Query 029475
Match_columns 193
No_of_seqs 110 out of 522
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 22:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5i1 f.23.14.1 (I:4-58) Sub 13.2 38 0.0028 19.9 1.4 27 158-184 15-41 (55)
2 d1vg0a1 c.3.1.3 (A:3-444,A:558 12.8 42 0.0031 28.1 2.1 26 150-175 377-402 (491)
3 d1ppjw_ f.23.14.1 (W:) Subunit 11.4 54 0.0039 19.7 1.7 28 157-184 20-47 (62)
4 d1l9la_ a.64.1.1 (A:) Granulys 11.0 81 0.0059 18.6 2.6 38 149-186 24-63 (74)
5 d1qwta_ b.26.1.3 (A:) Interfer 8.2 1.4E+02 0.01 22.2 3.5 30 59-100 156-185 (239)
6 d1a04a2 c.23.1.1 (A:5-142) Nit 7.8 1.4E+02 0.01 19.2 3.1 31 138-168 1-31 (138)
7 d1q8ba_ d.58.4.6 (A:) Hypothet 7.3 1.5E+02 0.011 18.2 2.8 30 4-33 26-55 (93)
8 d1n9wa1 b.40.4.1 (A:1-93) Aspa 6.9 2.3E+02 0.017 17.2 3.7 30 2-33 5-34 (93)
9 d1mjia_ d.77.1.1 (A:) Ribosoma 5.9 1.5E+02 0.011 20.9 2.5 25 138-162 84-108 (180)
10 d1n69a_ a.64.1.3 (A:) Saposin 5.9 2.2E+02 0.016 16.6 3.0 37 150-186 27-65 (78)
No 1
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.24 E-value=38 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=17.6
Q ss_pred HhhhccceeeehhhhHHHHHHHHHHHc
Q 029475 158 LCAVLGGTFALTGMLDRWMYRLLEALT 184 (193)
Q Consensus 158 lcaIiGGvftv~g~iD~~~~~~~~~~~ 184 (193)
+.+|++|.|+.=..+|.....+.+..+
T Consensus 15 ~~tI~~gAf~fe~~fD~~~d~~we~~N 41 (55)
T d3cx5i1 15 VGTIFAGAFVFQTVFDTAITSWYENHN 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888777666666655554443
No 2
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.78 E-value=42 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=19.5
Q ss_pred cHHHHHHhHhhhccceeeehhhhHHH
Q 029475 150 SFLHLITRLCAVLGGTFALTGMLDRW 175 (193)
Q Consensus 150 s~~~flt~lcaIiGGvftv~g~iD~~ 175 (193)
-+-+=.-|+||+-||+|++-.-|+.+
T Consensus 377 EipQ~FcR~~AV~Gg~Y~L~~~i~~i 402 (491)
T d1vg0a1 377 ELPQCFCRMCAVFGGIYCLRHSVQCL 402 (491)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEE
T ss_pred hHHHHHHHHHHhcCcEEEcCCccceE
Confidence 45566679999999999887655554
No 3
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.39 E-value=54 Score=19.70 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=18.0
Q ss_pred hHhhhccceeeehhhhHHHHHHHHHHHc
Q 029475 157 RLCAVLGGTFALTGMLDRWMYRLLEALT 184 (193)
Q Consensus 157 ~lcaIiGGvftv~g~iD~~~~~~~~~~~ 184 (193)
-+.+|++|.|+.=..+|.....+.+..+
T Consensus 20 f~~tI~~gAf~fE~~fD~~~d~iwe~~N 47 (62)
T d1ppjw_ 20 FALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888888777666666655544443
No 4
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.97 E-value=81 Score=18.63 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=30.2
Q ss_pred ccHHHHHHhHhhhccceee--ehhhhHHHHHHHHHHHcCC
Q 029475 149 RSFLHLITRLCAVLGGTFA--LTGMLDRWMYRLLEALTKP 186 (193)
Q Consensus 149 ~s~~~flt~lcaIiGGvft--v~g~iD~~~~~~~~~~~k~ 186 (193)
..+.++|.++|..+++-+. +-.++|...-.+.+.+...
T Consensus 24 ~~I~~~l~~~C~~lp~~~~~~C~~lv~~Y~~~ii~~l~~~ 63 (74)
T d1l9la_ 24 RSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAG 63 (74)
T ss_dssp HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5688999999999998653 7788888887777777543
No 5
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.19 E-value=1.4e+02 Score=22.20 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEeEecCCCCCCCCCCCCeeEeecCCceeeEEEEEEEEEEEE
Q 029475 59 HDLSFGPKYPGIHNPLDGTVRMLHDTSGTFKYYIKIVPTEYR 100 (193)
Q Consensus 59 ~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~YflkvVPT~y~ 100 (193)
=.|.||+..|.. .|+...- .+ ++|||+.-+
T Consensus 156 i~lcFGeewpd~-~p~ekkL-------I~----VqV~p~~ar 185 (239)
T d1qwta_ 156 LWFCVGESWPQD-QPWTKRL-------VM----VKVVPTCLR 185 (239)
T ss_dssp EEEEECCSCTTC-CTTTTCC-------EE----EEEEEHHHH
T ss_pred EEEEeccccCCC-CCcccce-------EE----EEEEHHHHH
Confidence 369999998743 4665432 12 568887653
No 6
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=7.84 E-value=1.4e+02 Score=19.23 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=26.8
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhccceeee
Q 029475 138 SPITVTIKEERRSFLHLITRLCAVLGGTFAL 168 (193)
Q Consensus 138 SPi~v~~~e~~~s~~~flt~lcaIiGGvftv 168 (193)
.|++|.+-++...+..-+.+++.-.|++..+
T Consensus 1 ePi~VLiVDD~~~~r~~l~~~L~~~~~~~~v 31 (138)
T d1a04a2 1 EPATILLIDDHPMLRTGVKQLISMAPDITVV 31 (138)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCcEEE
Confidence 4999999999999999998888888877765
No 7
>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}
Probab=7.32 E-value=1.5e+02 Score=18.21 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=24.3
Q ss_pred hhhhhccCCCcceEEEEEEEeeeeeEEEEE
Q 029475 4 KVKHALESGEGCRVYGVLDVQRVAGNFHIS 33 (193)
Q Consensus 4 ~~~~~~~~~egCri~G~~~VnkV~GnfhI~ 33 (193)
++.......+||..+--..-..-|+.|.+-
T Consensus 26 ~l~~~tr~E~Gcl~y~~~~d~~~p~~~~~~ 55 (93)
T d1q8ba_ 26 KLEEETNKEEGCITFHAYPLEPSERKIMLW 55 (93)
T ss_dssp HHHHHHTTSTTEEEEEEEECCGGGCEEEEE
T ss_pred HHHHHHhCCCCcEEEEEEecCCCCCEEEEE
Confidence 344555578999999999999999999886
No 8
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=6.89 E-value=2.3e+02 Score=17.16 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=23.5
Q ss_pred hhhhhhhccCCCcceEEEEEEEeeeeeEEEEE
Q 029475 2 IKKVKHALESGEGCRVYGVLDVQRVAGNFHIS 33 (193)
Q Consensus 2 ~~~~~~~~~~~egCri~G~~~VnkV~GnfhI~ 33 (193)
++++++.. ++-=.|.|.+.-.|..|++.|.
T Consensus 5 I~dl~~~~--g~~V~v~GwV~~~R~~gk~~Fi 34 (93)
T d1n9wa1 5 VRDLKAHV--GQEVELLGFLHWRRDLGRIQFL 34 (93)
T ss_dssp GGGGGGCT--TSEEEEEEEEEEEEECSSEEEE
T ss_pred hHHhhhcC--CCEEEEEEEEEeEEeCCCcEEE
Confidence 45555543 6778999999999999998875
No 9
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=5.89 E-value=1.5e+02 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.3
Q ss_pred cceEEEEEeeeccHHHHHHhHhhhc
Q 029475 138 SPITVTIKEERRSFLHLITRLCAVL 162 (193)
Q Consensus 138 SPi~v~~~e~~~s~~~flt~lcaIi 162 (193)
.|+.++++-.+...+.||-+++.++
T Consensus 84 ~piG~kvTLRg~~m~~FL~rli~i~ 108 (180)
T d1mjia_ 84 MPIGLRVTLRRDRMWIFLEKLLNVA 108 (180)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CceeEEEeecHHHHHHHHHHHHHHH
Confidence 5888999999999999999999774
No 10
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.86 E-value=2.2e+02 Score=16.57 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=29.1
Q ss_pred cHHHHHHhHhhhcccee--eehhhhHHHHHHHHHHHcCC
Q 029475 150 SFLHLITRLCAVLGGTF--ALTGMLDRWMYRLLEALTKP 186 (193)
Q Consensus 150 s~~~flt~lcaIiGGvf--tv~g~iD~~~~~~~~~~~k~ 186 (193)
-+.+++-++|..+++-+ .+-.++|...-.+.+.+.+.
T Consensus 27 ~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~~~ 65 (78)
T d1n69a_ 27 ALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHM 65 (78)
T ss_dssp HHHHHHHHHGGGGCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCChHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 36788999999999755 47888888888788777543
Done!