ P L +D S +H+AAQ G+ IV L+
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 98 PDMCLARDVDGRNPLHMAAMK 118
D+ + D +G PL AA +
Sbjct: 133 QDVDM-MDQNGMTPLMWAAYR 152
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDM-CLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
D + LH AA +++VK + + L D++ PLH A +G + ++V L +
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN-STPLHWATRQGHLSMVVQLMK 97
Query: 130 ARPFAAYATTIWSE--TVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLA 185
+ A + I E + +HL + + +L++ D D + D GM+ L A
Sbjct: 98 ---YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM---DQNGMTPLMWA 149
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPDM 100
PLH A + +E+L P L + D PLH + EI LL N ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE--TVLHLCVKHNQLEAL 158
D G P H+A G ++V+ L+ RP I ++ T LHL V E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 159 KFLV 162
+FL+
Sbjct: 124 QFLI 127
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 77 PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
PLH A + V+ELL P + L +D DGR PLH + F+A ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------FQAHEITSF 54
Query: 137 --------------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGM 179
+ W T H+ LE +K L DR LN + G+
Sbjct: 55 LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGV 108
Query: 180 SILHLAVADKQIEV 193
+ LHLAV K EV
Sbjct: 109 TCLHLAVGKKWFEV 122
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 42 TPLHVAALRGHLDFAKEILRR--TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD 99
TP H+A G+L+ K + R P L ++ ++ + LH+A K + E+ + L++ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGA 131
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVL 124
+D + PLH AA G ++++
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLI 156
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 39 HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
H +PLH A G + ++ R + ++ +PLH+AA G+ +IV++LLQ
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 99 DMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
D+ A + G PLH A G+ QV DL
Sbjct: 92 DIN-AVNEHGNVPLHYACFWGQDQVAEDL 119
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
V NR +TPLH+AA GH D +++L+ + ++ + PLH A G ++ ++L+
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLV 120
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPDM 100
PLH A + +E+L P L + D PLH + EI LL N ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE--TVLHLCVKHNQLEAL 158
D G P H+A G ++V+ L+ RP I ++ T LHL V E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 159 KFLV 162
+FL+
Sbjct: 124 QFLI 127
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 77 PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
PLH A + V+ELL P + L +D DGR PLH + F+A ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------FQAHEITSF 54
Query: 137 --------------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGM 179
+ W T H+ LE +K L DR LN + G+
Sbjct: 55 LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGV 108
Query: 180 SILHLAVADKQIEV 193
+ LHLAV K EV
Sbjct: 109 TCLHLAVGKKWFEV 122
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 42 TPLHVAALRGHLDFAKEILRR--TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD 99
TP H+A G+L+ K + R P L ++ ++ + LH+A K + E+ + L++ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGA 131
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVL 124
+D + PLH AA G ++++
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLI 156
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 39 HHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
H +PLH A G + ++ R + ++ +PLH+AA G+ +IV++LLQ
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 99 DMCLARDVDGRNPLHMAAMKGRIQVLVDL 127
D+ A + G PLH A G+ QV DL
Sbjct: 97 DIN-AVNEHGNVPLHYACFWGQDQVAEDL 124
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
V NR +TPLH+AA GH D +++L+ + ++ + PLH A G ++ ++L+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLV 125
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQV--NPDM 100
PLH A + +E+L P L + D PLH + EI LL N ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 101 CLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE--TVLHLCVKHNQLEAL 158
D G P H+A G ++V+ L+ RP I ++ T LHL V E
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 159 KFLV 162
+FL+
Sbjct: 124 QFLI 127
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 77 PLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAY 136
PLH A + V+ELL P + L +D DGR PLH + F+A ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS----------FQAHEITSF 54
Query: 137 --------------ATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF---LNAKDDYGM 179
+ W T H+ LE +K L DR LN + G+
Sbjct: 55 LLSKMENVNLDDYPDDSGW--TPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGV 108
Query: 180 SILHLAVADKQIEV 193
+ LHLAV K EV
Sbjct: 109 TCLHLAVGKKWFEV 122
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 42 TPLHVAALRGHLDFAKEILRR--TPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD 99
TP H+A G+L+ K + R P L ++ ++ + LH+A K + E+ + L++ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGA 131
Query: 100 MCLARDVDGRNPLHMAAMKGRIQVL 124
+D + PLH AA G ++++
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLI 156
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA+ HL+ E+L + +D+ +PLH+ A G++EIV+ LL+ D+
Sbjct: 49 TPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A D G PLH+AAM +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-AEDKVGLTPLHLAAMNDHLEI-VEVLLKNGADVNAIDA 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
ET LHL + LE ++ L+ D +NA+D +G + +++
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 ETPLHVAALRGHLDFAKEILR 61
ETPLH+ A+ GHL+ + +L+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLK 101
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 75 SSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR-------IQVLVDL 127
+ LH+AA KGY E++K L+Q D+ + +D DG PLH AA G+ ++ L D+
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 128 FRARPFAAYATTIWSETVL 146
A + E +L
Sbjct: 259 EAVNKVGQTAFDVADEDIL 277
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 31/171 (18%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
T LH A + ++D K ++ + + D+ PLH AA GY++I + L+ +
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 102 LARDVDGRNPLHM----------------------AAMKGRIQVLVDLFRARPFAAYATT 139
A + +G PL + AA K ++++ R + +
Sbjct: 134 -AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 140 I----WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
+ T LH+ E LK L+ D +N KD G + LH A
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAA 240
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 42 TPLHVAALRGHLDFAKEILR-RTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM 100
T LHVAA +G+ + K +++ R V + D +PLH AA G E + L++ DM
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW--TPLHAAAHWGKEEACRILVENLCDM 258
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPLH+AA+ GHL+ + +L+ + ++ R+ PLH+AA ++EIV+ LL+ D+
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT-PLHLAAWADHLEIVEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIDNGN 125
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFR 129
+PLH+AA G++EIV+ LL+ D+ + GR PLH+AA ++++ L +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLK 101
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 125 VDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHL 184
V + A A W T LHL LE ++ L+ D +NA + G + LHL
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VNATGNTGRTPLHL 86
Query: 185 AVADKQIEV 193
A +E+
Sbjct: 87 AAWADHLEI 95
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 57 KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
KEIL+ T E+D+ ++PL++A +EI K L+ D+ L + +P A
Sbjct: 22 KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAG 80
Query: 117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
+GR ++L + + + L + ++ +K L+ + R+ ++ ++D
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE--DGREDIDFQND 138
Query: 177 YGMSILHLAVA 187
+G + L AV
Sbjct: 139 FGYTALIEAVG 149
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ---- 95
H +PLH A L GHL K +L+ + G + + +PL A G + V LLQ
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE-----TVLHLCV 150
V P+ LA +P+H AA +G ++ + L AY I + T L+L
Sbjct: 151 VQPESDLA------SPIHEAARRGHVECVNSLI------AYGGNIDHKISHLGTPLYLAC 198
Query: 151 KHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
++ Q +K L+ D + +D S LH V
Sbjct: 199 ENQQRACVKKLLESGADVNQGKGQD----SPLHAVV 230
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
TPL++A GHL+ E+L + +D+ +PLH+AA G++EI + LL+ D+
Sbjct: 49 TPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 102 LARDVDGRNPLHMAAMKGR 120
A+D G+ ++ G
Sbjct: 108 -AQDKFGKTAFDISIGNGN 125
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQV 123
D +PL++A G++EIV+ LL+ D+ A D G PLH+AA G +++
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEI 95
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTI 140
AA+ G + V+ L+ D+ A+D G PL++A G +++ V++ A
Sbjct: 21 AARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEI-VEVLLKNGADVNAVDA 78
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAVAD 188
T LHL LE + L+ D +NA+D +G + +++ +
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGN 123
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 171 LNAKDDYGMSILHLAVADKQIEV 193
+NAKD+YG++ L+LA A +E+
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEI 62
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 22/146 (15%)
Query: 40 HETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ---- 95
H +PLH A L GHL K +L+ + G + + +PL A G + V LLQ
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSE-----TVLHLCV 150
V P+ LA +P+H AA +G ++ + L AY I + T L+L
Sbjct: 95 VQPESDLA------SPIHEAARRGHVECVNSLI------AYGGNIDHKISHLGTPLYLAC 142
Query: 151 KHNQLEALKFLVSIMNDRDFLNAKDD 176
++ Q +K L+ D + +D
Sbjct: 143 ENQQRACVKKLLESGADVNQGKGQDS 168
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 44 LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDM-CL 102
+H A +G LD KE LR+ L + D R +PL A+ G +E V+ LL+ D L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
A++ + + L +A+ G + V L R T L V+ N ++ ++ L+
Sbjct: 66 AKERE--SALSLASTGGYTDI-VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 163 SIMNDRDFLNAKDDYGMSILHLAVA 187
+ D L + D G + + LAVA
Sbjct: 123 ARGAD---LTTEADSGYTPMDLAVA 144
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
T+ TPL AA G + + +L+ P L G+ R S L +A KGY +IVK L
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK---GRESALSLACSKGYTDIVKML 104
Query: 94 LQVNPDMCLARDVDGRNPL 112
L D+ D +G PL
Sbjct: 105 LDCGVDVN-EYDWNGGTPL 122
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 47 AALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLAR 104
++L G D + I+ P L + + LH A G+ EIVK L+Q ++ A
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAA 99
Query: 105 DVDGRNPLHMAAMKGRIQV 123
D DG PLH AA +QV
Sbjct: 100 DSDGWTPLHCAASCNNVQV 118
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 47 AALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLAR 104
++L G D + I+ P L + + LH A G+ EIVK L+Q ++ A
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAA 99
Query: 105 DVDGRNPLHMAAMKGRIQV 123
D DG PLH AA +QV
Sbjct: 100 DSDGWTPLHCAASCNNVQV 118
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
T+ TPL AA G + + +L+ P L G+ R S L +A KGY +IVK L
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK---GRESALSLACSKGYTDIVKML 86
Query: 94 LQVNPDMCLARDVDGRNPL 112
L D+ D +G PL
Sbjct: 87 LDCGVDVN-EYDWNGGTPL 104
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRT--PVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
T+ TPL AA G + + +L+ P L G+ R S L +A KGY +IVK L
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK---GRESALSLACSKGYTDIVKML 88
Query: 94 LQVNPDMCLARDVDGRNPL 112
L D+ D +G PL
Sbjct: 89 LDCGVDVN-EYDWNGGTPL 106
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 66 LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLV 125
L + D + LH+AA+ + K LL+ + D + +D GR PLH A V
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQ 75
Query: 126 DLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH 183
L R R A T L L + L L ++N +NA DD G S LH
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALH 130
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+R ET LH+AA D AK +L + A D+ +PLH A + + L++
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 96 VNPDMCLARDVDGRNPLHMA---AMKGRIQVLVD 126
AR DG PL +A A++G ++ L++
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 44 LHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPD-MCL 102
+H A +G LD KE LR+ L + D R +PL A+ G +E V+ LL+ D L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 103 ARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLV 162
A++ + + L +A+ G + V L R T L V N ++ ++ L+
Sbjct: 66 AKERE--SALSLASTGGYTDI-VGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 163 SIMNDRDFLNAKDDYGMSILHLAVA 187
+ D L + D G + + LAVA
Sbjct: 123 ARGAD---LTTEADSGYTPMDLAVA 144
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 57 KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
+ + + L + D + LH+AA+ + K LL+ + D + +D GR PLH A
Sbjct: 40 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAV 98
Query: 117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
V L R R A T L L + L L ++N +NA DD
Sbjct: 99 SADAQGVFQILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDD 155
Query: 177 YGMSILH 183
G S LH
Sbjct: 156 LGKSALH 162
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+R ET LH+AA D AK +L + A D+ +PLH A + + L++
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
AR DG PL +AA +L DL +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 57 KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
+ + + L + D + LH+AA+ + K LL+ + D + +D GR PLH A
Sbjct: 41 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAV 99
Query: 117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
V L R R A T L L + L L ++N +NA DD
Sbjct: 100 SADAQGVFQILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDD 156
Query: 177 YGMSILH 183
G S LH
Sbjct: 157 LGKSALH 163
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+R ET LH+AA D AK +L + A D+ +PLH A + + L++
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIR 112
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
AR DG PL +AA +L DL +
Sbjct: 113 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 57 KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
+ + + L + D ++ LH+AA + K LL+ + D + +D GR PLH A
Sbjct: 40 SDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANI-QDNMGRTPLHAAV 98
Query: 117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
V L R R A T L L + L L ++N +NA DD
Sbjct: 99 SADAQGVFQILIRNRATDLDARMHDGTTPLILAAR---LAVEGMLEDLINSHADVNAVDD 155
Query: 177 YGMSILH 183
G S LH
Sbjct: 156 LGKSALH 162
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+R T LH+AA D AK +L + A D+ +PLH A + + L++
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 96 VNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
AR DG PL +AA +L DL +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
+P+H AA G LD K +L LDS S P+H+A ++G+ +V L P+
Sbjct: 76 SPVHDAARTGFLDTLK-VLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESD 131
Query: 102 L-ARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
L RD G PL +A +G Q L+D+ +
Sbjct: 132 LHHRDASGLTPLELARQRG-AQNLMDILQG 160
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
+P+H AA G LD K +L LDS S P+H+A ++G+ +V L P+
Sbjct: 78 SPVHDAARTGFLDTLK-VLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESD 133
Query: 102 L-ARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
L RD G PL +A +G Q L+D+ +
Sbjct: 134 LHHRDASGLTPLELARQRG-AQNLMDILQG 162
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 57 KEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAA 116
+ + + L + D + LH+AA+ + K LL+ + D + +D GR PLH A
Sbjct: 5 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXI-QDNMGRTPLHAAV 63
Query: 117 MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDD 176
V L R R A T L L + L L ++N +NA DD
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAAR---LALEGMLEDLINSHADVNAVDD 120
Query: 177 YGMSILH 183
G S LH
Sbjct: 121 LGKSALH 127
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 36 TNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQ 95
T+R ET LH+AA D AK +L + A D+ +PLH A + + LL+
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLR 76
Query: 96 VNPDMCLARDVDGRNPLHMA---AMKGRIQVLVD 126
AR DG PL +A A++G ++ L++
Sbjct: 77 NRATDLDARMHDGTTPLILAARLALEGMLEDLIN 110
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGR 120
D S+PLH+AA+ G++E+VK LL+ D+ A+D G+ ++ G
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAFDISIDNGN 84
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
AA+ G + V+ L+ D+ A+D +G PLH+AA G ++V+ L A
Sbjct: 13 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 37 NRHHETPLHVAALRGHLDFAKEILR 61
+++ TPLH+AA GHL+ K +L
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG 119
D S+PLH+AA+ G++E+VK LL+ D+ A+D G+ ++ G
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNG 101
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
AA+ G + V+ L+ D+ A+D +G PLH+AA G ++V+ L A
Sbjct: 31 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 37 NRHHETPLHVAALRGHLDFAKEIL 60
+++ TPLH+AA GHL+ K +L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 142 SETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
+T LHL V H L FL+ ++L+ ++D G + LHLA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
+PLH+A E+V+ L D+ GR PLH+A VL L +A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 142 SETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
+T LHL V H L FL+ ++L+ ++D G + LHLA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
+PLH+A E+V+ L D+ GR PLH+A VL L +A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 35 VTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
V + +P+H AA G LD K +L D + P+H+A Q+G+ +V L
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLK-VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FL 126
Query: 95 QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
D+ RD G PL +A +G Q LVD+ +
Sbjct: 127 AAESDLH-RRDARGLTPLELALQRG-AQDLVDILQG 160
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
+P+H AA G LD K +L D + P+H+A Q+G+ +V L D+
Sbjct: 70 SPVHDAARTGFLDTLK-VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLH 127
Query: 102 LARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
RD G PL +A +G Q LVD+ +
Sbjct: 128 -RRDARGLTPLELALQRG-AQDLVDILQG 154
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVL 124
+PL +A++ G EIVK+LL++ D+ ARD+ G A + GR +V+
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARIFGRQEVI 183
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 2 ERMESLLYEASVEGNITTXXXXXXXXXXXXXKVVTN---RHHETPLHVAALRGHLDFAKE 58
E +++ L+EA+ GN++ +V N + T L+ A GH D +
Sbjct: 71 ESIDNPLHEAAKRGNLS------WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEX 124
Query: 59 ILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELL 94
+ + + + + + LH AA KGY +IV+ LL
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 71 DSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKG 119
D +PLH+AA++G++EIV+ LL+ D+ A+D G+ ++ G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNG 79
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 81 AAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRA 130
AA+ G + V+ L+ D+ A+D DG PLH+AA +G ++++ L +A
Sbjct: 9 AARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 57
>pdb|3H83|A Chain A, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|B Chain B, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|C Chain C, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|D Chain D, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3HVU|A Chain A, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|B Chain B, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|C Chain C, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|D Chain D, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3KB8|A Chain A, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|B Chain B, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|C Chain C, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|D Chain D, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
Length = 204
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 34 VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRR-SSPLHMAAQKGYVEIVKE 92
+ + + PL + L+G + F ++L+RT E+D SS H G V+I+K+
Sbjct: 51 IAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYL-EMDFMAVSSYGHSTVSTGEVKILKD 109
Query: 93 LLQVNPDMCLARDVDGRNPLHMAAMKGR---IQVLVDLFRAR 131
L V+GR+ L + + + LVDLF+ R
Sbjct: 110 ---------LDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYR 142
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 76 SPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARP--- 132
SPL +AA++ V+ + +LL+ R G LH+AA+ ++ + L A P
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 133 FAAYATTIW-SETVLHLCVKHNQLEALKFLVS 163
F + ++ +T LH+ V + + ++ L++
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 67 AGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMKGRIQVLVD 126
A D+ +PLH A + + + LL+ AR DG PL +AA ++ D
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 127 LFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILHLAV 186
L A A +T LH N EA+ L+ +RD A+DD + L LA
Sbjct: 137 LITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFLAA 192
Query: 187 ADKQIEV 193
+ E
Sbjct: 193 REGSYEA 199
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 34 VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
V + + TPL A L A E L + + DS PLH A G+ +
Sbjct: 229 VNGGQDNATPLIQATAANSL-LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 94 LQVNPDMCLARDVDGRNPLHMA--AMKGRIQVLVDLFRARPFAAYATTIWSETVLHL 148
L+ D+ ARD +GR+PL +A I L+ L + R A ET L +
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI 343
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 34 VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
V + + TPL A L A E L + + DS PLH A G+ +
Sbjct: 229 VNGGQDNATPLIQATAANSL-LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 94 LQVNPDMCLARDVDGRNPLHMA--AMKGRIQVLVDLFRARPFAAYATTIWSETVLHL 148
L+ D+ ARD +GR+PL +A I L+ L + R A ET L +
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI 343
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 34 VVTNRHHETPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKEL 93
V + + TPL A L A E L + + DS PLH A G+ +
Sbjct: 229 VNGGQDNATPLIQATAANSL-LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF 287
Query: 94 LQVNPDMCLARDVDGRNPLHMA--AMKGRIQVLVDLFRARPFAAYATTIWSETVLHL 148
L+ D+ ARD +GR+PL +A I L+ L + R A ET L +
Sbjct: 288 LKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI 343
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 41 ETPLHVAALRGHLDFAKEILRRTPVLAGELD---SRRSSPLHMAAQKGYVEIVKELLQVN 97
+TPLH+A ++G+L ++ ELD + R +PLH+A +V+ L+
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 98 PDMCLARDVDGRNPLHMAA---MKGRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQ 154
+A D G+ H+A ++ L+D A T LH+ V
Sbjct: 70 ASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 155 LEALKFLVSIMNDRDFLNAKDDYGMSILHLAVADKQIEV 193
E ++ L+ D D ++ K G S L AV + + +
Sbjct: 129 QETVQLLLERGADIDAVDIKS--GRSPLIHAVENNSLSM 165
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 66 LAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRN-----PLHMAAMKGR 120
+A D +PLH+A +G + V L VN R++D N PLH+A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRL--VNLFQQGGRELDIYNNLRQTPLHLAVIT-T 57
Query: 121 IQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMNDRDF-LNAKDDYGM 179
+ +V L + A +T HL +H L+ L+ L A++ G+
Sbjct: 58 LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117
Query: 180 SILHLAV 186
+ LH+AV
Sbjct: 118 TALHVAV 124
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 47 AALRGHLDFAKEILRRTPVLAG 68
AA+RG LDFA+ + +R LAG
Sbjct: 221 AAMRGELDFAQSLQQRVATLAG 242
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 42 TPLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMC 101
T LH AA + K ++ + D +P+ +AAQ+G +E+V L+Q +
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
Query: 102 LARDVDGRNPLHMA---AMKGRIQVLVDLF-RARP 132
D H A A +VD+F R RP
Sbjct: 341 AVDATD-----HTARQLAQANNHHNIVDIFDRCRP 370
>pdb|1DKW|A Chain A, Crystal Structure Of Triose-Phosphate Isomerase With
Modified Substrate Binding Site
pdb|1DKW|B Chain B, Crystal Structure Of Triose-Phosphate Isomerase With
Modified Substrate Binding Site
Length = 238
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 22 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNEDSLPSLKDFGVNW 81
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 82 IVLGHSERR 90
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 51 GHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
G + K++++ V+A ++ + + Y E+ K+LLQ NP
Sbjct: 181 GKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANP 228
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 51 GHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
G + K++++ V+A ++ + + Y E+ K+LLQ NP
Sbjct: 181 GKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANP 228
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 51 GHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
G + K++++ V+A ++ + + Y E+ K+LLQ NP
Sbjct: 181 GKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANP 228
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 51 GHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
G + K++++ V+A ++ + + Y E+ K+LLQ NP
Sbjct: 181 GKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANP 228
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 51 GHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNP 98
G + K++++ V+A ++ + + Y E+ K+LLQ NP
Sbjct: 181 GKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANP 228
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 56 AKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMA 115
KE+ +R+ L+ P+ M + GY+ +V +L N + AR V G+N L +
Sbjct: 5 GKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELIIE 63
Query: 116 AMKGRIQVLVDLFRARP 132
A + + V RP
Sbjct: 64 AEREITEPGVKYLTQRP 80
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 85 GYVEIVKELL--QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS 142
G EI + LL NPD+ +D G +H AA G++ L L F A +
Sbjct: 48 GNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGQLDTLQTLLE---FQADVNIEDN 101
Query: 143 ET--VLHLCVKHNQLEALKFLV 162
E LHL K L ++FLV
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLV 123
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
PLH+AA GHL + +++ T G + + + +A G E+V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 55 FAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM 114
KE+ +R+ L+ P+ M + GY+ +V +L N + AR V G+N L +
Sbjct: 4 LGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELII 62
Query: 115 AAMKGRIQVLVDLFRARP 132
A + + V RP
Sbjct: 63 EAEREITEPGVKYLTQRP 80
>pdb|1TRI|A Chain A, The Crystal Structure Of An Engineered Monomeric
Triosephosphate Isomerase, Monotim: The Correct
Modelling Of An Eight-Residue Loop
Length = 243
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 24 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNADALASLKDFGVNW 83
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 84 IVLGHSERR 92
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
PLH+AA GHL + +++ T G + + + +A G E+V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
PLH+AA GHL + +++ T G + + + +A G E+V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
PLH+AA GHL + +++ T G + + + +A G E+V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 85 GYVEIVKELL--QVNPDMCLARDVDGRNPLHMAAMKGRIQVLVDLFRARPFAAYATTIWS 142
G EI + LL NPD+ +D G +H AA G + L L F A +
Sbjct: 48 GNPEIARRLLLRGANPDL---KDRTGNAVIHDAARAGFLDTLQTLLE---FQADVNIEDN 101
Query: 143 ET--VLHLCVKHNQLEALKFLV 162
E LHL K L ++FLV
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 PLHVAALRGHLDFAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVN 97
PLH+AA GHL + +++ T G + + + +A G E+V L+Q N
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS-LMQAN 159
>pdb|1TTI|A Chain A, Three New Crystal Structures Of Point Mutation Variants Of
Monotim: Conformational Flexibility Of Loop-1,Loop-4 And
Loop-8
Length = 243
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 24 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNADGLASLKDFGVNW 83
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 84 IVLGHSERR 92
>pdb|1ML1|A Chain A, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|C Chain C, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|E Chain E, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|G Chain G, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|I Chain I, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
pdb|1ML1|K Chain K, Protein Engineering With Monomeric Triosephosphate
Isomerase: The Modelling And Structure Verification Of A
Seven Residue Loop
Length = 243
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 24 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNADALASLKDFGVNW 83
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 84 IVLGHSERR 92
>pdb|2V2D|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2H|A Chain A, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2H|B Chain B, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
pdb|2V2H|C Chain C, The A178l Mutation In The C-Terminal Hinge Of The Flexible
Loop-6 Of Triosephosphate Isomerase (Tim) Induces A More
Closed Conformation Of This Hinge Region In Dimeric And
Monomeric Tim
Length = 242
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 23 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNADALASLKDFGVNW 82
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 83 IVLGHSERR 91
>pdb|2VEK|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEK|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEL|A Chain A, Structure-based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEL|B Chain B, Structure-based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEM|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEM|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEN|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEN|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2X16|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X16|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1R|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1R|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1S|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1S|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1T|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1T|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1U|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X1U|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X2G|A Chain A, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
pdb|2X2G|B Chain B, Crystallographic Binding Studies With An Engineered
Monomeric Variant Of Triosephosphate Isomerase
Length = 238
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 22 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNADALASLKDFGVNW 81
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 82 IVLGHSERR 90
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 55 FAKEILRRTPVLAGELDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHM 114
KE+ +R+ L+ P+ M + GY+ +V +L N + AR V G+N L +
Sbjct: 4 LGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR-VSGQNELII 62
Query: 115 AAMKGRIQVLVDLFRARP 132
A + + V RP
Sbjct: 63 EAEREITEPGVKYLTQRP 80
>pdb|2VEI|A Chain A, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEI|B Chain B, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
pdb|2VEI|C Chain C, Structure-Based Enzyme Engineering Efforts With An
Inactive Monomeric Tim Variant: The Importance Of A
Single Point Mutation For Generating An Active Site With
Suitable Binding Properties
Length = 238
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 124 LVDLFRARPFAAYATTIWSETVLHLCVKHNQLEALKFLVSIMN--DRDFLNAKDDYGMSI 181
L+DLF + + + T +HL + +L KF+++ N + D L + D+G++
Sbjct: 22 LIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAGNADALASLKDFGVNW 81
Query: 182 LHLAVADKQ 190
+ L ++++
Sbjct: 82 IVLGHSERR 90
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 141 WSETVLHLCVKHNQLEALKFLVSIMNDRDFLNAKDDYGMSILH--LAVADKQIE 192
+ E L L NQL +KFL+ ++A+D G ++LH + VAD ++
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200
>pdb|1VQ0|A Chain A, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VQ0|B Chain B, Crystal Structure Of 33 Kda Chaperonin (Heat Shock Protein
33 Homolog) (Hsp33) (Tm1394) From Thermotoga Maritima At
2.20 A Resolution
Length = 302
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 63 TPVLAGE----LDSRRSSPLHMAAQKGYVEIVKELLQVNPDMCLARDVDGRNPLHMAAMK 118
TP LA + LD + P+ + E NP + L + G+ + A +
Sbjct: 63 TPWLAEKERWTLDIEGNGPIRRVVAQSTSEFTVRGYVANPKVELPLNEKGKFDVAGAIGQ 122
Query: 119 GRIQVLVDLFRARPFAAYATTIWSETVLHLCVKHNQLEAL--KFLVSIMNDRDFLNAKDD 176
G ++V+ DL PF + + E L E + F + ++ D D +
Sbjct: 123 GVLRVVRDLGLKTPFVSQVPLVSGEIAEDLAYYFAVSEQIPSAFSIGVLVDSDGVKIAGG 182
Query: 177 YGMSILHLAVADKQIEV 193
+ + I+ + +++E+
Sbjct: 183 FAVQIIDRTLEQEKVEM 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,954,098
Number of Sequences: 62578
Number of extensions: 170750
Number of successful extensions: 1110
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 381
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)