Query 029476
Match_columns 193
No_of_seqs 191 out of 454
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 22:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 48.2 18 0.00063 30.8 4.3 47 80-126 207-264 (297)
2 4f62_A Geranyltranstransferase 44.1 7.5 0.00026 33.6 1.3 49 77-125 210-269 (317)
3 2h8o_A Geranyltranstransferase 43.2 7.7 0.00026 33.8 1.2 47 78-124 251-308 (335)
4 3p8r_A Geranyltranstransferase 42.0 8 0.00027 33.1 1.1 48 77-124 217-275 (302)
5 3llw_A Geranyltranstransferase 41.2 16 0.00055 31.4 2.9 50 77-126 218-276 (311)
6 3lsn_A Geranyltranstransferase 40.6 10 0.00034 32.5 1.5 51 77-127 211-272 (304)
7 3ts7_A Geranyltranstransferase 39.5 9.6 0.00033 33.1 1.2 51 77-127 217-278 (324)
8 1rqj_A Geranyltranstransferase 38.4 11 0.00039 31.9 1.5 42 81-122 215-267 (299)
9 2j1p_A Geranylgeranyl pyrophos 38.2 11 0.00036 32.1 1.3 42 77-121 221-262 (293)
10 3lom_A Geranyltranstransferase 36.2 11 0.00038 32.5 1.1 50 77-126 218-278 (313)
11 2hdi_B Colicin-IA; outer membr 33.9 13 0.00043 27.0 0.9 18 82-99 70-92 (113)
12 3p8l_A Geranyltranstransferase 33.6 13 0.00045 31.8 1.1 47 80-126 217-274 (302)
13 3kra_B Geranyl diphosphate syn 32.0 51 0.0017 27.6 4.5 55 73-127 64-118 (274)
14 1rtr_A Geranyltranstransferase 31.4 17 0.00057 31.0 1.4 49 77-125 206-265 (301)
15 3uca_A Geranyltranstransferase 30.7 14 0.00048 32.0 0.8 49 77-125 239-298 (324)
16 3pde_A Farnesyl-diphosphate sy 30.5 27 0.00094 29.9 2.6 51 77-127 213-274 (309)
17 3npk_A Geranyltranstransferase 28.6 29 0.001 29.4 2.4 46 81-126 207-261 (291)
18 4gnt_B Carbohydrate-responsive 28.4 32 0.0011 18.9 1.7 13 175-187 7-19 (26)
19 3aqb_B Component B of hexapren 21.2 28 0.00094 29.8 0.9 38 77-114 199-247 (325)
20 3ipi_A Geranyltranstransferase 20.4 41 0.0014 28.6 1.8 34 77-110 195-233 (295)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=48.15 E-value=18 Score=30.79 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCChhhh-----------HhcCCcchhHhhchhHHHHHHHHHHHHHH
Q 029476 80 IFAFVNGLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGD-----------r~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y 126 (193)
-.+.+-.|..|+-|+.|| -+.|..|+|+.+|.+++...+--...-+.
T Consensus 207 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 264 (297)
T 3m0g_A 207 ALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 264 (297)
T ss_dssp HHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444699999999886 45789999999999999887665555443
No 2
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=44.11 E-value=7.5 Score=33.65 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTMLVG 125 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll~~~ 125 (193)
+---.+.+-.|..|+-|+.||. +.|..|+|+.+|.+++...+--...-|
T Consensus 210 ~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 269 (317)
T 4f62_A 210 YAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQA 269 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555557999999998764 578999999999999988876655444
No 3
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=43.24 E-value=7.7 Score=33.79 Aligned_cols=47 Identities=21% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHHHH
Q 029476 78 MSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 78 ~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll~~ 124 (193)
---.+.+-.|..|+-|+.||. ++|..|+|+.+|.+++...+--...-
T Consensus 251 g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~ 308 (335)
T 2h8o_A 251 GEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAE 308 (335)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 333444556999999998764 57899999999988877665544443
No 4
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=42.02 E-value=8 Score=33.10 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTMLV 124 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll~~ 124 (193)
+-.-.+.+-.|..|+-|+.||. +.|..|+|+.+|.+++...+--...-
T Consensus 217 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~ 275 (302)
T 3p8r_A 217 YAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQE 275 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556999999988764 67899999999998887776554443
No 5
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=41.19 E-value=16 Score=31.40 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCChhhhH---------hcCCcchhHhhchhHHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK---------KFGMNTLCVLLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr---------~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y 126 (193)
+---.+.+-.|..|+-|+.||. +.|..|+|+.+|.+++....--++.-+.
T Consensus 218 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~ 276 (311)
T 3llw_A 218 FGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVL 276 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556999999999886 5799999999999999877665554443
No 6
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=40.58 E-value=10 Score=32.53 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~ 127 (193)
+-.-.+.+-.|..|+-|+.||. +.|..|+|+.+|.+++...+--...-+.-
T Consensus 211 ~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~ 272 (304)
T 3lsn_A 211 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH 272 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555557999999998864 67899999999999998877666555443
No 7
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=39.47 E-value=9.6 Score=33.08 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCChhhh-----------HhcCCcchhHhhchhHHHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGD-----------r~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~ 127 (193)
+---.+.+-.|..|+-|+.|| -+.|..|+|+.+|.+++...+--...-|.-
T Consensus 217 ~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~ 278 (324)
T 3ts7_A 217 YAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALE 278 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555799999999875 467999999999999998887766555443
No 8
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=38.36 E-value=11 Score=31.94 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHH
Q 029476 81 FAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTM 122 (193)
Q Consensus 81 ~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll 122 (193)
.+.+-.|..|+-|+.||. +.|..|+|+.+|.+++...+--..
T Consensus 215 lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 267 (299)
T 1rqj_A 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLI 267 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 444446999999998764 568999999999987766544433
No 9
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=38.16 E-value=11 Score=32.06 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNT 121 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~l 121 (193)
+-.-.+.+-.|..|+-|+.||. ..|+|+.+|.+++...+--.
T Consensus 221 ~g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 221 FARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 3334445556999999999998 78999999988887775544
No 10
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=36.21 E-value=11 Score=32.47 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y 126 (193)
+-.-.+.+-.|..|+-|+.||. +.|..|+|+.+|.+++...+--...-+.
T Consensus 218 ~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~ 278 (313)
T 3lom_A 218 YGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAM 278 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556999999998864 6799999999999999887765555443
No 11
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=33.90 E-value=13 Score=26.97 Aligned_cols=18 Identities=50% Similarity=0.809 Sum_probs=12.8
Q ss_pred HHHHHHHhc-----CCChhhhHh
Q 029476 82 AFVNGLLKD-----LPDVEGDKK 99 (193)
Q Consensus 82 ~~~i~i~kD-----i~DveGDr~ 99 (193)
..-..|++| -||+|||++
T Consensus 70 dy~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 70 DYKRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp HHHHHTSCCCCSCCSSCHHHHHH
T ss_pred hhhhhhhcCCCCeeecccccchh
Confidence 334456676 489999986
No 12
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=33.64 E-value=13 Score=31.83 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCChhhh-----------HhcCCcchhHhhchhHHHHHHHHHHHHHH
Q 029476 80 IFAFVNGLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 80 l~~~~i~i~kDi~DveGD-----------r~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y 126 (193)
-.+.+-.|..|+-|+.|| -+.|..|+|+.+|.+++...+--...-|.
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444699999998765 56799999999999999887765554443
No 13
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=32.00 E-value=51 Score=27.55 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHhcCCcchhHhhchhHHHHHHHHHHHHHHH
Q 029476 73 LMGAIMSIFAFVNGLLKDLPDVEGDKKFGMNTLCVLLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 73 ~~~~~~~l~~~~i~i~kDi~DveGDr~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~ 127 (193)
-++...=+.=.+.-+-.|+++.+.|.+.|..|.=.++|...+...+-.++..++-
T Consensus 64 ~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 64 AAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3344444455566689999955557679999999999999988888888887776
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=31.44 E-value=17 Score=30.97 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKVFPLCVNTMLVG 125 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~~~l~~~ll~~~ 125 (193)
+-.-.+.+-.|..|+.|+.||. +.|..|+|+.+|.+++...+--...-+
T Consensus 206 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A 265 (301)
T 1rtr_A 206 YSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 265 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556999999998764 468899999999888776655444433
No 15
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=30.67 E-value=14 Score=31.99 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCChhhh-----------HhcCCcchhHhhchhHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKVFPLCVNTMLVG 125 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGD-----------r~~Gi~Tl~v~lG~~~~~~l~~~ll~~~ 125 (193)
+---.+.+-.|..|+-|+.|| -+.|..|+|+.+|.+++...+--...-|
T Consensus 239 ~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A 298 (324)
T 3uca_A 239 FGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455699999998775 5679999999999998887766554443
No 16
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=30.53 E-value=27 Score=29.95 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCChhhh-----------HhcCCcchhHhhchhHHHHHHHHHHHHHHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGD-----------KKFGMNTLCVLLGKEKVFPLCVNTMLVGYG 127 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGD-----------r~~Gi~Tl~v~lG~~~~~~l~~~ll~~~y~ 127 (193)
+-.-.+.+-.|..|+-|+.|| -+.|..|+|+.+|.+++....--++.-|.-
T Consensus 213 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~ 274 (309)
T 3pde_A 213 FADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQA 274 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333445555699999999775 467899999999999998877666665554
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=28.58 E-value=29 Score=29.44 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhhhHh---------cCCcchhHhhchhHHHHHHHHHHHHHH
Q 029476 81 FAFVNGLLKDLPDVEGDKK---------FGMNTLCVLLGKEKVFPLCVNTMLVGY 126 (193)
Q Consensus 81 ~~~~i~i~kDi~DveGDr~---------~Gi~Tl~v~lG~~~~~~l~~~ll~~~y 126 (193)
.+.+-.|..|+-|+.||.+ .|..|+|+.+|.+++..-.--++.-+.
T Consensus 207 lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~ 261 (291)
T 3npk_A 207 LGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECE 261 (291)
T ss_dssp HHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHH
No 18
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=28.38 E-value=32 Score=18.90 Aligned_cols=13 Identities=23% Similarity=0.826 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 029476 175 YMLIWKLTFVEYI 187 (193)
Q Consensus 175 Y~fiW~lf~~ey~ 187 (193)
-+.||.-.|.+|+
T Consensus 7 nnaiwrawyiqyv 19 (26)
T 4gnt_B 7 NNAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHH
Confidence 4689999999986
No 19
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=21.24 E-value=28 Score=29.77 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----------hcCCcchhHhhchhHH
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----------KFGMNTLCVLLGKEKV 114 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----------~~Gi~Tl~v~lG~~~~ 114 (193)
+-.-.+.+-.|..|+-|+.||. +.|..|+|+.++.++.
T Consensus 199 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 199 FGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 3344455556999999988764 5789999999997765
No 20
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=20.39 E-value=41 Score=28.55 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCChhhhH-----hcCCcchhHhhc
Q 029476 77 IMSIFAFVNGLLKDLPDVEGDK-----KFGMNTLCVLLG 110 (193)
Q Consensus 77 ~~~l~~~~i~i~kDi~DveGDr-----~~Gi~Tl~v~lG 110 (193)
+---.+.+-.|..|+.|+.||. +.|..|+|+.++
T Consensus 195 ~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 195 FGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHH
Confidence 3333455556999999999975 468889999998
Done!