Query 029477
Match_columns 193
No_of_seqs 123 out of 1127
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 13:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0347 GlnK Nitrogen regulato 100.0 6.8E-39 1.5E-43 248.0 11.2 112 68-180 1-112 (112)
2 PRK10858 nitrogen regulatory p 100.0 2.1E-38 4.5E-43 245.4 11.4 112 68-180 1-112 (112)
3 PRK10665 nitrogen regulatory p 100.0 2.4E-38 5.3E-43 245.0 11.2 112 68-180 1-112 (112)
4 PF00543 P-II: Nitrogen regula 100.0 2.9E-31 6.3E-36 200.2 12.3 102 71-173 1-102 (102)
5 PF06153 DUF970: Protein of un 99.2 8.3E-11 1.8E-15 91.2 7.4 85 68-170 1-109 (109)
6 COG3870 Uncharacterized protei 98.8 2E-08 4.3E-13 77.0 8.4 85 68-170 1-109 (109)
7 PF11582 DUF3240: Protein of u 98.6 7E-07 1.5E-11 68.1 9.8 98 65-170 1-101 (102)
8 COG3323 Uncharacterized protei 98.3 2.8E-06 6.2E-11 65.9 7.8 82 66-148 3-91 (109)
9 PF02641 DUF190: Uncharacteriz 97.8 0.00014 3E-09 55.1 8.3 90 67-165 2-99 (101)
10 COG4075 Uncharacterized conser 97.1 0.0053 1.2E-07 47.3 9.1 94 67-168 3-106 (110)
11 COG1993 PII-like signaling pro 96.6 0.014 3E-07 45.5 7.8 90 66-165 4-102 (109)
12 PF10126 Nit_Regul_Hom: Unchar 96.3 0.039 8.4E-07 43.0 8.7 91 69-167 5-105 (110)
13 TIGR00341 conserved hypothetic 94.7 0.17 3.6E-06 46.2 8.3 82 66-169 1-83 (325)
14 PF08029 HisG_C: HisG, C-termi 93.8 0.23 5.1E-06 36.0 6.0 38 64-101 36-73 (75)
15 PRK04164 hypothetical protein; 93.6 0.67 1.4E-05 38.8 9.2 74 70-169 94-167 (181)
16 TIGR03455 HisG_C-term ATP phos 88.9 0.82 1.8E-05 34.8 4.5 37 65-101 61-97 (100)
17 PF10035 DUF2179: Uncharacteri 87.0 2.3 5E-05 28.2 5.3 39 125-168 16-54 (55)
18 PF08029 HisG_C: HisG, C-termi 78.9 22 0.00047 25.7 9.2 72 66-166 3-74 (75)
19 TIGR03455 HisG_C-term ATP phos 71.6 9.7 0.00021 28.9 4.9 72 67-167 28-99 (100)
20 PRK00489 hisG ATP phosphoribos 70.8 6.6 0.00014 34.4 4.3 37 65-101 247-283 (287)
21 PLN02245 ATP phosphoribosyl tr 66.5 9.7 0.00021 35.9 4.7 42 65-106 348-389 (403)
22 PF09413 DUF2007: Domain of un 63.1 13 0.00027 25.3 3.7 63 71-148 3-65 (67)
23 cd04915 ACT_AK-Ectoine_2 ACT d 55.0 64 0.0014 21.9 6.1 50 77-149 15-64 (66)
24 COG4747 ACT domain-containing 54.9 28 0.0006 28.1 4.7 118 67-184 2-130 (142)
25 PF00701 DHDPS: Dihydrodipicol 54.3 9.3 0.0002 33.2 2.2 87 76-164 20-106 (289)
26 PRK05783 hypothetical protein; 54.2 74 0.0016 23.6 6.7 31 68-100 2-38 (84)
27 PRK03170 dihydrodipicolinate s 52.9 12 0.00027 32.5 2.7 88 75-164 19-106 (292)
28 PRK03817 galactokinase; Provis 52.3 65 0.0014 28.8 7.3 68 76-166 278-345 (351)
29 cd00408 DHDPS-like Dihydrodipi 49.9 17 0.00036 31.3 3.0 88 75-164 15-102 (281)
30 PF03927 NapD: NapD protein; 48.5 1E+02 0.0022 22.2 8.0 65 71-164 8-72 (79)
31 PF12098 DUF3574: Protein of u 48.0 41 0.00088 26.0 4.6 51 93-151 36-86 (104)
32 cd00951 KDGDH 5-dehydro-4-deox 47.1 17 0.00038 31.8 2.7 87 75-164 18-104 (289)
33 PF13840 ACT_7: ACT domain ; P 46.1 51 0.0011 22.4 4.5 44 78-147 22-65 (65)
34 PLN02245 ATP phosphoribosyl tr 46.0 67 0.0015 30.4 6.5 81 67-167 302-386 (403)
35 TIGR00674 dapA dihydrodipicoli 45.7 22 0.00048 30.9 3.2 88 75-164 16-103 (285)
36 PLN02417 dihydrodipicolinate s 44.8 22 0.00048 31.1 3.0 88 75-164 19-106 (280)
37 cd00953 KDG_aldolase KDG (2-ke 41.8 39 0.00085 29.5 4.1 85 75-164 17-101 (279)
38 PRK03620 5-dehydro-4-deoxygluc 41.0 25 0.00054 31.1 2.8 87 75-164 25-111 (303)
39 cd00950 DHDPS Dihydrodipicolin 39.1 22 0.00047 30.7 2.1 88 75-164 18-105 (284)
40 PRK04194 hypothetical protein; 37.1 65 0.0014 30.2 5.0 68 66-151 246-316 (392)
41 PRK10553 assembly protein for 37.0 1.7E+02 0.0038 21.6 8.0 66 71-164 10-75 (87)
42 cd00952 CHBPH_aldolase Trans-o 36.8 28 0.00061 30.9 2.5 88 75-164 26-113 (309)
43 COG3323 Uncharacterized protei 36.4 36 0.00078 26.7 2.7 30 126-156 5-34 (109)
44 TIGR00299 conserved hypothetic 35.7 78 0.0017 29.7 5.3 68 65-151 244-315 (382)
45 PF01969 DUF111: Protein of un 35.7 1.2E+02 0.0025 28.4 6.4 70 64-151 246-318 (382)
46 PF09186 DUF1949: Domain of un 35.4 61 0.0013 20.6 3.4 29 122-150 26-54 (56)
47 PRK10665 nitrogen regulatory p 34.8 22 0.00049 27.4 1.3 77 2-92 5-82 (112)
48 PRK10858 nitrogen regulatory p 34.6 23 0.0005 27.3 1.4 77 2-92 5-82 (112)
49 TIGR00683 nanA N-acetylneurami 34.1 45 0.00097 29.3 3.3 88 75-164 18-106 (290)
50 COG2264 PrmA Ribosomal protein 34.0 2.4E+02 0.0051 25.7 7.9 36 66-101 2-37 (300)
51 cd04918 ACT_AK1-AT_2 ACT domai 33.9 1.4E+02 0.0031 19.8 5.9 50 77-149 14-63 (65)
52 KOG0333 U5 snRNP-like RNA heli 33.8 62 0.0014 32.2 4.4 89 71-167 520-627 (673)
53 COG0329 DapA Dihydrodipicolina 32.8 47 0.001 29.5 3.2 88 75-164 22-109 (299)
54 COG3439 Uncharacterized conser 32.6 67 0.0015 25.8 3.8 72 66-149 8-82 (137)
55 TIGR02313 HpaI-NOT-DapA 2,4-di 32.2 35 0.00076 30.0 2.3 88 75-164 18-105 (294)
56 PRK00555 galactokinase; Provis 31.5 1.9E+02 0.0042 26.3 7.0 67 75-164 289-355 (363)
57 COG1931 Uncharacterized protei 31.2 1.1E+02 0.0024 25.0 4.8 74 70-163 4-85 (140)
58 COG1284 Uncharacterized conser 30.6 3E+02 0.0064 24.7 7.9 78 69-169 205-282 (289)
59 PF01709 Transcrip_reg: Transc 29.5 69 0.0015 27.7 3.6 54 71-148 167-220 (234)
60 PF08501 Shikimate_dh_N: Shiki 29.4 56 0.0012 23.3 2.6 28 71-98 29-56 (83)
61 PRK04147 N-acetylneuraminate l 29.2 50 0.0011 28.9 2.8 88 75-164 21-109 (293)
62 PF08544 GHMP_kinases_C: GHMP 29.0 1.6E+02 0.0035 19.9 4.9 48 79-149 35-83 (85)
63 cd00954 NAL N-Acetylneuraminic 28.6 63 0.0014 28.2 3.3 88 75-164 18-106 (288)
64 COG3062 NapD Uncharacterized p 27.9 2.8E+02 0.006 21.2 7.2 64 72-164 12-75 (94)
65 PF09818 ABC_ATPase: Predicted 27.5 1.5E+02 0.0032 28.6 5.7 34 139-172 258-291 (448)
66 COG1325 Predicted exosome subu 27.2 3.6E+02 0.0078 22.3 9.0 63 69-150 10-79 (149)
67 PTZ00299 homoserine kinase; Pr 27.2 2.5E+02 0.0054 25.6 7.0 75 80-171 244-322 (336)
68 COG0655 WrbA Multimeric flavod 26.7 48 0.001 27.4 2.1 27 131-164 59-85 (207)
69 PLN02451 homoserine kinase 26.3 2.6E+02 0.0057 25.7 7.0 63 79-166 296-359 (370)
70 TIGR00824 EIIA-man PTS system, 26.1 1.6E+02 0.0034 22.4 4.7 39 127-165 30-68 (116)
71 PF12146 Hydrolase_4: Putative 25.7 95 0.0021 22.0 3.3 44 64-108 11-59 (79)
72 PRK05101 galactokinase; Provis 25.6 2.6E+02 0.0055 25.6 6.8 72 76-169 308-380 (382)
73 TIGR02625 YiiL_rotase L-rhamno 25.5 75 0.0016 24.2 2.8 20 81-100 25-44 (102)
74 TIGR03249 KdgD 5-dehydro-4-deo 25.5 67 0.0015 28.2 2.9 87 75-164 23-109 (296)
75 COG5583 Uncharacterized small 25.2 70 0.0015 22.0 2.3 27 74-100 5-31 (54)
76 PF01877 RNA_binding: RNA bind 25.2 3.2E+02 0.0069 21.0 6.6 66 70-152 4-71 (120)
77 PRK08210 aspartate kinase I; R 24.8 2.3E+02 0.0049 25.9 6.3 78 71-149 310-400 (403)
78 cd04883 ACT_AcuB C-terminal AC 24.6 1.8E+02 0.0039 19.1 4.3 28 66-93 40-67 (72)
79 cd04937 ACT_AKi-DapG-BS_2 ACT 24.6 2.1E+02 0.0047 18.8 5.9 49 76-149 14-62 (64)
80 PRK11713 16S ribosomal RNA met 23.7 1.9E+02 0.0042 24.5 5.3 37 64-100 72-108 (234)
81 PF03358 FMN_red: NADPH-depend 22.9 91 0.002 23.8 2.9 25 134-165 57-81 (152)
82 PRK03926 mevalonate kinase; Pr 22.9 4.9E+02 0.011 22.4 7.8 65 76-170 233-298 (302)
83 COG2893 ManX Phosphotransferas 22.6 2.1E+02 0.0045 23.0 5.0 41 125-165 28-69 (143)
84 cd04908 ACT_Bt0572_1 N-termina 22.5 2.4E+02 0.0052 18.6 4.8 31 68-98 1-33 (66)
85 COG0217 Uncharacterized conser 22.3 1.7E+02 0.0038 25.9 4.8 16 130-145 206-221 (241)
86 PRK00110 hypothetical protein; 21.4 1.1E+02 0.0023 26.9 3.3 23 123-147 199-221 (245)
87 COG0150 PurM Phosphoribosylami 21.3 1.6E+02 0.0036 27.3 4.6 89 69-170 216-315 (345)
88 COG2061 ACT-domain-containing 21.0 5E+02 0.011 21.8 7.1 38 125-166 130-168 (170)
89 COG0773 MurC UDP-N-acetylmuram 20.7 2.7E+02 0.0058 26.9 6.1 88 61-159 347-439 (459)
90 PRK12378 hypothetical protein; 20.4 1.2E+02 0.0026 26.5 3.4 53 71-147 168-220 (235)
91 TIGR00191 thrB homoserine kina 20.1 4E+02 0.0087 23.2 6.7 63 78-166 234-296 (302)
92 cd04882 ACT_Bt0572_2 C-termina 20.0 1.5E+02 0.0033 18.8 3.2 20 74-93 44-63 (65)
No 1
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-39 Score=247.96 Aligned_cols=112 Identities=53% Similarity=0.867 Sum_probs=110.0
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|||+++|.|+|+|+|.++.|+|.+|..+ |.||++|||+|+|+++|+++++|.+
T Consensus 1 MK~I~aIiRP~kl~~vkeaL~~~G~~gmTv~~V~G~G~Qkg~~e~yrg~~~~~~-~lpK~~ieIvV~de~ve~vie~I~~ 79 (112)
T COG0347 1 MKKIEAIIRPFKLDDVKEALEKAGVPGMTVTEVKGRGRQKGHTELYRGAEYEVD-FLPKVKIEIVVSDEDVDEVIEAIKK 79 (112)
T ss_pred CcEEEEEeCHHHhHHHHHHHHHcCCCceEEEeeeeecccCCccccccchhhhhh-cccceEEEEEEChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999984 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+|+||++|||||||+||++++||||||+|++||
T Consensus 80 ~a~tG~~GDGkIFV~~V~~~irIRTge~g~~al 112 (112)
T COG0347 80 AARTGKIGDGKIFVSPVEEVIRIRTGEEGEDAL 112 (112)
T ss_pred HHhcCCCCCeEEEEEEhheEEEEecCCcccccC
Confidence 999999999999999999999999999999996
No 2
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=100.00 E-value=2.1e-38 Score=245.45 Aligned_cols=112 Identities=47% Similarity=0.820 Sum_probs=109.1
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+|+++|++||.++||+|||+++|+|+|+|+|..+.|+|.++.. ++.||++|+++|+|+++++++++|.+
T Consensus 1 MK~I~AIIRp~kl~~v~~aL~~~G~~g~Tv~~V~G~G~q~g~~~~~~~~~~~~-~~~pK~~ieivv~D~~v~~vv~~I~~ 79 (112)
T PRK10858 1 MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMV-DFLPKVKIEIVVPDDIVDTCVDTIIR 79 (112)
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCeEEEEEeEecCCCCCCceeeecceeec-cceeeEEEEEEEChHhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888999999887 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+++||++|||||||+||++++||||||+|++|+
T Consensus 80 ~a~TG~~GDGkIfV~pV~~~vrIrTge~g~~al 112 (112)
T PRK10858 80 TAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI 112 (112)
T ss_pred HhccCCCCCcEEEEEEhhhEEEecCCCcccccC
Confidence 999999999999999999999999999999986
No 3
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=100.00 E-value=2.4e-38 Score=245.03 Aligned_cols=112 Identities=45% Similarity=0.780 Sum_probs=109.1
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+|+++|++||.++|++|||+++|+|+|+|.+..+.|+|.++.. ++.||++||++|+|+++|+++++|++
T Consensus 1 MK~I~AIIRp~kl~~v~~AL~~~G~~g~Tv~~V~G~G~q~g~~~~~rg~~~~~-~~~~k~~ieivv~de~ve~vv~~I~~ 79 (112)
T PRK10665 1 MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSV-NFLPKVKIDVAIADDQLDEVIDIISK 79 (112)
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCcEEEEeeEecCCCCCCcceeccceeee-cccceEEEEEEEChHhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888999999887 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+|+||++|||||||+||++++||||||+|++|+
T Consensus 80 ~a~TG~~GDGkIfV~pV~~~~rIrTge~g~~al 112 (112)
T PRK10665 80 AAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 112 (112)
T ss_pred HhccCCCCCcEEEEEEhhhEEEecCCCcCcccC
Confidence 999999999999999999999999999999986
No 4
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=99.97 E-value=2.9e-31 Score=200.25 Aligned_cols=102 Identities=52% Similarity=0.826 Sum_probs=97.3
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~ 150 (193)
|+|||||+++++|++||+++|++|+|+++++|+|++.+..+.|+|..+.. ++.+|++|+++|+|+++++++++|.++++
T Consensus 1 I~aIir~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~-~~~~k~~i~ivv~d~~v~~iv~~I~~~~~ 79 (102)
T PF00543_consen 1 IEAIIRPEKLEEVIEALREAGVPGMTVSEVRGRGRQKGQAEIYRGDEYFV-EFSPKVKIEIVVPDEDVEEIVEAISEAAR 79 (102)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTGSCEEEEEEEEESSTTTEEEEETTEEECC-CEEEEEEEEEEEEGGGHHHHHHHHHHHH-
T ss_pred CEEEEChhHHHHHHHHHHHCCCCeEEEEEeEEecccccccceeeeeeeee-cccccEEEEEEECHHhHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999998878899998876 48999999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCceEEcccC
Q 029477 151 TGEIGDGKIFLVPVSDVIRVRTG 173 (193)
Q Consensus 151 TG~~GDGkIFV~pVeeavrIrTg 173 (193)
||++|||||||+||++++|||||
T Consensus 80 tg~~GdGkIfV~~V~~airIrTg 102 (102)
T PF00543_consen 80 TGEPGDGKIFVSPVEDAIRIRTG 102 (102)
T ss_dssp SSSTTSEEEEEEEESEEEETTTT
T ss_pred CCCCCCEEEEEEEhheEEEecCC
Confidence 99999999999999999999997
No 5
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=99.17 E-value=8.3e-11 Score=91.21 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=70.4
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|.|||+.+..+.+.++|.+.|+....++...||.+.++ +.+.+.|+|+++++++++|.+
T Consensus 1 MKLiiaIVqd~Da~~l~~~L~~~g~~~TkLsstGGFLr~GN------------------tTlliGvede~v~~vl~iIk~ 62 (109)
T PF06153_consen 1 MKLIIAIVQDEDADDLSDALNENGFRVTKLSSTGGFLREGN------------------TTLLIGVEDEKVDEVLEIIKE 62 (109)
T ss_dssp -EEEEEEEEHHHHHHHHHHHHHTT--EEEEEEEETTTTEEE------------------EEEEEEEEGGGHHHHHHHHHH
T ss_pred CcEEEEEEcHhhHHHHHHHHHHCCceEEEEecccceeccCC------------------EEEEEEecHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998853 588999999999999999999
Q ss_pred HhccC------------------------CCCCeEEEEEecCceEEc
Q 029477 148 EARTG------------------------EIGDGKIFLVPVSDVIRV 170 (193)
Q Consensus 148 va~TG------------------------~~GDGkIFV~pVeeavrI 170 (193)
.|++- +.|...|||.|||++.++
T Consensus 63 ~c~~R~~~v~~~~~~~~~~~~~~~~pveV~vGGATVFVl~Ve~f~k~ 109 (109)
T PF06153_consen 63 NCKKREQIVTPPPPISESGEMYIPYPVEVEVGGATVFVLDVEQFEKF 109 (109)
T ss_dssp HH--EEEEE-----------------EEEEE--EEEEEEE-SEEEE-
T ss_pred hhcCceeeccCCCCCCCCcccccccceEEEEcccEEEEEEHHHeeeC
Confidence 99871 257789999999999875
No 6
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.83 E-value=2e-08 Score=77.03 Aligned_cols=85 Identities=24% Similarity=0.423 Sum_probs=76.6
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|.|||+....+++.++|.+.|+...-+....||-+.+| ..++|-++|++++++..+|.+
T Consensus 1 MKLiiaivqd~da~~l~~~L~d~~fraTkLAsTGGFlkaGN------------------TTfliGved~~vd~~~s~Ike 62 (109)
T COG3870 1 MKLIIAIVQDQDANELEDALTDKNFRATKLASTGGFLKAGN------------------TTFLIGVEDDRVDALRSLIKE 62 (109)
T ss_pred CeeEEEEEecccHHHHHHHHHhCCceeEEeeccCceeecCC------------------eEEEEecccchhHHHHHHHHH
Confidence 89999999999999999999999999999999999998854 477899999999999999999
Q ss_pred HhccC------------------------CCCCeEEEEEecCceEEc
Q 029477 148 EARTG------------------------EIGDGKIFLVPVSDVIRV 170 (193)
Q Consensus 148 va~TG------------------------~~GDGkIFV~pVeeavrI 170 (193)
.|+.- +.|...+||+|||+++.+
T Consensus 63 ~C~~req~v~~~~~~~~sa~~yvpypveV~vggatvfv~~ve~f~~~ 109 (109)
T COG3870 63 NCKSREQLVTPISPMGGSADSYVPYPVEVEVGGATVFVLPVEDFHQF 109 (109)
T ss_pred HhhhHhhccCCCCccCCCCCccccccEEEecCceEEEEecHHHhccC
Confidence 99872 357789999999998753
No 7
>PF11582 DUF3240: Protein of unknown function (DUF3240); InterPro: IPR021634 This family of proteins with unknown function appears to be restricted to Proteobacteria. ; PDB: 3CE8_A.
Probab=98.56 E-value=7e-07 Score=68.11 Aligned_cols=98 Identities=19% Similarity=0.374 Sum_probs=64.3
Q ss_pred CCCeEEEEEEECCCCHHHHHHHHHhC--CCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHH
Q 029477 65 DSKFYKVEAILRPWRVQQVSSALLNM--GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVI 142 (193)
Q Consensus 65 ~~~MKkIeAIIrp~kld~V~eAL~e~--Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VI 142 (193)
+++...++.|+++..-++|.+.|.+. +++|+|.+++.|+|+...... ...+. ......+++++++++++++.++
T Consensus 1 m~~~~~LtLi~~~~led~lvD~Ll~~~~~v~GFt~~~~~g~g~~~~~~s--~~EQV--~G~~~~~~~~~~~~~~~~~~Ll 76 (102)
T PF11582_consen 1 MSQDVLLTLIVPPELEDALVDYLLELPDGVSGFTSSPAEGHGSRHSLLS--AAEQV--SGRARRVRFQVILPEEDAEELL 76 (102)
T ss_dssp --SEEEEEEEEEGGGHHHHHHHHTT--TT----EEEEEEEEE-----------------EEEEEEEEEEEEEGGGHHHHH
T ss_pred CCccEEEEEECCHHHHHHHHHHHHHhcCccCCceEeeccccCCcccCCC--HHHhc--ccccceEEEEEEECHHHHHHHH
Confidence 35678899999999999999999999 679999999999999854211 00111 1345679999999999999999
Q ss_pred HHHHHHhccCCCCCe-EEEEEecCceEEc
Q 029477 143 DKIMEEARTGEIGDG-KIFLVPVSDVIRV 170 (193)
Q Consensus 143 eaI~~va~TG~~GDG-kIFV~pVeeavrI 170 (193)
+++.+... |.| +.||+||.++-+|
T Consensus 77 ~~L~~~~~----~~~i~ywv~Pv~~~G~l 101 (102)
T PF11582_consen 77 AALKQEFA----GTGIRYWVTPVIEFGRL 101 (102)
T ss_dssp HHHHHHTT----TS--EEEEEE-S-----
T ss_pred HHHHHHcC----CCCcEEEEEhHHhCccc
Confidence 99999875 444 8899999988665
No 8
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=2.8e-06 Score=65.86 Aligned_cols=82 Identities=27% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCc-------eEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccH
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIR-------GVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQV 138 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~-------G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~v 138 (193)
..|+||..+|+++.++.|++||-++|+. ++--+.+.|+.++......+.|.--.+ .+....|||++|+++..
T Consensus 3 ~~~~K~~vyVP~~~~e~vr~aL~~aGag~iG~Y~~C~~~~~g~G~frP~egAnP~iGevgk~-e~v~E~kiE~v~~~~~~ 81 (109)
T COG3323 3 EPLYKIEVYVPEEYVEQVRDALFEAGAGHIGNYDHCTFSSEGTGQFRPLEGANPFIGEVGKL-EFVAEVKIEFVVPAELR 81 (109)
T ss_pred cceeEEEEEeCHHHHHHHHHHHHhcCCcceeccceEEEEeeeeEEEeecCCCCCcccccceE-EeeeeeEEEEEcCHHHH
Confidence 3699999999999999999999999876 666778999999987777777765444 47889999999999999
Q ss_pred HHHHHHHHHH
Q 029477 139 EGVIDKIMEE 148 (193)
Q Consensus 139 e~VIeaI~~v 148 (193)
+.++.+|+++
T Consensus 82 ~~v~~~ik~a 91 (109)
T COG3323 82 AAVLSAIKKA 91 (109)
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 9
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=97.81 E-value=0.00014 Score=55.13 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=62.0
Q ss_pred CeEEEEEEECCCC-------HHHHHHHHHhCCCceEEEEe-eeeecccCCCceecccccccccccceeEEEEEEEcCccH
Q 029477 67 KFYKVEAILRPWR-------VQQVSSALLNMGIRGVTVSD-VRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQV 138 (193)
Q Consensus 67 ~MKkIeAIIrp~k-------ld~V~eAL~e~Gv~G~TV~~-V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~v 138 (193)
+.+++++++.... .+.+.+.|++.|+.|.|++. +.|||...-.. ....+... .-.-+.||++-++|++
T Consensus 2 ~~~~Lriy~~e~~~~~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G~~~~ih---~~~~~~l~-~~lPvvIe~id~~eki 77 (101)
T PF02641_consen 2 KAKLLRIYLSESDRWGGKPLYEWLLERAREAGIAGATVFRGIEGFGSSGRIH---SARLLELS-DDLPVVIEFIDTEEKI 77 (101)
T ss_dssp SEEEEEEEEETT-EETTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE----------------T-TS-EEEEEEEEEHHHH
T ss_pred ceEEEEEEEcCccccCceEHHHHHHHHHHHCCCCeEEEEcceeeeCCCCccc---ccchhhhc-CCCCEEEEEEcCHHHH
Confidence 5789999997754 89999999999999999995 89999974221 11111111 1223699999999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 139 EGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 139 e~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
+.+++.+.+... +|.|.+.||+
T Consensus 78 ~~~l~~l~~~~~-----~glit~~~v~ 99 (101)
T PF02641_consen 78 EAFLPELKELVK-----DGLITLEDVE 99 (101)
T ss_dssp HHHHHHHCTT-S-----SSEEEEEEEE
T ss_pred HHHHHHHHHHcC-----CCEEEEEEEE
Confidence 999999877655 4899998875
No 10
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=97.11 E-value=0.0053 Score=47.30 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=73.4
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceeccccccccc---------ccce-eEEEEEEEcCc
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED---------KFVA-KVKMEIVVSKD 136 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d---------~~~~-KvkIeIVV~de 136 (193)
.+++++.+|.++.+.+++.+|.+.|+.|+-+.+=+|..-+. +.|.+..+| ++.. -+.|-.||+++
T Consensus 3 mkv~l~lFVe~eNvGkaiN~mad~GiTGFfl~eYrGvsPd~-----wkgf~~~EDpE~aik~i~D~s~~AVlI~tVV~Ee 77 (110)
T COG4075 3 MKVLLRLFVEEENVGKAINIMADAGITGFFLHEYRGVSPDK-----WKGFSKEEDPESAIKAIRDLSDKAVLIGTVVKEE 77 (110)
T ss_pred eeEeEEEEecHHHHHHHHHHHHhcCcceEEEEEecCcChhH-----hcCcccccCHHHHHHHHHHhhhceEEEEEecCHH
Confidence 47889999999999999999999999999999988876542 333333332 2333 37788899999
Q ss_pred cHHHHHHHHHHHhccCCCCCeEEEEEecCceE
Q 029477 137 QVEGVIDKIMEEARTGEIGDGKIFLVPVSDVI 168 (193)
Q Consensus 137 ~ve~VIeaI~~va~TG~~GDGkIFV~pVeeav 168 (193)
.++++.+.+.+-... .--.|..+|+++.+
T Consensus 78 ~vekie~~~~Ekla~---eryTIi~ipI~~I~ 106 (110)
T COG4075 78 KVEKIEELLKEKLAN---ERYTIIEIPIEKII 106 (110)
T ss_pred HHHHHHHHHHHHhcC---CceEEEEeeeeeEE
Confidence 999999999988764 33578888988764
No 11
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=96.59 E-value=0.014 Score=45.50 Aligned_cols=90 Identities=26% Similarity=0.337 Sum_probs=64.7
Q ss_pred CCeEEEEEEECCCC-------HHHHHHHHHhCCCceEEEEe-eeeecccCCCc-eecccccccccccceeEEEEEEEcCc
Q 029477 66 SKFYKVEAILRPWR-------VQQVSSALLNMGIRGVTVSD-VRGFGAQGGST-ERHGGSEFSEDKFVAKVKMEIVVSKD 136 (193)
Q Consensus 66 ~~MKkIeAIIrp~k-------ld~V~eAL~e~Gv~G~TV~~-V~G~G~~~g~~-e~~~G~~~~~d~~~~KvkIeIVV~de 136 (193)
.+++++.+++..+. .+.+.+-|++.|+.|.|+.. +.|||+.+-.. ....-...+ + =+.||+|=..+
T Consensus 4 ~~~~lLrIy~~E~d~~eGkp~~~~iverlre~Gi~GATVlRGI~GfG~~~~~h~~~if~Ls~~----L-PVviEvVD~ee 78 (109)
T COG1993 4 MKSKLLRIYLGENDKHEGKPLYEAIVERLREEGIRGATVLRGIAGFGKDGKIHGSKIFRLSTD----L-PVVVEVVDEEE 78 (109)
T ss_pred ccceeeEEEEccccccCCeEHHHHHHHHHHHcCcCceeeeeeeeccCCCCcccccchhhccCC----C-CEEEEEeCCHH
Confidence 35788888886554 45699999999999999995 89999985321 111111111 1 27888888888
Q ss_pred cHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 137 QVEGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 137 ~ve~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
..+..++.+.+.-+ +|.|..-||+
T Consensus 79 kI~~~l~~l~e~~~-----~~lit~e~v~ 102 (109)
T COG1993 79 KIERFLPELDEIIK-----NGLITLEPVE 102 (109)
T ss_pred HHHHHHHHHHHHhh-----cceEEEEEEE
Confidence 99999999988855 4677776664
No 12
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=96.30 E-value=0.039 Score=43.03 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=70.5
Q ss_pred EEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceeccccccccc---------cc-ceeEEEEEEEcCccH
Q 029477 69 YKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED---------KF-VAKVKMEIVVSKDQV 138 (193)
Q Consensus 69 KkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d---------~~-~~KvkIeIVV~de~v 138 (193)
.++..+|..+.+.+++.||.+.|++|+-+.+-+|..-+. +.|....+| ++ .+-+.|-.||+.+.+
T Consensus 5 vl~klFVe~eNlGKaINaLte~GITGFyl~eYkGmSP~~-----wkgf~l~EDpe~ai~~I~d~s~~aV~I~TVV~~~~~ 79 (110)
T PF10126_consen 5 VLLKLFVESENLGKAINALTEGGITGFYLHEYKGMSPQD-----WKGFLLDEDPEMAIKAINDLSENAVLIGTVVDEEKV 79 (110)
T ss_pred EEEEEEEehhHHHHHHHHHHhcCccEEEeEeecCCChHH-----hcCcccccCHHHHHHHHHHhccCcEEEEEEECHHHH
Confidence 467889999999999999999999999999999987542 223222222 23 356899999999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecCce
Q 029477 139 EGVIDKIMEEARTGEIGDGKIFLVPVSDV 167 (193)
Q Consensus 139 e~VIeaI~~va~TG~~GDGkIFV~pVeea 167 (193)
+.+.+.|.+.... -.-.|...||...
T Consensus 80 ~~i~~~i~ekL~~---eryTii~iPi~~i 105 (110)
T PF10126_consen 80 EKIEKLIKEKLKN---ERYTIIEIPILGI 105 (110)
T ss_pred HHHHHHHHHHhcC---CceEEEEeeEEEE
Confidence 9999999998874 3356777777643
No 13
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=94.73 E-value=0.17 Score=46.24 Aligned_cols=82 Identities=11% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHH
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 145 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI 145 (193)
++|+.|+++|+.++.+.+.+.|++.+-.+....... .+ ......+.+.++++++|++++.+
T Consensus 1 m~mRliev~iP~~~~~~v~~~l~~~~~~~i~~~~~~---~~----------------~~~~~~i~~~v~~~~~e~vld~L 61 (325)
T TIGR00341 1 GRHRTNDCLIPKEGVVMRKEIVRGEDLEEIAIELGD---KT----------------FIYDDRIELYVQDSDTEKIVSRL 61 (325)
T ss_pred CCceEEEEEeccchHHHHHHHHhccCcccceEEecc---CC----------------CCcceEEEEEcChhhHHHHHHHH
Confidence 469999999999999999999988766555433111 00 11225899999999999999999
Q ss_pred HHHhccCCCCCeEEEE-EecCceEE
Q 029477 146 MEEARTGEIGDGKIFL-VPVSDVIR 169 (193)
Q Consensus 146 ~~va~TG~~GDGkIFV-~pVeeavr 169 (193)
++.. -++ ||.+-+ .++|-++-
T Consensus 62 ~~lg-l~~--~~~~~vv~~~e~v~s 83 (325)
T TIGR00341 62 KDKL-LGY--KESIIVVYKPEFVIS 83 (325)
T ss_pred HHcC-CCC--CCcEEEEeccceecC
Confidence 9886 344 445555 68887774
No 14
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=93.84 E-value=0.23 Score=36.03 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 64 PDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 64 ~~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
.+..++-|.++|..+.+.++++.|+++|..|+.++++.
T Consensus 36 ~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 36 ADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S
T ss_pred CCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 44579999999999999999999999999999998764
No 15
>PRK04164 hypothetical protein; Provisional
Probab=93.62 E-value=0.67 Score=38.76 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=56.8
Q ss_pred EEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHh
Q 029477 70 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 149 (193)
Q Consensus 70 kIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va 149 (193)
.+. ||.++.-+++.+.|++.| .|.|+.++.|. + + ++..|.++++..+..++.+.|.+.-
T Consensus 94 ~v~-IIT~~~~~~i~~~Lr~~g-rGVT~~~g~G~--~-~----------------~r~vL~~Vv~R~e~~~L~~iI~~iD 152 (181)
T PRK04164 94 TVR-VITKEYELELANELRELG-YGVTVFDAEGR--D-G----------------PRMVLFILTKRKREKELLEIIKELD 152 (181)
T ss_pred EEE-EEeCCchHHHHHHHHHCC-CCEEEEEEEEC--C-C----------------CEEEEEEEEcHHHHHHHHHHHHHHC
Confidence 444 444444456999999987 89999988776 2 1 2469999999999999999999985
Q ss_pred ccCCCCCeEEEEEecCceEE
Q 029477 150 RTGEIGDGKIFLVPVSDVIR 169 (193)
Q Consensus 150 ~TG~~GDGkIFV~pVeeavr 169 (193)
.. ..|-|+++.++.+
T Consensus 153 P~-----AFi~v~dv~~V~G 167 (181)
T PRK04164 153 PK-----AFIISYEPRSFKG 167 (181)
T ss_pred CC-----eEEEEEeCeEEEc
Confidence 43 6788888888764
No 16
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=88.92 E-value=0.82 Score=34.76 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=34.1
Q ss_pred CCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 65 DSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 65 ~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
+..|.-|.++|+...+.++.+.|+++|..++.++++.
T Consensus 61 ~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~~i~ 97 (100)
T TIGR03455 61 DEGWVAVHAVVDEKVVNELIDKLKAAGARDILVLPIE 97 (100)
T ss_pred CCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEechH
Confidence 4579999999999999999999999999999998764
No 17
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=87.02 E-value=2.3 Score=28.21 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=24.8
Q ss_pred eeEEEEEEEcCccHHHHHHHHHHHhccCCCCCeEEEEEecCceE
Q 029477 125 AKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVI 168 (193)
Q Consensus 125 ~KvkIeIVV~de~ve~VIeaI~~va~TG~~GDGkIFV~pVeeav 168 (193)
++.+|.++|+..++.++.+.|.+.=. +..|.|.++.++.
T Consensus 16 ~~~~l~~v~~r~e~~~l~~~I~~~Dp-----~AFi~v~~v~~v~ 54 (55)
T PF10035_consen 16 EKTVLYTVVSRRELPKLKKIIKEIDP-----KAFISVSDVSEVY 54 (55)
T ss_dssp --EEEEEEEECCHHHHHHHHHHCC-T-----T-EEEE-------
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHhCC-----CEEEEEEccEEeE
Confidence 46799999999999999999988744 3688888877654
No 18
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=78.90 E-value=22 Score=25.70 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=52.4
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHH
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 145 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI 145 (193)
.+++.|+.=++.++++++.+.|- |..+=||+++ +.. .-+-|.++|+.+++-++++.+
T Consensus 3 ~~~~~l~~Nvp~~~l~~v~~ilP--g~~~PTVs~L---~~~------------------~w~AV~~vV~~~~~~~~~~~L 59 (75)
T PF08029_consen 3 RGYVLLMMNVPRESLEEVIKILP--GLKSPTVSPL---ADE------------------DWVAVHAVVPEKQVWDLMDKL 59 (75)
T ss_dssp CCEEEEEEEEECCCHHHHHHHS----SSS-EEEE----SST------------------TEEEEEEEEECCCHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHhCC--CCCCCceeec---CCC------------------CEEEEEEEecHHHHHHHHHHH
Confidence 35889999999999999998443 6677788888 111 125789999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCc
Q 029477 146 MEEARTGEIGDGKIFLVPVSD 166 (193)
Q Consensus 146 ~~va~TG~~GDGkIFV~pVee 166 (193)
++++-+ =|.|+|++.
T Consensus 60 k~~GA~------~Ilv~pi~~ 74 (75)
T PF08029_consen 60 KAAGAS------DILVLPIEK 74 (75)
T ss_dssp HCTT-E------EEEEEE-S-
T ss_pred HHcCCC------EEEEEeccc
Confidence 988543 588999875
No 19
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=71.64 E-value=9.7 Score=28.88 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=54.8
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 146 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~ 146 (193)
.++.|..-++.++++++.+.| -|..|=||+...+ ..-+-|..+|+.+++-++++.++
T Consensus 28 ~~~~v~~Nvp~~~l~~v~~il--Pg~~~PTVs~l~~---------------------~~w~AV~~vv~~~~v~~~~~~Lk 84 (100)
T TIGR03455 28 GKVLLMMNVPRDNLDEVRALL--PGLEGPTVSPLAD---------------------EGWVAVHAVVDEKVVNELIDKLK 84 (100)
T ss_pred heeEEEEeCChhhHHHHHHhc--CCCCCCCcCcCCC---------------------CCeEEEEEEEcHHHHHHHHHHHH
Confidence 588999999999999999965 4555555655431 01257899999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCce
Q 029477 147 EEARTGEIGDGKIFLVPVSDV 167 (193)
Q Consensus 147 ~va~TG~~GDGkIFV~pVeea 167 (193)
+.+- -=|.|+|++.+
T Consensus 85 ~~GA------~~Ilv~~i~~~ 99 (100)
T TIGR03455 85 AAGA------RDILVLPIEKC 99 (100)
T ss_pred HcCC------CeEEEechHHh
Confidence 8844 46889988743
No 20
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=70.81 E-value=6.6 Score=34.35 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 65 DSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 65 ~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
+..+.-|.++|+.+.+.++++.|+++|..++.++++.
T Consensus 247 ~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~~i~ 283 (287)
T PRK00489 247 DEGWVAVHAVVPEDLVWELMDKLKALGARGILVLPIE 283 (287)
T ss_pred CCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEechH
Confidence 4579999999999999999999999999999998764
No 21
>PLN02245 ATP phosphoribosyl transferase
Probab=66.52 E-value=9.7 Score=35.91 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=37.0
Q ss_pred CCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccc
Q 029477 65 DSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQ 106 (193)
Q Consensus 65 ~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~ 106 (193)
+..++-|.++|+...+.++++.|+++|..|+.++++.-.-..
T Consensus 348 ~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~IlV~pI~yvf~~ 389 (403)
T PLN02245 348 AVDYYAIVICVPKKALYESVQQLRKIGGSGVLVSPLTYIFDE 389 (403)
T ss_pred CCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEEcceeeecC
Confidence 347999999999999999999999999999999987655444
No 22
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=63.11 E-value=13 Score=25.25 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=35.1
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHH
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEE 148 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~v 148 (193)
|--.=.+...+-++..|.+.|++.+...+-.+-. .| . ... .. .++++|++++.++..++|.+.
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--~g-------~-~g~---~~--~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--AG-------E-PGT---GG--QVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S----SS-------------S-----SS--SEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--hc-------c-cCc---cC--ceEEEECHHHHHHHHHHHHHh
Confidence 3333456677889999999999988654221111 11 1 110 11 188999999999999988653
No 23
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=55.01 E-value=64 Score=21.92 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHh
Q 029477 77 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 149 (193)
Q Consensus 77 p~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va 149 (193)
+.-..++.++|.+.|+.-..++.. ..+..|.++|++++.++++++|.+..
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~-----------------------~s~~~is~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQS-----------------------MRNVDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEec-----------------------CCeeEEEEEEEHHHHHHHHHHHHHHH
Confidence 445667777777777765444321 12358899999999999999998764
No 24
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=54.92 E-value=28 Score=28.12 Aligned_cols=118 Identities=24% Similarity=0.315 Sum_probs=64.1
Q ss_pred CeEEEEEEE--CCCCHHHHHHHHHhCCC--ceEEEEeeeeecccCCCc-ee-cccccccccccceeEEEEEEEcCccHHH
Q 029477 67 KFYKVEAIL--RPWRVQQVSSALLNMGI--RGVTVSDVRGFGAQGGST-ER-HGGSEFSEDKFVAKVKMEIVVSKDQVEG 140 (193)
Q Consensus 67 ~MKkIeAII--rp~kld~V~eAL~e~Gv--~G~TV~~V~G~G~~~g~~-e~-~~G~~~~~d~~~~KvkIeIVV~de~ve~ 140 (193)
..|+|-.++ +|+++..+.++|.++|+ ..+|+.+..-||--.-.. .+ +.-.-+.+..|.-+++=-+-|+-+++--
T Consensus 2 ~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG 81 (142)
T COG4747 2 IVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPG 81 (142)
T ss_pred ceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCC
Confidence 468888888 89999999999999974 588888887777432110 00 0000111112333444444455555555
Q ss_pred HHHHHHHHhccCCCC--CeEEEEEecCceEEc-c--cCCcchhhhhccC
Q 029477 141 VIDKIMEEARTGEIG--DGKIFLVPVSDVIRV-R--TGERGEKAERMAG 184 (193)
Q Consensus 141 VIeaI~~va~TG~~G--DGkIFV~pVeeavrI-r--TgE~G~~Al~~~~ 184 (193)
-+..|.++....... =--.||+.=+.++-| | .-+++..||+-.|
T Consensus 82 ~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~g 130 (142)
T COG4747 82 GLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAG 130 (142)
T ss_pred cHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcC
Confidence 555566655442221 123455555554433 3 3345556665444
No 25
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.26 E-value=9.3 Score=33.18 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 029477 76 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 155 (193)
Q Consensus 76 rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~G 155 (193)
+.+.+.+..+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-|.....+++++.++.+-..|-
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Ga-- 97 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGA-- 97 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCc--
Confidence 445677888899999999999976666665544333222222222223457889999999999999999999887654
Q ss_pred CeEEEEEec
Q 029477 156 DGKIFLVPV 164 (193)
Q Consensus 156 DGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 98 d~v~v~~P~ 106 (289)
T PF00701_consen 98 DAVLVIPPY 106 (289)
T ss_dssp SEEEEEEST
T ss_pred eEEEEeccc
Confidence 677777773
No 26
>PRK05783 hypothetical protein; Provisional
Probab=54.24 E-value=74 Score=23.59 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEEEEEEE--CCCCH----HHHHHHHHhCCCceEEEEee
Q 029477 68 FYKVEAIL--RPWRV----QQVSSALLNMGIRGVTVSDV 100 (193)
Q Consensus 68 MKkIeAII--rp~kl----d~V~eAL~e~Gv~G~TV~~V 100 (193)
|.+++.+| +++-+ ..|..||...|+.+ +.+|
T Consensus 2 ~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~--V~~V 38 (84)
T PRK05783 2 KYYVELIIINKDSVRDPEGETIQRYVIERYTGN--IIEV 38 (84)
T ss_pred cEEEEEEEEECCCCcCchHHHHHHHHHHcCCCC--cceE
Confidence 45555555 55544 57999999998877 4444
No 27
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=52.92 E-value=12 Score=32.52 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=63.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-+.....++.++.++.+...|-
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~- 97 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGA- 97 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCC-
Confidence 6778889999999999999999887777776665444443333332222345677888888899999999888877644
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 98 -d~v~~~pP~ 106 (292)
T PRK03170 98 -DGALVVTPY 106 (292)
T ss_pred -CEEEECCCc
Confidence 566666664
No 28
>PRK03817 galactokinase; Provisional
Probab=52.28 E-value=65 Score=28.81 Aligned_cols=68 Identities=26% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 029477 76 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 155 (193)
Q Consensus 76 rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~G 155 (193)
....++++.+..++.|+-|..++-. |+| | -+..++++++.+++.+.+.+........
T Consensus 278 s~p~ld~l~~~a~~~GalGaklsGa-G~G---g-------------------~vlal~~~~~~~~~~~~l~~~~~~~~~~ 334 (351)
T PRK03817 278 SCEELDFFVEFALELGAYGARLTGA-GFG---G-------------------SAIALVDKGKFESIGEELLEEYKKRFGI 334 (351)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEecC-CCC---e-------------------EEEEEEchHHHHHHHHHHHHHHHHhcCC
Confidence 4566888888888888888776522 222 1 2444577888999999988865433334
Q ss_pred CeEEEEEecCc
Q 029477 156 DGKIFLVPVSD 166 (193)
Q Consensus 156 DGkIFV~pVee 166 (193)
+..+|+++..+
T Consensus 335 ~~~~~~~~~~~ 345 (351)
T PRK03817 335 DPKYFVVESSD 345 (351)
T ss_pred CCcEEEEecCC
Confidence 56788887643
No 29
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=49.95 E-value=17 Score=31.29 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-+.....++.++.++.+...|-
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Ga- 93 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGA- 93 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCC-
Confidence 5677888999999999999998887777766654444332223222222346788888888899999999888877654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 94 -d~v~v~pP~ 102 (281)
T cd00408 94 -DGVLVVPPY 102 (281)
T ss_pred -CEEEECCCc
Confidence 556666654
No 30
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=48.51 E-value=1e+02 Score=22.20 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=45.8
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~ 150 (193)
+..-.+|++++.|.++|.++ +|.-+ .+.... -||-++++.+..+.+.+.+.....
T Consensus 8 ~vV~~~p~~~~~v~~~l~~~--~gvEV---h~~~~~--------------------GKiVVtiE~~~~~~~~~~~~~i~~ 62 (79)
T PF03927_consen 8 LVVHARPERLEEVAEALAAI--PGVEV---HAVDED--------------------GKIVVTIEAESSEEEVDLIDAINA 62 (79)
T ss_dssp EEEEE-CCCHHHHHHHHCCS--TTEEE---EEEETT--------------------TEEEEEEEESSHHHHHHHHHHHCC
T ss_pred EEEEECchhHHHHHHHHHcC--CCcEE---EeeCCC--------------------CeEEEEEEeCChHHHHHHHHHHHc
Confidence 45566999999999999875 55533 333322 278889999999999999988765
Q ss_pred cCCCCCeEEEEEec
Q 029477 151 TGEIGDGKIFLVPV 164 (193)
Q Consensus 151 TG~~GDGkIFV~pV 164 (193)
. +|.+-++.|
T Consensus 63 l----~GVlsa~lv 72 (79)
T PF03927_consen 63 L----PGVLSASLV 72 (79)
T ss_dssp S----TTEEEEEES
T ss_pred C----CCceEEEEE
Confidence 3 456666554
No 31
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=47.96 E-value=41 Score=25.97 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=32.1
Q ss_pred ceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 93 RGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 93 ~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.|+|+.++.|.++-... |.-. ....|+.+.+.-++...+.-|++|+++=+.
T Consensus 36 dGlTv~Da~GqW~~~~~-----g~~~---rE~Skvv~i~~~~~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 36 DGLTVLDAYGQWRDRAT-----GRLI---RERSKVVIIVHPDTPAAEARIEAIREAYKQ 86 (104)
T ss_pred CCceEEeccceEecCCC-----CcEe---ecccEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 48999999999987322 1111 133444444444456678888888876554
No 32
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=47.07 E-value=17 Score=31.81 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=59.4
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-+.. ..++.++.++.+...|-
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Ga- 95 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGA- 95 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCC-
Confidence 5667788999999999999999987777776655444322222222112335666676766 88999999888877764
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 96 -d~v~~~pP~ 104 (289)
T cd00951 96 -DGILLLPPY 104 (289)
T ss_pred -CEEEECCCC
Confidence 566666664
No 33
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=46.14 E-value=51 Score=22.43 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 78 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 78 ~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
+-+..+.++|.++|+.-+.++ ....+.++|+++++++.++++.+
T Consensus 22 Gv~a~i~~~La~~~I~i~~is--------------------------S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 22 GVAAKIFSALAEAGINIFMIS--------------------------SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHHHHHHTTS-ECEEE--------------------------ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCEEEEE--------------------------EeeeEEEEEeHHHHHHHHHHhcC
Confidence 344566666666666655544 12478899999999999999864
No 34
>PLN02245 ATP phosphoribosyl transferase
Probab=46.04 E-value=67 Score=30.40 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=57.4
Q ss_pred CeEEEEEEECCCCHHHHHHHHHh----CCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLN----MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVI 142 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e----~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VI 142 (193)
.++.|++=++.++++++.+.|.. -|..+=||+.+.|.....+ -..-+-|.++|+.+.+-+++
T Consensus 302 ~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~--------------~~~w~AV~~vV~~~~v~~~~ 367 (403)
T PLN02245 302 GQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKV--------------AVDYYAIVICVPKKALYESV 367 (403)
T ss_pred cEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccC--------------CCCEEEEEEEEcHHHHHHHH
Confidence 47888888888888888888655 3677778887653221100 01135799999999999999
Q ss_pred HHHHHHhccCCCCCeEEEEEecCce
Q 029477 143 DKIMEEARTGEIGDGKIFLVPVSDV 167 (193)
Q Consensus 143 eaI~~va~TG~~GDGkIFV~pVeea 167 (193)
+.+++++.. =|.|+|++=+
T Consensus 368 ~~Lk~~GA~------~IlV~pI~yv 386 (403)
T PLN02245 368 QQLRKIGGS------GVLVSPLTYI 386 (403)
T ss_pred HHHHHcCCC------eEEEEcceee
Confidence 999988553 4778887644
No 35
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=45.74 E-value=22 Score=30.93 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=61.3
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....+++++....+...|
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G-- 93 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG-- 93 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC--
Confidence 556678889999999999999987666766655444433222322222234577888888889999999988887764
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
=||.+.+.|.
T Consensus 94 ad~v~v~pP~ 103 (285)
T TIGR00674 94 ADGFLVVTPY 103 (285)
T ss_pred CCEEEEcCCc
Confidence 2567766665
No 36
>PLN02417 dihydrodipicolinate synthase
Probab=44.75 E-value=22 Score=31.06 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=64.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....+++++....+...|.
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Ga- 97 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGM- 97 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCC-
Confidence 5566788999999999999999987777777665445443333333223446788899999999999999888877653
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 98 -dav~~~~P~ 106 (280)
T PLN02417 98 -HAALHINPY 106 (280)
T ss_pred -CEEEEcCCc
Confidence 566666664
No 37
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.80 E-value=39 Score=29.48 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=61.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+... +... +|..-|.....++.++.++.+...|.
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~-~~~~--~vi~gvg~~~~~~ai~~a~~a~~~Ga- 92 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYS-DITD--KVIFQVGSLNLEESIELARAAKSFGI- 92 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHH-HHcC--CEEEEeCcCCHHHHHHHHHHHHHcCC-
Confidence 6777889999999999999999987777776655444332222222 1232 36777888889999999998887754
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 93 -d~v~v~~P~ 101 (279)
T cd00953 93 -YAIASLPPY 101 (279)
T ss_pred -CEEEEeCCc
Confidence 678777775
No 38
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=40.96 E-value=25 Score=31.10 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=58.8
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-+.. ..++.++.++.+...|-
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Ga- 102 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGA- 102 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCC-
Confidence 5667788999999999999999876666666654444332222222112345666777765 88999999888877654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 103 -dav~~~pP~ 111 (303)
T PRK03620 103 -DGILLLPPY 111 (303)
T ss_pred -CEEEECCCC
Confidence 566666553
No 39
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=39.06 E-value=22 Score=30.73 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=62.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....+++++.++.+...|-
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~- 96 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGA- 96 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCC-
Confidence 6778889999999999999999986667666654444333333322222335677888888899999999888877643
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+...|.
T Consensus 97 -d~v~~~~P~ 105 (284)
T cd00950 97 -DAALVVTPY 105 (284)
T ss_pred -CEEEEcccc
Confidence 556666663
No 40
>PRK04194 hypothetical protein; Provisional
Probab=37.08 E-value=65 Score=30.23 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=53.3
Q ss_pred CCeEEEEEEE---CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHH
Q 029477 66 SKFYKVEAIL---RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVI 142 (193)
Q Consensus 66 ~~MKkIeAII---rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VI 142 (193)
.....+++=| .++.+.-+.+.|.+.|+--+.++.+.+.=-. |-.+|.++|+.++.+++.
T Consensus 246 d~v~vlEtniDD~t~E~lg~~~e~L~~~GAlDV~~tPi~MKK~R------------------Pg~~L~vl~~~~~~~~l~ 307 (392)
T PRK04194 246 EEVVVLETNIDDLSPEVLGYLFERLLEAGALDVFITPITMKKNR------------------PGHLLTVICPPEKAEELA 307 (392)
T ss_pred ceEEEEEecCcCCCHHHHHHHHHHHHHCCCceeeeccceecCCC------------------ceeEEEEEeCHHHHHHHH
Confidence 3466777777 5778889999999999999888887553211 126899999999999999
Q ss_pred HHHHHHhcc
Q 029477 143 DKIMEEART 151 (193)
Q Consensus 143 eaI~~va~T 151 (193)
+.|.+.-.|
T Consensus 308 ~~if~eTtT 316 (392)
T PRK04194 308 RILFRETGT 316 (392)
T ss_pred HHHHhcCCC
Confidence 999987554
No 41
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=36.98 E-value=1.7e+02 Score=21.64 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=46.3
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~ 150 (193)
+..-.+|+++++|+++|.++ +|.- +.+.-.+ +=||-++++.+..+.+++.|...-.
T Consensus 10 lVV~~~Pe~~~~V~~~l~~i--pg~E---vh~~d~~-------------------~GKiVVtiE~~~~~~~~~~i~~I~~ 65 (87)
T PRK10553 10 LVVQAKSERISDISTQLNAF--PGCE---VAVSDAP-------------------SGQLIVVVEAEDSETLLQTIESVRN 65 (87)
T ss_pred EEEEeChHHHHHHHHHHHcC--CCcE---EEeecCC-------------------CCeEEEEEEeCChHHHHHHHHHHHc
Confidence 45567999999999999987 2222 2222111 2378899999999999999888866
Q ss_pred cCCCCCeEEEEEec
Q 029477 151 TGEIGDGKIFLVPV 164 (193)
Q Consensus 151 TG~~GDGkIFV~pV 164 (193)
. +|.+-+.-|
T Consensus 66 l----~GVlsa~lV 75 (87)
T PRK10553 66 V----EGVLAVSLV 75 (87)
T ss_pred C----CCceEEEEE
Confidence 4 456655554
No 42
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.78 E-value=28 Score=30.93 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=63.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....+++++.++.+...|-
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Ga- 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGA- 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCC-
Confidence 6777889999999999999999987777776654444322222222223446788888988999999999888877642
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 105 -d~vlv~~P~ 113 (309)
T cd00952 105 -DGTMLGRPM 113 (309)
T ss_pred -CEEEECCCc
Confidence 567776663
No 43
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.41 E-value=36 Score=26.66 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=24.3
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 029477 126 KVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 156 (193)
Q Consensus 126 KvkIeIVV~de~ve~VIeaI~~va~TG~~GD 156 (193)
-.|+++.|+.+.++.+-+++-+++ .|++||
T Consensus 5 ~~K~~vyVP~~~~e~vr~aL~~aG-ag~iG~ 34 (109)
T COG3323 5 LYKIEVYVPEEYVEQVRDALFEAG-AGHIGN 34 (109)
T ss_pred eeEEEEEeCHHHHHHHHHHHHhcC-Ccceec
Confidence 469999999999999999977654 466665
No 44
>TIGR00299 conserved hypothetical protein TIGR00299. Members of this family are found in the Archaea and in several different bacteria lineages. The function in unknown and the genomic context is not well conserved.
Probab=35.71 E-value=78 Score=29.66 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCCeEEEEEEE---CCCCHHHHHHHHHhCCCceEEEEeeeee-cccCCCceecccccccccccceeEEEEEEEcCccHHH
Q 029477 65 DSKFYKVEAIL---RPWRVQQVSSALLNMGIRGVTVSDVRGF-GAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 140 (193)
Q Consensus 65 ~~~MKkIeAII---rp~kld~V~eAL~e~Gv~G~TV~~V~G~-G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~ 140 (193)
......+++=| .++.+..+.+.|.++|+--+.++.+... ||+ -.+|.++|+.++.+.
T Consensus 244 ~d~v~vlEtniDD~t~E~lg~~~e~L~~~GAlDV~~tPi~MKK~RP-------------------g~~L~vlc~~~~~~~ 304 (382)
T TIGR00299 244 HETITVLETNVDDISGEALGYLLESLLEQGALDVFTIPIYMKKNRP-------------------GILLRVICAPENQEE 304 (382)
T ss_pred CCeEEEEEecCcCCCHHHHHHHHHHHHHCCCceeeeccceeeCCCc-------------------eeEEEEEeCHHHHHH
Confidence 35577788877 6778889999999999998888876543 222 268999999999999
Q ss_pred HHHHHHHHhcc
Q 029477 141 VIDKIMEEART 151 (193)
Q Consensus 141 VIeaI~~va~T 151 (193)
+.+.|.+.-.|
T Consensus 305 l~~~if~eTtT 315 (382)
T TIGR00299 305 VLNLLFRETGS 315 (382)
T ss_pred HHHHHHHhCCC
Confidence 99999987555
No 45
>PF01969 DUF111: Protein of unknown function DUF111; InterPro: IPR002822 The proteins in this family have no known function.; PDB: 3C19_A.
Probab=35.70 E-value=1.2e+02 Score=28.41 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=53.8
Q ss_pred CCCCeEEEEEEE---CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHH
Q 029477 64 PDSKFYKVEAIL---RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 140 (193)
Q Consensus 64 ~~~~MKkIeAII---rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~ 140 (193)
....+-.|++=| .++.+..+.+.|.+.|+--+.++.+.+. . | =|-.+|.++|+.++.+.
T Consensus 246 ~~d~v~vlEtniDD~s~E~lg~~~e~L~~~GAlDV~~~Pi~MK--K-~---------------RPg~~l~Vl~~~~~~~~ 307 (382)
T PF01969_consen 246 ETDEVVVLETNIDDMSPEELGYLIERLLEAGALDVFFTPIQMK--K-N---------------RPGYLLTVLCRPEDAEA 307 (382)
T ss_dssp ----EEEEEEEEETTSTTHHHHHHHHHTTSTEEEEEEEEEEET--T-T---------------EEEEEEEEEEHHHHHHH
T ss_pred CCCeEEEEEeeccCCCHHHHHHHHHHHHHcCCceeEEccceEE--c-C---------------ceeEEEEEEeCHHHHHH
Confidence 444688889988 7899999999999999988888876543 2 2 12368999999999999
Q ss_pred HHHHHHHHhcc
Q 029477 141 VIDKIMEEART 151 (193)
Q Consensus 141 VIeaI~~va~T 151 (193)
+.+.|.+...|
T Consensus 308 l~~~if~eTtT 318 (382)
T PF01969_consen 308 LAELIFRETTT 318 (382)
T ss_dssp HHHHHHHHH--
T ss_pred HHHHHHHhCCC
Confidence 99999988766
No 46
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=35.40 E-value=61 Score=20.62 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=25.3
Q ss_pred ccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 029477 122 KFVAKVKMEIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 122 ~~~~KvkIeIVV~de~ve~VIeaI~~va~ 150 (193)
.|..++.+.+.|+.++++...+.|.+..+
T Consensus 26 ~y~~~V~~~v~v~~~~~~~f~~~l~~~t~ 54 (56)
T PF09186_consen 26 DYTDDVTLTVAVPEEEVEEFKAQLTDLTS 54 (56)
T ss_dssp EECTTEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred eecceEEEEEEECHHHHHHHHHHHHHHcC
Confidence 36667999999999999999999988765
No 47
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=34.80 E-value=22 Score=27.40 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=45.4
Q ss_pred ccccCCcccccccccccccccccccccccCCCccccccccceeccCcceeeeeeeec-CCCCCCCCCeEEEEEEECCCCH
Q 029477 2 AAIANPASFTPLNFSSHLKELPLVNFGSVRPSLRISRLSRLKCTRNVSNLHVIRAQS-SPDYIPDSKFYKVEAILRPWRV 80 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~MKkIeAIIrp~kl 80 (193)
.|+.+|.-+..+.=.|+...+|-.+.+-+.-+-. +.+ .....|... ..+|.| -.+|+.+++.+.+
T Consensus 5 ~AIIRp~kl~~v~~AL~~~G~~g~Tv~~V~G~G~----------q~g-~~~~~rg~~~~~~~~~---k~~ieivv~de~v 70 (112)
T PRK10665 5 TVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGR----------QKG-HAELYRGAEYSVNFLP---KVKIDVAIADDQL 70 (112)
T ss_pred EEEECHHHHHHHHHHHHHCCCCcEEEEeeEecCC----------CCC-Ccceeccceeeecccc---eEEEEEEEChHhH
Confidence 4677777777777666666555554432221111 111 001111111 234544 4889999999999
Q ss_pred HHHHHHHHhCCC
Q 029477 81 QQVSSALLNMGI 92 (193)
Q Consensus 81 d~V~eAL~e~Gv 92 (193)
+++.+++.++.-
T Consensus 71 e~vv~~I~~~a~ 82 (112)
T PRK10665 71 DEVIDIISKAAY 82 (112)
T ss_pred HHHHHHHHHHhc
Confidence 999999999854
No 48
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=34.55 E-value=23 Score=27.33 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=45.6
Q ss_pred ccccCCcccccccccccccccccccccccCCCccccccccceeccCcceeeeeeeec-CCCCCCCCCeEEEEEEECCCCH
Q 029477 2 AAIANPASFTPLNFSSHLKELPLVNFGSVRPSLRISRLSRLKCTRNVSNLHVIRAQS-SPDYIPDSKFYKVEAILRPWRV 80 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~MKkIeAIIrp~kl 80 (193)
.|+.+|.-+..+.=.|+...+|-.+.+-+.-+-. |.+. ....+... ..+|.| ..+|+.+++.+.+
T Consensus 5 ~AIIRp~kl~~v~~aL~~~G~~g~Tv~~V~G~G~----------q~g~-~~~~~~~~~~~~~~p---K~~ieivv~D~~v 70 (112)
T PRK10858 5 DAIIKPFKLDDVREALAEVGITGMTVTEVKGFGR----------QKGH-TELYRGAEYMVDFLP---KVKIEIVVPDDIV 70 (112)
T ss_pred EEEECHHHHHHHHHHHHHCCCCeEEEEEeEecCC----------CCCC-ceeeecceeecccee---eEEEEEEEChHhH
Confidence 4677777777776666666555554433221111 1110 11122111 234554 4889999999999
Q ss_pred HHHHHHHHhCCC
Q 029477 81 QQVSSALLNMGI 92 (193)
Q Consensus 81 d~V~eAL~e~Gv 92 (193)
++|.+++.++.-
T Consensus 71 ~~vv~~I~~~a~ 82 (112)
T PRK10858 71 DTCVDTIIRTAQ 82 (112)
T ss_pred HHHHHHHHHHhc
Confidence 999999998854
No 49
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=34.15 E-value=45 Score=29.33 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=60.5
Q ss_pred ECCCCHHHHHHHHHhCC-CceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCC
Q 029477 75 LRPWRVQQVSSALLNMG-IRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGE 153 (193)
Q Consensus 75 Irp~kld~V~eAL~e~G-v~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~ 153 (193)
|+.+.+.+..+.|.+.| +.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....+++++.++.+...|-
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Ga 97 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 97 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 56677888999999999 99999887767666654433322222222222345677778888889999999988877643
Q ss_pred CCCeEEEEEec
Q 029477 154 IGDGKIFLVPV 164 (193)
Q Consensus 154 ~GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 98 --d~v~v~~P~ 106 (290)
T TIGR00683 98 --DCLSAVTPF 106 (290)
T ss_pred --CEEEEeCCc
Confidence 567766664
No 50
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=2.4e+02 Score=25.67 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
+.+..+..++..+..+.+.++|.+.|+.|+++.+..
T Consensus 2 m~w~el~i~~~~~~aE~~~~~l~e~G~~~v~~eD~~ 37 (300)
T COG2264 2 MPWIELSLITTGEAAERVSDALEEAGAVGVAIEDAK 37 (300)
T ss_pred CceEEEEEEeCHHHHHHHHHHHHhcCcceeeeeccc
Confidence 456788888999999999999999999999999886
No 51
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.94 E-value=1.4e+02 Score=19.85 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHh
Q 029477 77 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 149 (193)
Q Consensus 77 p~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va 149 (193)
+.-+.++.++|.+.|++-.-++.. . ....|.+++++++.++++++|.+..
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g----~-------------------s~~sis~~v~~~~~~~av~~Lh~~f 63 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQG----A-------------------SKVNISLIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEec----C-------------------ccceEEEEEeHHHHHHHHHHHHHHH
Confidence 445678888888888876555321 1 1247889999999999999988753
No 52
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.78 E-value=62 Score=32.18 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=60.1
Q ss_pred EEEEEC-CCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceec---------------ccccccccccceeEEEEEEEc
Q 029477 71 VEAILR-PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERH---------------GGSEFSEDKFVAKVKMEIVVS 134 (193)
Q Consensus 71 IeAIIr-p~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~---------------~G~~~~~d~~~~KvkIeIVV~ 134 (193)
|.++|+ ..-.+.|-+-|.++|+.+.|+.-.+|.-......+.| +|..+ | -|..|++
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI------p--nVSlVin 591 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI------P--NVSLVIN 591 (673)
T ss_pred EEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC------C--ccceeee
Confidence 455553 4456778888899998888887665554432211111 22222 1 3677889
Q ss_pred CccHHHHHHHHHHHhccC---CCCCeEEEEEecCce
Q 029477 135 KDQVEGVIDKIMEEARTG---EIGDGKIFLVPVSDV 167 (193)
Q Consensus 135 de~ve~VIeaI~~va~TG---~~GDGkIFV~pVeea 167 (193)
-+.+..+.+-+.++++|| +.|-.+-|+++-+.+
T Consensus 592 ydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 592 YDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred cchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 999999999999999985 577788898887644
No 53
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=32.81 E-value=47 Score=29.54 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=65.3
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..-.+...+....++.|.+-+.....++.++..+.+...|
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G-- 99 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG-- 99 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC--
Confidence 445567889999999999999998777777776555544444444432334566888899999999999999888887
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
=||.+-+.|.
T Consensus 100 ad~il~v~Py 109 (299)
T COG0329 100 ADGILVVPPY 109 (299)
T ss_pred CCEEEEeCCC
Confidence 3567777764
No 54
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=32.62 E-value=67 Score=25.80 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCeEEEEEEECCC---CHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHH
Q 029477 66 SKFYKVEAILRPW---RVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVI 142 (193)
Q Consensus 66 ~~MKkIeAIIrp~---kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VI 142 (193)
..|.++++-.+-. ..+.|.++|.++|+.-++..++.=--+..|. . -.+...|..+|...-.+.++
T Consensus 8 ~~~~~~~~~s~~~~~E~i~~l~~~lk~~G~~V~~~id~~e~l~~~g~--------~----~~~p~~Il~~cnP~~g~~ll 75 (137)
T COG3439 8 RAMMLVTAESKLSFDETIERLEEKLKKNGFKVFTEIDHAEALKNAGV--------L----DIPPYTILVFCNPKAGTPLL 75 (137)
T ss_pred ccceeEEEEecCCHHHHHHHHHHHHHhCCCeEEEEecHHHHHHhcCc--------C----CCCCeEEEEEcCCcccchhh
Confidence 3566777766543 4567788889999999999987544444331 1 25668999999999999987
Q ss_pred HHHHHHh
Q 029477 143 DKIMEEA 149 (193)
Q Consensus 143 eaI~~va 149 (193)
..=.+.+
T Consensus 76 ~~~p~~g 82 (137)
T COG3439 76 SKNPEFG 82 (137)
T ss_pred ccChhhh
Confidence 7655443
No 55
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.25 E-value=35 Score=30.04 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=61.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|..-|.....++.++.++.+...|-
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Ga- 96 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGA- 96 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCC-
Confidence 5566788999999999999999887777776654444322222222223446777788888999999999998876542
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 97 -d~v~v~pP~ 105 (294)
T TIGR02313 97 -DAAMVIVPY 105 (294)
T ss_pred -CEEEEcCcc
Confidence 566666665
No 56
>PRK00555 galactokinase; Provisional
Probab=31.55 E-value=1.9e+02 Score=26.29 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=45.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|....++.+.+++++.|+-|..++-. |+| | -+..+++++.++++.+.+.+.-.....
T Consensus 289 vS~~~ld~l~~~a~~~Ga~GaklsGa-G~G---g-------------------~vial~~~~~~~~~~~~l~~~y~~~~~ 345 (363)
T PRK00555 289 ITTERIDLIADSAVRAGALGARMTGG-GFG---G-------------------CVIALVPADRAEDVADTVRRAAVTAGY 345 (363)
T ss_pred CCChhHHHHHHHHHhcCCeEEEECCC-Ccc---C-------------------eEEEEEchhHHHHHHHHHHHHHHHccC
Confidence 45677888888888888887766422 332 2 234567788899999988877765445
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
++-.+|++.-
T Consensus 346 ~~~~~~~~~~ 355 (363)
T PRK00555 346 PEPAVSRTYA 355 (363)
T ss_pred CCCcEEEEec
Confidence 5567777643
No 57
>COG1931 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.22 E-value=1.1e+02 Score=24.96 Aligned_cols=74 Identities=24% Similarity=0.261 Sum_probs=46.9
Q ss_pred EEEEEEC-CCCHHHHHHHHHhCCCceEEEE--ee-----eeecccCCCceecccccccccccceeEEEEEEEcCccHHHH
Q 029477 70 KVEAILR-PWRVQQVSSALLNMGIRGVTVS--DV-----RGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGV 141 (193)
Q Consensus 70 kIeAIIr-p~kld~V~eAL~e~Gv~G~TV~--~V-----~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~V 141 (193)
+|+|-|+ .+.-++|.+|+... |+++++. +- .|.|+.......+++.- .-+.+
T Consensus 4 ~v~a~V~PTED~~KV~kAi~Nl-Fp~~~ie~~~~~~~~~~~~~~~~~sL~~l~elL-------------------r~qrI 63 (140)
T COG1931 4 EVEAEVYPTEDPEKVLKAILNL-FPGAEIEVEDEDYEILVGEGRTLKSLERLRELL-------------------RKQRI 63 (140)
T ss_pred EEEEEeccCCCHHHHHHHHHhc-CCchheEeeccceeeeeeccchHHHHHHHHHHH-------------------HHhHH
Confidence 5778884 47889999999988 7766554 21 22222211111111111 23678
Q ss_pred HHHHHHHhccCCCCCeEEEEEe
Q 029477 142 IDKIMEEARTGEIGDGKIFLVP 163 (193)
Q Consensus 142 IeaI~~va~TG~~GDGkIFV~p 163 (193)
+++.+.+...|..|++..|-+.
T Consensus 64 lDtAR~~l~kG~~~~~v~f~ln 85 (140)
T COG1931 64 LDTARMVLEKGLTGNEVTFYLN 85 (140)
T ss_pred HHHHHHHHHccccCCeEEEEEe
Confidence 8888888888999998888765
No 58
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=3e+02 Score=24.70 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=52.5
Q ss_pred EEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHH
Q 029477 69 YKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEE 148 (193)
Q Consensus 69 KkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~v 148 (193)
.++..| -.++-+++.+++.+.==+|.|..+.+|- .. -.+|..+.+||...+..++.+.+.+.
T Consensus 205 ~k~~~i-is~~~~~i~~~i~~~~~~g~T~l~g~Gg--Yt---------------~~~k~vl~~Vv~~~e~~~lk~iv~~i 266 (289)
T COG1284 205 SKVVII-ISKKEEEIAALILEELGRGVTYLDGEGG--YT---------------GEEKKVLYVVVTRLELPKLKEIVKEI 266 (289)
T ss_pred eEEEEE-eCChHHHHHHHHHHHhCCceEEEeceec--CC---------------CCceEEEEEEecHHHHHHHHHHHHHh
Confidence 344333 3455566666666665678888776552 21 13567999999999999999998887
Q ss_pred hccCCCCCeEEEEEecCceEE
Q 029477 149 ARTGEIGDGKIFLVPVSDVIR 169 (193)
Q Consensus 149 a~TG~~GDGkIFV~pVeeavr 169 (193)
=. +..+-|+++.++.+
T Consensus 267 Dp-----~Afi~i~~~~~v~G 282 (289)
T COG1284 267 DP-----NAFISISDVREVLG 282 (289)
T ss_pred CC-----CcEEEEecchhccc
Confidence 33 36777777766543
No 59
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=29.51 E-value=69 Score=27.73 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=29.3
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHH
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEE 148 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~v 148 (193)
++.+..|..+..|+++|.+.|+ .+.. .++ .+.|+..+++ ++++.+.+.+.|-..
T Consensus 167 ~~~~c~p~~~~~v~~~L~~~g~---~i~~----------------~e~---~~~P~~~v~l--~~e~~~~~~~lie~L 220 (234)
T PF01709_consen 167 FEFICDPSDLSAVKKALEKKGY---EIES----------------AEL---EYIPNNPVEL--SEEDAEKVEKLIEAL 220 (234)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT------SE----------------EEE---EEEESS-EE----HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHcCC---CeeE----------------EEE---EEeCCCCccc--CHHHHHHHHHHHHHH
Confidence 6666677777777777777644 1110 111 3677778777 666666666555443
No 60
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=29.40 E-value=56 Score=23.32 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.2
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEE
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVS 98 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~ 98 (193)
+..=+.++.++++.+.+++.++.|+.|+
T Consensus 29 ~~~~v~~~~l~~~~~~~~~~~~~G~~VT 56 (83)
T PF08501_consen 29 IPFEVEPEDLEDFLDALRAPNFRGLNVT 56 (83)
T ss_dssp EEEETSTTCHHHHHHHHHHTTESEEEE-
T ss_pred EEeecCHHHHHHHHHHHhcCCCCeeeec
Confidence 3344568999999999999999999997
No 61
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=29.22 E-value=50 Score=28.86 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred ECCCCHHHHHHHHHh-CCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCC
Q 029477 75 LRPWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGE 153 (193)
Q Consensus 75 Irp~kld~V~eAL~e-~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~ 153 (193)
|+.+.+.++.+.|.+ .|+.|+.+.-..|-+......|+..=.+...+....++.|..-+.....+++++.++.+...|
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~G- 99 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELG- 99 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcC-
Confidence 556678899999999 999999987666666655433322222222222234567777888888999999998887775
Q ss_pred CCCeEEEEEec
Q 029477 154 IGDGKIFLVPV 164 (193)
Q Consensus 154 ~GDGkIFV~pV 164 (193)
=||.+.+.|.
T Consensus 100 -ad~v~v~~P~ 109 (293)
T PRK04147 100 -YDAISAVTPF 109 (293)
T ss_pred -CCEEEEeCCc
Confidence 3567766664
No 62
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.97 E-value=1.6e+02 Score=19.93 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEE-cCccHHHHHHHHHHHh
Q 029477 79 RVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVV-SKDQVEGVIDKIMEEA 149 (193)
Q Consensus 79 kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV-~de~ve~VIeaI~~va 149 (193)
.+.++++++++.|+.+..++ |.| .|. .|..++ +++.++++.+.+.+..
T Consensus 35 ~i~~~~~~~~~~Ga~~~~~s---GsG--~G~------------------~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 35 EIDELKEAAEENGALGAKMS---GSG--GGP------------------TVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHHTTESEEEEE---TTS--SSS------------------EEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCceecC---CCC--CCC------------------eEEEEECCHHHHHHHHHHHHHhC
Confidence 46789999999996666554 222 121 456677 6778899999887653
No 63
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.61 E-value=63 Score=28.18 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=60.3
Q ss_pred ECCCCHHHHHHHHHhC-CCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCC
Q 029477 75 LRPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGE 153 (193)
Q Consensus 75 Irp~kld~V~eAL~e~-Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~ 153 (193)
|+.+-+.++.+.|.+. |+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....+++++....+...|-
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence 5666788899999999 999999887767666554333322223222212345677888888899999999888877653
Q ss_pred CCCeEEEEEec
Q 029477 154 IGDGKIFLVPV 164 (193)
Q Consensus 154 ~GDGkIFV~pV 164 (193)
||.+.+.|.
T Consensus 98 --d~v~~~~P~ 106 (288)
T cd00954 98 --DAISAITPF 106 (288)
T ss_pred --CEEEEeCCC
Confidence 567766664
No 64
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=27.94 E-value=2.8e+02 Score=21.23 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=47.5
Q ss_pred EEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 72 EAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 72 eAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
..-.+|+++++|+.+|.++-. . +|.+.+.+ =||-+|.+.++.+.+.+.|..+-..
T Consensus 12 Vv~~~pe~l~av~~~L~~ip~--~---EV~~~d~~--------------------GKlVVVie~~~~~~l~~tie~i~nl 66 (94)
T COG3062 12 VVQAKPERLSAVKTALLAIPG--C---EVYGEDAE--------------------GKLVVVIEAEDSETLLETIESIRNL 66 (94)
T ss_pred eeecCHHHHHHHHHHHhcCCC--c---EeeccCCC--------------------ceEEEEEEcCchHHHHHHHHHHhcC
Confidence 344589999999999998732 2 33333333 2888999999999999998887664
Q ss_pred CCCCCeEEEEEec
Q 029477 152 GEIGDGKIFLVPV 164 (193)
Q Consensus 152 G~~GDGkIFV~pV 164 (193)
||.|-++=|
T Consensus 67 ----~gVlav~lV 75 (94)
T COG3062 67 ----PGVLAVSLV 75 (94)
T ss_pred ----CceeEEEEE
Confidence 678877766
No 65
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=27.52 E-value=1.5e+02 Score=28.61 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecCceEEccc
Q 029477 139 EGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRT 172 (193)
Q Consensus 139 e~VIeaI~~va~TG~~GDGkIFV~pVeeavrIrT 172 (193)
--++++|..=-+.--+|||+=||+...++++||.
T Consensus 258 STLL~Ale~GVYnHipGDGRE~VVT~~~avkirA 291 (448)
T PF09818_consen 258 STLLEALERGVYNHIPGDGREFVVTDPDAVKIRA 291 (448)
T ss_pred HHHHHHHHhcccCCCCCCCceEEEECCCceEEEe
Confidence 4566777666666679999999999999999986
No 66
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=27.16 E-value=3.6e+02 Score=22.25 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=42.8
Q ss_pred EEEEEEE-CCCCHHHHHHHHHhCCCce-----EEEEeeeeecccCCCceecccccccccccceeEEEEEEEcC-ccHHHH
Q 029477 69 YKVEAIL-RPWRVQQVSSALLNMGIRG-----VTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK-DQVEGV 141 (193)
Q Consensus 69 KkIeAII-rp~kld~V~eAL~e~Gv~G-----~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~d-e~ve~V 141 (193)
-.+.+|| -.+.-++|.+||... +++ ..+....| +.+| .+ ..+++-+++ ...+++
T Consensus 10 i~~rv~iHaTED~~kV~eAL~~~-~p~~~~~e~ev~~aeG--hyGN--------pI--------~il~~~l~~~~~~~~f 70 (149)
T COG1325 10 IEIRVIIHATEDEEKVLEALENF-FPEAIDVEIEVTEAEG--HYGN--------PI--------TILEVRLERSREARKF 70 (149)
T ss_pred EEEEEEEEccCCHHHHHHHHHHh-cCcccccceEEEEeec--ccCC--------eE--------EEEEEEecCcHHHHHH
Confidence 5677888 578999999999998 332 34444433 3322 22 456666776 668888
Q ss_pred HHHHHHHhc
Q 029477 142 IDKIMEEAR 150 (193)
Q Consensus 142 IeaI~~va~ 150 (193)
++.|++...
T Consensus 71 lk~i~e~l~ 79 (149)
T COG1325 71 LKKLRELLG 79 (149)
T ss_pred HHHHHHhcC
Confidence 888888877
No 67
>PTZ00299 homoserine kinase; Provisional
Probab=27.15 E-value=2.5e+02 Score=25.58 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcC---ccHHHHHHHHHHHhccCCCCC
Q 029477 80 VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK---DQVEGVIDKIMEEARTGEIGD 156 (193)
Q Consensus 80 ld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~d---e~ve~VIeaI~~va~TG~~GD 156 (193)
++++++++.+.|.-|.+++ |-|-.- +. +.++-..-+..++ +..+++.+++.++... .--+
T Consensus 244 ~~~v~~~~~~~Ga~g~~lS---GSGPTv----------~a---l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 306 (336)
T PTZ00299 244 FRPCVKAAREAGAHYAFLS---GAGPSV----------CA---LVGGRHGDPLTQPREERKAESVAEAMIKAAEA-VGVA 306 (336)
T ss_pred HHHHHHHHHHCCCeEEEEE---chhhhh----------eE---EeccccccccccccchhHHHHHHHHHHHHHHH-cCCc
Confidence 6999999999999998886 333210 00 0111111112222 2366777777776542 2236
Q ss_pred eEEEEEecCc-eEEcc
Q 029477 157 GKIFLVPVSD-VIRVR 171 (193)
Q Consensus 157 GkIFV~pVee-avrIr 171 (193)
++++++++++ -.++.
T Consensus 307 ~~~~~~~~~~~G~~~~ 322 (336)
T PTZ00299 307 GRVIITQPSDQGVHLV 322 (336)
T ss_pred eEEEEccCCCCCcEEE
Confidence 8999999986 55554
No 68
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=26.74 E-value=48 Score=27.39 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=22.9
Q ss_pred EEEcCccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 029477 131 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPV 164 (193)
Q Consensus 131 IVV~de~ve~VIeaI~~va~TG~~GDGkIFV~pV 164 (193)
...+|+..+++.+.|.++ ||+||-+||
T Consensus 59 c~~~dD~~~~i~~~l~~a-------D~iI~gsPv 85 (207)
T COG0655 59 CVIKDDDMNEIYEKLLEA-------DGIIFGSPV 85 (207)
T ss_pred CCCCcccHHHHHHHHHHC-------CEEEEeCCe
Confidence 666777899999998876 899999996
No 69
>PLN02451 homoserine kinase
Probab=26.31 E-value=2.6e+02 Score=25.67 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEc-CccHHHHHHHHHHHhccCCCCCe
Q 029477 79 RVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS-KDQVEGVIDKIMEEARTGEIGDG 157 (193)
Q Consensus 79 kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~-de~ve~VIeaI~~va~TG~~GDG 157 (193)
.++++++++++.|..|..++ |.|. .+..+++ ++.++++.+.+.+.......-.+
T Consensus 296 ~l~~l~~~~~~~GA~ga~mS---GSGp----------------------tvfal~~~~~~a~~i~~~l~~~~~~~~~~~~ 350 (370)
T PLN02451 296 GMEAVKKAALEAGAYGCTIS---GAGP----------------------TAVAVIDDEEKGEEVGERMVEAFRKAGNLKA 350 (370)
T ss_pred cHHHHHHHHHHCCCeEEEEE---ccch----------------------heEEEEcCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 46888999999998877654 4443 1234455 35678888888776533221236
Q ss_pred EEEEEecCc
Q 029477 158 KIFLVPVSD 166 (193)
Q Consensus 158 kIFV~pVee 166 (193)
.++++.++.
T Consensus 351 ~~~~~~~d~ 359 (370)
T PLN02451 351 TASVKKLDR 359 (370)
T ss_pred eEEEeccCC
Confidence 899999885
No 70
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=26.15 E-value=1.6e+02 Score=22.36 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=27.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
+...=+-+++..+...+.+.+....-..++|.|+.+|+-
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~ 68 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIF 68 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 333334556667777777777776666789999999973
No 71
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=25.74 E-value=95 Score=22.02 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCCCeEEEEEEEC-----CCCHHHHHHHHHhCCCceEEEEeeeeecccCC
Q 029477 64 PDSKFYKVEAILR-----PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGG 108 (193)
Q Consensus 64 ~~~~MKkIeAIIr-----p~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g 108 (193)
|+...|-+..|++ ..+..++-+.|.+.|+.-++. +-+|+|+..|
T Consensus 11 p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~-D~rGhG~S~g 59 (79)
T PF12146_consen 11 PENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY-DHRGHGRSEG 59 (79)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE-CCCcCCCCCC
Confidence 4444577777774 457888999999999887754 8999999875
No 72
>PRK05101 galactokinase; Provisional
Probab=25.62 E-value=2.6e+02 Score=25.63 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHhC-CCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 76 RPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 76 rp~kld~V~eAL~e~-Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
....+|.+.+..++. |+.|. ....|-|.. | -+..+|+.+.++++++.+.+.=....-
T Consensus 308 S~~eld~lv~~a~~~~Ga~gG--akltGaG~G-G-------------------~~ial~~~~~~~~~~~~~~~~y~~~~~ 365 (382)
T PRK05101 308 TVPQIDTLVEIVKAVIGDQGG--VRMTGGGFG-G-------------------CIVALVPEELVEAVRQAVAEQYEAKTG 365 (382)
T ss_pred CCHhHHHHHHHHHhccCCcce--EEeccCCCc-c-------------------EEEEEEcHHHHHHHHHHHHHHHHHhhC
Confidence 344677777777775 76432 222233322 2 234568899999999998665221111
Q ss_pred CCeEEEEEecCceEE
Q 029477 155 GDGKIFLVPVSDVIR 169 (193)
Q Consensus 155 GDGkIFV~pVeeavr 169 (193)
.+-.+|++...+-.+
T Consensus 366 ~~~~~~~~~~~~Ga~ 380 (382)
T PRK05101 366 LKETFYVCKASQGAG 380 (382)
T ss_pred CCCeEEEEecCCCcc
Confidence 223667766554433
No 73
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=25.53 E-value=75 Score=24.18 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCceEEEEee
Q 029477 81 QQVSSALLNMGIRGVTVSDV 100 (193)
Q Consensus 81 d~V~eAL~e~Gv~G~TV~~V 100 (193)
++|.++|+++|+..++|+--
T Consensus 25 PEv~~~L~~~Gi~~ysIfl~ 44 (102)
T TIGR02625 25 PELKEVLKSHGAHNYSIFLD 44 (102)
T ss_pred HHHHHHHHHCCCeEEEEEEE
Confidence 57999999999999999754
No 74
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=25.51 E-value=67 Score=28.16 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=54.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.. ..++.++....+...|-
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Ga- 100 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGA- 100 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCC-
Confidence 4556788999999999999999876666665544333222122211112334556666664 58888888777766544
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
|+.+.+.|-
T Consensus 101 -dav~~~pP~ 109 (296)
T TIGR03249 101 -DGYLLLPPY 109 (296)
T ss_pred -CEEEECCCC
Confidence 566666663
No 75
>COG5583 Uncharacterized small protein [Function unknown]
Probab=25.16 E-value=70 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.8
Q ss_pred EECCCCHHHHHHHHHhCCCceEEEEee
Q 029477 74 ILRPWRVQQVSSALLNMGIRGVTVSDV 100 (193)
Q Consensus 74 IIrp~kld~V~eAL~e~Gv~G~TV~~V 100 (193)
+..|..+++++++|+..-+..+|++==
T Consensus 5 ~~~~~~~ekI~~~Le~lkyGsV~ItVh 31 (54)
T COG5583 5 IKDPEVIEKIKKALEGLKYGSVTITVH 31 (54)
T ss_pred ccchHHHHHHHHHHhhcccceEEEEEE
Confidence 567889999999999999888887643
No 76
>PF01877 RNA_binding: RNA binding; InterPro: IPR002739 The proteins in this entry are functionally uncharacterised.; PDB: 2WNY_B 2NWU_A 2NRQ_A 2OGK_A 3D7A_B 3C9G_B 2PZZ_D.
Probab=25.15 E-value=3.2e+02 Score=21.01 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=39.5
Q ss_pred EEEEEE-CCCCHHHHHHHHHhCCC-ceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 70 KVEAIL-RPWRVQQVSSALLNMGI-RGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 70 kIeAII-rp~kld~V~eAL~e~Gv-~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
.+.|++ ..+..++|.+||... + +...+..-...|..++ |-..+++.+..+...+.++.+.+
T Consensus 4 ~v~a~v~~TED~eKV~~Al~nl-f~~~~~~~~~~~~G~ygn----------------~I~~l~~~i~~~~~~~~l~~l~~ 66 (120)
T PF01877_consen 4 EVRAFVHPTEDEEKVKKALSNL-FPPDAEIEIEEEEGHYGN----------------PITILEVRIEGKEALKSLKKLHE 66 (120)
T ss_dssp EEEEEE-TTB-HHHHHHHHHHH-SCTTSEEEEEEEECCEEE----------------EEEEEEEEEEECHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHHHH-hCCCCceEEEEeccccCC----------------ceEEEEEEEecccHHHHHHHHHH
Confidence 577888 557899999999998 4 3333333333343321 22566666766666666666666
Q ss_pred HhccC
Q 029477 148 EARTG 152 (193)
Q Consensus 148 va~TG 152 (193)
..+..
T Consensus 67 ~l~~~ 71 (120)
T PF01877_consen 67 LLRDQ 71 (120)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 55543
No 77
>PRK08210 aspartate kinase I; Reviewed
Probab=24.78 E-value=2.3e+02 Score=25.93 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=52.3
Q ss_pred EEEEECCCCHHHHHHHHHhCCC-----ceEEEEeeeeecccCCCce--e-c-----ccccccccccceeEEEEEEEcCcc
Q 029477 71 VEAILRPWRVQQVSSALLNMGI-----RGVTVSDVRGFGAQGGSTE--R-H-----GGSEFSEDKFVAKVKMEIVVSKDQ 137 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv-----~G~TV~~V~G~G~~~g~~e--~-~-----~G~~~~~d~~~~KvkIeIVV~de~ 137 (193)
+.-.+..+..+++.++|.+.+. .++++..+-|.|....... . + .+..... -......+.+++++++
T Consensus 310 is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~-~~~s~~~is~vv~~~~ 388 (403)
T PRK08210 310 VVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ-SADSHTTIWVLVKEED 388 (403)
T ss_pred EEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE-EecCCCEEEEEEcHHH
Confidence 5556677788899999999886 4666677888887642111 0 0 1111110 1125678999999999
Q ss_pred HHHHHHHHHHHh
Q 029477 138 VEGVIDKIMEEA 149 (193)
Q Consensus 138 ve~VIeaI~~va 149 (193)
.+++++++.+..
T Consensus 389 ~~~a~~~Lh~~f 400 (403)
T PRK08210 389 MEKAVNALHDAF 400 (403)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 78
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.61 E-value=1.8e+02 Score=19.09 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=21.7
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCc
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIR 93 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~ 93 (193)
..+..+..-+.....+.++++|++.|+.
T Consensus 40 ~~~~~v~i~v~~~~~~~~~~~L~~~G~~ 67 (72)
T cd04883 40 EDNKILVFRVQTMNPRPIIEDLRRAGYE 67 (72)
T ss_pred CCeEEEEEEEecCCHHHHHHHHHHCCCe
Confidence 4466677667666778999999999874
No 79
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=24.59 E-value=2.1e+02 Score=18.82 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHh
Q 029477 76 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 149 (193)
Q Consensus 76 rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va 149 (193)
.++-+.++.++|.+.|+.-.-+. .....|.+++++++.+++++++.+..
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~~-------------------------~Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQTA-------------------------DSHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEE-------------------------cCccEEEEEEcHHHHHHHHHHHHHHh
Confidence 45667788888888877653111 02257899999999999999988764
No 80
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=23.65 E-value=1.9e+02 Score=24.50 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEee
Q 029477 64 PDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDV 100 (193)
Q Consensus 64 ~~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V 100 (193)
|......+-|++++++++.+.+.+-++|+..+.....
T Consensus 72 ~~~~l~l~~al~k~~~~e~il~k~tELGV~~i~p~~s 108 (234)
T PRK11713 72 PPLRLTLAQALPKGDRLELILQKATELGVSAIIPLIS 108 (234)
T ss_pred CCCeEEEEEeecCCccHHHHHHHHHHhCcCeEEEEEe
Confidence 3446888999999999999999999999999887743
No 81
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=22.94 E-value=91 Score=23.79 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=18.4
Q ss_pred cCccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 134 SKDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 134 ~de~ve~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
.++.++++.+.+.++ ||.||++|+-
T Consensus 57 ~~d~~~~~~~~l~~a-------D~iI~~sP~y 81 (152)
T PF03358_consen 57 IPDDVQELYDKLKEA-------DGIIFASPVY 81 (152)
T ss_dssp TSHHHHHHHHHHHHS-------SEEEEEEEEB
T ss_pred CcHHHHHHHhceecC-------CeEEEeecEE
Confidence 456677777776554 7999999963
No 82
>PRK03926 mevalonate kinase; Provisional
Probab=22.92 E-value=4.9e+02 Score=22.38 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 029477 76 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 155 (193)
Q Consensus 76 rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~G 155 (193)
....++++++.+++.|.-|..+ .|-|-. | -+..+++++..+++.+.+.+.
T Consensus 233 ~~p~l~~l~~~~~~~ga~ga~l---SGaG~G-g-------------------~v~~l~~~~~~~~~~~~~~~~------- 282 (302)
T PRK03926 233 STKELSELIYAARTAGALGAKI---TGAGGG-G-------------------CMVALAAPEKQSEVATAIKIA------- 282 (302)
T ss_pred CCHHHHHHHHHHHhCCCceeee---ccCCCC-C-------------------EEEEEeccccHHHHHHHHHhc-------
Confidence 4566778888888888777654 344431 2 233556677788887776643
Q ss_pred CeEEEEEecC-ceEEc
Q 029477 156 DGKIFLVPVS-DVIRV 170 (193)
Q Consensus 156 DGkIFV~pVe-eavrI 170 (193)
.+.+|++.++ +-++|
T Consensus 283 ~~~~~~~~~~~~G~~i 298 (302)
T PRK03926 283 GGKPIITKITDEGLRI 298 (302)
T ss_pred CCeEEEEecCCCeeEE
Confidence 2688999885 45555
No 83
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=22.64 E-value=2.1e+02 Score=23.02 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=26.6
Q ss_pred eeEEEEEEEcCccHHHHHHHHHHHhcc-CCCCCeEEEEEecC
Q 029477 125 AKVKMEIVVSKDQVEGVIDKIMEEART-GEIGDGKIFLVPVS 165 (193)
Q Consensus 125 ~KvkIeIVV~de~ve~VIeaI~~va~T-G~~GDGkIFV~pVe 165 (193)
.++...-+.+++..+..+......+.. -..|||.||.+|+-
T Consensus 28 ~nv~~v~~~~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~ 69 (143)
T COG2893 28 ENVEAVDFVPGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLF 69 (143)
T ss_pred hceEEEEeecCCChHHHHHHHHHHHHhhcCCCCcEEEEEecC
Confidence 445666666775655555555555444 45569999999865
No 84
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.51 E-value=2.4e+02 Score=18.60 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.0
Q ss_pred eEEEEEEE--CCCCHHHHHHHHHhCCCceEEEE
Q 029477 68 FYKVEAIL--RPWRVQQVSSALLNMGIRGVTVS 98 (193)
Q Consensus 68 MKkIeAII--rp~kld~V~eAL~e~Gv~G~TV~ 98 (193)
||+|...+ +|+-+.+|.+.|.+.|+.=..+.
T Consensus 1 ~~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 1 IKQLSVFLENKPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred CEEEEEEEcCCCChHHHHHHHHHHCCCCEEEEE
Confidence 57777777 78999999999999998655553
No 85
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=22.33 E-value=1.7e+02 Score=25.86 Aligned_cols=16 Identities=13% Similarity=0.244 Sum_probs=9.7
Q ss_pred EEEEcCccHHHHHHHH
Q 029477 130 EIVVSKDQVEGVIDKI 145 (193)
Q Consensus 130 eIVV~de~ve~VIeaI 145 (193)
++.+.+|+.+.+.+.|
T Consensus 206 ~v~~~~e~a~k~~kLi 221 (241)
T COG0217 206 TVELDDEDAEKLEKLI 221 (241)
T ss_pred ceecCHHHHHHHHHHH
Confidence 3445567777766654
No 86
>PRK00110 hypothetical protein; Validated
Probab=21.37 E-value=1.1e+02 Score=26.92 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=14.0
Q ss_pred cceeEEEEEEEcCccHHHHHHHHHH
Q 029477 123 FVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 123 ~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
+.|+..+++ ++++.+.+.+.|-.
T Consensus 199 ~~P~~~v~l--~~e~~~~~~~li~~ 221 (245)
T PRK00110 199 MIPQNTVEL--DEETAEKLLKLIDA 221 (245)
T ss_pred EecCCCccc--CHHHHHHHHHHHHH
Confidence 677777665 66666665544433
No 87
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.34 E-value=1.6e+02 Score=27.35 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=60.0
Q ss_pred EEEEEEECCCC--HHHHHHHHHhCCCceEEEEeeeeecccCCCceeccccccccccccee-EEEEEEEcCccHHHHHHHH
Q 029477 69 YKVEAILRPWR--VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAK-VKMEIVVSKDQVEGVIDKI 145 (193)
Q Consensus 69 KkIeAIIrp~k--ld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~K-vkIeIVV~de~ve~VIeaI 145 (193)
++.++...|-| +..+.+.+++..++||..+...|+-. +- . ...|+ ..-+|--+...+.+|.+.|
T Consensus 216 ~l~e~LL~PTrIYvk~vL~l~~~~~vkg~AHITGGG~~e--Nl-~----------Rv~p~~l~a~id~~~~~~p~iF~~i 282 (345)
T COG0150 216 TLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGGGFVE--NL-P----------RVLPEGLGAVIDKPSWPPPPIFKWL 282 (345)
T ss_pred CHHHHhcCCceeehHHHHHHHhcCCcceEEEecCCChhh--hC-h----------hhcCccceEEEcCCCCCCcHHHHHH
Confidence 55556666654 46688889888999988766555542 21 1 12332 5555555666688999999
Q ss_pred HHHhcc--------CCCCCeEEEEEecCceEEc
Q 029477 146 MEEART--------GEIGDGKIFLVPVSDVIRV 170 (193)
Q Consensus 146 ~~va~T--------G~~GDGkIFV~pVeeavrI 170 (193)
.+..+- =+.|=|.+++.|=+++-++
T Consensus 283 ~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~ 315 (345)
T COG0150 283 QKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKA 315 (345)
T ss_pred HHhcCCCHHHHHHHhcCccceEEEEcHHHHHHH
Confidence 888743 3689999999987765444
No 88
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=21.01 E-value=5e+02 Score=21.79 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=31.3
Q ss_pred eeEEEEEEE-cCccHHHHHHHHHHHhccCCCCCeEEEEEecCc
Q 029477 125 AKVKMEIVV-SKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSD 166 (193)
Q Consensus 125 ~KvkIeIVV-~de~ve~VIeaI~~va~TG~~GDGkIFV~pVee 166 (193)
.-..+.+.+ ..+..+++++.|.++|.. -+.++|.||+.
T Consensus 130 SsA~iti~a~~~e~l~ea~~~l~ev~~e----K~Ll~I~pV~~ 168 (170)
T COG2061 130 SSARITIIAVGKEKLDEALRRLKEVAME----KDLLLISPVDI 168 (170)
T ss_pred cceeEEEEEcChhHHHHHHHHHHHHHhh----cCcEEEEeeee
Confidence 356777777 788899999999999983 46999999974
No 89
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.70 E-value=2.7e+02 Score=26.89 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCCCCCCeEEEEEEECCCCHHHHHHHHHhC-----CCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcC
Q 029477 61 DYIPDSKFYKVEAILRPWRVQQVSSALLNM-----GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK 135 (193)
Q Consensus 61 ~~~~~~~MKkIeAIIrp~kld~V~eAL~e~-----Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~d 135 (193)
.++|. -++|.||.+|.+....++.+.+. .+.-+-+.+|.+-|++.-.. ...+.. +..+.+-.-.+.-
T Consensus 347 ~~~~~--~~rIvaifQPHrySRt~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g-~~~~~~-----l~~~i~~~~~~~~ 418 (459)
T COG0773 347 QKVPG--GKRIVAVFQPHRYSRTRDLLDDFAKALSDADEVILLDVYAAGEEPIEG-DVSSED-----LAEKIRQPGHVDV 418 (459)
T ss_pred HhcCC--CceEEEEECCCchHhHHHHHHHHHHHHhcCCEEEEecccccCCCCCcC-CccHHH-----HHHHhhcCCcccC
Confidence 34454 58999999999998888877776 67888899999999884100 011111 2222222111115
Q ss_pred ccHHHHHHHHHHHhccCCCCCeEE
Q 029477 136 DQVEGVIDKIMEEARTGEIGDGKI 159 (193)
Q Consensus 136 e~ve~VIeaI~~va~TG~~GDGkI 159 (193)
++.+.+++.|...++ +||=.+
T Consensus 419 ~~~~~~~~~l~~~~~---~gD~il 439 (459)
T COG0773 419 PDLDDLVELLAKVAQ---PGDVIL 439 (459)
T ss_pred CCHHHHHHHHHhhCC---CCCEEE
Confidence 678888888888887 455333
No 90
>PRK12378 hypothetical protein; Provisional
Probab=20.45 E-value=1.2e+02 Score=26.46 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=28.8
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 71 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 71 IeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
++.+..|..+..|+++|.+.|+.-. ..++ .+.|+..+++ ++++.+.+.+.|-.
T Consensus 168 ~~i~t~p~~~~~v~~~L~~~g~~~~-------------------~sei---~~~P~~~v~l--~~e~~~~~~~li~~ 220 (235)
T PRK12378 168 ITVYTDPTDFHKVKKALEAAGIEFL-------------------VAEL---EMIPQNPVEL--SGEDLEQFEKLLDA 220 (235)
T ss_pred EEEEECHHHHHHHHHHHHHcCCCce-------------------eeEE---EEecCCCccC--CHHHHHHHHHHHHH
Confidence 5555666666666666666555211 0111 3567777664 66666665555433
No 91
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=20.09 E-value=4e+02 Score=23.23 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCCe
Q 029477 78 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDG 157 (193)
Q Consensus 78 ~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~GDG 157 (193)
..++++++++++.|.-|..++ |-| . .+..+++++...+.+..+.+.... ...++
T Consensus 234 p~l~~i~~~~~~~Ga~g~~lS---GsG---p-------------------tv~al~~~~~~~~~~~~~~~~~~~-~~~~~ 287 (302)
T TIGR00191 234 PNLFKIKQAALEKGAYGITIS---GSG---P-------------------TILAMADEEFAEQKEQDLLEVLHK-QGIEG 287 (302)
T ss_pred CCHHHHHHHHHHCCCeEEEEE---chh---h-------------------hheEEecchhhHHHHHHHHHHHHh-cCCCe
Confidence 457899999999998887664 434 1 133456655544444444433332 23478
Q ss_pred EEEEEecCc
Q 029477 158 KIFLVPVSD 166 (193)
Q Consensus 158 kIFV~pVee 166 (193)
.++++.+++
T Consensus 288 ~~~~~~~~~ 296 (302)
T TIGR00191 288 TVHVLDFDN 296 (302)
T ss_pred EEEEcccCC
Confidence 999999875
No 92
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.03 E-value=1.5e+02 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=15.8
Q ss_pred EECCCCHHHHHHHHHhCCCc
Q 029477 74 ILRPWRVQQVSSALLNMGIR 93 (193)
Q Consensus 74 IIrp~kld~V~eAL~e~Gv~ 93 (193)
.++-+..+.+.+.|+++|+.
T Consensus 44 ~~~ve~~~~~~~~L~~~G~~ 63 (65)
T cd04882 44 IFRTEDIEKAIEVLQERGVE 63 (65)
T ss_pred EEEeCCHHHHHHHHHHCCce
Confidence 44444599999999999974
Done!