Query 029475
Match_columns 193
No_of_seqs 110 out of 522
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 13:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2667 COPII vesicle protein 100.0 5.3E-60 1.2E-64 418.0 18.7 183 8-192 190-378 (379)
2 PF07970 COPIIcoated_ERV: Endo 100.0 4.2E-58 9.2E-63 384.0 18.2 171 3-173 44-222 (222)
3 PF12421 DUF3672: Fibronectin 52.9 11 0.00024 29.2 2.2 23 11-33 30-52 (136)
4 PF10399 UCR_Fe-S_N: Ubiquitin 48.5 3.6 7.9E-05 25.6 -0.9 31 145-175 8-38 (41)
5 PF01034 Syndecan: Syndecan do 37.5 11 0.00025 25.7 0.1 9 182-190 35-43 (64)
6 COG3765 WzzB Chain length dete 32.3 29 0.00064 31.2 1.8 37 133-171 299-335 (347)
7 PF04971 Lysis_S: Lysis protei 29.8 18 0.00039 25.0 0.1 28 159-186 36-64 (68)
8 PF05365 UCR_UQCRX_QCR9: Ubiqu 28.6 43 0.00093 22.1 1.7 30 156-185 14-43 (55)
9 PF01102 Glycophorin_A: Glycop 26.7 31 0.00066 26.5 0.8 11 176-186 84-94 (122)
10 PF10661 EssA: WXG100 protein 25.9 26 0.00057 27.5 0.4 13 157-169 128-140 (145)
11 PF15631 Imm-NTF2-2: NTF2 fold 23.8 56 0.0012 22.4 1.6 26 12-37 30-55 (66)
12 KOG2014 SMT3/SUMO-activating c 23.2 25 0.00053 31.4 -0.3 11 157-167 286-296 (331)
13 PF11888 DUF3408: Protein of u 22.5 63 0.0014 24.8 1.9 31 148-178 86-117 (136)
14 KOG0910 Thioredoxin-like prote 21.3 83 0.0018 25.0 2.4 21 87-107 108-128 (150)
15 PF07413 Herpes_UL37_2: Betahe 20.6 83 0.0018 27.5 2.4 37 142-178 228-267 (276)
16 KOG4085 Uncharacterized conser 20.3 52 0.0011 26.3 1.0 20 149-168 25-44 (175)
No 1
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-60 Score=417.97 Aligned_cols=183 Identities=45% Similarity=0.800 Sum_probs=161.9
Q ss_pred hccCCCcceEEEEEEEeeeeeEEEEEEcCCc----ceeeeehhCCCccccccEEEEEeEecCCCCCCCCCCCCeeEeecC
Q 029475 8 ALESGEGCRVYGVLDVQRVAGNFHISVHGLN----IYVAQMIFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGTVRMLHD 83 (193)
Q Consensus 8 ~~~~~egCri~G~~~VnkV~GnfhI~~~~~~----~~~~~~~~~~~~~~N~SH~I~~lsFG~~~~~~~~PLdg~~~~~~~ 83 (193)
+.+.+|||||+|++.||||||||||++.+.. .+.++.. ..+++|+||+|||||||+.+|++.|||||+..++.+
T Consensus 190 ~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~hd~~--~~~~~n~SH~InhLSFG~~~p~~~nPLdG~~~~~~~ 267 (379)
T KOG2667|consen 190 AEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVHDLS--LLDNLNFSHRINHLSFGEYIPGIVNPLDGTNFIANE 267 (379)
T ss_pred CCCCCCceEEEEEEEEeeecceEEEccCCCccccccccchhh--hcccCCceEEEeeeccCCCCcccccCCCCccccccC
Confidence 4456899999999999999999999974211 1111111 014699999999999999999999999999888888
Q ss_pred CceeeEEEEEEEEEEEEeecCceeeeeeeEEEEEEEeecC-CCC-CcceEEEEEEccceEEEEEeeeccHHHHHHhHhhh
Q 029475 84 TSGTFKYYIKIVPTEYRYISKDVLPTNQFSVTEYFSTINE-FDR-TWPAVYFLYDLSPITVTIKEERRSFLHLITRLCAV 161 (193)
Q Consensus 84 ~~~~~~YflkvVPT~y~~~~~~~~~t~QySvt~~~~~~~~-~~~-~~PgI~F~Yd~SPi~v~~~e~~~s~~~flt~lcaI 161 (193)
...+|+||+|||||.|.+.++.++.|||||||++.+.... .++ ++|||||+||+|||+|+++|+|.||+|||||||||
T Consensus 268 ~~~~~~Yf~KvVPT~y~~~~~~~~~T~QysVt~~~~~~~~~~~~~~~PGifF~YelSPl~V~v~E~r~sf~~Flt~lCAI 347 (379)
T KOG2667|consen 268 HLTTFQYFLKVVPTVYKYKSGRVIDTNQYSVTEYEYVLHSHRAKSGIPGIFFKYELSPLMVKVTEERQSFSHFLTRLCAI 347 (379)
T ss_pred CccceeeEEEEcceEEEeecCceecceeeeeeeeEEeccccccccCCCeEEEEEecCceEEEEEeccccHHHHHHHHHHH
Confidence 8899999999999999999999999999999999988763 333 89999999999999999999999999999999999
Q ss_pred ccceeeehhhhHHHHHHHHHHHcCCCccCCC
Q 029475 162 LGGTFALTGMLDRWMYRLLEALTKPSARSVL 192 (193)
Q Consensus 162 iGGvftv~g~iD~~~~~~~~~~~k~~~~~~~ 192 (193)
|||+|||||+||++++.+.++++++.+.+|+
T Consensus 348 iGGvftvagiid~~~~~~~~~i~~k~~~gk~ 378 (379)
T KOG2667|consen 348 IGGVFTVAGILDSLLYHILELIKGKIALGKY 378 (379)
T ss_pred hcceeehHHHHHHHHHHHHHHHhcchhhhcc
Confidence 9999999999999999999999988888876
No 2
>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins. One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].
Probab=100.00 E-value=4.2e-58 Score=384.04 Aligned_cols=171 Identities=43% Similarity=0.812 Sum_probs=148.3
Q ss_pred hhhhhhccCCCcceEEEEEEEeeeeeEEEEEEcCCcc----eeeee-hhCCCccccccEEEEEeEecCCCCCCCCCCCCe
Q 029475 3 KKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNI----YVAQM-IFGGAKNVNVSHVIHDLSFGPKYPGIHNPLDGT 77 (193)
Q Consensus 3 ~~~~~~~~~~egCri~G~~~VnkV~GnfhI~~~~~~~----~~~~~-~~~~~~~~N~SH~I~~lsFG~~~~~~~~PLdg~ 77 (193)
++++.+.+.+|||||+|++.||||||||||+++.... +.++. .+.....+|+||+|||||||+++|+..|||||+
T Consensus 44 ~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~hd~~~~~~~~~~N~SH~I~~lsFG~~~~~~~~PLdg~ 123 (222)
T PF07970_consen 44 KKIKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSFQQDGGHIHDLSPFDDEPKFNFSHTINHLSFGEEIPGIVNPLDGT 123 (222)
T ss_pred hhhhhhccCCCCCEEEEEEEEEEEEEEEEEEecchhccCCcceeehhhhccccCCCCCeEEEEEEeccccccccccccCc
Confidence 4566777778999999999999999999999865321 11111 122111799999999999999999999999999
Q ss_pred eEe--ecCCceeeEEEEEEEEEEEEeecCceeeeeeeEEEEEEEeecCCC-CCcceEEEEEEccceEEEEEeeeccHHHH
Q 029475 78 VRM--LHDTSGTFKYYIKIVPTEYRYISKDVLPTNQFSVTEYFSTINEFD-RTWPAVYFLYDLSPITVTIKEERRSFLHL 154 (193)
Q Consensus 78 ~~~--~~~~~~~~~YflkvVPT~y~~~~~~~~~t~QySvt~~~~~~~~~~-~~~PgI~F~Yd~SPi~v~~~e~~~s~~~f 154 (193)
.++ .+....+|+||||||||+|...++..++|||||+|++.+.+.... .++|||||+||||||+|+++++|+||+||
T Consensus 124 ~~~~~~~~~~~~~~YflkvVPT~y~~~~~~~~~t~qYsvt~~~~~~~~~~~~~~PGI~F~Yd~SPi~v~~~~~r~s~~~f 203 (222)
T PF07970_consen 124 QKIVQTDNGNYMYQYFLKVVPTTYEDLDGFSIETYQYSVTEHSRPLNGGSSGGLPGIFFKYDFSPIMVVITEDRKSFLHF 203 (222)
T ss_pred cccccCCCCceeEEEEEEEeeeeeEeccccccccccccceeeeeeccCCCCCCCceEEEEEeceeEEEEEEEecCCHHHH
Confidence 883 466788999999999999999988767999999999999987654 78999999999999999999999999999
Q ss_pred HHhHhhhccceeeehhhhH
Q 029475 155 ITRLCAVLGGTFALTGMLD 173 (193)
Q Consensus 155 lt~lcaIiGGvftv~g~iD 173 (193)
||+||||||||||++||||
T Consensus 204 lt~lcaIiGGvftv~gliD 222 (222)
T PF07970_consen 204 LTRLCAIIGGVFTVAGLID 222 (222)
T ss_pred HHHHHHHhchHheEEEecC
Confidence 9999999999999999998
No 3
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=52.94 E-value=11 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.3
Q ss_pred CCCcceEEEEEEEeeeeeEEEEE
Q 029475 11 SGEGCRVYGVLDVQRVAGNFHIS 33 (193)
Q Consensus 11 ~~egCri~G~~~VnkV~GnfhI~ 33 (193)
..|.|.+.|+++.+++-|++--+
T Consensus 30 ~~~~~~~~Gtv~A~~i~GDiv~~ 52 (136)
T PF12421_consen 30 IAESCTFKGTVYANKIIGDIVKA 52 (136)
T ss_pred EcccceEEeEEEehhEecceeEE
Confidence 37899999999999999997654
No 4
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=48.49 E-value=3.6 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=23.9
Q ss_pred EeeeccHHHHHHhHhhhccceeeehhhhHHH
Q 029475 145 KEERRSFLHLITRLCAVLGGTFALTGMLDRW 175 (193)
Q Consensus 145 ~e~~~s~~~flt~lcaIiGGvftv~g~iD~~ 175 (193)
..+|+.|+...+...|.+|++.++.-++++|
T Consensus 8 ~~~RRdFL~~at~~~gavG~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAAAAAWPFVSSM 38 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888888899999999988887777654
No 5
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=37.52 E-value=11 Score=25.67 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=0.7
Q ss_pred HHcCCCccC
Q 029475 182 ALTKPSARS 190 (193)
Q Consensus 182 ~~~k~~~~~ 190 (193)
.++|+++++
T Consensus 35 R~rkkdEGS 43 (64)
T PF01034_consen 35 RMRKKDEGS 43 (64)
T ss_dssp --S------
T ss_pred HHHhcCCCC
Confidence 456777664
No 6
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=32.34 E-value=29 Score=31.22 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.9
Q ss_pred EEEEccceEEEEEeeeccHHHHHHhHhhhccceeeehhh
Q 029475 133 FLYDLSPITVTIKEERRSFLHLITRLCAVLGGTFALTGM 171 (193)
Q Consensus 133 F~Yd~SPi~v~~~e~~~s~~~flt~lcaIiGGvftv~g~ 171 (193)
|+|+.+|-.=+-+ ..|=--+++-+.|+|||++.+...
T Consensus 299 yRYl~~P~~Pvkr--d~PrrA~ilil~~LiGgm~g~g~v 335 (347)
T COG3765 299 YRYLQKPTLPVKR--DSPRRAIILILGALIGGMLGAGVV 335 (347)
T ss_pred EEecCCCCCCCcC--CCcchHHHHHHHHHHHHHHHHHHH
Confidence 7888888665443 255568899999999999987764
No 7
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=29.81 E-value=18 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=19.8
Q ss_pred hhhcccee-eehhhhHHHHHHHHHHHcCC
Q 029475 159 CAVLGGTF-ALTGMLDRWMYRLLEALTKP 186 (193)
Q Consensus 159 caIiGGvf-tv~g~iD~~~~~~~~~~~k~ 186 (193)
.+|+||++ ++++++-.+.|+..+--.|.
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 47888876 78888888888765544333
No 8
>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa. Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....
Probab=28.62 E-value=43 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=21.7
Q ss_pred HhHhhhccceeeehhhhHHHHHHHHHHHcC
Q 029475 156 TRLCAVLGGTFALTGMLDRWMYRLLEALTK 185 (193)
Q Consensus 156 t~lcaIiGGvftv~g~iD~~~~~~~~~~~k 185 (193)
+-+.+|++|.|+.-..+|.....+.+.++|
T Consensus 14 ~y~~~i~~gaf~fe~~fd~~~d~~w~~~Nk 43 (55)
T PF05365_consen 14 TYVLTIFAGAFFFERAFDSATDKIWDSINK 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 346788899998888888877666655543
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.66 E-value=31 Score=26.49 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=3.8
Q ss_pred HHHHHHHHcCC
Q 029475 176 MYRLLEALTKP 186 (193)
Q Consensus 176 ~~~~~~~~~k~ 186 (193)
+....+.++|+
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 33344445444
No 10
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=25.88 E-value=26 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=6.7
Q ss_pred hHhhhccceeeeh
Q 029475 157 RLCAVLGGTFALT 169 (193)
Q Consensus 157 ~lcaIiGGvftv~ 169 (193)
.||+|.||+|+++
T Consensus 128 ~ll~i~~giy~~~ 140 (145)
T PF10661_consen 128 ILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 11
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=23.84 E-value=56 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCcceEEEEEEEeeeeeEEEEEEcCC
Q 029475 12 GEGCRVYGVLDVQRVAGNFHISVHGL 37 (193)
Q Consensus 12 ~egCri~G~~~VnkV~GnfhI~~~~~ 37 (193)
++.--|.|++..+...|++||.....
T Consensus 30 ~~~WiV~Gtl~~~~~GGv~~I~I~K~ 55 (66)
T PF15631_consen 30 GDSWIVEGTLPPGMLGGVFYIEIRKK 55 (66)
T ss_pred CCeEEEEeecCCCccCCeEEEEEEcc
Confidence 34477999998888999999987544
No 12
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=25 Score=31.35 Aligned_cols=11 Identities=55% Similarity=1.120 Sum_probs=9.0
Q ss_pred hHhhhccceee
Q 029475 157 RLCAVLGGTFA 167 (193)
Q Consensus 157 ~lcaIiGGvft 167 (193)
=+|||||||.+
T Consensus 286 Pv~AvVGGiva 296 (331)
T KOG2014|consen 286 PVCAVVGGILA 296 (331)
T ss_pred chhhhhhhHhH
Confidence 47999999863
No 13
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=22.52 E-value=63 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=26.4
Q ss_pred eccHHHHHHhHhhhcc-ceeeehhhhHHHHHH
Q 029475 148 RRSFLHLITRLCAVLG-GTFALTGMLDRWMYR 178 (193)
Q Consensus 148 ~~s~~~flt~lcaIiG-Gvftv~g~iD~~~~~ 178 (193)
+..+..=|.++..+|| +=.+++|+||.++-.
T Consensus 86 ~~e~h~~l~~Iv~~ig~~~~si~~yidNIL~~ 117 (136)
T PF11888_consen 86 SRETHERLSRIVRVIGERKMSISGYIDNILRH 117 (136)
T ss_pred CHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 4667888999999999 669999999999854
No 14
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=83 Score=25.03 Aligned_cols=21 Identities=24% Similarity=0.331 Sum_probs=17.6
Q ss_pred eeEEEEEEEEEEEEeecCcee
Q 029475 87 TFKYYIKIVPTEYRYISKDVL 107 (193)
Q Consensus 87 ~~~YflkvVPT~y~~~~~~~~ 107 (193)
.-+|.++.|||.....+|+..
T Consensus 108 a~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred HhhcceeeeeEEEEEECCEEe
Confidence 337999999999998888754
No 15
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=20.63 E-value=83 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=26.2
Q ss_pred EEEEeeeccHHHH---HHhHhhhccceeeehhhhHHHHHH
Q 029475 142 VTIKEERRSFLHL---ITRLCAVLGGTFALTGMLDRWMYR 178 (193)
Q Consensus 142 v~~~e~~~s~~~f---lt~lcaIiGGvftv~g~iD~~~~~ 178 (193)
..+..+.+.+.+. ++++|+++||.|++.+++=-+.-+
T Consensus 228 ~~~~~~~~~l~~~~~~~~g~~~v~~G~~~lL~LFc~l~~~ 267 (276)
T PF07413_consen 228 FILRVDYRALGHWLAALIGMFFVASGAFMLLSLFCCLSIW 267 (276)
T ss_pred EEEecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555666655 889999999999998776554443
No 16
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=52 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.7
Q ss_pred ccHHHHHHhHhhhccceeee
Q 029475 149 RSFLHLITRLCAVLGGTFAL 168 (193)
Q Consensus 149 ~s~~~flt~lcaIiGGvftv 168 (193)
+=|+.|+.++.||+|+++.+
T Consensus 25 pWw~r~l~rl~gilgaf~~~ 44 (175)
T KOG4085|consen 25 PWWYRWLCRLSGILGAFSCA 44 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999998863
Done!