Your job contains 1 sequence.
>029477
MAAIANPASFTPLNFSSHLKELPLVNFGSVRPSLRISRLSRLKCTRNVSNLHVIRAQSSP
DYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSE
DKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE
RMAGGWSDISSAV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029477
(193 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2141355 - symbol:GLB1 "GLNB1 homolog" species:... 596 5.1e-58 1
UNIPROTKB|Q55247 - symbol:glnB "Nitrogen regulatory prote... 324 3.4e-29 1
UNIPROTKB|P0A3F4 - symbol:glnB "Nitrogen regulatory prote... 319 1.2e-28 1
TIGR_CMR|GSU_1836 - symbol:GSU_1836 "nitrogen regulatory ... 313 5.0e-28 1
TIGR_CMR|CPS_3917 - symbol:CPS_3917 "Nitrogen regulatory ... 286 3.6e-25 1
UNIPROTKB|Q9KPX3 - symbol:VC_2239 "Nitrogen regulatory pr... 284 5.9e-25 1
TIGR_CMR|SO_3519 - symbol:SO_3519 "nitrogen regulatory pr... 284 5.9e-25 1
TIGR_CMR|VC_2239 - symbol:VC_2239 "nitrogen regulatory pr... 284 5.9e-25 1
TIGR_CMR|GSU_0939 - symbol:GSU_0939 "nitrogen regulatory ... 275 5.3e-24 1
UNIPROTKB|P0A9Z1 - symbol:glnB "PII" species:83333 "Esche... 271 1.4e-23 1
TIGR_CMR|SPO_2294 - symbol:SPO_2294 "nitrogen regulatory ... 270 1.8e-23 1
UNIPROTKB|P64249 - symbol:glnB "Nitrogen regulatory prote... 269 2.3e-23 1
TIGR_CMR|SO_3819 - symbol:SO_3819 "nitrogen regulatory pr... 269 2.3e-23 1
UNIPROTKB|Q9KUB6 - symbol:VC_0606 "Nitrogen regulatory pr... 265 6.1e-23 1
TIGR_CMR|VC_0606 - symbol:VC_0606 "nitrogen regulatory pr... 265 6.1e-23 1
TIGR_CMR|CPS_0641 - symbol:CPS_0641 "nitrogen regulatory ... 256 5.5e-22 1
UNIPROTKB|P0AC55 - symbol:glnK "GlnK" species:83333 "Esch... 255 7.0e-22 1
TIGR_CMR|CHY_0072 - symbol:CHY_0072 "nitrogen regulatory ... 252 1.5e-21 1
TIGR_CMR|SPO_3724 - symbol:SPO_3724 "nitrogen regulatory ... 249 3.0e-21 1
TIGR_CMR|SO_0761 - symbol:SO_0761 "nitrogen regulatory pr... 243 1.3e-20 1
TIGR_CMR|DET_1124 - symbol:DET_1124 "nitrogen regulatory ... 224 1.4e-18 1
TIGR_CMR|GSU_2134 - symbol:GSU_2134 "nitrogen regulatory ... 215 1.2e-17 1
TIGR_CMR|GSU_0831 - symbol:GSU_0831 "nitrogen regulatory ... 191 4.2e-15 1
TIGR_CMR|DET_1157 - symbol:DET_1157 "nitrogen regulatory ... 157 1.7e-11 1
TIGR_CMR|DET_1156 - symbol:DET_1156 "nitrogen regulatory ... 155 2.8e-11 1
>TAIR|locus:2141355 [details] [associations]
symbol:GLB1 "GLNB1 homolog" species:3702 "Arabidopsis
thaliana" [GO:0006808 "regulation of nitrogen utilization"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0030234 "enzyme regulator activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0010307 "acetylglutamate kinase
regulator activity" evidence=IDA] [GO:2000013 "regulation of
arginine biosynthetic process via ornithine" evidence=TAS]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0042304
"regulation of fatty acid biosynthetic process" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000096 "sulfur amino acid
metabolic process" evidence=RCA] [GO:0006546 "glycine catabolic
process" evidence=RCA] [GO:0006636 "unsaturated fatty acid
biosynthetic process" evidence=RCA] [GO:0006733 "oxidoreduction
coenzyme metabolic process" evidence=RCA] [GO:0006766 "vitamin
metabolic process" evidence=RCA] [GO:0006816 "calcium ion
transport" evidence=RCA] [GO:0007030 "Golgi organization"
evidence=RCA] [GO:0008652 "cellular amino acid biosynthetic
process" evidence=RCA] [GO:0009072 "aromatic amino acid family
metabolic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009409 "response to cold" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009744
"response to sucrose stimulus" evidence=IEP;RCA] [GO:0009749
"response to glucose stimulus" evidence=RCA] [GO:0009750 "response
to fructose stimulus" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0044272 "sulfur compound biosynthetic process"
evidence=RCA] [GO:0006807 "nitrogen compound metabolic process"
evidence=ISS] [GO:0009416 "response to light stimulus"
evidence=IEP] [GO:0009718 "anthocyanin-containing compound
biosynthetic process" evidence=IMP] InterPro:IPR002187
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00638
PROSITE:PS51343 SMART:SM00938 GO:GO:0005829 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0000287
GO:GO:0009718 GO:GO:0009744 GO:GO:0042304 GO:GO:0006351
EMBL:AC007138 EMBL:AL161493 GO:GO:0009416 GO:GO:0006808
GO:GO:0009534 GO:GO:0006807 InterPro:IPR011322 SUPFAM:SSF54913
EMBL:AF095455 EMBL:BT005209 EMBL:AK228189 IPI:IPI00521950
PIR:D85024 RefSeq:NP_192099.1 UniGene:At.3850 PDB:2O66 PDB:2O67
PDB:2RD5 PDBsum:2O66 PDBsum:2O67 PDBsum:2RD5
ProteinModelPortal:Q9ZST4 SMR:Q9ZST4 DIP:DIP-35001N IntAct:Q9ZST4
STRING:Q9ZST4 PaxDb:Q9ZST4 PRIDE:Q9ZST4 EnsemblPlants:AT4G01900.1
GeneID:828213 KEGG:ath:AT4G01900 TAIR:At4g01900 eggNOG:COG0347
HOGENOM:HOG000241199 InParanoid:Q9ZST4 OMA:KFYKVEA PhylomeDB:Q9ZST4
ProtClustDB:CLSN2685544 EvolutionaryTrace:Q9ZST4
Genevestigator:Q9ZST4 GO:GO:0010307 GO:GO:2000013
Gene3D:3.30.70.120 InterPro:IPR015867 Uniprot:Q9ZST4
Length = 196
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 128/188 (68%), Positives = 142/188 (75%)
Query: 2 AAIANPASFTPLNFSSHLKELPLVNFGSV----RPXXXXXXXXXXKCTRNVSN-LHVIRA 56
A++ P S T L F S K + + S+ R K N S L V+ A
Sbjct: 3 ASMTKPISITSLGFYSDRKNIAFSDCISICSGFRHSRPSCLDLVTKSPSNNSRVLPVVSA 62
Query: 57 QSSPDYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGS 116
Q S DYIPDSKFYKVEAI+RPWR+QQVSSALL +GIRGVTVSDVRGFGAQGGSTERHGGS
Sbjct: 63 QISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGS 122
Query: 117 EFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
EFSEDKFVAKVKMEIVV KDQVE VI+ I+E ARTGEIGDGKIF++PVSDVIRVRTGERG
Sbjct: 123 EFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERG 182
Query: 177 EKAERMAG 184
EKAE+M G
Sbjct: 183 EKAEKMTG 190
>UNIPROTKB|Q55247 [details] [associations]
symbol:glnB "Nitrogen regulatory protein P-II"
species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0030234 GO:GO:0006355 GO:GO:0000166 GO:GO:0050790
GO:GO:0006351 GO:GO:0006808 EMBL:BA000022 GenomeReviews:BA000022_GR
InterPro:IPR011322 SUPFAM:SSF54913 eggNOG:COG0347
Gene3D:3.30.70.120 InterPro:IPR015867 HOGENOM:HOG000017847
KO:K04751 ProtClustDB:CLSK895726 EMBL:X97496 PIR:S76404
RefSeq:NP_441855.2 RefSeq:YP_005651915.1 PDB:1UL3 PDBsum:1UL3
ProteinModelPortal:Q55247 SMR:Q55247 IntAct:Q55247 STRING:Q55247
PhosSite:P0806321 GeneID:12254574 GeneID:952897 KEGG:syn:ssl0707
KEGG:syy:SYNGTS_1962 PATRIC:23841230 OMA:GFIAMTI
EvolutionaryTrace:Q55247 Uniprot:Q55247
Length = 112
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 63/110 (57%), Positives = 88/110 (80%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV + QV+ V+DK++ ARTGEIGDGKIF+ PV V+R+RTGE+ +A
Sbjct: 62 EIVVDEGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111
>UNIPROTKB|P0A3F4 [details] [associations]
symbol:glnB "Nitrogen regulatory protein P-II" species:1140
"Synechococcus elongatus PCC 7942" [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
InterPro:IPR002187 InterPro:IPR002332 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496 PROSITE:PS00638
PROSITE:PS51343 SMART:SM00938 GO:GO:0030234 GO:GO:0006355
GO:GO:0000166 GO:GO:0050790 GO:GO:0006351 GO:GO:0006808
EMBL:CP000100 PDB:2JJ4 PDB:2V5H PDBsum:2JJ4 PDBsum:2V5H
GenomeReviews:CP000100_GR InterPro:IPR011322 SUPFAM:SSF54913
eggNOG:COG0347 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04751 EMBL:M62447 PIR:A39696
RefSeq:YP_399340.1 PDB:1QY7 PDB:2XBP PDB:2XG8 PDB:2XUL PDB:2XZW
PDB:4AFF PDBsum:1QY7 PDBsum:2XBP PDBsum:2XG8 PDBsum:2XUL
PDBsum:2XZW PDBsum:4AFF ProteinModelPortal:P0A3F4 SMR:P0A3F4
DIP:DIP-35002N IntAct:P0A3F4 STRING:P0A3F4 PhosSite:P010479
GeneID:3774842 KEGG:syf:Synpcc7942_0321 PATRIC:23785713
ProtClustDB:CLSK895726 BioCyc:SELO1140:GJWQ-327-MONOMER
EvolutionaryTrace:P0A3F4 Uniprot:P0A3F4
Length = 112
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 64/110 (58%), Positives = 85/110 (77%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 62 EIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>TIGR_CMR|GSU_1836 [details] [associations]
symbol:GSU_1836 "nitrogen regulatory protein P-II"
species:243231 "Geobacter sulfurreducens PCA" [GO:0019740 "nitrogen
utilization" evidence=ISS] [GO:0030234 "enzyme regulator activity"
evidence=ISS] InterPro:IPR002187 InterPro:IPR002332
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04751 RefSeq:NP_952886.1
ProteinModelPortal:Q74C39 SMR:Q74C39 GeneID:2688660
KEGG:gsu:GSU1836 PATRIC:22026529 OMA:MEIIVGD ProtClustDB:CLSK828595
BioCyc:GSUL243231:GH27-1779-MONOMER Uniprot:Q74C39
Length = 112
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 60/110 (54%), Positives = 84/110 (76%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI++P+++ +V AL +GI+G+TV +V+GFG Q G TE + G+E+ D F+ K+KM
Sbjct: 3 KVEAIIKPFKLDEVKEALNEIGIQGITVGEVKGFGRQKGHTELYRGAEYVVD-FIPKIKM 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EI+V+ D V V+D I + A+TG IGDGKIF+ PV +VIR+RTGERGE A
Sbjct: 62 EIIVADDIVSKVVDTIEQAAKTGRIGDGKIFVTPVEEVIRIRTGERGEDA 111
>TIGR_CMR|CPS_3917 [details] [associations]
symbol:CPS_3917 "Nitrogen regulatory protein P-II"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006808
"regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR002332 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496 PROSITE:PS00638
PROSITE:PS51343 SMART:SM00938 GO:GO:0030234 GO:GO:0006355
GO:GO:0050790 GO:GO:0006351 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006808 InterPro:IPR011322 SUPFAM:SSF54913 eggNOG:COG0347
Gene3D:3.30.70.120 InterPro:IPR015867 HOGENOM:HOG000017847
KO:K04751 OMA:TIMRTAQ RefSeq:YP_270575.1 ProteinModelPortal:Q47X95
SMR:Q47X95 STRING:Q47X95 GeneID:3518703 KEGG:cps:CPS_3917
PATRIC:21470725 BioCyc:CPSY167879:GI48-3930-MONOMER Uniprot:Q47X95
Length = 112
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 55/110 (50%), Positives = 82/110 (74%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ V AL +G+ G+TVS+V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKMDDVREALGEIGVTGMTVSEVKGFGRQKGHTELYRGAEYMVD-FLPKVKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIV++K+ VE ++ I+E A+TG+IGDGKIF+ V VIR+RTGE +A
Sbjct: 62 EIVIAKEDVERCVNAILETAQTGKIGDGKIFITDVERVIRIRTGEENREA 111
>UNIPROTKB|Q9KPX3 [details] [associations]
symbol:VC_2239 "Nitrogen regulatory protein P-II"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR002332 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496 PROSITE:PS00638
PROSITE:PS51343 SMART:SM00938 GO:GO:0030234 GO:GO:0003824
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0050790
GO:GO:0006351 GO:GO:0006808 InterPro:IPR011322 SUPFAM:SSF54913
Gene3D:3.30.70.120 InterPro:IPR015867 KO:K04751 OMA:TIMRTAQ
PIR:D82102 RefSeq:NP_231870.1 HSSP:P05826 ProteinModelPortal:Q9KPX3
SMR:Q9KPX3 DNASU:2613161 GeneID:2613161 KEGG:vch:VC2239
PATRIC:20083523 ProtClustDB:CLSK874729 Uniprot:Q9KPX3
Length = 114
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ V AL +GI G+TVS+V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 5 KIEAIIKPFKLDDVREALAEVGITGMTVSEVKGFGRQKGHTELYRGAEYMVD-FLPKVKL 63
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV+ D + +D I+E A+TG+IGDGKIF+ V V+R+RTGE E A
Sbjct: 64 EIVVTDDVADRCVDTIIETAQTGKIGDGKIFITNVERVVRIRTGEEDEDA 113
>TIGR_CMR|SO_3519 [details] [associations]
symbol:SO_3519 "nitrogen regulatory protein P-II 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] InterPro:IPR002187 InterPro:IPR002332
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04751 OMA:TIMRTAQ RefSeq:NP_719066.1
HSSP:P94852 ProteinModelPortal:Q8EBJ6 SMR:Q8EBJ6 GeneID:1171192
KEGG:son:SO_3519 PATRIC:23526728 ProtClustDB:CLSK907204
Uniprot:Q8EBJ6
Length = 112
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 57/110 (51%), Positives = 80/110 (72%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI++P+++ V +L +GI G+TV +V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KVEAIIKPFKLDDVRESLAEIGITGMTVLEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+V+ D V+ ID I+E ARTG+IGDGKIF+ V VIR+RTGE E+A
Sbjct: 62 ELVIQDDLVDQAIDVIVETARTGKIGDGKIFVTDVERVIRIRTGEENEEA 111
>TIGR_CMR|VC_2239 [details] [associations]
symbol:VC_2239 "nitrogen regulatory protein P-II"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006808 "regulation
of nitrogen utilization" evidence=ISS] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0030234 GO:GO:0003824 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050790 GO:GO:0006351 GO:GO:0006808
InterPro:IPR011322 SUPFAM:SSF54913 Gene3D:3.30.70.120
InterPro:IPR015867 KO:K04751 OMA:TIMRTAQ PIR:D82102
RefSeq:NP_231870.1 HSSP:P05826 ProteinModelPortal:Q9KPX3 SMR:Q9KPX3
DNASU:2613161 GeneID:2613161 KEGG:vch:VC2239 PATRIC:20083523
ProtClustDB:CLSK874729 Uniprot:Q9KPX3
Length = 114
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ V AL +GI G+TVS+V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 5 KIEAIIKPFKLDDVREALAEVGITGMTVSEVKGFGRQKGHTELYRGAEYMVD-FLPKVKL 63
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV+ D + +D I+E A+TG+IGDGKIF+ V V+R+RTGE E A
Sbjct: 64 EIVVTDDVADRCVDTIIETAQTGKIGDGKIFITNVERVVRIRTGEEDEDA 113
>TIGR_CMR|GSU_0939 [details] [associations]
symbol:GSU_0939 "nitrogen regulatory protein P-II,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0019740
"nitrogen utilization" evidence=ISS] [GO:0030234 "enzyme regulator
activity" evidence=ISS] InterPro:IPR002187 InterPro:IPR002332
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 RefSeq:NP_951993.1 ProteinModelPortal:Q74EM3
SMR:Q74EM3 GeneID:2688606 KEGG:gsu:GSU0939 PATRIC:22024656
OMA:IPKVKLE ProtClustDB:CLSK828105
BioCyc:GSUL243231:GH27-932-MONOMER Uniprot:Q74EM3
Length = 112
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 51/109 (46%), Positives = 80/109 (73%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+EAI++P+++ +V AL +GI G+TVS+V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKDALNEIGIEGITVSEVKGFGRQKGHTELYRGAEYVVD-FIPKVKLE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
I V+ + V V++ I A+TG IGDGKIF++ + + +R+RTGE+G +A
Sbjct: 63 IAVADELVAKVVETIESTAKTGRIGDGKIFILSLDEAVRIRTGEKGNEA 111
>UNIPROTKB|P0A9Z1 [details] [associations]
symbol:glnB "PII" species:83333 "Escherichia coli K-12"
[GO:0030234 "enzyme regulator activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0050790 "regulation of catalytic activity" evidence=IEA]
[GO:0006808 "regulation of nitrogen utilization" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002187 InterPro:IPR002332
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0050790
GO:GO:0006351 GO:GO:0006808 InterPro:IPR011322 SUPFAM:SSF54913
eggNOG:COG0347 Gene3D:3.30.70.120 InterPro:IPR015867 EMBL:M16778
EMBL:X58872 EMBL:S67014 EMBL:Z21843 PIR:C49940 RefSeq:NP_417048.1
RefSeq:YP_490781.1 PDB:1PIL PDB:2PII PDBsum:1PIL PDBsum:2PII
ProteinModelPortal:P0A9Z1 SMR:P0A9Z1 DIP:DIP-35005N IntAct:P0A9Z1
MINT:MINT-1235669 PaxDb:P0A9Z1 PRIDE:P0A9Z1
EnsemblBacteria:EBESCT00000004144 EnsemblBacteria:EBESCT00000004145
EnsemblBacteria:EBESCT00000004146 EnsemblBacteria:EBESCT00000014755
GeneID:12930207 GeneID:947016 KEGG:ecj:Y75_p2506 KEGG:eco:b2553
PATRIC:32120505 EchoBASE:EB0379 EcoGene:EG10384
HOGENOM:HOG000017847 KO:K04751 OMA:TIMRTAQ ProtClustDB:PRK10858
BioCyc:EcoCyc:PROTEIN-PII BioCyc:ECOL316407:JW2537-MONOMER
EvolutionaryTrace:P0A9Z1 Genevestigator:P0A9Z1 Uniprot:P0A9Z1
Length = 112
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 54/110 (49%), Positives = 80/110 (72%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>TIGR_CMR|SPO_2294 [details] [associations]
symbol:SPO_2294 "nitrogen regulatory protein P-II"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0030234 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050790 GO:GO:0006351 GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04751 OMA:TIMRTAQ RefSeq:YP_167517.1
ProteinModelPortal:Q5LR38 SMR:Q5LR38 GeneID:3196300
KEGG:sil:SPO2294 PATRIC:23377945 ProtClustDB:CLSK934321
Uniprot:Q5LR38
Length = 112
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 51/110 (46%), Positives = 80/110 (72%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL ++G++G++V +V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALQDIGVQGLSVVEVKGFGRQKGHTELYRGAEYVVD-FLPKVKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+V+ DQV+ I+ I+ A+T +IGDGKIF+ V IR+RTGE G A
Sbjct: 62 EVVLDDDQVDAAIEAIVSAAKTDKIGDGKIFVSTVEQAIRIRTGETGSDA 111
>UNIPROTKB|P64249 [details] [associations]
symbol:glnB "Nitrogen regulatory protein P-II" species:1773
"Mycobacterium tuberculosis" [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0043531 "ADP binding" evidence=IDA] [GO:0044119 "growth of
symbiont in host cell" evidence=IMP] [GO:0070207 "protein
homotrimerization" evidence=IPI] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0005886 GO:GO:0005524 GO:GO:0030234 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0044119 GO:GO:0050790 GO:GO:0043531 GO:GO:0006351
EMBL:BX842581 GO:GO:0006808 GO:GO:0070207 InterPro:IPR011322
SUPFAM:SSF54913 eggNOG:COG0347 Gene3D:3.30.70.120
InterPro:IPR015867 HOGENOM:HOG000017847 KO:K04751 PIR:G70747
RefSeq:NP_217435.1 RefSeq:NP_337499.1 RefSeq:YP_006516372.1
PDB:3BZQ PDB:3LF0 PDBsum:3BZQ PDBsum:3LF0 ProteinModelPortal:P64249
SMR:P64249 PRIDE:P64249 EnsemblBacteria:EBMYCT00000000517
EnsemblBacteria:EBMYCT00000070792 GeneID:13317712 GeneID:887756
GeneID:925288 KEGG:mtc:MT2987 KEGG:mtu:Rv2919c KEGG:mtv:RVBD_2919c
PATRIC:18128334 TubercuList:Rv2919c OMA:IRIRNDE
ProtClustDB:CLSK792161 EvolutionaryTrace:P64249 Uniprot:P64249
Length = 112
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 51/109 (46%), Positives = 80/109 (73%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ AI++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV++E
Sbjct: 4 ITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKVRIE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 63 VVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111
>TIGR_CMR|SO_3819 [details] [associations]
symbol:SO_3819 "nitrogen regulatory protein P-II"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] InterPro:IPR002187 InterPro:IPR002332
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 RefSeq:NP_719355.1 HSSP:P38504
ProteinModelPortal:Q8EAS3 GeneID:1171460 KEGG:son:SO_3819
PATRIC:23527310 OMA:LEMAIHT ProtClustDB:CLSK907359 Uniprot:Q8EAS3
Length = 112
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 51/109 (46%), Positives = 77/109 (70%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ AI++P+++ V AL +GI G+TV++VRGFG Q G TE + G+E++ D F+ K+K+E
Sbjct: 4 ITAIIKPFKIDDVREALTQLGIHGMTVTEVRGFGRQKGHTELYRGAEYAVD-FLPKMKLE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
I + + E VI+ I++ A TG++GDGKIF+ P+ VIRVRT E G A
Sbjct: 63 IAIHSELEEAVIEAIIQAAHTGKVGDGKIFVTPLEQVIRVRTAEEGVDA 111
>UNIPROTKB|Q9KUB6 [details] [associations]
symbol:VC_0606 "Nitrogen regulatory protein P-II"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR002332 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496 PROSITE:PS00638
PROSITE:PS51343 SMART:SM00938 GO:GO:0030234 GO:GO:0003824
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0050790
GO:GO:0006351 GO:GO:0006808 InterPro:IPR011322 SUPFAM:SSF54913
Gene3D:3.30.70.120 InterPro:IPR015867 KO:K04752 OMA:GELDNEA
HSSP:P05826 PIR:B82302 RefSeq:NP_230256.1 ProteinModelPortal:Q9KUB6
SMR:Q9KUB6 DNASU:2615394 GeneID:2615394 KEGG:vch:VC0606
PATRIC:20080320 ProtClustDB:CLSK793685 Uniprot:Q9KUB6
Length = 121
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 51/119 (42%), Positives = 80/119 (67%)
Query: 61 DYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSE 120
D + + + AI++P+++ V AL ++GI G+TVS+V+GFG Q G TE + G+E+
Sbjct: 3 DCFREEEMKLINAIIKPFKLDDVREALADVGIEGMTVSEVKGFGRQKGHTELYRGAEYQV 62
Query: 121 DKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
D F+ KVK+EI D V+ V++ I++ A TG+IGDGKIF+ +S +R+RTGE +A
Sbjct: 63 D-FLPKVKIEIATQSDNVDRVVEAIIKAAHTGKIGDGKIFVYDLSQAVRIRTGEMDSEA 120
>TIGR_CMR|VC_0606 [details] [associations]
symbol:VC_0606 "nitrogen regulatory protein P-II"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006808 "regulation
of nitrogen utilization" evidence=ISS] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0030234 GO:GO:0003824 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050790 GO:GO:0006351 GO:GO:0006808
InterPro:IPR011322 SUPFAM:SSF54913 Gene3D:3.30.70.120
InterPro:IPR015867 KO:K04752 OMA:GELDNEA HSSP:P05826 PIR:B82302
RefSeq:NP_230256.1 ProteinModelPortal:Q9KUB6 SMR:Q9KUB6
DNASU:2615394 GeneID:2615394 KEGG:vch:VC0606 PATRIC:20080320
ProtClustDB:CLSK793685 Uniprot:Q9KUB6
Length = 121
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 51/119 (42%), Positives = 80/119 (67%)
Query: 61 DYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSE 120
D + + + AI++P+++ V AL ++GI G+TVS+V+GFG Q G TE + G+E+
Sbjct: 3 DCFREEEMKLINAIIKPFKLDDVREALADVGIEGMTVSEVKGFGRQKGHTELYRGAEYQV 62
Query: 121 DKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
D F+ KVK+EI D V+ V++ I++ A TG+IGDGKIF+ +S +R+RTGE +A
Sbjct: 63 D-FLPKVKIEIATQSDNVDRVVEAIIKAAHTGKIGDGKIFVYDLSQAVRIRTGEMDSEA 120
>TIGR_CMR|CPS_0641 [details] [associations]
symbol:CPS_0641 "nitrogen regulatory protein P-II"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006808
"regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR002332 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496 PROSITE:PS00638
PROSITE:PS51343 SMART:SM00938 GO:GO:0030234 GO:GO:0006355
GO:GO:0050790 GO:GO:0006351 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006808 InterPro:IPR011322 SUPFAM:SSF54913 eggNOG:COG0347
Gene3D:3.30.70.120 InterPro:IPR015867 HOGENOM:HOG000017847
KO:K04752 RefSeq:YP_267391.1 ProteinModelPortal:Q488X3 SMR:Q488X3
STRING:Q488X3 GeneID:3520874 KEGG:cps:CPS_0641 PATRIC:21464609
OMA:VIEAICK BioCyc:CPSY167879:GI48-728-MONOMER Uniprot:Q488X3
Length = 112
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 48/109 (44%), Positives = 78/109 (71%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ AI++P+++ V A+ +G+ G+TVS+V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 ISAIIKPFKLDDVREAISEVGVEGITVSEVKGFGRQKGHTELYRGAEYQVD-FLPKVKIE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
I V+++ VE +++ I + A TG+IGDGKIF+ + IR+RTGE+ +A
Sbjct: 63 IAVNEELVERLVEAITKSAYTGKIGDGKIFVYNLEQAIRIRTGEQDSEA 111
>UNIPROTKB|P0AC55 [details] [associations]
symbol:glnK "GlnK" species:83333 "Escherichia coli K-12"
[GO:0030234 "enzyme regulator activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045848 "positive regulation of nitrogen utilization"
evidence=IMP] [GO:0050790 "regulation of catalytic activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0030234 GO:GO:0006355 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0050790
GO:GO:0006351 EMBL:U82664 GO:GO:0006808 EMBL:U40429 PDB:2NS1
PDB:2NUU PDBsum:2NS1 PDBsum:2NUU InterPro:IPR011322 SUPFAM:SSF54913
eggNOG:COG0347 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 EMBL:S79842 PIR:B64775 RefSeq:NP_414984.1
RefSeq:YP_488742.1 PDB:1GNK PDB:2GNK PDBsum:1GNK PDBsum:2GNK
ProteinModelPortal:P0AC55 SMR:P0AC55 DIP:DIP-35006N IntAct:P0AC55
MINT:MINT-1309225 SWISS-2DPAGE:P0AC55 PRIDE:P0AC55
EnsemblBacteria:EBESCT00000000557 EnsemblBacteria:EBESCT00000015336
GeneID:12934155 GeneID:945087 KEGG:ecj:Y75_p0438 KEGG:eco:b0450
PATRIC:32116055 EchoBASE:EB2108 EcoGene:EG12191 KO:K04752
OMA:RTGERNG ProtClustDB:PRK10665 BioCyc:EcoCyc:PROTEIN-PII2
BioCyc:ECOL316407:JW0440-MONOMER BioCyc:MetaCyc:PROTEIN-PII2
EvolutionaryTrace:P0AC55 Genevestigator:P0AC55 Uniprot:P0AC55
Length = 112
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 49/109 (44%), Positives = 80/109 (73%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V I++P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK++
Sbjct: 4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKID 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 63 VAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>TIGR_CMR|CHY_0072 [details] [associations]
symbol:CHY_0072 "nitrogen regulatory protein P-II"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0050790
GO:GO:0006351 GO:GO:0006808 InterPro:IPR011322 SUPFAM:SSF54913
eggNOG:COG0347 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04751 OMA:IRIRNDE RefSeq:YP_358944.1
ProteinModelPortal:Q3AFZ0 SMR:Q3AFZ0 STRING:Q3AFZ0 GeneID:3726992
KEGG:chy:CHY_0072 PATRIC:21273341 BioCyc:CHYD246194:GJCN-72-MONOMER
Uniprot:Q3AFZ0
Length = 120
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 54/110 (49%), Positives = 74/110 (67%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EA++RP ++ +V AL +GI G+TV++V G G Q G E + G E+ E + KVK+
Sbjct: 3 KIEALIRPQKLGEVKEALNKLGISGMTVTEVVGCGRQKGQKEIYRGIEY-EINLLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIV ++VE +I I E ARTG IGDGKIF+ V D +R+RTGERG A
Sbjct: 62 EIVTVDEKVEEIIKIISESARTGAIGDGKIFISEVLDAVRIRTGERGTAA 111
>TIGR_CMR|SPO_3724 [details] [associations]
symbol:SPO_3724 "nitrogen regulatory protein P-II"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR002187
InterPro:IPR002332 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00496 PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938
GO:GO:0030234 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050790 GO:GO:0006351 GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04751 RefSeq:YP_168918.1
ProteinModelPortal:Q5LM40 SMR:Q5LM40 GeneID:3196220
KEGG:sil:SPO3724 PATRIC:23380941 OMA:IATIKPF ProtClustDB:CLSK934254
Uniprot:Q5LM40
Length = 112
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 48/107 (44%), Positives = 74/107 (69%)
Query: 73 AILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 132
A ++P+++ +V AL GIRG+ V++++GFG Q G TE + G+E++ + FV K+K+E+V
Sbjct: 6 ATIKPFKLDEVREALTEAGIRGMMVTEIKGFGTQSGHTEIYRGAEYTVN-FVPKIKLELV 64
Query: 133 VSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
V+ E + D I ARTG+IGDGKIF++ V +RVRTGE + A
Sbjct: 65 VADQIAEQIADTIARTARTGKIGDGKIFVLDVEQALRVRTGETDDDA 111
>TIGR_CMR|SO_0761 [details] [associations]
symbol:SO_0761 "nitrogen regulatory protein P-II 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] InterPro:IPR002187 InterPro:IPR002332
InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00496
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 Gene3D:3.30.70.120 InterPro:IPR015867
HOGENOM:HOG000017847 KO:K04752 HSSP:P38504 RefSeq:NP_716392.1
ProteinModelPortal:Q8EIS4 SMR:Q8EIS4 GeneID:1168615
KEGG:son:SO_0761 PATRIC:23521193 OMA:GELDNEA ProtClustDB:CLSK905924
Uniprot:Q8EIS4
Length = 112
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 47/109 (43%), Positives = 74/109 (67%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V AI++P+++ V A+ +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 VSAIIKPFKLDDVREAIAGIGIEGMTVTEVKGFGRQKGHTELYRGAEYQVD-FLPKVKLE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
I + ++ +I+ I A TG+IGDGKIF++ + IR+RTGE +A
Sbjct: 63 IATKAENLDMLIEAITTAAHTGKIGDGKIFVIDLEHAIRIRTGELDTEA 111
>TIGR_CMR|DET_1124 [details] [associations]
symbol:DET_1124 "nitrogen regulatory protein P-II"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006808
"regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 eggNOG:COG0347 Gene3D:3.30.70.120
InterPro:IPR015867 HOGENOM:HOG000017847 KO:K04751
RefSeq:YP_181839.1 ProteinModelPortal:Q3Z7G0 SMR:Q3Z7G0
STRING:Q3Z7G0 GeneID:3229552 KEGG:det:DET1124 PATRIC:21609279
OMA:KVVEAIM ProtClustDB:CLSK837102
BioCyc:DETH243164:GJNF-1125-MONOMER Uniprot:Q3Z7G0
Length = 112
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 47/110 (42%), Positives = 71/110 (64%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI+R R++ V AL G G+TV++V G G Q G + E+ + F+ K+K+
Sbjct: 3 KIEAIIREERLEPVRKALELAGFAGLTVTEVSGRGKQKGVPLQWRVGEYRVE-FLPKLKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E++ D + +D I++ ARTG IGDGKIF++PV V+R+RTGE G +A
Sbjct: 62 EMICHDDDCQVAVDAIVKAARTGRIGDGKIFIMPVEQVVRIRTGETGSEA 111
>TIGR_CMR|GSU_2134 [details] [associations]
symbol:GSU_2134 "nitrogen regulatory protein P-II,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0019740
"nitrogen utilization" evidence=ISS] [GO:0030234 "enzyme regulator
activity" evidence=ISS] InterPro:IPR002187 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00638 PROSITE:PS51343
SMART:SM00938 GO:GO:0030234 GO:GO:0006355 GO:GO:0050790
GO:GO:0006351 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006808
InterPro:IPR011322 SUPFAM:SSF54913 Gene3D:3.30.70.120
InterPro:IPR015867 HOGENOM:HOG000017847 KO:K04751
RefSeq:NP_953183.1 ProteinModelPortal:Q74BA7 GeneID:2685942
KEGG:gsu:GSU2134 PATRIC:22027121 OMA:CADARVE ProtClustDB:CLSK740863
BioCyc:GSUL243231:GH27-2112-MONOMER Uniprot:Q74BA7
Length = 113
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 43/111 (38%), Positives = 74/111 (66%)
Query: 70 KVEAILRPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVK 128
+++AI+RP +++ V+ L + G+ GVTVS+++GFG +G + + +F+ +VK
Sbjct: 3 EIKAIIRPGKLRDVAEELHAIDGMPGVTVSEIKGFG-KGKARNATDKILYEMVEFIPRVK 61
Query: 129 MEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+E+VV+ D V+ V++ I + A TG GDGKIF+ + DV+++RT ERG A
Sbjct: 62 LEVVVADDMVDDVVNVIQKYAHTGNTGDGKIFISTIDDVVKIRTNERGSSA 112
>TIGR_CMR|GSU_0831 [details] [associations]
symbol:GSU_0831 "nitrogen regulatory protein P-II,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0019740
"nitrogen utilization" evidence=ISS] [GO:0030234 "enzyme regulator
activity" evidence=ISS] InterPro:IPR002187 InterPro:IPR017918
Pfam:PF00543 PRINTS:PR00340 PROSITE:PS00638 PROSITE:PS51343
SMART:SM00938 GO:GO:0030234 GO:GO:0006355 GO:GO:0050790
GO:GO:0006351 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006808
InterPro:IPR011322 SUPFAM:SSF54913 Gene3D:3.30.70.120
InterPro:IPR015867 HOGENOM:HOG000017847 KO:K04751
ProtClustDB:CLSK740863 RefSeq:NP_951888.1 ProteinModelPortal:Q74EX8
GeneID:2687172 KEGG:gsu:GSU0831 PATRIC:22024427 OMA:GAGKIWV
BioCyc:GSUL243231:GH27-803-MONOMER Uniprot:Q74EX8
Length = 113
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 41/111 (36%), Positives = 69/111 (62%)
Query: 70 KVEAILRPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVK 128
+++AI+RP ++ +V+ L + G+ GVTVS+++GFG + + + + V +++
Sbjct: 3 EIKAIIRPAKLLEVTEELHAIDGLPGVTVSEIKGFG-KSRAKNAQDKIVYEMVELVPRIQ 61
Query: 129 MEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+E+VV VE V+ I + A TG GDGKIF+ V D+I++RT ERG A
Sbjct: 62 LEVVVDDGMVEEVVAVIRKHAHTGTAGDGKIFVSTVDDIIKIRTNERGRDA 112
>TIGR_CMR|DET_1157 [details] [associations]
symbol:DET_1157 "nitrogen regulatory protein P-II"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006808
"regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 Pfam:PF00543 PRINTS:PR00340 PROSITE:PS51343
SMART:SM00938 GO:GO:0030234 GO:GO:0050790 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 eggNOG:COG0347 Gene3D:3.30.70.120
InterPro:IPR015867 HOGENOM:HOG000017847 RefSeq:YP_181871.1
ProteinModelPortal:Q3Z7C8 STRING:Q3Z7C8 GeneID:3229587
KEGG:det:DET1157 PATRIC:21609349 KO:K02589 OMA:RPEKVDD
BioCyc:DETH243164:GJNF-1158-MONOMER Uniprot:Q3Z7C8
Length = 108
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 44/106 (41%), Positives = 56/106 (52%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V AI+RP +V V + L+ G VT DV G G Q G R G + E + KV +
Sbjct: 4 VRAIVRPEKVDDVMAELMYAGFPAVTKIDVFGRGKQRGI--RAGSVSYDE---LPKVLLL 58
Query: 131 IVVSKDQVEGVIDKIMEEARTGE---IGDGKIFLVPVSDVIRVRTG 173
V+ E VID IM+ ARTGE GDGKIF+ PV + + TG
Sbjct: 59 TVIDDKDKEFVIDTIMKTARTGEKGNFGDGKIFISPVEEAYTISTG 104
>TIGR_CMR|DET_1156 [details] [associations]
symbol:DET_1156 "nitrogen regulatory protein P-II"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006808
"regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR002187 InterPro:IPR017918 Pfam:PF00543 PRINTS:PR00340
PROSITE:PS00638 PROSITE:PS51343 SMART:SM00938 GO:GO:0030234
GO:GO:0006355 GO:GO:0050790 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0006808 InterPro:IPR011322
SUPFAM:SSF54913 eggNOG:COG0347 Gene3D:3.30.70.120
InterPro:IPR015867 HOGENOM:HOG000017847 RefSeq:YP_181870.1
ProteinModelPortal:Q3Z7C9 STRING:Q3Z7C9 GeneID:3229588
KEGG:det:DET1156 PATRIC:21609347 KO:K02590 OMA:GHEEAIS
BioCyc:DETH243164:GJNF-1157-MONOMER Uniprot:Q3Z7C9
Length = 130
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 44/122 (36%), Positives = 66/122 (54%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRG-----------FGAQGGSTERHGGSEF 118
+V AI+R ++ AL++ G +T+ G GA+GG E S+
Sbjct: 3 EVMAIIRFNKINITKRALVDAGFASITMLKTMGRGKGNVDYLLLAGAEGGHEEAI--SQL 60
Query: 119 SED-KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGE 177
K V K + +VV DQV+ V++ ++E RT GDGKIF++PV + +R+RTGERGE
Sbjct: 61 GPSLKLVPKRLITLVVPDDQVKTVVNTVIEVNRTENHGDGKIFVMPVLEAVRLRTGERGE 120
Query: 178 KA 179
A
Sbjct: 121 DA 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 193 183 0.00076 110 3 11 22 0.46 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 571 (61 KB)
Total size of DFA: 135 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.50u 0.10s 16.60t Elapsed: 00:00:01
Total cpu time: 16.50u 0.10s 16.60t Elapsed: 00:00:01
Start: Mon May 20 23:14:00 2013 End: Mon May 20 23:14:01 2013