Query 029477
Match_columns 193
No_of_seqs 123 out of 1127
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 22:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o66_A PII protein; regulation 100.0 5E-42 1.7E-46 271.8 13.9 133 57-192 2-134 (135)
2 3ncq_A Nitrogen regulatory pro 100.0 3.6E-39 1.2E-43 250.6 15.3 113 68-181 1-113 (119)
3 3mhy_A PII-like protein PZ; PI 100.0 5E-39 1.7E-43 246.5 13.3 112 68-180 1-112 (112)
4 4aff_A Nitrogen regulatory pro 100.0 3.9E-39 1.3E-43 249.2 12.3 112 68-180 1-112 (116)
5 3l7p_A Putative nitrogen regul 100.0 4.5E-39 1.6E-43 248.4 11.0 112 68-180 3-115 (115)
6 3t9z_A GLNK3, nitrogen regulat 100.0 1.5E-38 5.2E-43 246.7 12.5 112 68-180 1-112 (118)
7 1hwu_A PII protein; herbaspiri 100.0 2.6E-36 8.9E-41 229.9 12.8 112 68-180 1-112 (112)
8 2ns1_B Nitrogen regulatory pro 100.0 3.9E-36 1.3E-40 230.9 12.9 113 67-180 4-116 (116)
9 2j9c_A GLNK1, hypothetical nit 100.0 9.5E-36 3.2E-40 229.9 14.7 114 68-182 3-116 (119)
10 3bzq_A Nitrogen regulatory pro 100.0 3.9E-36 1.3E-40 229.5 12.1 113 67-180 2-114 (114)
11 1vfj_A Nitrogen regulatory pro 100.0 8.2E-36 2.8E-40 228.6 13.0 114 68-182 1-114 (116)
12 2eg2_A Nitrogen regulatory pro 100.0 5.4E-36 1.8E-40 228.4 11.5 112 68-180 1-112 (112)
13 2gw8_A PII signal transduction 100.0 9E-36 3.1E-40 228.0 11.4 113 67-180 2-114 (114)
14 3ce8_A Putative PII-like nitro 99.9 8.4E-26 2.9E-30 176.1 10.1 100 62-171 16-120 (120)
15 3dfe_A Putative PII-like signa 99.9 3.8E-24 1.3E-28 164.3 9.1 98 67-171 5-103 (111)
16 2cz4_A Hypothetical protein TT 99.9 2.6E-23 8.8E-28 161.3 9.0 96 59-165 10-111 (119)
17 3m05_A Uncharacterized protein 99.8 7.7E-19 2.6E-23 135.7 10.3 87 66-170 4-114 (114)
18 1o51_A Hypothetical protein TM 98.2 4.9E-06 1.7E-10 63.7 7.1 90 67-165 12-109 (114)
19 2dcl_A Hypothetical UPF0166 pr 97.9 5.6E-05 1.9E-09 58.9 8.9 96 67-172 8-111 (127)
20 2gx8_A NIF3-related protein; s 95.7 0.044 1.5E-06 49.7 9.3 81 67-148 160-247 (397)
21 2nyd_A UPF0135 protein SA1388; 94.5 0.018 6.2E-07 51.7 3.0 79 68-147 135-220 (370)
22 3hlu_A Uncharacterized protein 89.0 1.4 4.8E-05 31.9 6.8 71 77-169 15-85 (96)
23 3s1t_A Aspartokinase; ACT doma 64.5 49 0.0017 25.9 9.2 86 68-154 59-162 (181)
24 2vd3_A ATP phosphoribosyltrans 58.1 15 0.0005 31.9 5.4 37 65-101 249-285 (289)
25 2fzv_A Putative arsenical resi 53.7 1E+02 0.0035 26.0 10.4 23 135-164 111-133 (279)
26 3s5o_A 4-hydroxy-2-oxoglutarat 50.9 6.3 0.00021 33.7 1.8 89 75-165 32-120 (307)
27 3l21_A DHDPS, dihydrodipicolin 50.8 5.5 0.00019 34.1 1.4 88 75-164 33-120 (304)
28 1q9u_A Uncharacterized protein 49.8 19 0.00065 26.4 4.2 56 80-147 19-74 (130)
29 3m5v_A DHDPS, dihydrodipicolin 49.7 6.3 0.00021 33.5 1.6 89 75-165 25-114 (301)
30 1nh8_A ATP phosphoribosyltrans 49.4 18 0.00062 31.6 4.5 37 65-101 264-300 (304)
31 3c19_A Uncharacterized protein 49.3 67 0.0023 26.1 7.7 65 66-148 10-79 (186)
32 2vd3_A ATP phosphoribosyltrans 49.0 56 0.0019 28.1 7.6 75 66-168 214-288 (289)
33 3h5d_A DHDPS, dihydrodipicolin 48.1 11 0.00037 32.3 2.9 89 75-165 25-114 (311)
34 3flu_A DHDPS, dihydrodipicolin 47.9 6.1 0.00021 33.6 1.2 88 75-164 25-112 (297)
35 1nh8_A ATP phosphoribosyltrans 47.2 64 0.0022 28.1 7.7 74 66-168 230-303 (304)
36 3qze_A DHDPS, dihydrodipicolin 46.3 6 0.00021 34.0 1.0 89 75-165 41-129 (314)
37 4f3q_A Transcriptional regulat 46.1 14 0.00047 31.4 3.2 23 123-147 204-226 (247)
38 2ehh_A DHDPS, dihydrodipicolin 45.9 8.8 0.0003 32.4 2.0 88 75-164 18-105 (294)
39 3qfe_A Putative dihydrodipicol 45.2 5.7 0.0002 34.2 0.7 88 75-164 29-116 (318)
40 3tak_A DHDPS, dihydrodipicolin 45.1 5.2 0.00018 33.8 0.4 88 75-164 19-106 (291)
41 3si9_A DHDPS, dihydrodipicolin 44.6 4.9 0.00017 34.6 0.2 89 75-165 40-128 (315)
42 2jsx_A Protein NAPD; TAT, proo 44.1 84 0.0029 22.4 8.5 68 69-164 8-75 (95)
43 3fkr_A L-2-keto-3-deoxyarabona 43.6 6.3 0.00022 33.7 0.7 88 75-164 26-113 (309)
44 2cz9_A Probable galactokinase; 42.8 44 0.0015 27.8 5.8 64 78-164 281-344 (350)
45 3dz1_A Dihydrodipicolinate syn 42.5 8.1 0.00028 33.1 1.2 87 75-164 26-112 (313)
46 2yxg_A DHDPS, dihydrodipicolin 42.1 10 0.00035 31.9 1.8 88 75-164 18-105 (289)
47 3a5f_A Dihydrodipicolinate syn 42.1 9.3 0.00032 32.2 1.5 88 75-164 19-106 (291)
48 1o5k_A DHDPS, dihydrodipicolin 41.9 9.5 0.00032 32.5 1.5 88 75-164 30-117 (306)
49 3na8_A Putative dihydrodipicol 41.8 5.2 0.00018 34.4 -0.1 89 75-165 42-130 (315)
50 2wkj_A N-acetylneuraminate lya 41.7 9.2 0.00031 32.6 1.4 88 75-164 29-116 (303)
51 3b4u_A Dihydrodipicolinate syn 41.7 8.5 0.00029 32.6 1.2 88 75-164 21-108 (294)
52 2dt9_A Aspartokinase; protein- 41.4 77 0.0026 24.0 6.7 83 68-152 59-159 (167)
53 4dpp_A DHDPS 2, dihydrodipicol 41.1 10 0.00035 33.6 1.7 85 78-164 80-164 (360)
54 3daq_A DHDPS, dihydrodipicolin 41.1 9.8 0.00033 32.2 1.5 88 75-164 20-107 (292)
55 3cpr_A Dihydrodipicolinate syn 40.6 11 0.00038 32.1 1.8 88 75-164 34-121 (304)
56 1f6k_A N-acetylneuraminate lya 40.6 12 0.0004 31.7 1.9 88 75-164 21-109 (293)
57 1pie_A Galactokinase; galactos 40.0 33 0.0011 29.9 4.8 70 77-169 344-414 (419)
58 1j3m_A The conserved hypotheti 39.3 25 0.00086 25.8 3.4 77 80-171 16-92 (129)
59 1xky_A Dihydrodipicolinate syn 38.8 10 0.00035 32.3 1.3 88 75-164 30-117 (301)
60 1h3d_A ATP-phosphoribosyltrans 37.8 21 0.00073 30.9 3.1 35 67-101 261-295 (299)
61 3rpe_A MDAB, modulator of drug 37.2 1.2E+02 0.0043 24.4 7.6 26 67-92 24-61 (218)
62 3dfe_A Putative PII-like signa 36.9 44 0.0015 24.6 4.4 29 124-152 4-32 (111)
63 3lh2_S 4E10_1VI7A_S0_002_N (T8 36.5 11 0.00038 25.3 0.9 29 122-150 37-65 (76)
64 2ojp_A DHDPS, dihydrodipicolin 36.2 9.1 0.00031 32.3 0.5 88 75-164 19-106 (292)
65 3eb2_A Putative dihydrodipicol 36.1 5.4 0.00019 34.0 -0.9 89 75-165 22-110 (300)
66 2re1_A Aspartokinase, alpha an 35.8 1.1E+02 0.0036 23.2 6.6 82 68-150 66-165 (167)
67 2v9d_A YAGE; dihydrodipicolini 35.1 11 0.00037 32.9 0.8 88 75-164 49-136 (343)
68 2r8w_A AGR_C_1641P; APC7498, d 35.0 11 0.00037 32.7 0.8 88 75-164 52-139 (332)
69 3gx1_A LIN1832 protein; APC633 34.6 40 0.0014 25.2 3.9 37 128-164 34-70 (130)
70 3rrk_A V-type ATPase 116 kDa s 34.1 23 0.00079 30.2 2.8 38 61-98 7-44 (357)
71 3e96_A Dihydrodipicolinate syn 32.6 8.8 0.0003 32.9 -0.2 88 75-165 30-117 (316)
72 1hwu_A PII protein; herbaspiri 32.3 45 0.0016 23.9 3.8 25 127-151 2-26 (112)
73 2eg2_A Nitrogen regulatory pro 32.0 46 0.0016 23.9 3.8 25 127-151 2-26 (112)
74 2vc6_A MOSA, dihydrodipicolina 31.8 10 0.00035 32.0 0.1 88 75-164 18-105 (292)
75 3bzq_A Nitrogen regulatory pro 31.4 48 0.0016 23.8 3.8 26 126-151 3-28 (114)
76 2ns1_B Nitrogen regulatory pro 31.2 48 0.0016 24.1 3.8 26 126-151 5-30 (116)
77 3d0c_A Dihydrodipicolinate syn 31.2 11 0.00038 32.3 0.2 87 75-164 30-116 (314)
78 2j9c_A GLNK1, hypothetical nit 30.7 49 0.0017 24.2 3.8 25 127-151 4-28 (119)
79 2gw8_A PII signal transduction 30.5 50 0.0017 23.8 3.8 25 127-151 4-28 (114)
80 1vfj_A Nitrogen regulatory pro 30.4 51 0.0017 23.8 3.8 25 127-151 2-26 (116)
81 3mhy_A PII-like protein PZ; PI 30.2 56 0.0019 23.7 4.0 25 127-151 2-26 (112)
82 1w3i_A EDA, 2-keto-3-deoxy glu 29.8 32 0.0011 28.9 2.9 86 75-165 17-102 (293)
83 2rfg_A Dihydrodipicolinate syn 29.8 10 0.00036 32.1 -0.2 88 75-164 18-105 (297)
84 3ncq_A Nitrogen regulatory pro 28.0 58 0.002 24.1 3.8 25 127-151 2-26 (119)
85 4aff_A Nitrogen regulatory pro 27.9 59 0.002 23.9 3.8 25 127-151 2-26 (116)
86 2nuw_A 2-keto-3-deoxygluconate 27.4 30 0.001 29.0 2.3 86 75-165 17-102 (288)
87 3t9z_A GLNK3, nitrogen regulat 27.2 61 0.0021 24.0 3.8 25 127-151 2-26 (118)
88 2r91_A 2-keto-3-deoxy-(6-phosp 26.2 26 0.00087 29.4 1.6 85 75-164 16-100 (286)
89 2a2c_A N-acetylgalactosamine k 25.7 1.2E+02 0.0043 26.9 6.2 52 77-151 399-450 (478)
90 1pdo_A Mannose permease; phosp 25.2 76 0.0026 23.4 4.0 32 133-164 36-67 (135)
91 2cz4_A Hypothetical protein TT 25.0 83 0.0028 23.2 4.2 28 124-151 23-50 (119)
92 2o66_A PII protein; regulation 24.2 73 0.0025 24.1 3.8 29 124-152 11-39 (135)
93 3l7p_A Putative nitrogen regul 24.2 72 0.0024 23.4 3.6 24 127-150 4-27 (115)
94 3ab4_A Aspartokinase; aspartat 23.8 2.4E+02 0.0082 24.7 7.6 84 68-152 307-408 (421)
95 2dtj_A Aspartokinase; protein- 23.6 2.5E+02 0.0084 21.4 8.2 87 64-151 54-158 (178)
96 2nxc_A L11 mtase, ribosomal pr 23.6 39 0.0013 27.1 2.2 39 68-106 1-41 (254)
97 2zvy_A Chemotaxis protein MOTB 23.0 1.1E+02 0.0037 24.1 4.7 58 76-140 117-174 (183)
98 3gdw_A Sigma-54 interaction do 22.7 79 0.0027 23.9 3.7 34 131-164 37-72 (139)
99 3lfh_A Manxa, phosphotransfera 22.1 98 0.0034 23.4 4.1 33 132-164 37-70 (144)
100 4go7_X Aspartokinase; transfer 21.2 75 0.0026 25.6 3.5 92 68-160 78-187 (200)
101 2gjf_A Designed protein; proca 21.0 1.5E+02 0.0051 19.5 4.5 29 69-97 47-75 (78)
102 1x8d_A Hypothetical protein YI 20.9 56 0.0019 23.7 2.4 19 81-99 27-45 (104)
103 2q62_A ARSH; alpha/beta, flavo 20.6 3.4E+02 0.012 22.0 8.8 24 135-165 86-109 (247)
104 1o51_A Hypothetical protein TM 20.2 85 0.0029 23.1 3.3 35 67-101 74-109 (114)
No 1
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=100.00 E-value=5e-42 Score=271.82 Aligned_cols=133 Identities=86% Similarity=1.277 Sum_probs=105.1
Q ss_pred ecCCCCCCCCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCc
Q 029477 57 QSSPDYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKD 136 (193)
Q Consensus 57 ~~~~~~~~~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de 136 (193)
|++|+|+|+..||+|+|||||+++++|++||.++|++|+|+++|+|+|+|+|.++.|+|.+|..+++.||++|+++|+|+
T Consensus 2 ~~~~~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de 81 (135)
T 2o66_A 2 QISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKD 81 (135)
T ss_dssp --CCSCSSCCSEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGG
T ss_pred ccCcCcCCCCCeEEEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHH
Confidence 67999999999999999999999999999999999999999999999999998888999998753589999999999999
Q ss_pred cHHHHHHHHHHHhccCCCCCeEEEEEecCceEEcccCCcchhhhhccCCccccccC
Q 029477 137 QVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMAGGWSDISSA 192 (193)
Q Consensus 137 ~ve~VIeaI~~va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al~~~~~~~~~~~~ 192 (193)
++++++++|.++++||++|||+|||+||++++||||||+|++||+|+| ||.++
T Consensus 82 ~ve~Vv~~I~~~~~tg~~GdGkIFV~pVe~~vrIrTge~g~~al~~~~---~~~~~ 134 (135)
T 2o66_A 82 QVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERGEKAEKMTG---DMLSP 134 (135)
T ss_dssp GHHHHHHHHHHHHCCSSTTCCEEEEEEECEEEETTTCCBGGGTC------------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEEEhHHEEEecCCCccHHHHhhcc---CCcCC
Confidence 999999999999999999999999999999999999999999999999 77543
No 2
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=100.00 E-value=3.6e-39 Score=250.59 Aligned_cols=113 Identities=47% Similarity=0.736 Sum_probs=109.9
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++|+|+|+|+|.++.|+|.++..+ +.||++||++|+|+++++++++|.+
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~-~~pK~kieivV~de~ve~vv~~I~~ 79 (119)
T 3ncq_A 1 MKKIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVT-LLPKVKLEIVVKDDAVEEVIGLIVN 79 (119)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCC-CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeec-ccceEEEEEEEcHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998899999999884 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAER 181 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al~ 181 (193)
+|+||++|||||||+||++++||||||+|++||.
T Consensus 80 ~a~TG~~GDGkIFV~~Ve~~vrIrTge~g~~a~~ 113 (119)
T 3ncq_A 80 SAFTGSPGDGKIFIIPVEDVVRIRTGERGDDSLE 113 (119)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBSGGGC-
T ss_pred HhcCCCCCCCEEEEEEhHheEEecCCCccHHHHh
Confidence 9999999999999999999999999999999985
No 3
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=100.00 E-value=5e-39 Score=246.51 Aligned_cols=112 Identities=46% Similarity=0.788 Sum_probs=101.0
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++|+|+|+|+|.++.|+|.++.. ++.||++||++|+|+++++++++|.+
T Consensus 1 MK~I~aIIr~~kl~~vk~AL~~~G~~g~Tv~~v~G~G~q~g~~~~yrG~~~~~-~~~pK~kieivV~d~~v~~vv~~I~~ 79 (112)
T 3mhy_A 1 MKLVMAIIKPFKLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSV-SFLPKVKVEVAVSDDQYEQVVEAIQK 79 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTCCCEEEEEEEEECTTTTCC---------C-CCEEEEEEEEEECTTTHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCeEEEEEEEeEccccCCcceeccceeee-cccceEEEEEEEchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999889999999987 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+++||++|||||||+||++++||||||+|++||
T Consensus 80 ~~~tg~~GdGkIfV~~v~~~~rirtge~g~~a~ 112 (112)
T 3mhy_A 80 AANTGRIGDGKIFVLDIAQAVRIRTGETNTEAL 112 (112)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBGGGTC
T ss_pred HhcCCCCCCeEEEEEEhHheEEecCCCcccccC
Confidence 999999999999999999999999999999996
No 4
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=100.00 E-value=3.9e-39 Score=249.15 Aligned_cols=112 Identities=56% Similarity=0.903 Sum_probs=104.5
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++|+|+|+|+|.++.|+|.++..+ +.||++||++|+|+++++++++|.+
T Consensus 1 MK~I~AIIrp~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~-~~pK~kieivV~d~~ve~vv~~I~~ 79 (116)
T 4aff_A 1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLEIVVEDAQVDTVIDKIVA 79 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCC-CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeec-ccceEEEEEEEcHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998889999999884 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+|+||++|||||||+||++++||||||+|++||
T Consensus 80 ~a~Tg~~GDGkIFV~~Ve~~vrIrtge~g~~al 112 (116)
T 4aff_A 80 AARTGENGDGKIFVSPVDQTIRIRTGEKNADAI 112 (116)
T ss_dssp HHCCSSTTCEEEEEEECSCCBCTTTCCBTHHHH
T ss_pred HhcCCCCCCeEEEEEEhHHeEEecCCCchHHHH
Confidence 999999999999999999999999999999999
No 5
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=100.00 E-value=4.5e-39 Score=248.43 Aligned_cols=112 Identities=44% Similarity=0.739 Sum_probs=81.2
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCC-ceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGI-RGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 146 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv-~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~ 146 (193)
||+|+|||||+++++|++||.++|+ +|+|+++|+|+|+|+|.++.|+|.++.. ++.||++||++|+|+++++++++|+
T Consensus 3 MKkI~AIIrp~kl~~Vk~AL~~~G~d~g~Tv~~V~G~G~q~g~~~~yrG~~~~~-~~~pk~kieivV~d~~ve~vv~~I~ 81 (115)
T 3l7p_A 3 MKKIEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGNQRGYTEYVRGQKITP-TLLAKVKVEIVAHDAAVEEMITTIS 81 (115)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHTCGGGEEEEEEEEEC-----------------CEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCCCccEEEEEEEeEcccCCCceeeccceeee-cccceEEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999888999999987 4999999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 147 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 147 ~va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
++++||++|||||||+||++++||||||+|++||
T Consensus 82 ~~a~tg~~GDGkIFV~~ve~~vrIrtge~g~~al 115 (115)
T 3l7p_A 82 QAVKTGEVGDGKIFVSPVDEIVRIRTGERDGDAI 115 (115)
T ss_dssp HHHCCC----CEEEEEECSEEEEC----------
T ss_pred HHhcCCCCCCcEEEEEEhHheEEecCCCcccccC
Confidence 9999999999999999999999999999999996
No 6
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=100.00 E-value=1.5e-38 Score=246.72 Aligned_cols=112 Identities=39% Similarity=0.673 Sum_probs=93.7
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++|+|+|+|+|.++.|+|.++..+ +.||++||++|+|+++++++++|.+
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~-~~pK~~ieivV~de~ve~Vv~~I~~ 79 (118)
T 3t9z_A 1 MKMVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVD-LLQKTKVEVVVSDDAVDEVVEAIVS 79 (118)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEEC------------------CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeec-ccceEEEEEEEChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998889999999884 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+++||++|||||||+||++++||||||+|+.|.
T Consensus 80 ~a~TG~~GDGkIFV~~Ve~~vrIrTge~g~~~~ 112 (118)
T 3t9z_A 80 SARTGKFGDGRIFVIPVEKSVKIRTGDEEVAAA 112 (118)
T ss_dssp HHCCSSTTCCEEEEEECCEEEETTTCCEEECCC
T ss_pred HhcCCCCCCeEEEEEEhHHeEEeccCCcccccc
Confidence 999999999999999999999999999999875
No 7
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=100.00 E-value=2.6e-36 Score=229.87 Aligned_cols=112 Identities=46% Similarity=0.816 Sum_probs=96.9
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++++|+|++++..+.|+|.++.. ++.||++|+++|+|+++++++++|.+
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~-~~~~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 1hwu_A 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVV-DFLPKVKIEVVVDDKVVEQAVDAIIK 79 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCC-CEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccc-cccceEEEEEEEcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888899999887 48999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+++||++|||+|||+||++++||||||+|++||
T Consensus 80 ~~~tg~~GdGkiFV~~V~~~~rirtge~g~~a~ 112 (112)
T 1hwu_A 80 AARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 (112)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBGGGTC
T ss_pred HhcCCCCCCEEEEEEEhHHEEEecCCCcCcccC
Confidence 999999999999999999999999999999996
No 8
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=100.00 E-value=3.9e-36 Score=230.86 Aligned_cols=113 Identities=44% Similarity=0.781 Sum_probs=109.5
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 146 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~ 146 (193)
.||+|+|||||+++++|++||.++|++|+|+++++|+|++++..+.|+|.++..+ +.||++||++|+|+++++++++|+
T Consensus 4 ~Mk~I~aIIr~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~-~~~k~~ieivv~de~v~~vv~~I~ 82 (116)
T 2ns1_B 4 SMKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVN-FLPKVKIDVAIADDQLDEVIDIVS 82 (116)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCC-CEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred ceEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecc-cccEEEEEEEEcHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999998888999998874 899999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 147 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 147 ~va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
++++||++|||+|||+||++++||||||+|++||
T Consensus 83 ~~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 116 (116)
T 2ns1_B 83 KAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 116 (116)
T ss_dssp HHHCCSSTTCCEEEEEEESCCBCTTTCCBGGGGC
T ss_pred HHhcCCCCCCEEEEEEEhHHEEEecCCCcCcccC
Confidence 9999999999999999999999999999999996
No 9
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=100.00 E-value=9.5e-36 Score=229.86 Aligned_cols=114 Identities=50% Similarity=0.767 Sum_probs=110.3
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++++|+|++++.++.|+|.++.. ++.||++||++|+|+++++++++|.+
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~-~~~pK~~ieivv~de~v~~vv~~I~~ 81 (119)
T 2j9c_A 3 MKKVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIV-DLIPKVKIELVVKEEDVDNVIDIICE 81 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSS-SCEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeecccccc-ccCcEEEEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999878899999887 59999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhhhc
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERM 182 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al~~ 182 (193)
+++||++|||+|||+||++++||||||+|++||+-
T Consensus 82 ~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~~~ 116 (119)
T 2j9c_A 82 NARTGNPGDGKIFVIPVERVVRVRTKEEGKEALLE 116 (119)
T ss_dssp HHCCSSTTCEEEEEEEECEEEETTTCCBSGGGGSC
T ss_pred HhcCCCCCCEEEEEEEhHHEEEecCCCcchhHhhc
Confidence 99999999999999999999999999999999963
No 10
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=100.00 E-value=3.9e-36 Score=229.53 Aligned_cols=113 Identities=44% Similarity=0.805 Sum_probs=96.2
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 146 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~ 146 (193)
.||+|+|||||+++++|++||.++|++|+|+++++|+|+++|..+.|+|.++.. ++.||++|+++|+|+++++++++|.
T Consensus 2 ~Mk~I~aIIr~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~-~~~~k~~ieivv~de~v~~vv~~I~ 80 (114)
T 3bzq_A 2 HMKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSV-DFVPKVRIEVVVDDSIVDKVVDSIV 80 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC----------------CEEEEEEEEEEEETTTHHHHHHHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceecccccc-ccccEEEEEEEECHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999998778899999876 4899999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 147 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 147 ~va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
++++||++|||+|||+||++++||||||+|++||
T Consensus 81 ~~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 114 (114)
T 3bzq_A 81 RAARTGKIGDGKVWVSPVDTIVRVRTGERGHDAL 114 (114)
T ss_dssp HHHCCSSTTCCEEEEEEESCCBCTTTCCBGGGGC
T ss_pred HHhcCCCCCCEEEEEEEhHHeEEecCCCcCcccC
Confidence 9999999999999999999999999999999996
No 11
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=100.00 E-value=8.2e-36 Score=228.61 Aligned_cols=114 Identities=39% Similarity=0.629 Sum_probs=110.2
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++++|+|++++..+.|+|.++.. ++.||.+|+++|+|+++++++++|++
T Consensus 1 Mk~I~aII~~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~-~~~~k~~ieivv~de~v~~vv~~I~~ 79 (116)
T 1vfj_A 1 MKLIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKM-ELHEKVRLEIGVSEPFVKPTVEAILK 79 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCST-TCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeee-ccCceEEEEEEEcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888899999887 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhhhc
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERM 182 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al~~ 182 (193)
+++||++|||+|||+||++++||||||+|++||+.
T Consensus 80 ~~~tg~~GdGkiFV~pVe~~~~irtge~g~~a~~~ 114 (116)
T 1vfj_A 80 AARTGEVGDGKIFVLPVEKVYRIRTGEEDEAAVTP 114 (116)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBTHHHHSC
T ss_pred HhcCCCCCCEEEEEEEhHHeEEecCCCcchHhhcc
Confidence 99999999999999999999999999999999954
No 12
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=100.00 E-value=5.4e-36 Score=228.37 Aligned_cols=112 Identities=51% Similarity=0.925 Sum_probs=93.5
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
||+|+|||||+++++|++||.++|++|+|+++++|+|+|++.++.|+|.++.. ++.||++|+++|+|+++++++++|.+
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~-~~~~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 2eg2_A 1 MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVI-DFLPKVKIEVVVRDEDVEKVVETIVK 79 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEC------------------CCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeecccccc-ccccEEEEEEEEcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998878899999876 48999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 148 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 148 va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
+++||++|||+|||+||++++||||||+|++||
T Consensus 80 ~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 112 (112)
T 2eg2_A 80 TAQTGRVGDGKIFIIPVEDVIRIRTGERGEQAI 112 (112)
T ss_dssp HHCCSSTTCCEEEEEECSCCBCTTTCCBGGGTC
T ss_pred HhcCCCCCCEEEEEEEhHhEEEecCCCcccccC
Confidence 999999999999999999999999999999996
No 13
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=100.00 E-value=9e-36 Score=228.02 Aligned_cols=113 Identities=50% Similarity=0.870 Sum_probs=96.7
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 146 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~ 146 (193)
.||+|+|||||+++++|++||.++|++|+|+++++|+|++++..+.|+|.++.. ++.||++|+++|+|+++++++++|.
T Consensus 2 ~Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~-~~~~K~~ieivv~d~~v~~vv~~I~ 80 (114)
T 2gw8_A 2 PMKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAV-DFLPKIKIELVLADDAVERAIDVIV 80 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------C-CEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccc-cccceEEEEEEEcHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999998878899999876 4899999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCceEEcccCCcchhhh
Q 029477 147 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 180 (193)
Q Consensus 147 ~va~TG~~GDGkIFV~pVeeavrIrTgE~G~~Al 180 (193)
++++||++|||+|||+||++++||||||+|++||
T Consensus 81 ~~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 114 (114)
T 2gw8_A 81 EVARSGKIGDGKIFVLPVEEAIRIRTGERSDAAV 114 (114)
T ss_dssp HHHCCSSTTCCEEEEEEESCCBCTTTSCBCCTTC
T ss_pred HHhCCCCCCCEEEEEEEhHHeEEecCCCcCcccC
Confidence 9999999999999999999999999999999986
No 14
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=99.93 E-value=8.4e-26 Score=176.05 Aligned_cols=100 Identities=14% Similarity=0.226 Sum_probs=85.0
Q ss_pred CC-CCCCeEEEEEEECCCCHHHHHHHHHhC-CCceEEEEeeeeecccCCC---ceecccccccccccceeEEEEEEEcCc
Q 029477 62 YI-PDSKFYKVEAILRPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGS---TERHGGSEFSEDKFVAKVKMEIVVSKD 136 (193)
Q Consensus 62 ~~-~~~~MKkIeAIIrp~kld~V~eAL~e~-Gv~G~TV~~V~G~G~~~g~---~e~~~G~~~~~d~~~~KvkIeIVV~de 136 (193)
|+ -++.+++|+|||+|+++++|++||.+. |++|||+++|+|||+|+|. ++.|+|.+ ||++||++|+|+
T Consensus 16 ~~~~~~~~~lI~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~e-------pKvkiEivv~d~ 88 (120)
T 3ce8_A 16 YFQGMSTEQLLVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYR-------EFCKFEIMHPAA 88 (120)
T ss_dssp ----CCSEEEEEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEE-------EEEEEEEEEEGG
T ss_pred eecCCccceEEEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCC-------ceEEEEEEECHH
Confidence 44 455799999999999999999999999 9999999999999999998 77777755 899999999999
Q ss_pred cHHHHHHHHHHHhccCCCCCeEEEEEecCceEEcc
Q 029477 137 QVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVR 171 (193)
Q Consensus 137 ~ve~VIeaI~~va~TG~~GDGkIFV~pVeeavrIr 171 (193)
++++++++|.++|+||+. ||||+||++++||+
T Consensus 89 ~ve~vv~aI~~~a~tg~I---KIfV~pVe~~vRI~ 120 (120)
T 3ce8_A 89 QQAALLTALALVCKHNPC---RYWIMPIYQNGTLS 120 (120)
T ss_dssp GHHHHHHHHHHHTTTSCC---EEEEEECSCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCE---EEEEEEhHHeEEeC
Confidence 999999999999999988 99999999999985
No 15
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=99.90 E-value=3.8e-24 Score=164.25 Aligned_cols=98 Identities=20% Similarity=0.315 Sum_probs=76.0
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEE-cCccHHHHHHHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVV-SKDQVEGVIDKI 145 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV-~de~ve~VIeaI 145 (193)
.||+|+|||+|+++++|++||.++|++|+|+++|+|+|+|++.+. +..+.. ++.+|++||++| +|+++|+++++|
T Consensus 5 ~mKkIeaIi~p~kl~~V~~aL~~~Gv~G~TV~~v~G~G~q~~~~~---~~~~~~-~~~~kvkieivv~~de~vd~vv~~I 80 (111)
T 3dfe_A 5 RANKLVIVTEKVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRST---GKPNTS-DTDSNVKFEVLTENREMAEKIADQV 80 (111)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHTCSCCEEEEEBC----------------------CEEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEEEECHHHHHHHHHHHHHCCCCcEEEEecEeecCCCCCcC---ceEEEe-ccCCceEEEEEECCHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999987531 222333 489999999999 799999999999
Q ss_pred HHHhccCCCCCeEEEEEecCceEEcc
Q 029477 146 MEEARTGEIGDGKIFLVPVSDVIRVR 171 (193)
Q Consensus 146 ~~va~TG~~GDGkIFV~pVeeavrIr 171 (193)
.+.+.++. +|+|||+|| +++|-.
T Consensus 81 ~~~~~t~~--~G~ifVsdV-~vvR~~ 103 (111)
T 3dfe_A 81 AIKFFTDY--AGIIYICEA-EVLYGR 103 (111)
T ss_dssp HHHHTTTS--CEEEEEEEE-EEEEC-
T ss_pred HHHhhCCC--CEEEEEEEe-eEEecc
Confidence 99999988 599999999 888863
No 16
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=99.89 E-value=2.6e-23 Score=161.28 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=81.5
Q ss_pred CCCCCCCC------CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEE
Q 029477 59 SPDYIPDS------KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 132 (193)
Q Consensus 59 ~~~~~~~~------~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIV 132 (193)
++.++|++ .||+|+|||+|.++++|++||.++|+.|+|+++|+|+|++++.++.|+| ||++||++
T Consensus 10 ~~~~~~~~~~m~~~~mK~I~aIIr~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g---------~kv~IeiV 80 (119)
T 2cz4_A 10 SSGLVPRGSHMDLVPLKLVTIVAESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEG---------QNIRLETI 80 (119)
T ss_dssp ----------CCEEEEEEEEEEEEGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTT---------CEEEEEEE
T ss_pred ccccCcchhhCCcCCcEEEEEEECHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccC---------CCEEEEEE
Confidence 45666766 6899999999999999999999999999999999999999876554442 78999999
Q ss_pred EcCccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 133 VSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 133 V~de~ve~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
|+|+++++++++|.+.++||+. |+|||+||+
T Consensus 81 v~de~ve~vv~~I~~~~~tg~~--GkIFV~~Ve 111 (119)
T 2cz4_A 81 VSEEVALRILQRLQEEYFPHYA--VIAYVENVW 111 (119)
T ss_dssp ECHHHHHHHHHHHHHHTTTTSC--CEEEEEEEE
T ss_pred ECHHHHHHHHHHHHHHhcCCCC--EEEEEEEeE
Confidence 9999999999999999999876 899999996
No 17
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=99.78 E-value=7.7e-19 Score=135.69 Aligned_cols=87 Identities=22% Similarity=0.376 Sum_probs=78.9
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHH
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 145 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI 145 (193)
+.||+|+|||||+++++|++||.++|+.|++++.+.|+|+++ |++||++|+|+++|+++++|
T Consensus 4 m~MKlI~AIIrp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g------------------~~~leivV~De~Vd~vi~~I 65 (114)
T 3m05_A 4 MATKLVIAIVQDKDANYLSDQFIDQNVRATKLSTTGGFLQSG------------------NTTFMIGIEEERVPEVLEII 65 (114)
T ss_dssp CCEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEEEEETTTTEE------------------EEEEEEEEEGGGHHHHHHHH
T ss_pred CeEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEeccccccC------------------CEEEEEEEcHHHHHHHHHHH
Confidence 359999999999999999999999999999999999998763 47899999999999999999
Q ss_pred HHHhccCC------------------------CCCeEEEEEecCceEEc
Q 029477 146 MEEARTGE------------------------IGDGKIFLVPVSDVIRV 170 (193)
Q Consensus 146 ~~va~TG~------------------------~GDGkIFV~pVeeavrI 170 (193)
.++|+|-+ .|...|||.|||++.++
T Consensus 66 ~~~a~TR~~~~~~~~~~~~~~~~~~~~pvev~vGGAtvFvl~ve~f~k~ 114 (114)
T 3m05_A 66 KKASHTREEFMTPSVNMDVNMEGTTAYPIKVQVGGATVLVLPVDQFERF 114 (114)
T ss_dssp HHHHCCEEEEECC-------------CCEEEEECCEEEEEEECSEEEEC
T ss_pred HHHcCCceEEecCCCCCCcCcccccccceEEEEcceEEEEEEHHHeEEC
Confidence 99999921 27789999999999875
No 18
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=98.15 E-value=4.9e-06 Score=63.70 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=67.0
Q ss_pred CeEEEEEEECCCC-------HHHHHHHHHhCCCceEEEE-eeeeecccCCCceecccccccccccceeEEEEEEEcCccH
Q 029477 67 KFYKVEAILRPWR-------VQQVSSALLNMGIRGVTVS-DVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQV 138 (193)
Q Consensus 67 ~MKkIeAIIrp~k-------ld~V~eAL~e~Gv~G~TV~-~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~v 138 (193)
-|+++++++.... .+.+.+.|+++|+.|.|+. -+.|||+..-.. .+..+.. ..-.-+.||++.++|++
T Consensus 12 ~~~~Lriy~~E~~~~~g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih---~~~~l~l-s~dlPV~Ie~Vd~~eki 87 (114)
T 1o51_A 12 HMKLLKIYLGEKDKHSGKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMH---RSDFFSL-SPDLPIVLEIVDEEERI 87 (114)
T ss_dssp EEEEEEEEEETTCEETTEEHHHHHHHHHHHTTCSCCEEEECSCCCCC-----------------CCCEEEEEEEECHHHH
T ss_pred eeEEEEEEECCccccCCeEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEE---ccceeec-CCCCCEEEEEEcCHHHH
Confidence 4899999997765 5899999999999999997 699999985211 1111211 01234899999999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 139 EGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 139 e~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
+.+++.+.+... +|.|++.+|+
T Consensus 88 ~~~l~~l~~~v~-----~Glvt~e~V~ 109 (114)
T 1o51_A 88 NLFLKEIDNIDF-----DGLVFTADVN 109 (114)
T ss_dssp HHHHHHHHTCCC-----CSEEEEEEEE
T ss_pred HHHHHHHHHHhC-----CCEEEEEEEE
Confidence 999999988866 4899999986
No 19
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=97.90 E-value=5.6e-05 Score=58.85 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=68.5
Q ss_pred CeEEEEEEECCCC-------HHHHHHHHHhCCCceEEEEe-eeeecccCCCceecccccccccccceeEEEEEEEcCccH
Q 029477 67 KFYKVEAILRPWR-------VQQVSSALLNMGIRGVTVSD-VRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQV 138 (193)
Q Consensus 67 ~MKkIeAIIrp~k-------ld~V~eAL~e~Gv~G~TV~~-V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~v 138 (193)
+.+++++++.... .+.+.+.|+++|+.|.|+.. +.|||+..-.. .+..+... .-.-+.|+++.+++++
T Consensus 8 ~~~~LrIy~~E~d~~~g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih---~~~~l~ls-~dlPVvIe~Vd~~eki 83 (127)
T 2dcl_A 8 NTLRLRIYIGENDKWEGRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVH---SSDVIRLS-TDLPIIVEVVDRGHNI 83 (127)
T ss_dssp SEEEEEEEEETTCEETTEEHHHHHHHHHHHTTCSCEEEEECSEEEC------------------CCCEEEEEEEEEHHHH
T ss_pred cEEEEEEEEccccccCCcCHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEe---cceeeecC-CCCCEEEEEEcCHHHH
Confidence 4678999997665 68999999999999999994 89999985311 11112111 1224899999999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecCceEEccc
Q 029477 139 EGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRT 172 (193)
Q Consensus 139 e~VIeaI~~va~TG~~GDGkIFV~pVeeavrIrT 172 (193)
+.+++.+.+... +|.|++.+|+ +++.++
T Consensus 84 ~~~l~~l~~lv~-----~GlVt~e~Ve-v~~~~~ 111 (127)
T 2dcl_A 84 EKVVNVIKPMIK-----DGMITVEPTI-VLWVGT 111 (127)
T ss_dssp HHHHHHHTTTCS-----SSEEEEEECE-EEECCS
T ss_pred HHHHHHHHHHhC-----CCEEEEEEEE-EEEecC
Confidence 999999988865 5899999987 555543
No 20
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=95.74 E-value=0.044 Score=49.69 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=55.9
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCce-----EEEE--eeeeecccCCCceecccccccccccceeEEEEEEEcCccHH
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRG-----VTVS--DVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVE 139 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G-----~TV~--~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve 139 (193)
..+|+..+++.+..++|++||.++|... -.-+ +..|.-++...+..+-|..-.. +..+.++||++|+.....
T Consensus 160 ~~~Kl~v~vp~~~~~~v~~al~~aGag~ig~y~~csf~~~G~G~F~p~~~a~P~iG~~g~~-~~v~e~rie~i~p~~~~~ 238 (397)
T 2gx8_A 160 EMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQL-ERVEEVRIETIIPASLQR 238 (397)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CC-EEEEEEEEEEEEEGGGHH
T ss_pred ccceeeEeccchhhHHHHHHhhhccccccccccccccccccceeeccccCCCCccCCcCcc-cccceeEEEEEecHHHHH
Confidence 5899999999999999999999998552 1222 4445555544455666665444 478899999999999999
Q ss_pred HHHHHHHHH
Q 029477 140 GVIDKIMEE 148 (193)
Q Consensus 140 ~VIeaI~~v 148 (193)
.|++++.++
T Consensus 239 ~v~~al~~~ 247 (397)
T 2gx8_A 239 KVIKAMVTA 247 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 21
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=94.54 E-value=0.018 Score=51.70 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=21.6
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCce-----EEEEeeeeecc--cCCCceecccccccccccceeEEEEEEEcCccHHH
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRG-----VTVSDVRGFGA--QGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 140 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G-----~TV~~V~G~G~--~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~ 140 (193)
++|+.++|+.+..++|++||.++|+.- -.-+.+.|.|. +...+..+-|..-.. +..+.++||++|+......
T Consensus 135 ~~kl~v~vP~~~~~~v~~al~~aGag~ig~Y~~csf~~~G~G~F~p~~~a~P~ig~~g~~-~~v~e~rie~i~~~~~~~~ 213 (370)
T 2nyd_A 135 YYKVQTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKI-EDVDEVKIEFMIDAYQKSR 213 (370)
T ss_dssp EEEEC----------------------------------------------------------------CEEECSTHHHH
T ss_pred cceeEEecchhhHHHHHHHHHhcccccccccccceecccccceeccccccCCcccccccc-ccccceEEEEEechhhHHH
Confidence 899999999999999999999998661 12224444444 433344565654443 4678999999999999999
Q ss_pred HHHHHHH
Q 029477 141 VIDKIME 147 (193)
Q Consensus 141 VIeaI~~ 147 (193)
|++++.+
T Consensus 214 v~~al~~ 220 (370)
T 2nyd_A 214 AEQLIKQ 220 (370)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999874
No 22
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=88.96 E-value=1.4 Score=31.90 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 029477 77 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 156 (193)
Q Consensus 77 p~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~GD 156 (193)
.++-+++.+++.+.=-.|+|+.++.| ...+ -++..|.++|+..++.++.+.|.++=. +
T Consensus 15 S~~~eeI~~~I~~~l~rGvT~~~g~G--~Ys~---------------~~~~vl~~Vv~r~e~~~l~~~I~~iDp-----~ 72 (96)
T 3hlu_A 15 SAKRKIIADRMLQELDLGVTMLQAVG--AYKN---------------NETEVIMCVMRKATLVKVRNLLKEVDP-----D 72 (96)
T ss_dssp CTTHHHHHHHHHHHSCCCCEEEECEE--SSSS---------------SCCEEEEEEECHHHHHHHHHHHHTTCT-----T
T ss_pred eCCHHHHHHHHHHhcCCCEEEEEEEE--cccC---------------CCEEEEEEEecHHHHHHHHHHHHHHCC-----C
Confidence 45779999999963236888886655 3321 245799999999999999999988743 2
Q ss_pred eEEEEEecCceEE
Q 029477 157 GKIFLVPVSDVIR 169 (193)
Q Consensus 157 GkIFV~pVeeavr 169 (193)
..|.|+++.++.+
T Consensus 73 AFi~i~~v~eV~G 85 (96)
T 3hlu_A 73 AFMIVSTANEVFG 85 (96)
T ss_dssp CEEEEC-------
T ss_pred eEEEEEeccEEEc
Confidence 6888888887764
No 23
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=64.51 E-value=49 Score=25.88 Aligned_cols=86 Identities=8% Similarity=0.073 Sum_probs=60.1
Q ss_pred eEEEEEEECCCCHHHHHHHHHhC----CC------ceEEEEeeeeecccCCCc--ee-c-----ccccccccccceeEEE
Q 029477 68 FYKVEAILRPWRVQQVSSALLNM----GI------RGVTVSDVRGFGAQGGST--ER-H-----GGSEFSEDKFVAKVKM 129 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~----Gv------~G~TV~~V~G~G~~~g~~--e~-~-----~G~~~~~d~~~~KvkI 129 (193)
..-|.-+++...++...+.|.+. ++ .++++..+-|.|-..... .. | .+.++.. -......|
T Consensus 59 ~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~-IstSei~I 137 (181)
T 3s1t_A 59 KTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIEL-ISTSEIRI 137 (181)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE-EEEETTEE
T ss_pred ccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEE-EEcCCCEE
Confidence 55788899999988888888775 44 477788888888753211 11 1 1222111 01457899
Q ss_pred EEEEcCccHHHHHHHHHHHhccCCC
Q 029477 130 EIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 130 eIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
.+++++++.++.++++.+....++.
T Consensus 138 s~vV~~~d~~~Av~aLH~~f~l~~~ 162 (181)
T 3s1t_A 138 SVLCRDTELDKAVVALHEAFGLGGD 162 (181)
T ss_dssp EEEEEGGGHHHHHHHHHHHHTCCC-
T ss_pred EEEEeHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999887653
No 24
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=58.11 E-value=15 Score=31.85 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 65 DSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 65 ~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
+..+.-|.++++...+.++++.|+++|..++.+++..
T Consensus 249 ~~~w~aV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~~i~ 285 (289)
T 2vd3_A 249 DNGVVAVHAVVDEKEVFNLINRLKAVGARDILVVPIE 285 (289)
T ss_dssp SSCEEEEEEEEETTTHHHHHHHHHTTTCEEEEEEECS
T ss_pred CCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEeChh
Confidence 3459999999999999999999999999999998763
No 25
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=53.66 E-value=1e+02 Score=26.05 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=16.3
Q ss_pred CccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 029477 135 KDQVEGVIDKIMEEARTGEIGDGKIFLVPV 164 (193)
Q Consensus 135 de~ve~VIeaI~~va~TG~~GDGkIFV~pV 164 (193)
.+.++++++.|.++ ||+||++|+
T Consensus 111 ~d~v~~l~e~I~~A-------DgiV~aSP~ 133 (279)
T 2fzv_A 111 HPAVKELRALSEWS-------EGQVWCSPE 133 (279)
T ss_dssp CHHHHHHHHHHHHC-------SEEEEEEEE
T ss_pred CHHHHHHHHHHHHC-------CeEEEEcCc
Confidence 45566666666554 799999994
No 26
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=50.91 E-value=6.3 Score=33.69 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=63.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 32 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga- 110 (307)
T 3s5o_A 32 VDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGA- 110 (307)
T ss_dssp BCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCC-
Confidence 4555678899999999999999887777766654434322222222222346778888888999999999999888765
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 111 -davlv~~P~y 120 (307)
T 3s5o_A 111 -DAAMVVTPCY 120 (307)
T ss_dssp -SEEEEECCCT
T ss_pred -CEEEEcCCCc
Confidence 7888888753
No 27
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=50.84 E-value=5.5 Score=34.07 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=63.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 111 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGA- 111 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC-
Confidence 5566788999999999999998876666666654333322222222122346788888989999999999999988765
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 112 -davlv~~P~ 120 (304)
T 3l21_A 112 -HGLLVVTPY 120 (304)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 788888875
No 28
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=49.75 E-value=19 Score=26.42 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHH
Q 029477 80 VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 80 ld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
.+.++++|.+.|+.-++.++....-+..| .+ +.+..+|..+|+.....++++.=..
T Consensus 19 ~~~l~~al~~~Gf~v~~~~d~~~~~~~~G-------~~-----~~~~~~il~~cnp~~a~~~l~~~p~ 74 (130)
T 1q9u_A 19 IERLEESLKQEGFGVLWQFSVTEKLQEKG-------LD-----FSTPMVILEVCNPQEAARVLNENLL 74 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHTT-------CC-----CCSCEEEEEEECHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHhcC-------CC-----CCCCCEEEEEeCHHHHHHHHHhCHH
Confidence 45566777777988888888766555543 11 2256899999999999998886433
No 29
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=49.71 E-value=6.3 Score=33.55 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=63.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccce-eEEEEEEEcCccHHHHHHHHHHHhccCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVA-KVKMEIVVSKDQVEGVIDKIMEEARTGE 153 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~-KvkIeIVV~de~ve~VIeaI~~va~TG~ 153 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+.... ++.|.+-+.....+++++..+.+...|-
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 667788899999999999999887666666555433332222222211233 6788888999999999999999988765
Q ss_pred CCCeEEEEEecC
Q 029477 154 IGDGKIFLVPVS 165 (193)
Q Consensus 154 ~GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 105 --davlv~~P~y 114 (301)
T 3m5v_A 105 --DGILSVAPYY 114 (301)
T ss_dssp --SEEEEECCCS
T ss_pred --CEEEEcCCCC
Confidence 7888888853
No 30
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=49.40 E-value=18 Score=31.55 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=33.5
Q ss_pred CCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 65 DSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 65 ~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
+..+.-|.++++...+.++++.|.++|+.++.+++..
T Consensus 264 ~~~wvAV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~~I~ 300 (304)
T 1nh8_A 264 DPDWVAIRALVPRRDVNGIMDELAAIGAKAILASDIR 300 (304)
T ss_dssp STTEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEeChh
Confidence 3459999999999999999999999999999998753
No 31
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=49.32 E-value=67 Score=26.12 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=52.9
Q ss_pred CCeEEEEEEE---CCCCHHHHHHHHHh-CCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcC-ccHHH
Q 029477 66 SKFYKVEAIL---RPWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK-DQVEG 140 (193)
Q Consensus 66 ~~MKkIeAII---rp~kld~V~eAL~e-~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~d-e~ve~ 140 (193)
.....+++=| .|+.+..+.+.|.+ +|+--+.++++... . | =|-..|.++|+. ++.+.
T Consensus 10 d~i~vLETNIDD~tpE~lg~~~e~L~~~aGAlDV~~tPi~MK--K-n---------------RPg~~L~VLc~~~e~~e~ 71 (186)
T 3c19_A 10 SHLMFLVTVLDDRDGEVLGDAIQKLIEREEVLACHAVPCVTK--K-N---------------RPGHVLVVLVDGGEDPDR 71 (186)
T ss_dssp CCEEEEEEEEETTSTTHHHHHHHHHTTSTTEEEEEEEEEEET--T-T---------------EEEEEEEEEEECTTCHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCCeEEEeeeceEe--C-C---------------CceEEEEEEECCcccHHH
Confidence 4567788887 78999999999999 99998888876543 1 2 123689999999 99999
Q ss_pred HHHHHHHH
Q 029477 141 VIDKIMEE 148 (193)
Q Consensus 141 VIeaI~~v 148 (193)
+.+.|.+.
T Consensus 72 l~~iif~e 79 (186)
T 3c19_A 72 VAEDVARD 79 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999987
No 32
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=49.04 E-value=56 Score=28.15 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=53.1
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHH
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 145 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI 145 (193)
..++.|+.=++.++++++.+.| -|..+=||++..+ . ...+-|.++|+++++-++++.+
T Consensus 214 ~~~~~~~~n~p~~~l~~v~~~l--Pg~~~PTV~~l~~---~-----------------~~w~aV~~vv~~~~~~~~~~~L 271 (289)
T 2vd3_A 214 EGKRLVMLNIDRKNLDRVRALM--PGMTGPTVSEVLS---D-----------------NGVVAVHAVVDEKEVFNLINRL 271 (289)
T ss_dssp TTEEEEEEEEEGGGHHHHHHHC--CCSSSCEEEECCS---S-----------------SCEEEEEEEEETTTHHHHHHHH
T ss_pred ccEEEEEEeCCHHHHHHHHHhc--ccCCCCceecccC---C-----------------CCEEEEEEEEcHHHHHHHHHHH
Confidence 4567777777777777777766 2445555555321 0 1136799999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCceE
Q 029477 146 MEEARTGEIGDGKIFLVPVSDVI 168 (193)
Q Consensus 146 ~~va~TG~~GDGkIFV~pVeeav 168 (193)
++.+- --|.|+|++..+
T Consensus 272 k~~GA------~~Ilv~~i~k~~ 288 (289)
T 2vd3_A 272 KAVGA------RDILVVPIERII 288 (289)
T ss_dssp HTTTC------EEEEEEECSCCC
T ss_pred HHcCC------CeEEEeChhHhh
Confidence 88744 579999998753
No 33
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=48.09 E-value=11 Score=32.30 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=64.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..-.+...+....++.|.+-+.....+++++..+.+...|
T Consensus 25 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G-- 102 (311)
T 3h5d_A 25 INFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFG-- 102 (311)
T ss_dssp BCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcC--
Confidence 567889999999999999999997776766665433332222222222234678888888999999999988887753
Q ss_pred C-CeEEEEEecC
Q 029477 155 G-DGKIFLVPVS 165 (193)
Q Consensus 155 G-DGkIFV~pVe 165 (193)
+ ||.+.+.|--
T Consensus 103 a~davlv~~P~y 114 (311)
T 3h5d_A 103 GFAAGLAIVPYY 114 (311)
T ss_dssp CCSEEEEECCCS
T ss_pred CCcEEEEcCCCC
Confidence 4 8899888853
No 34
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=47.87 E-value=6.1 Score=33.57 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=62.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 103 (297)
T 3flu_A 25 IHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGA- 103 (297)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCC-
Confidence 3445677899999999999999876666666654333322222222112346788888999999999999999888764
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 104 -davlv~~P~ 112 (297)
T 3flu_A 104 -DYTLSVVPY 112 (297)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 788888874
No 35
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=47.15 E-value=64 Score=28.05 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHH
Q 029477 66 SKFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 145 (193)
Q Consensus 66 ~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI 145 (193)
..++.|+.=++.++++++.+.| -|..+=||++. . . ..-+-|.++|+++++-++++.+
T Consensus 230 ~~~~~l~~nvp~~~l~~v~~~l--Pg~~~PTVspL---~-~-----------------~~wvAV~~vv~~~~~~~~~~~L 286 (304)
T 1nh8_A 230 QQYLMLDYDCPRSALKKATAIT--PGLESPTIAPL---A-D-----------------PDWVAIRALVPRRDVNGIMDEL 286 (304)
T ss_dssp TTEEEEEEEEEGGGHHHHHHHC--CCSSSCEEEEC---S-S-----------------TTEEEEEEEEEGGGHHHHHHHH
T ss_pred cceEEEEEeCCHHHHHHHHHhc--cCCCCCeeeec---C-C-----------------CCeEEEEEEEcHHHHHHHHHHH
Confidence 3578888888888888887777 35556666665 1 1 0126799999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCceE
Q 029477 146 MEEARTGEIGDGKIFLVPVSDVI 168 (193)
Q Consensus 146 ~~va~TG~~GDGkIFV~pVeeav 168 (193)
.+.+- --|.|+|++..+
T Consensus 287 k~~GA------~~Ilv~~I~k~~ 303 (304)
T 1nh8_A 287 AAIGA------KAILASDIRFCR 303 (304)
T ss_dssp HHTTC------EEEEEECCSCCC
T ss_pred HHcCC------CeEEEeChhHhh
Confidence 98844 579999998753
No 36
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=46.35 E-value=6 Score=34.02 Aligned_cols=89 Identities=11% Similarity=0.074 Sum_probs=63.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++.++.+...|-
T Consensus 41 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Ga- 119 (314)
T 3qze_A 41 LDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGA- 119 (314)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCC-
Confidence 4556788899999999999998877777766654433322222222112346778888999999999999999988765
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 120 -davlv~~P~y 129 (314)
T 3qze_A 120 -DACLLVTPYY 129 (314)
T ss_dssp -SEEEEECCCS
T ss_pred -CEEEEcCCCC
Confidence 7888888743
No 37
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=46.06 E-value=14 Score=31.38 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=14.6
Q ss_pred cceeEEEEEEEcCccHHHHHHHHHH
Q 029477 123 FVAKVKMEIVVSKDQVEGVIDKIME 147 (193)
Q Consensus 123 ~~~KvkIeIVV~de~ve~VIeaI~~ 147 (193)
+.|+..+++ ++++.+.+.+.|-.
T Consensus 204 ~~P~~~v~l--~~e~~~~~~klid~ 226 (247)
T 4f3q_A 204 VLASTEVGL--DKDSAEQMLRLTEM 226 (247)
T ss_dssp EEESSCEEC--CHHHHHHHHHHHHH
T ss_pred EecCCcccc--CHHHHHHHHHHHHH
Confidence 677777765 66777666555443
No 38
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=45.92 E-value=8.8 Score=32.45 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga- 96 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGA- 96 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 5666788999999999999998876666666554333222222222112346788888999999999999998887654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (294)
T 2ehh_A 97 -DGALVVVPY 105 (294)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888874
No 39
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=45.23 E-value=5.7 Score=34.21 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=64.0
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 29 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 107 (318)
T 3qfe_A 29 LDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGA- 107 (318)
T ss_dssp ECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCC-
Confidence 5666788999999999999999987777766654433322222222112346778889999999999999999988765
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 108 -davlv~~P~ 116 (318)
T 3qfe_A 108 -NYVLVLPPA 116 (318)
T ss_dssp -SEEEECCCC
T ss_pred -CEEEEeCCc
Confidence 788888774
No 40
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.07 E-value=5.2 Score=33.83 Aligned_cols=88 Identities=8% Similarity=0.061 Sum_probs=62.0
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga- 97 (291)
T 3tak_A 19 VDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGA- 97 (291)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC-
Confidence 4556678899999999999998876666666554333222222222112346778888889999999999998888765
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 98 -davlv~~P~ 106 (291)
T 3tak_A 98 -DAALLVTPY 106 (291)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEEcCCC
Confidence 778888774
No 41
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=44.63 E-value=4.9 Score=34.62 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=62.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 40 iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga- 118 (315)
T 3si9_A 40 IDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGA- 118 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC-
Confidence 3445577899999999999998876666666554333222222222112346788888999999999999999988765
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 119 -davlv~~P~y 128 (315)
T 3si9_A 119 -DAVLVVTPYY 128 (315)
T ss_dssp -SEEEEECCCS
T ss_pred -CEEEECCCCC
Confidence 7888888853
No 42
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=44.14 E-value=84 Score=22.39 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=46.3
Q ss_pred EEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHH
Q 029477 69 YKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEE 148 (193)
Q Consensus 69 KkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~v 148 (193)
-=|..-++|+++++|.++|.++ +|..+.-+.+ . .-+|-++++.+..+++.+.|.++
T Consensus 8 sslvV~~~p~~~~~V~~~L~~i--pgvEi~~~~~---~-------------------~GkiVV~iEa~~~~~l~~~i~~I 63 (95)
T 2jsx_A 8 CSLVVQAKSERISDISTQLNAF--PGCEVAVSDA---P-------------------SGQLIVVVEAEDSETLIQTIESV 63 (95)
T ss_dssp EEEEEEECTTSHHHHHHHHTTS--TTEEEEEEET---T-------------------TTEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHCC--CCeEEEEecC---C-------------------CCCEEEEEEeCCHHHHHHHHHHH
Confidence 3455666999999999999987 5554321111 1 12788889999999999988665
Q ss_pred hccCCCCCeEEEEEec
Q 029477 149 ARTGEIGDGKIFLVPV 164 (193)
Q Consensus 149 a~TG~~GDGkIFV~pV 164 (193)
-.. +|.+-++-|
T Consensus 64 ~~i----~GVlst~lv 75 (95)
T 2jsx_A 64 RNV----EGVLAVSLV 75 (95)
T ss_dssp TTS----TTEEEEEES
T ss_pred hcC----CCccEEeEE
Confidence 443 456666554
No 43
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=43.58 E-value=6.3 Score=33.74 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=63.4
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga- 104 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGA- 104 (309)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCC-
Confidence 5567788999999999999999977777766654433322222222212346778888889999999999999888765
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 105 -davlv~~Py 113 (309)
T 3fkr_A 105 -AMVMAMPPY 113 (309)
T ss_dssp -SEEEECCSC
T ss_pred -CEEEEcCCC
Confidence 778887773
No 44
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=42.80 E-value=44 Score=27.79 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCCe
Q 029477 78 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDG 157 (193)
Q Consensus 78 ~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~GDG 157 (193)
..++++++.+++.|+.|..++-. |+| + .+..+++++.++++.+.+.+......--+.
T Consensus 281 p~l~~l~~~~~~~Ga~ga~lsGa-G~G---~-------------------~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (350)
T 2cz9_A 281 KELDFFVERALKLGAYGARLTGA-GFG---G-------------------SAIALVDKEDAETIGEEILREYLKRFPWKA 337 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSS-CSS---S-------------------EEEEEEEGGGHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEecC-CCc---e-------------------EEEEEEchhhHHHHHHHHHHHHHHhhCCCC
Confidence 35788899999998877654321 222 1 244556777889999998876543101235
Q ss_pred EEEEEec
Q 029477 158 KIFLVPV 164 (193)
Q Consensus 158 kIFV~pV 164 (193)
.+|++..
T Consensus 338 ~~~~~~~ 344 (350)
T 2cz9_A 338 RHFIVEP 344 (350)
T ss_dssp EEEEECE
T ss_pred cEEEecC
Confidence 7777765
No 45
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=42.48 E-value=8.1 Score=33.08 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=63.0
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+.. .++.|.+-+.....+++++..+.+...|-
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Ga- 103 (313)
T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGA- 103 (313)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCC-
Confidence 4556678899999999999998876667666654333322222222222 57788889999999999999999988765
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 104 -davlv~~P~ 112 (313)
T 3dz1_A 104 -AGVMIAPPP 112 (313)
T ss_dssp -SEEEECCCT
T ss_pred -CEEEECCCC
Confidence 778777775
No 46
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=42.14 E-value=10 Score=31.94 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=62.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga- 96 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGA- 96 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC-
Confidence 5667788999999999999998876666666554333322222222112346788889999999999999988887754
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (289)
T 2yxg_A 97 -DAVLSITPY 105 (289)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888874
No 47
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=42.11 E-value=9.3 Score=32.23 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=62.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga- 97 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV- 97 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC-
Confidence 4555688999999999999999877777776654433322222222112335778889999999999999998888654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 98 -davlv~~P~ 106 (291)
T 3a5f_A 98 -DGLLVITPY 106 (291)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEEcCCC
Confidence 678888774
No 48
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=41.91 E-value=9.5 Score=32.53 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=63.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga- 108 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGA- 108 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCC-
Confidence 6667788999999999999999877777776654433322222222112346778889999999999999998887764
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 109 -davlv~~P~ 117 (306)
T 1o5k_A 109 -NGVLVVTPY 117 (306)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888774
No 49
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=41.84 E-value=5.2 Score=34.43 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=62.7
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++.++.+...|-
T Consensus 42 iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga- 120 (315)
T 3na8_A 42 LDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGA- 120 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 3445677899999999999998877777666654333322222222112346778888899999999999999988765
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 121 -davlv~~P~y 130 (315)
T 3na8_A 121 -EAVMVLPISY 130 (315)
T ss_dssp -SEEEECCCCS
T ss_pred -CEEEECCCCC
Confidence 7788887743
No 50
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=41.67 E-value=9.2 Score=32.57 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=62.4
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 29 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga- 107 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGF- 107 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 5666788999999999999998876666666554333222222222112346788889999999999999988888754
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 108 -davlv~~P~ 116 (303)
T 2wkj_A 108 -DAVSAVTPF 116 (303)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEecCCC
Confidence 678888774
No 51
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=41.66 E-value=8.5 Score=32.60 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=61.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga- 99 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGA- 99 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCC-
Confidence 4556688999999999999998876666666654333222222222112335678889999999999999998887654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 100 -davlv~~P~ 108 (294)
T 3b4u_A 100 -RNILLAPPS 108 (294)
T ss_dssp -SEEEECCCC
T ss_pred -CEEEEcCCc
Confidence 677777774
No 52
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=41.39 E-value=77 Score=23.97 Aligned_cols=83 Identities=11% Similarity=0.190 Sum_probs=52.8
Q ss_pred eEEEEEEECCCCHHHHHHHHHh----CCCceEEE------EeeeeecccCCC--cee-c-----ccccccccccceeEEE
Q 029477 68 FYKVEAILRPWRVQQVSSALLN----MGIRGVTV------SDVRGFGAQGGS--TER-H-----GGSEFSEDKFVAKVKM 129 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e----~Gv~G~TV------~~V~G~G~~~g~--~e~-~-----~G~~~~~d~~~~KvkI 129 (193)
-.-|.-+|+.+..++..++|.+ .|+ .+.+ ..+-|.|-.... ... + .|..+..-. ....++
T Consensus 59 ~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is-~Se~~i 136 (167)
T 2dt9_A 59 RQQMAFTVKKDFAQEALEALEPVLAEIGG-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA-TSEVRI 136 (167)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE-ECSSEE
T ss_pred ceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE-ccCCEE
Confidence 3457777888888887888876 576 4444 678888854221 111 1 112211001 335699
Q ss_pred EEEEcCccHHHHHHHHHHHhccC
Q 029477 130 EIVVSKDQVEGVIDKIMEEARTG 152 (193)
Q Consensus 130 eIVV~de~ve~VIeaI~~va~TG 152 (193)
.+++++++.++.++++.+....+
T Consensus 137 s~vv~~~d~~~Av~~Lh~~f~~~ 159 (167)
T 2dt9_A 137 SVIIPAEYAEAALRAVHQAFELD 159 (167)
T ss_dssp EEEEEGGGHHHHHHHHHHHTC--
T ss_pred EEEEeHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999876543
No 53
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=41.14 E-value=10 Score=33.63 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCCe
Q 029477 78 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDG 157 (193)
Q Consensus 78 ~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~GDG 157 (193)
+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-+.....+++++..+.+...|- ||
T Consensus 80 ~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Ga--da 157 (360)
T 4dpp_A 80 EAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGM--HA 157 (360)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTC--SE
T ss_pred HHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCC--CE
Confidence 3467888999999999999876666665554333222122222112346778888888999999999988888654 77
Q ss_pred EEEEEec
Q 029477 158 KIFLVPV 164 (193)
Q Consensus 158 kIFV~pV 164 (193)
.+.+.|-
T Consensus 158 vlvv~Py 164 (360)
T 4dpp_A 158 ALHINPY 164 (360)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 8888874
No 54
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=41.08 E-value=9.8 Score=32.17 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=63.3
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 20 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 98 (292)
T 3daq_A 20 VNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA- 98 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC-
Confidence 6677889999999999999998876667666654333322222222112346778888888999999999988888753
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 99 -davlv~~P~ 107 (292)
T 3daq_A 99 -DAIMLITPY 107 (292)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888774
No 55
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=40.62 E-value=11 Score=32.09 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=62.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Ga- 112 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGA- 112 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCC-
Confidence 5666788999999999999998876666666554333322222222112346788899999999999999998887654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 113 -davlv~~P~ 121 (304)
T 3cpr_A 113 -DGLLVVTPY 121 (304)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888774
No 56
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=40.56 E-value=12 Score=31.66 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=62.4
Q ss_pred ECCCCHHHHHHHHHh-CCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCC
Q 029477 75 LRPWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGE 153 (193)
Q Consensus 75 Irp~kld~V~eAL~e-~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~ 153 (193)
|+.+.+.++.+.|.+ .|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 21 iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 445568899999999 9999998877667666654433322222222112346788899999999999999998888764
Q ss_pred CCCeEEEEEec
Q 029477 154 IGDGKIFLVPV 164 (193)
Q Consensus 154 ~GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 101 --davlv~~P~ 109 (293)
T 1f6k_A 101 --DCLSAVTPF 109 (293)
T ss_dssp --SEEEEECCC
T ss_pred --CEEEECCCC
Confidence 678888774
No 57
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=39.95 E-value=33 Score=29.91 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHhC-CCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 029477 77 PWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 155 (193)
Q Consensus 77 p~kld~V~eAL~e~-Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~G 155 (193)
...++++++++++. |+.|..++ |-|-. + .+..+++++.++++.+.+.+......-.
T Consensus 344 ~p~l~~l~~~a~~~~Ga~ga~ls---GaG~G-g-------------------~v~al~~~~~a~~~~~~l~~~~~~~~g~ 400 (419)
T 1pie_A 344 GLELDTLAETAQKQAGVLGARMT---GAGFG-G-------------------CAIALVAHDNVSAFRKAVGQVYEEVVGY 400 (419)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEC---SSCSS-S-------------------EEEEEEEGGGHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHhcCCCceeeEe---cCCCC-e-------------------EEEEEEchhhHHHHHHHHHHHHHHhcCC
Confidence 44688888888887 87665442 22211 1 3445567788999999988765421112
Q ss_pred CeEEEEEecCceEE
Q 029477 156 DGKIFLVPVSDVIR 169 (193)
Q Consensus 156 DGkIFV~pVeeavr 169 (193)
+..+|++...+-.+
T Consensus 401 ~~~~~~~~~~~Ga~ 414 (419)
T 1pie_A 401 PASFYVAQIGSGST 414 (419)
T ss_dssp CCEEEECCBCCCSB
T ss_pred CCeEEEEcCCCCee
Confidence 35778776544333
No 58
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=39.35 E-value=25 Score=25.78 Aligned_cols=77 Identities=17% Similarity=0.035 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCCeEE
Q 029477 80 VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKI 159 (193)
Q Consensus 80 ld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~GDGkI 159 (193)
.+.++++|.+.|+.-++.++....-+.+. |.+ .+..+|..+|+.....++++.=..++- .-|- +|
T Consensus 16 ~~~l~~al~~~Gf~v~~~id~~~~l~~k~------g~~------~~~~~il~~cnP~~a~~~l~~~p~~g~-~lPc--rv 80 (129)
T 1j3m_A 16 RAQVEAALKEEGFGILTEIDVAATLKAKL------GLE------KPPYLILGACNPNLAARALEALPEIGL-LLPC--NV 80 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHHH------CCC------CCCEEEEEEECHHHHHHHHHHCGGGGG-GCSE--EE
T ss_pred HHHHHHHHHHCCCEEEEEeCHHHHHHHhc------CCC------CCCeEEEEECCHHHHHHHHHhCHHHHh-hcCc--EE
Confidence 45677777888998888887755422220 111 356899999999999998876433332 2232 44
Q ss_pred EEEecCceEEcc
Q 029477 160 FLVPVSDVIRVR 171 (193)
Q Consensus 160 FV~pVeeavrIr 171 (193)
.|..-++-+.|.
T Consensus 81 ~V~e~~~~v~v~ 92 (129)
T 1j3m_A 81 VLREAEEGVEVL 92 (129)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEeCCeEEEE
Confidence 444434444443
No 59
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=38.84 E-value=10 Score=32.26 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=62.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga- 108 (301)
T 1xky_A 30 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGV- 108 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCC-
Confidence 5666788999999999999998876666666554333222222222112346778888999999999999998887653
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 109 -davlv~~P~ 117 (301)
T 1xky_A 109 -DAVMLVAPY 117 (301)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEEcCCC
Confidence 678888874
No 60
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=37.79 E-value=21 Score=30.92 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=29.2
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVR 101 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~V~ 101 (193)
.+.-|.++++...+.++++.|+++|..++-++++.
T Consensus 261 ~wvAV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~~I~ 295 (299)
T 1h3d_A 261 QRVAMHMVSSETLFWETMEKLKALGASSILVLPIE 295 (299)
T ss_dssp ----BEEEESSCCCHHHHHHHHHTTCCSCEEECCS
T ss_pred CEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEechH
Confidence 47899999999999999999999999999998753
No 61
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=37.21 E-value=1.2e+02 Score=24.44 Aligned_cols=26 Identities=15% Similarity=-0.056 Sum_probs=16.2
Q ss_pred CeEEEEEEE-CCCC-----------HHHHHHHHHhCCC
Q 029477 67 KFYKVEAIL-RPWR-----------VQQVSSALLNMGI 92 (193)
Q Consensus 67 ~MKkIeAII-rp~k-----------ld~V~eAL~e~Gv 92 (193)
.|++|.+|. .|.. ++.+.+.|.+.|.
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ 61 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGH 61 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTC
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCC
Confidence 588888888 5531 3455555666554
No 62
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=36.91 E-value=44 Score=24.56 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=25.4
Q ss_pred ceeEEEEEEEcCccHHHHHHHHHHHhccC
Q 029477 124 VAKVKMEIVVSKDQVEGVIDKIMEEARTG 152 (193)
Q Consensus 124 ~~KvkIeIVV~de~ve~VIeaI~~va~TG 152 (193)
.+-.+|++++..+.+++|.+++.++.-+|
T Consensus 4 ~~mKkIeaIi~p~kl~~V~~aL~~~Gv~G 32 (111)
T 3dfe_A 4 KRANKLVIVTEKVLLKKVAKIIEEAGATG 32 (111)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHHTCSC
T ss_pred CceEEEEEEECHHHHHHHHHHHHHCCCCc
Confidence 45689999999999999999999997654
No 63
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=36.46 E-value=11 Score=25.31 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=23.7
Q ss_pred ccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 029477 122 KFVAKVKMEIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 122 ~~~~KvkIeIVV~de~ve~VIeaI~~va~ 150 (193)
+|..++.+.+.++.++++.+.+.|.+..+
T Consensus 37 ~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~ 65 (76)
T 3lh2_S 37 DVQAFVLLRVALPAAKVAEFSAKLADFSG 65 (76)
T ss_dssp EEEEEEEEEEEECC-CC-CHHHHHHHHHT
T ss_pred cccCeEEEEEEECHHHHHHHHHHHHHHhC
Confidence 36778999999999999999999988866
No 64
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=36.15 E-value=9.1 Score=32.33 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=61.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga- 97 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGI- 97 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCC-
Confidence 4556688999999999999998876667666654333322222222112335778888999999999999888877653
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 98 -davlv~~P~ 106 (292)
T 2ojp_A 98 -VGCLTVTPY 106 (292)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678887774
No 65
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=36.07 E-value=5.4 Score=33.96 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 22 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 100 (300)
T 3eb2_A 22 VRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGA- 100 (300)
T ss_dssp BCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCC-
Confidence 4556788899999999999998776666666554333222222222112345678888889999999999999988875
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 101 -davlv~~P~y 110 (300)
T 3eb2_A 101 -DGILAILEAY 110 (300)
T ss_dssp -SEEEEEECCS
T ss_pred -CEEEEcCCCC
Confidence 7888888853
No 66
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=35.79 E-value=1.1e+02 Score=23.24 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=54.5
Q ss_pred eEEEEEEECCCCHHHHHHHHHhC----CCc------eEEEEeeeeecccC--CCcee-c-----ccccccccccceeEEE
Q 029477 68 FYKVEAILRPWRVQQVSSALLNM----GIR------GVTVSDVRGFGAQG--GSTER-H-----GGSEFSEDKFVAKVKM 129 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~----Gv~------G~TV~~V~G~G~~~--g~~e~-~-----~G~~~~~d~~~~KvkI 129 (193)
..-|.-+|+....++..++|.+. |+. ++++..+-|.|-.. |.... + .|..+..- -.....+
T Consensus 66 ~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i-stse~~i 144 (167)
T 2re1_A 66 TTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI-STSEIKV 144 (167)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE-EECSSEE
T ss_pred eeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE-EcccCEE
Confidence 45678888888888888888865 654 46667888888542 21111 0 12222110 1356789
Q ss_pred EEEEcCccHHHHHHHHHHHhc
Q 029477 130 EIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 130 eIVV~de~ve~VIeaI~~va~ 150 (193)
.+++++++.++.++++.+.-.
T Consensus 145 s~vv~~~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 145 SVLIDEKYMELATRVLHKAFN 165 (167)
T ss_dssp EEEEEGGGHHHHHHHHHHHTT
T ss_pred EEEEeHHHHHHHHHHHHHHhc
Confidence 999999999999999987643
No 67
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=35.06 E-value=11 Score=32.89 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=60.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 49 ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Ga- 127 (343)
T 2v9d_A 49 LDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGA- 127 (343)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 3344488999999999999998876666666554333222222222112346778888999999999999988888764
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 128 -davlv~~P~ 136 (343)
T 2v9d_A 128 -DGIVVINPY 136 (343)
T ss_dssp -SEEEEECCS
T ss_pred -CEEEECCCC
Confidence 678888874
No 68
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=35.02 E-value=11 Score=32.69 Aligned_cols=88 Identities=9% Similarity=0.044 Sum_probs=61.3
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 52 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Ga- 130 (332)
T 2r8w_A 52 VDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGA- 130 (332)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 3444588999999999999998876666666554333322222222112346788889999999999999988887754
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 131 -davlv~~P~ 139 (332)
T 2r8w_A 131 -DALLLAPVS 139 (332)
T ss_dssp -SEEEECCCC
T ss_pred -CEEEECCCC
Confidence 677777774
No 69
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=34.59 E-value=40 Score=25.15 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=29.6
Q ss_pred EEEEEEcCccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 029477 128 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPV 164 (193)
Q Consensus 128 kIeIVV~de~ve~VIeaI~~va~TG~~GDGkIFV~pV 164 (193)
.-.-+-.++..+.+.+.|.+....-..|+|.++.+|+
T Consensus 34 ~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm 70 (130)
T 3gx1_A 34 IALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM 70 (130)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECS
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 3334556788888999988888876779999999997
No 70
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=34.09 E-value=23 Score=30.19 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=27.8
Q ss_pred CCCCCCCeEEEEEEECCCCHHHHHHHHHhCCCceEEEE
Q 029477 61 DYIPDSKFYKVEAILRPWRVQQVSSALLNMGIRGVTVS 98 (193)
Q Consensus 61 ~~~~~~~MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~ 98 (193)
+-.--.+|+++..++..+..++|.++|.+.|.--+.=.
T Consensus 7 ~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~ 44 (357)
T 3rrk_A 7 TIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPL 44 (357)
T ss_dssp -------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEE
T ss_pred CCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEec
Confidence 33333479999999999999999999999987666543
No 71
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=32.57 E-value=8.8 Score=32.90 Aligned_cols=88 Identities=8% Similarity=0.028 Sum_probs=61.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.. ..+++++..+.+...|-
T Consensus 30 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Ga- 107 (316)
T 3e96_A 30 IDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGA- 107 (316)
T ss_dssp BCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCC-
Confidence 5667788999999999999998876666666654333322222222112346778888876 89999999999888765
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|.-
T Consensus 108 -davlv~~P~y 117 (316)
T 3e96_A 108 -DAVMIHMPIH 117 (316)
T ss_dssp -SEEEECCCCC
T ss_pred -CEEEEcCCCC
Confidence 7888887753
No 72
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=32.29 E-value=45 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=22.5
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|+++++.++++++.+++.++.-.
T Consensus 2 k~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 1hwu_A 2 KQVTAIIKPFKLDEVRESLAEVGVT 26 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998665
No 73
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=31.99 E-value=46 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|+++++.++++++.+++.++.-.
T Consensus 2 k~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 2eg2_A 2 KKIEAIIKPFKLDEVKDALVEIGIG 26 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998665
No 74
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=31.82 E-value=10 Score=31.98 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=61.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga- 96 (292)
T 2vc6_A 18 IDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGA- 96 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCC-
Confidence 5667788999999999999988876666666554333222222222112235778888999999999999988887654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (292)
T 2vc6_A 97 -DGVLIVSPY 105 (292)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEEcCCC
Confidence 678888874
No 75
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=31.36 E-value=48 Score=23.82 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.9
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 126 KVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 126 KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
-.+|+++++.++++++.+++.++.-.
T Consensus 3 Mk~I~aIIr~~~~~~v~~aL~~~G~~ 28 (114)
T 3bzq_A 3 MKLITAIVKPFTLDDVKTSLEDAGVL 28 (114)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred cEEEEEEECHHHHHHHHHHHHHCCCC
Confidence 35899999999999999999998665
No 76
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=31.25 E-value=48 Score=24.05 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=23.3
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 126 KVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 126 KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
-.+|+++++.++++++.+++.++.-.
T Consensus 5 Mk~I~aIIr~~~~~~v~~AL~~~G~~ 30 (116)
T 2ns1_B 5 MKLVTVIIKPFKLEDVREALSSIGIQ 30 (116)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999998665
No 77
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.16 E-value=11 Score=32.30 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=60.8
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+...+....++.|.+-+.. ..++.++..+.+...|-
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Ga- 107 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGA- 107 (314)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCC-
Confidence 5566688999999999999988766666665554333222222222112346788889999 99999999988887654
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 108 -davlv~~P~ 116 (314)
T 3d0c_A 108 -DCVMIHQPV 116 (314)
T ss_dssp -SEEEECCCC
T ss_pred -CEEEECCCC
Confidence 678777774
No 78
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=30.74 E-value=49 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|+++++.+++++|.+++.++.-.
T Consensus 4 k~I~aII~~~~~~~v~~aL~~~G~~ 28 (119)
T 2j9c_A 4 KKVEAIIRPEKLEIVKKALSDAGYV 28 (119)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 5899999999999999999998654
No 79
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=30.55 E-value=50 Score=23.81 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.6
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|+++++.++++++.+++.++.-.
T Consensus 4 k~I~aII~~~~~~~v~~aL~~~G~~ 28 (114)
T 2gw8_A 4 KKIEAIVKPFKLDDVREALTEIGIT 28 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 5899999999999999999998665
No 80
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=30.35 E-value=51 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=22.2
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|+++++.++++++.+++.++.-.
T Consensus 2 k~I~aII~~~~~~~V~~aL~~~G~~ 26 (116)
T 1vfj_A 2 KLIVAIVRPEKLNEVLKALFQAEVR 26 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999998554
No 81
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=30.22 E-value=56 Score=23.70 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=22.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|+++++.++++++.+++.++.-.
T Consensus 2 K~I~aIIr~~kl~~vk~AL~~~G~~ 26 (112)
T 3mhy_A 2 KLVMAIIKPFKLDEVREALTSLGIQ 26 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4899999999999999999998654
No 82
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=29.82 E-value=32 Score=28.93 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=59.8
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+... +.... |.+-+.....+++++..+.+...|-
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~-~~~~g--viaGvg~~~t~~ai~la~~A~~~Ga- 92 (293)
T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVY-DVTNK--IIFQVGGLNLDDAIRLAKLSKDFDI- 92 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHH-TTCSC--EEEECCCSCHHHHHHHHHHGGGSCC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHH-HHcCC--EEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 4555688999999999999998876666666654333322222222 12333 7788888899999999888887654
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 93 -davlv~~P~y 102 (293)
T 1w3i_A 93 -VGIASYAPYY 102 (293)
T ss_dssp -SEEEEECCCS
T ss_pred -CEEEEcCCCC
Confidence 6788887743
No 83
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=29.80 E-value=10 Score=32.11 Aligned_cols=88 Identities=8% Similarity=0.075 Sum_probs=61.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|+.+.+.++.+.|.+.|+.|+.+.-..|-+......|+..=.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 18 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga- 96 (297)
T 2rfg_A 18 VDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGA- 96 (297)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCC-
Confidence 5667788999999999999998876666666554333222222222112335778888999999999999988887754
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (297)
T 2rfg_A 97 -DAVLCVAGY 105 (297)
T ss_dssp -SEEEECCCT
T ss_pred -CEEEEcCCC
Confidence 677777774
No 84
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=27.97 E-value=58 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|++++..++++++.+++.++.-.
T Consensus 2 K~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (119)
T 3ncq_A 2 KKIEAIVRAEKFPEVKAALEERGFY 26 (119)
T ss_dssp EEEEEEECTTTHHHHHHHHHHTTCC
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4899999999999999999998654
No 85
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=27.91 E-value=59 Score=23.91 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.5
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|++++..++++++.+++.++.-.
T Consensus 2 K~I~AIIrp~kl~~vk~AL~~~G~~ 26 (116)
T 4aff_A 2 KKIEAIIRPFKLDEVKIALVNAGIV 26 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4899999999999999999998665
No 86
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=27.43 E-value=30 Score=29.04 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=59.4
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+-+.-..|-+......|+..=.+... +.... |.+-+.....+++++..+.+...|-
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~-~~~~g--ViaGvg~~~t~~ai~la~~A~~~Ga- 92 (288)
T 2nuw_A 17 VNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALY-DVTHK--LIFQVGSLNLNDVMELVKFSNEMDI- 92 (288)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHT-TTCSC--EEEECCCSCHHHHHHHHHHHHTSCC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHH-HHhCC--eEEeeCCCCHHHHHHHHHHHHhcCC-
Confidence 4555688999999999999998876666666554333322222222 12333 7788888999999999988887653
Q ss_pred CCeEEEEEecC
Q 029477 155 GDGKIFLVPVS 165 (193)
Q Consensus 155 GDGkIFV~pVe 165 (193)
||.+.+.|--
T Consensus 93 -davlv~~P~y 102 (288)
T 2nuw_A 93 -LGVSSHSPYY 102 (288)
T ss_dssp -SEEEECCCCS
T ss_pred -CEEEEcCCcC
Confidence 6788777743
No 87
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=27.20 E-value=61 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+|++++..++++++.+++.++.-.
T Consensus 2 K~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (118)
T 3t9z_A 2 KMVVAVIRPEKLECVKKALEERGFV 26 (118)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCc
Confidence 4899999999999999999998664
No 88
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=26.23 E-value=26 Score=29.41 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 029477 75 LRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 154 (193)
Q Consensus 75 Irp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~TG~~ 154 (193)
|..+.+.++.+.|.+.|+.|+.+.-..|-+......|+..-.+... +.... |.+-+.....+++++..+.+...|-
T Consensus 16 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~-~~~~g--vi~Gvg~~~t~~ai~la~~A~~~Ga- 91 (286)
T 2r91_A 16 LDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAAT-SAARR--VIVQVASLNADEAIALAKYAESRGA- 91 (286)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHH-HHCSS--EEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHH-HHhCC--EEEeeCCCCHHHHHHHHHHHHhcCC-
Confidence 5666788999999999999998876666666554333322222222 12333 7788888899999999998888754
Q ss_pred CCeEEEEEec
Q 029477 155 GDGKIFLVPV 164 (193)
Q Consensus 155 GDGkIFV~pV 164 (193)
||.+.+.|-
T Consensus 92 -davlv~~P~ 100 (286)
T 2r91_A 92 -EAVASLPPY 100 (286)
T ss_dssp -SEEEECCSC
T ss_pred -CEEEEcCCc
Confidence 677777774
No 89
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=25.67 E-value=1.2e+02 Score=26.91 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 77 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 77 p~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
...++++.+++++.|+-|..++- -|+| | -+..+|+++.++++++.+.+....
T Consensus 399 ~peld~l~~~a~~~Ga~GarltG-AG~G---G-------------------~viaLv~~~~~~~~~~~l~~~y~~ 450 (478)
T 2a2c_A 399 CPELDQLVDICRKFGAQGSRLTG-AGWG---G-------------------CTVSMVPADKLPSFLANVHKAYYQ 450 (478)
T ss_dssp CHHHHHHHHHHHHTTCSEEEECT-TCSS---S-------------------EEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCcEEEecc-CCCc---c-------------------EEEEEEcHHHHHHHHHHHHHHHHH
Confidence 44578888888888887766532 1222 2 244556778899999998876543
No 90
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=25.21 E-value=76 Score=23.38 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.7
Q ss_pred EcCccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 029477 133 VSKDQVEGVIDKIMEEARTGEIGDGKIFLVPV 164 (193)
Q Consensus 133 V~de~ve~VIeaI~~va~TG~~GDGkIFV~pV 164 (193)
-+++..+.+.+.|.+....-..|||.++.+|+
T Consensus 36 ~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 36 VPGENAETLIEKYNAQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESS
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 34667788888888888776778999999997
No 91
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=25.01 E-value=83 Score=23.24 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=24.2
Q ss_pred ceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 124 VAKVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 124 ~~KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
.+-.+|++++..+..+++.+++.+..-+
T Consensus 23 ~~mK~I~aIIr~~k~e~V~~aL~~~Gi~ 50 (119)
T 2cz4_A 23 VPLKLVTIVAESLLEKRLVEEVKRLGAK 50 (119)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCC
Confidence 3567899999999999999999988655
No 92
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=24.23 E-value=73 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=25.0
Q ss_pred ceeEEEEEEEcCccHHHHHHHHHHHhccC
Q 029477 124 VAKVKMEIVVSKDQVEGVIDKIMEEARTG 152 (193)
Q Consensus 124 ~~KvkIeIVV~de~ve~VIeaI~~va~TG 152 (193)
..-.+|++++..++++++.+++.++.-+|
T Consensus 11 ~~MK~I~AIIr~~k~~~V~~AL~~~G~~G 39 (135)
T 2o66_A 11 SKFYKVEAIVRPWRIQQVSSALLKIGIRG 39 (135)
T ss_dssp CSEEEEEEEECGGGHHHHHHHHHHTTCCC
T ss_pred CCeEEEEEEECHHHHHHHHHHHHHCCCce
Confidence 34579999999999999999999987653
No 93
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=24.17 E-value=72 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.2
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhc
Q 029477 127 VKMEIVVSKDQVEGVIDKIMEEAR 150 (193)
Q Consensus 127 vkIeIVV~de~ve~VIeaI~~va~ 150 (193)
.+|++++..++++++.+++.++.-
T Consensus 4 KkI~AIIrp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 4 KKIEAIIRSDKLEDLKAALVQSGF 27 (115)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCC
Confidence 589999999999999999999866
No 94
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=23.80 E-value=2.4e+02 Score=24.65 Aligned_cols=84 Identities=10% Similarity=0.141 Sum_probs=55.2
Q ss_pred eEEEEEEECCCCHHHHHHHHHhC----CCceEEE------EeeeeecccCCC--ceec------ccccccccccceeEEE
Q 029477 68 FYKVEAILRPWRVQQVSSALLNM----GIRGVTV------SDVRGFGAQGGS--TERH------GGSEFSEDKFVAKVKM 129 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~----Gv~G~TV------~~V~G~G~~~g~--~e~~------~G~~~~~d~~~~KvkI 129 (193)
..-|.-+|+....++..+.|.+. |+..+++ ..+-|.|-.... .... .+.++..- -..+.+|
T Consensus 307 ~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i-s~Se~~i 385 (421)
T 3ab4_A 307 TTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI-STSEIRI 385 (421)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE-EEETTEE
T ss_pred cceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE-EcCCCeE
Confidence 34677788888887777777754 7654444 788888865321 1111 11222100 1346789
Q ss_pred EEEEcCccHHHHHHHHHHHhccC
Q 029477 130 EIVVSKDQVEGVIDKIMEEARTG 152 (193)
Q Consensus 130 eIVV~de~ve~VIeaI~~va~TG 152 (193)
.+++++++.++.++++.+....+
T Consensus 386 s~vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 386 SVLIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp EEEEEGGGHHHHHHHHHHHTTCC
T ss_pred EEEEeHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999987653
No 95
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=23.63 E-value=2.5e+02 Score=21.42 Aligned_cols=87 Identities=8% Similarity=0.100 Sum_probs=55.2
Q ss_pred CCCCeEEEEEEECCCCHHHHHHHHHh----CCCceEEEE------eeeeecccCCC--cee-c-----ccccccccccce
Q 029477 64 PDSKFYKVEAILRPWRVQQVSSALLN----MGIRGVTVS------DVRGFGAQGGS--TER-H-----GGSEFSEDKFVA 125 (193)
Q Consensus 64 ~~~~MKkIeAIIrp~kld~V~eAL~e----~Gv~G~TV~------~V~G~G~~~g~--~e~-~-----~G~~~~~d~~~~ 125 (193)
|...-..|.-.+.....++..++|.+ .++..+++. .+-|.|-.... ... + .|..+..-. ..
T Consensus 54 ~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is-tS 132 (178)
T 2dtj_A 54 VEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS-TS 132 (178)
T ss_dssp TTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE-EE
T ss_pred CCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE-cC
Confidence 33334456666777777778888886 466655555 88888776321 111 1 111211001 33
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhcc
Q 029477 126 KVKMEIVVSKDQVEGVIDKIMEEART 151 (193)
Q Consensus 126 KvkIeIVV~de~ve~VIeaI~~va~T 151 (193)
...|.++++++++++.++++.+.-..
T Consensus 133 e~~Is~vV~~~d~~~Av~~Lh~~F~l 158 (178)
T 2dtj_A 133 EIRISVLIREDDLDAAARALHEQFQL 158 (178)
T ss_dssp TTEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred CCeEEEEEeHHHHHHHHHHHHHHHcc
Confidence 57889999999999999999987764
No 96
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=23.55 E-value=39 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred eEEEEEEECCCCHHHHHHHHHhCCCceEEEEe--eeeeccc
Q 029477 68 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSD--VRGFGAQ 106 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~Gv~G~TV~~--V~G~G~~ 106 (193)
|-+|...+.++..+.+.+.|.+.|+.|+++.+ +.++-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 41 (254)
T 2nxc_A 1 MWVYRLKGTLEALDPILPGLFDGGARGLWEREGEVWAFFPA 41 (254)
T ss_dssp CEEEEEESCHHHHGGGHHHHHHTTCCEEEEETTEEEEEESS
T ss_pred CEEEEEEcCHHHHHHHHHHHHhhCCCEEEEECCeEEEEEcC
Confidence 66788888889999999999999999999986 6666543
No 97
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=22.97 E-value=1.1e+02 Score=24.06 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeecccCCCceecccccccccccceeEEEEEEEcCccHHH
Q 029477 76 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 140 (193)
Q Consensus 76 rp~kld~V~eAL~e~Gv~G~TV~~V~G~G~~~g~~e~~~G~~~~~d~~~~KvkIeIVV~de~ve~ 140 (193)
...+...|.+.|.+.|++.-.+..+.|+|...-... ... ....+-+|||++.....+.
T Consensus 117 S~~RA~aV~~~L~~~Gi~~~ri~~~~G~G~~~P~~~---n~t----~r~~NRRVeI~i~~~~~~~ 174 (183)
T 2zvy_A 117 SADRANASRRELVAGGLDNGKVLRVVGMAATMRLSD---RGP----DDAINRRISLLVLNKQAEQ 174 (183)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEECTTTTCSSC---SST----TGGGGSEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHhheeEEecccCcCCC---CCC----cchhcCcEEEEEeccchhh
Confidence 455788999999999998877778889998743211 011 1344568888887665443
No 98
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=22.74 E-value=79 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=26.8
Q ss_pred EEEcCccHHHHHHHHHHHhccCC--CCCeEEEEEec
Q 029477 131 IVVSKDQVEGVIDKIMEEARTGE--IGDGKIFLVPV 164 (193)
Q Consensus 131 IVV~de~ve~VIeaI~~va~TG~--~GDGkIFV~pV 164 (193)
=+-.++..+.+.+.|.+....-. .|+|.++.+|+
T Consensus 37 d~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~Dm 72 (139)
T 3gdw_A 37 NMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDM 72 (139)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECS
T ss_pred EccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 44567778888888888887523 69999999997
No 99
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=22.06 E-value=98 Score=23.37 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=22.6
Q ss_pred EEcCccHHHHHHHHHHHhccC-CCCCeEEEEEec
Q 029477 132 VVSKDQVEGVIDKIMEEARTG-EIGDGKIFLVPV 164 (193)
Q Consensus 132 VV~de~ve~VIeaI~~va~TG-~~GDGkIFV~pV 164 (193)
+-+++..+.+.+.+.+....- ..|||.++.+|+
T Consensus 37 ~~~~~~~~~~~~~i~~~i~~~~~~~~gvliLtDl 70 (144)
T 3lfh_A 37 LNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDL 70 (144)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCCcEEEEEeC
Confidence 344556666666666665543 559999999998
No 100
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=21.20 E-value=75 Score=25.60 Aligned_cols=92 Identities=8% Similarity=0.106 Sum_probs=57.4
Q ss_pred eEEEEEEECCCCHHHHHHHHHhC----CCc------eEEEEeeeeecccCCCc--eec------ccccccccccceeEEE
Q 029477 68 FYKVEAILRPWRVQQVSSALLNM----GIR------GVTVSDVRGFGAQGGST--ERH------GGSEFSEDKFVAKVKM 129 (193)
Q Consensus 68 MKkIeAIIrp~kld~V~eAL~e~----Gv~------G~TV~~V~G~G~~~g~~--e~~------~G~~~~~d~~~~KvkI 129 (193)
..-+.-.+....+++..+.|.+. ++. ++....+-|.|-..... .+. .+..+..- -..+.+|
T Consensus 78 ~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI-stSEi~I 156 (200)
T 4go7_X 78 KTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI-STSEIRI 156 (200)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE-EECSSEE
T ss_pred ceEEEEecchhhHHHHHHHHHHHHhhhceeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE-EccCCEE
Confidence 34455556777788888877765 444 56666777888774321 111 12222110 1457899
Q ss_pred EEEEcCccHHHHHHHHHHHhccCCCCCeEEE
Q 029477 130 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIF 160 (193)
Q Consensus 130 eIVV~de~ve~VIeaI~~va~TG~~GDGkIF 160 (193)
.++|+++++++.++++.+.-..+..-.-.+|
T Consensus 157 S~vV~~~d~~~Av~aLH~~F~L~~~~~~~v~ 187 (200)
T 4go7_X 157 SVLCRDTELDKAVVALHEAFGLGGDEEATVY 187 (200)
T ss_dssp EEEEEGGGHHHHHHHHHHHHTC----CCEEC
T ss_pred EEEEeHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 9999999999999999999887654443333
No 101
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=21.01 E-value=1.5e+02 Score=19.46 Aligned_cols=29 Identities=17% Similarity=0.004 Sum_probs=24.3
Q ss_pred EEEEEEECCCCHHHHHHHHHhCCCceEEE
Q 029477 69 YKVEAILRPWRVQQVSSALLNMGIRGVTV 97 (193)
Q Consensus 69 KkIeAIIrp~kld~V~eAL~e~Gv~G~TV 97 (193)
..+...|.|.+++++.+.|.+.|+.--.+
T Consensus 47 ~~vdI~V~p~~~~~f~~~L~~~~I~y~Vl 75 (78)
T 2gjf_A 47 QPVVILIPSDMVEWFLEMLKAKGIPFTVY 75 (78)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEECHHHHHHHHHHHHHCCCcEEEE
Confidence 35678999999999999999999875443
No 102
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.94 E-value=56 Score=23.70 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCceEEEEe
Q 029477 81 QQVSSALLNMGIRGVTVSD 99 (193)
Q Consensus 81 d~V~eAL~e~Gv~G~TV~~ 99 (193)
++|.++|+++|+..++|+-
T Consensus 27 PEv~~~L~~aGi~~ysIfl 45 (104)
T 1x8d_A 27 PELEAVLKSHGAHNYAIYL 45 (104)
T ss_dssp HHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEE
Confidence 5789999999999999986
No 103
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.63 E-value=3.4e+02 Score=21.96 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=16.9
Q ss_pred CccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 029477 135 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 165 (193)
Q Consensus 135 de~ve~VIeaI~~va~TG~~GDGkIFV~pVe 165 (193)
++.++++++.|.++ ||+||++|+-
T Consensus 86 ~d~~~~l~~~i~~A-------D~iI~~sP~Y 109 (247)
T 2q62_A 86 HPKVQELRELSIWS-------EGQVWVSPER 109 (247)
T ss_dssp SHHHHHHHHHHHHC-------SEEEEEEECS
T ss_pred CHHHHHHHHHHHHC-------CEEEEEeCCC
Confidence 45566666666554 7999999953
No 104
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=20.23 E-value=85 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=27.9
Q ss_pred CeEEEEEEECCCCHHHHHHHHHhCCCceE-EEEeee
Q 029477 67 KFYKVEAILRPWRVQQVSSALLNMGIRGV-TVSDVR 101 (193)
Q Consensus 67 ~MKkIeAIIrp~kld~V~eAL~e~Gv~G~-TV~~V~ 101 (193)
..-.|++|..+++++++.+.|.++=-.|+ |+.+|.
T Consensus 74 lPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~ 109 (114)
T 1o51_A 74 LPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVN 109 (114)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEE
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 47799999999999999999999833454 555553
Done!