BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029477
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZST4|GLNB_ARATH Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana
GN=GLB1 PE=1 SV=1
Length = 196
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/188 (70%), Positives = 148/188 (78%), Gaps = 5/188 (2%)
Query: 2 AAIANPASFTPLNFSSHLKELPLVNFGSVRPSLRISRLSRLK-CTRNVSN----LHVIRA 56
A++ P S T L F S K + + S+ R SR S L T++ SN L V+ A
Sbjct: 3 ASMTKPISITSLGFYSDRKNIAFSDCISICSGFRHSRPSCLDLVTKSPSNNSRVLPVVSA 62
Query: 57 QSSPDYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGS 116
Q S DYIPDSKFYKVEAI+RPWR+QQVSSALL +GIRGVTVSDVRGFGAQGGSTERHGGS
Sbjct: 63 QISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGS 122
Query: 117 EFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
EFSEDKFVAKVKMEIVV KDQVE VI+ I+E ARTGEIGDGKIF++PVSDVIRVRTGERG
Sbjct: 123 EFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERG 182
Query: 177 EKAERMAG 184
EKAE+M G
Sbjct: 183 EKAEKMTG 190
>sp|Q6AUR2|GLNB_ORYSJ Nitrogen regulatory protein P-II homolog OS=Oryza sativa subsp.
japonica GN=GLB PE=2 SV=1
Length = 212
Score = 220 bits (560), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 122/133 (91%), Gaps = 1/133 (0%)
Query: 62 YIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED 121
Y P+S+FYKVEAILRPWRV VSS LL MGIRGVTVSDVRGFGAQGGSTERH GSEF+ED
Sbjct: 77 YQPESEFYKVEAILRPWRVPYVSSGLLQMGIRGVTVSDVRGFGAQGGSTERHEGSEFAED 136
Query: 122 KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAER 181
F+ KVKMEIVVSKDQVE V+DKI+E+ARTGEIGDGKIFL+PVSDVIR+RTGERGE+AER
Sbjct: 137 TFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVSDVIRIRTGERGERAER 196
Query: 182 MAGGWSD-ISSAV 193
MAGG +D +SSA+
Sbjct: 197 MAGGLADKLSSAM 209
>sp|O30794|GLNB_NOSP7 Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC
29133 / PCC 73102) GN=glnB PE=3 SV=1
Length = 112
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 88/110 (80%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV +QV+ V+DKI+ ARTGEIGDGKIF+ PV VIR+RTGE+ +A
Sbjct: 62 EIVVDDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111
>sp|Q47894|GLNB_FREDI Nitrogen regulatory protein P-II OS=Fremyella diplosiphon GN=glnB
PE=3 SV=1
Length = 112
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 88/110 (80%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKV 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV +QV+ V+DKI+ ARTGEIGDGKIF+ PV V+R+RTGE+ +A
Sbjct: 62 EIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVVRIRTGEKNTEA 111
>sp|P0A3F5|GLNB_SYNP6 Nitrogen regulatory protein P-II OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=glnB PE=1 SV=1
Length = 112
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 62 EIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>sp|P0A3F4|GLNB_SYNE7 Nitrogen regulatory protein P-II OS=Synechococcus elongatus (strain
PCC 7942) GN=glnB PE=1 SV=1
Length = 112
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 62 EIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>sp|Q55247|GLNB_SYNY3 Nitrogen regulatory protein P-II OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=glnB PE=1 SV=1
Length = 112
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 88/110 (80%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI+RP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+
Sbjct: 3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV + QV+ V+DK++ ARTGEIGDGKIF+ PV V+R+RTGE+ +A
Sbjct: 62 EIVVDEGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111
>sp|O66513|GLNB_AQUAE Nitrogen regulatory protein P-II OS=Aquifex aeolicus (strain VF5)
GN=glnB PE=1 SV=1
Length = 112
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 88/110 (80%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL+ +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+VV + VE V++ I++ A+TG +GDGKIF++PV DVIR+RTGERGE+A
Sbjct: 62 EVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111
>sp|Q9CJK1|GLNB_PASMU Nitrogen regulatory protein P-II OS=Pasteurella multocida (strain
Pm70) GN=glnB PE=3 SV=1
Length = 112
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ V +L ++GI G+TV++VRGFG Q G TE + G+E+ D F+ KVKM
Sbjct: 3 KIEAIIKPFKLDDVRESLSDVGITGMTVTEVRGFGRQKGHTELYRGAEYMVD-FLPKVKM 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV+ +QV+ I+ IME A+TG+IGDGKIF+ V VIR+RTGE E A
Sbjct: 62 EIVVTDEQVDQCIEAIMETAQTGKIGDGKIFVYDVERVIRIRTGEENEDA 111
>sp|P21193|GLNB_AZOBR Nitrogen regulatory protein P-II OS=Azospirillum brasilense GN=glnB
PE=3 SV=1
Length = 112
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL +GI+G+TV++ +GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALHEVGIKGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
E+V+ VE I+ I + A TG IGDGKIF+ PV +V+R+RTGE+G
Sbjct: 62 EVVMEDSLVERAIEAIQQAAHTGRIGDGKIFVTPVEEVVRIRTGEKG 108
>sp|P11671|GLNB_KLEOX Nitrogen regulatory protein P-II OS=Klebsiella oxytoca GN=glnB PE=1
SV=1
Length = 112
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV+ D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVTDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|Q60381|Y059_METJA Uncharacterized nitrogen regulatory PII-like protein MJ0059
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0059
PE=1 SV=1
Length = 112
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI+RP +++ V AL + G G+TVS+V+G G QGG ER+ G E+ D + KVK+
Sbjct: 3 KVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+VV ++ V+ VID I E ARTG GDGKIF++PV V+RVRT E G++A
Sbjct: 62 ELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEA 111
>sp|P43519|GLNB_RHOSH Nitrogen regulatory protein P-II OS=Rhodobacter sphaeroides GN=glnB
PE=3 SV=1
Length = 112
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL G++G++V++V+GFG Q G TE + G+ + D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALQAAGVQGLSVTEVKGFGRQKGHTELYRGAAYVVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+V++ D VE ++ I+ +RT +IGDGKIF+ PV IR+RTGE GE A
Sbjct: 62 EVVLADDMVEAAVEAIVSASRTDKIGDGKIFISPVEQAIRIRTGETGEDA 111
>sp|Q98N18|GLNB_RHILO Nitrogen regulatory protein P-II OS=Rhizobium loti (strain
MAFF303099) GN=glnB PE=3 SV=1
Length = 112
Score = 106 bits (265), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+V+ D VEG I+ I + A+TG IGDGKIF+ + +V+R+RTGE G A
Sbjct: 62 EVVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETGMDA 111
>sp|P0A9Z6|GLNB_SHIFL Nitrogen regulatory protein P-II 1 OS=Shigella flexneri GN=glnB
PE=3 SV=1
Length = 112
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z4|GLNB_SALTY Nitrogen regulatory protein P-II 1 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=glnB PE=3 SV=1
Length = 112
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z5|GLNB_SALTI Nitrogen regulatory protein P-II 1 OS=Salmonella typhi GN=glnB PE=3
SV=1
Length = 112
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z1|GLNB_ECOLI Nitrogen regulatory protein P-II 1 OS=Escherichia coli (strain K12)
GN=glnB PE=1 SV=1
Length = 112
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z2|GLNB_ECOL6 Nitrogen regulatory protein P-II 1 OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=glnB PE=3 SV=1
Length = 112
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z3|GLNB_ECO57 Nitrogen regulatory protein P-II 1 OS=Escherichia coli O157:H7
GN=glnB PE=3 SV=1
Length = 112
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K++AI++P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 62 EIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|Q52905|GLNB_RHIME Nitrogen regulatory protein P-II OS=Rhizobium meliloti (strain
1021) GN=glnB PE=3 SV=1
Length = 112
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL +G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKV 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
E+V++ + E VI+ I A+TG IGDGKIF+ V +VIR+RTGE G
Sbjct: 62 EVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNVEEVIRIRTGETG 108
>sp|Q58740|Y1344_METJA Uncharacterized nitrogen regulatory PII-like protein MJ1344
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1344
PE=3 SV=1
Length = 112
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI+RP +++ V AL + G G+TVS+V+G G QGG ER+ G E+ D + KVK+
Sbjct: 3 KVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
E+VV ++ V+ VID I E ARTG GDGKIF++PV V+RVRT E G
Sbjct: 62 ELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEG 108
>sp|Q53044|GLNB_RHORT Nitrogen regulatory protein P-II OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnB PE=3 SV=1
Length = 112
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL +G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALHEIGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
E+V+ VE I+ I + A+TG IGDGKIF+ + + IR+RTGERG
Sbjct: 62 ELVIEDALVERAIEAIQQAAQTGRIGDGKIFVYAIEEAIRIRTGERG 108
>sp|P43795|GLNB_HAEIN Nitrogen regulatory protein P-II OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnB PE=3 SV=1
Length = 112
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 80/110 (72%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EA+++P+++ V +L ++GI G+T+++VRGFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAMIKPFKLDDVRESLSDIGISGMTITEVRGFGRQKGHTELYRGAEYMVD-FLPKVKL 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+VV + V+ I+ I+E A+TG+IGDGKIF+ V IR+RTGE E A
Sbjct: 62 EVVVPDELVDQCIEAIIETAQTGKIGDGKIFVYHVERAIRIRTGEENEDA 111
>sp|P64249|GLNB_MYCTU Nitrogen regulatory protein P-II OS=Mycobacterium tuberculosis
GN=glnB PE=1 SV=1
Length = 112
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ AI++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV++E
Sbjct: 4 ITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKVRIE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 63 VVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111
>sp|P64250|GLNB_MYCBO Nitrogen regulatory protein P-II OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=glnB PE=3 SV=1
Length = 112
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ AI++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV++E
Sbjct: 4 ITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKVRIE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 63 VVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111
>sp|P14179|GLNB_BRAJA Nitrogen regulatory protein P-II OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnB PE=3 SV=2
Length = 112
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V AL +G++G+TV++ +GFG Q G E + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
EIV+ D VE ID I A+TG IGDGKIF+ + + IR+RTGE G
Sbjct: 62 EIVIGDDLVERAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESG 108
>sp|P0AC58|GLNK_SHIFL Nitrogen regulatory protein P-II 2 OS=Shigella flexneri GN=glnK
PE=3 SV=1
Length = 112
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V I++P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK++
Sbjct: 4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKID 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 63 VAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P0AC55|GLNK_ECOLI Nitrogen regulatory protein P-II 2 OS=Escherichia coli (strain K12)
GN=glnK PE=1 SV=1
Length = 112
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V I++P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK++
Sbjct: 4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKID 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 63 VAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P0AC56|GLNK_ECOL6 Nitrogen regulatory protein P-II 2 OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=glnK PE=3 SV=1
Length = 112
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V I++P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK++
Sbjct: 4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKID 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 63 VAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P0AC57|GLNK_ECO57 Nitrogen regulatory protein P-II 2 OS=Escherichia coli O157:H7
GN=glnK PE=3 SV=1
Length = 112
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V I++P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK++
Sbjct: 4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKID 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 63 VAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P13556|GLNB_RHOCA Nitrogen regulatory protein P-II OS=Rhodobacter capsulatus GN=glnB
PE=3 SV=1
Length = 112
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
KVEAI++P+++ +V AL GI+G++V +V+GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KVEAIIKPFKLDEVKEALQEAGIQGLSVIEVKGFGRQKGHTELYRGAEYVVD-FLPKVKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
E+V+ + V+ I+ I+ ART +IGDGKIF+ + IR+RTGE GE A
Sbjct: 62 EMVLPDEMVDIAIEAIVGAARTEKIGDGKIFVSSIEQAIRIRTGETGEDA 111
>sp|Q9TM37|GLNB_CYACA Nitrogen regulatory protein P-II OS=Cyanidium caldarium GN=glnB
PE=3 SV=1
Length = 113
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKV 127
F K+EAI+RP+++++V L+ G+ G+TV++V G G Q G ER G E+ + + + KV
Sbjct: 2 FSKLEAIIRPFKLEEVKVRLMTFGVPGITVTNVMGCGKQIGGIERSKGVEY-DSELIEKV 60
Query: 128 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGER 175
K+EIVV + ++ +I+ I+ TGEIGDGKIF+ PVS VIR+RT ++
Sbjct: 61 KIEIVVMNEHIDELIEIIINAVWTGEIGDGKIFVSPVSSVIRIRTQDK 108
>sp|O26758|GLNB1_METTH Nitrogen regulatory protein P-II 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_662 PE=3 SV=1
Length = 115
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+ AI+R +++ V AL MGI G+TVSDV+G G Q G E + G ++ D + KV++
Sbjct: 6 KITAIIRREKLEDVKDALELMGIHGMTVSDVKGRGQQMGIRESYRGMDYCVD-LLPKVQL 64
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
EIVV + +E ++ I E ARTG++GDGKIF+ V DV+R+RTGE G A
Sbjct: 65 EIVVDSEDLERTVEAISENARTGDVGDGKIFVTDVIDVVRIRTGEHGRDA 114
>sp|P09827|GLNB_RHILV Nitrogen regulatory protein P-II OS=Rhizobium leguminosarum bv.
viciae GN=glnB PE=3 SV=1
Length = 111
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI++P+++ +V S +G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+
Sbjct: 3 KIEAIIKPFKLDEVRSPS-GVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKV 60
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
E+V++ + E VI+ I + A+TG IGDGKIF+ V +VIR+RTGE G
Sbjct: 61 EVVLADENAEAVIEAIRKAAQTGRIGDGKIFVSNVEEVIRIRTGETG 107
>sp|O26760|GLNB2_METTH Nitrogen regulatory protein P-II 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_664 PE=3 SV=1
Length = 115
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 73 AILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 132
AI+RP ++++V +AL G G+TV++VRG G Q G TE + G ++ D + K K+EIV
Sbjct: 9 AIIRPEKLEEVKNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRID-LLPKTKIEIV 67
Query: 133 VSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
V+ + V+ V++ I++ A+TG+IGDGKIF+ V +V+R+RTGE G+KA
Sbjct: 68 VNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKA 114
>sp|O54053|GLNB_RHIEC Nitrogen regulatory protein P-II OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=glnB PE=3 SV=3
Length = 112
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
V AI++P+++ +V AL +GI+G+TV++V+G+G Q G TE + G+E++ F+ K+K+E
Sbjct: 4 VMAIIKPFKLDEVREALTAIGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVS-FLPKLKIE 62
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
I V+ + V+ ++ I A+TG+IGDGKIF+ + +R+RTGE +A
Sbjct: 63 IAVASELVDRAVEAIAASAKTGQIGDGKIFVYSIDHAVRIRTGETDSEA 111
>sp|P51254|GLNB_PORPU Nitrogen regulatory protein P-II OS=Porphyra purpurea GN=glnB PE=3
SV=1
Length = 112
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI+RP+++ +V AL+ GI G+TV V GFG Q G TER+ GSE+S D
Sbjct: 3 KIEAIIRPFKLNEVKLALVKGGIGGMTVVKVSGFGRQKGQTERYKGSEYSIDIIDKIKIE 62
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 174
+VS D+V + + I++ A+TGEIGDGKIF+ V VIR+RT +
Sbjct: 63 I-IVSDDKVNSITEIIIKTAKTGEIGDGKIFISDVEQVIRIRTND 106
>sp|Q1XDN3|GLNB_PORYE Nitrogen regulatory protein P-II OS=Porphyra yezoensis GN=glnB PE=3
SV=1
Length = 112
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 129
K+EAI+RP+++ +V AL+ GI G+TV V GFG Q G TER+ GSE+S D + K+K+
Sbjct: 3 KIEAIIRPFKLNEVKLALVKEGIGGMTVIKVSGFGRQKGQTERYKGSEYSIDI-IDKIKI 61
Query: 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 174
EI++S D+VE +++ I++ ++TGEIGDGKIF+ + VIR+RT +
Sbjct: 62 EIIISDDKVEKIVETIIKASKTGEIGDGKIFISSIERVIRIRTND 106
>sp|Q07428|NRGB_BACSU Nitrogen regulatory PII-like protein OS=Bacillus subtilis (strain
168) GN=nrgB PE=2 SV=1
Length = 116
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAK 126
+ +KVE + RP +++ L +G+ +T S+V G G Q TE + G + E +
Sbjct: 4 QMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAHTELYRGVKI-ESNVYER 62
Query: 127 VKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+K+EIVVSK V+ V + +TG GDGKIF+ +S+ I +RTGE G +A
Sbjct: 63 LKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEA 115
>sp|P0CW47|GLNB2_METMP Nitrogen fixation nifHD region glnB-like protein 2 OS=Methanococcus
maripaludis (strain S2 / LL) GN=glnBII PE=3 SV=1
Length = 121
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 73 AILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGG--------SEFSEDKFV 124
AI+RP ++ Q + L +G +T + V G G Q G ++ + +++
Sbjct: 6 AIIRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELGFEVDNKELLNQPGDMRYI 65
Query: 125 AKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
K + ++V + V++ IM+ ++G+ GDGKIF+ P+ D+I VRT ERGE A
Sbjct: 66 PKTMLTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAA 120
>sp|P0CW46|GLNB2_METMI Nitrogen fixation nifHD region glnB-like protein 2 OS=Methanococcus
maripaludis GN=glnBII PE=3 SV=1
Length = 121
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 73 AILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGG--------SEFSEDKFV 124
AI+RP ++ Q + L +G +T + V G G Q G ++ + +++
Sbjct: 6 AIIRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELGFEVDNKELLNQPGDMRYI 65
Query: 125 AKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
K + ++V + V++ IM+ ++G+ GDGKIF+ P+ D+I VRT ERGE A
Sbjct: 66 PKTMLTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAA 120
>sp|P51604|GLNB2_METIV Nitrogen fixation nifHD region GlnB-like protein 2
OS=Methanobacterium ivanovii GN=glnBB PE=3 SV=1
Length = 122
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 73 AILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQ----GGSTERHGGSEFSED----KFV 124
AI+RP ++ + L +G +T + V G G Q G T + E+ +++
Sbjct: 6 AIIRPNKINRTKEVLDALGFSSMTANAVFGRGRQKAIVGEVTFAIQNKDLREEEGSMRYI 65
Query: 125 AKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
K + +VV + V++ IM+ +TG+IGDGKIF+ P+ D +RVRT E GE A
Sbjct: 66 PKRMISLVVPDEDASLVVESIMKVNKTGQIGDGKIFVCPIEDAVRVRTKESGEDA 120
>sp|P54806|GLNB4_METBA Nitrogen fixation nifHD2 region GlnB-like protein 2
OS=Methanosarcina barkeri PE=3 SV=1
Length = 125
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDK------- 122
++ AI+R + Q+ LL G T+ V G G Q G +K
Sbjct: 3 EITAIIRMNKAQRTKDVLLECGFPSFTIRRVMGRGKQRGLCHEFNPPLPDPEKEAETCIR 62
Query: 123 FVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGE 177
F+ K IVV + V V+ KI+E +TG GDGKIF+ V++ IR+RTGE GE
Sbjct: 63 FIPKRMFTIVVDDENVSEVVQKIIEVNQTGNAGDGKIFVSDVTEAIRIRTGESGE 117
>sp|Q50787|GLNB2_METTM Nitrogen fixation nifHD region GlnB-like protein 2
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=glnBB PE=3
SV=1
Length = 121
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTER----HGGSEFSE----D 121
+V AI+RP +++ L ++G + V G G Q + E E
Sbjct: 3 EVIAIIRPKNMKKTRDVLESLGFPSFNATRVLGRGKQRAIIDEVTIPSPSPEIDEVRGTM 62
Query: 122 KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
+++ K ++I V V+ V++ IM+ TG+IGDGKIF+ PV D +R+RTG+RG +A
Sbjct: 63 RYIPKRMIQITVEDPDVQLVVEAIMKVNHTGKIGDGKIFVCPVDDAMRIRTGDRGTEA 120
>sp|P54809|GLNB2_METBA Nitrogen fixation nifHD1 region GlnB-like protein 2
OS=Methanosarcina barkeri GN=glnBB PE=3 SV=1
Length = 123
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGST--------ERHGGSEFSED 121
+V A++RP ++ AL +G R +T V G G Q G + + +S
Sbjct: 3 EVTAVVRPNKMSVTKDALDKIGYRRMTAIPVLGKGKQRGISGELNFYIQPKLLAKRYSTG 62
Query: 122 -KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 179
K++ K + IVV+ + V+ VI I+ +T +IGDGKIF+ + +VIR+RTGE+GE A
Sbjct: 63 MKYIPKRLLSIVVNDEDVDQVIKTIIGVNQTAQIGDGKIFVESIDEVIRIRTGEKGELA 121
>sp|Q50786|GLNB1_METTM Nitrogen fixation nifHD region GlnB-like protein 1
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=glnBA PE=3
SV=2
Length = 105
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ AI+RP + ++V+ AL + G +T DV G G Q G R + E + K M
Sbjct: 4 IRAIIRPEKSEEVADALDDAGFPALTKIDVIGRGKQKGI--RFDEIYYDE---IPKTMML 58
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
IVV E V+ I E TG+IGDGKIF+ PV + VRT E G
Sbjct: 59 IVVDDADAERVVLVISESGYTGKIGDGKIFISPVENAYTVRTREEG 104
>sp|P25770|GLNB2_METTL Nitrogen fixation nifHD region GlnB-like protein 2 OS=Methanococcus
thermolithotrophicus GN=glnBB PE=3 SV=1
Length = 128
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTE-------------RHGGS 116
+V AI+RP V + AL +G VT+++ G G Q G G
Sbjct: 3 EVIAIIRPNTVSKTVKALDVVGFPAVTMAECFGRGKQKGYFSANLPEIVDIQKIIEEGEK 62
Query: 117 EFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
E K++ K + IVV V V+ I + RTG GDG+IF++PV + IRVRTGE G
Sbjct: 63 EGRFIKYIPKRLISIVVDDADVPLVVGIISKVNRTGSFGDGRIFVLPVEEAIRVRTGETG 122
Query: 177 EKA 179
E A
Sbjct: 123 EIA 125
>sp|P25771|GLNB1_METTL Nitrogen fixation nifHD region GlnB-like protein 1 OS=Methanococcus
thermolithotrophicus GN=glnBA PE=3 SV=1
Length = 105
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
++AI+RP +V + +L N G T + G G QGG G F ++ + K +
Sbjct: 4 IKAIVRPDKVDDIVDSLENAGYPAFTKINSVGRGKQGG---LKVGEIFYDE--LPKTILL 58
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 176
I V+ D+V+ V+ I A TG GDGKIF+ P+++ +RTGE G
Sbjct: 59 IAVNDDEVDEVVGLIKSSASTGNFGDGKIFIQPITEAYTIRTGETG 104
>sp|P0CW45|GLNB1_METMP Nitrogen fixation nifHD region glnB-like protein 1 OS=Methanococcus
maripaludis (strain S2 / LL) GN=glnBI PE=3 SV=1
Length = 105
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 130
+ A++RP + ++V AL G +T DV G G Q G + + E + K +
Sbjct: 4 IRAVVRPSKAEEVVDALAESGCVALTKMDVIGRGKQKGI--KIDQIYYDE---LPKTMLM 58
Query: 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRT 172
+VV D E VI+ I + A TG GDGKIF+ PV + VRT
Sbjct: 59 LVVEDDAAENVIELITKTAYTGSFGDGKIFVSPVDEAYTVRT 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,408,499
Number of Sequences: 539616
Number of extensions: 2728270
Number of successful extensions: 6984
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6879
Number of HSP's gapped (non-prelim): 86
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)