Query 029475
Match_columns 193
No_of_seqs 110 out of 522
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 19.0 26 0.0009 21.1 0.2 14 159-172 15-28 (44)
2 3cx5_I Cytochrome B-C1 complex 17.9 51 0.0017 21.5 1.4 27 158-184 17-43 (65)
3 1pp9_J Ubiquinol-cytochrome C 14.3 82 0.0028 20.3 1.7 28 157-184 20-47 (62)
4 2l2t_A Receptor tyrosine-prote 12.9 43 0.0015 20.2 0.0 14 159-172 14-27 (44)
5 3lti_A DNA-directed RNA polyme 9.5 91 0.0031 26.3 0.9 28 129-156 33-64 (296)
6 3dsh_A IRF-5, interferon regul 7.9 2.2E+02 0.0074 23.2 2.6 29 59-99 164-192 (246)
7 1y8q_A Ubiquitin-like 1 activa 7.8 59 0.002 27.5 -1.0 12 155-166 299-310 (346)
8 3arc_X Photosystem II PSBX pro 7.6 1.4E+02 0.0048 17.5 0.9 19 149-169 4-22 (39)
9 2lx0_A Membrane fusion protein 6.1 2.1E+02 0.0073 15.5 1.1 13 174-186 20-32 (32)
10 3r8s_F 50S ribosomal protein L 6.0 3.5E+02 0.012 20.8 2.7 25 138-162 82-106 (177)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.05 E-value=26 Score=21.15 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=9.1
Q ss_pred hhhccceeeehhhh
Q 029475 159 CAVLGGTFALTGML 172 (193)
Q Consensus 159 caIiGGvftv~g~i 172 (193)
.++|||++.++-++
T Consensus 15 ~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 15 TGMVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 36677777766555
No 2
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=17.90 E-value=51 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=18.6
Q ss_pred HhhhccceeeehhhhHHHHHHHHHHHc
Q 029475 158 LCAVLGGTFALTGMLDRWMYRLLEALT 184 (193)
Q Consensus 158 lcaIiGGvftv~g~iD~~~~~~~~~~~ 184 (193)
+.+|++|.|+.-..+|...-.+...++
T Consensus 17 ~~~I~~gaf~fE~~fd~~~d~iw~~~N 43 (65)
T 3cx5_I 17 VGTIFAGAFVFQTVFDTAITSWYENHN 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 567888888777777776665555543
No 3
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=14.32 E-value=82 Score=20.32 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=19.5
Q ss_pred hHhhhccceeeehhhhHHHHHHHHHHHc
Q 029475 157 RLCAVLGGTFALTGMLDRWMYRLLEALT 184 (193)
Q Consensus 157 ~lcaIiGGvftv~g~iD~~~~~~~~~~~ 184 (193)
-+.+|++|.|+.-..+|.....+.+.++
T Consensus 20 y~~~i~~gaf~fe~~~d~~~d~iw~~~N 47 (62)
T 1pp9_J 20 FALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 4567888888877777777766555544
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.86 E-value=43 Score=20.20 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=9.5
Q ss_pred hhhccceeeehhhh
Q 029475 159 CAVLGGTFALTGML 172 (193)
Q Consensus 159 caIiGGvftv~g~i 172 (193)
.+++||++.++-+.
T Consensus 14 ~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 14 AGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHH
Confidence 46777777766555
No 5
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=9.54 E-value=91 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=15.4
Q ss_pred ceEEEEEEccc---eEEEEEeee-ccHHHHHH
Q 029475 129 PAVYFLYDLSP---ITVTIKEER-RSFLHLIT 156 (193)
Q Consensus 129 PgI~F~Yd~SP---i~v~~~e~~-~s~~~flt 156 (193)
-|.++.|++.+ +-|.+...| -|..-||-
T Consensus 33 RGsWlefe~d~~d~~~vrIdr~rK~p~t~lLr 64 (296)
T 3lti_A 33 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILR 64 (296)
T ss_dssp BSCCEEEEECTTSCEEEEETTCCCEETHHHHH
T ss_pred CCceEEEEEcCCCeEEEEEcCcccchHHHHHH
Confidence 35566666665 566665545 34444443
No 6
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens}
Probab=7.94 E-value=2.2e+02 Score=23.15 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=17.8
Q ss_pred EEeEecCCCCCCCCCCCCeeEeecCCceeeEEEEEEEEEEE
Q 029475 59 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEY 99 (193)
Q Consensus 59 ~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~YflkvVPT~y 99 (193)
=.|.||++.|.. .|...+ ..+ +||||+.-
T Consensus 164 I~LcFGEe~pd~-~p~ekk-------LI~----VqV~p~~a 192 (246)
T 3dsh_A 164 IFFCFGEEWPDR-KPREKK-------LIT----VQVVPVAA 192 (246)
T ss_dssp EEEEESSCSSCS-SCGGGC-------SEE----EEEEEHHH
T ss_pred EEEEECCcCCCC-Cccccc-------EEE----EEEEHHHH
Confidence 468999988753 344322 222 66898765
No 7
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=7.80 E-value=59 Score=27.49 Aligned_cols=12 Identities=42% Similarity=1.046 Sum_probs=9.2
Q ss_pred HHhHhhhcccee
Q 029475 155 ITRLCAVLGGTF 166 (193)
Q Consensus 155 lt~lcaIiGGvf 166 (193)
|..+|||+||+.
T Consensus 299 l~pv~AiiGGi~ 310 (346)
T 1y8q_A 299 MAPVCAVVGGIL 310 (346)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 667788888875
No 8
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=7.59 E-value=1.4e+02 Score=17.49 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=13.1
Q ss_pred ccHHHHHHhHhhhccceeeeh
Q 029475 149 RSFLHLITRLCAVLGGTFALT 169 (193)
Q Consensus 149 ~s~~~flt~lcaIiGGvftv~ 169 (193)
+|+..||.++.| ||+..++
T Consensus 4 pSL~nFl~Sl~a--G~vvvv~ 22 (39)
T 3arc_X 4 PSLKGFFIGLLS--GAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHH
Confidence 678889988854 6655444
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.10 E-value=2.1e+02 Score=15.50 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCC
Q 029475 174 RWMYRLLEALTKP 186 (193)
Q Consensus 174 ~~~~~~~~~~~k~ 186 (193)
++-|.+++.++|+
T Consensus 20 afgfwlfkylqkk 32 (32)
T 2lx0_A 20 AFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcC
Confidence 3455666777664
No 10
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=5.98 E-value=3.5e+02 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.4
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhc
Q 029475 138 SPITVTIKEERRSFLHLITRLCAVL 162 (193)
Q Consensus 138 SPi~v~~~e~~~s~~~flt~lcaIi 162 (193)
.||.++++-.....++||-+++.++
T Consensus 82 ~piG~kVTLRg~~m~~FL~kli~~v 106 (177)
T 3r8s_F 82 YPIGCKVTLRGERMWEFFERLITIA 106 (177)
T ss_dssp CEEEEEEEECSHHHHHHHHHHHHTT
T ss_pred CEeeEEEEEccHHHHHHHHHHHHHh
Confidence 3999999999999999999998775
Done!