BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029478
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana
GN=VAMP727 PE=2 SV=1
Length = 240
Score = 307 bits (786), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 164/171 (95%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D
Sbjct: 1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLAD+DEDDDLF DRFS
Sbjct: 61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFS 120
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV
Sbjct: 121 VAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis
thaliana GN=VAMP726 PE=3 SV=2
Length = 220
Score = 209 bits (533), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 127/171 (74%), Gaps = 19/171 (11%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D
Sbjct: 1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
+GF + VV ES GR +P FLERVK+DF +RYG + +
Sbjct: 61 NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGG-------------------KASTA 101
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
A +L++EFG +LKEHMQYC HPEE+SKLSK+KAQ+TEVKG+MM+NIEKV
Sbjct: 102 KANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKV 152
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana
GN=VAMP725 PE=2 SV=2
Length = 285
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 129/171 (75%), Gaps = 19/171 (11%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L++
Sbjct: 66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 125
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
+GF + VVA ESVGR +P FLERVK+DF +RYG + +
Sbjct: 126 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGG-------------------KATTA 166
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KAQ+TEVKG+MM+NIEKV
Sbjct: 167 QANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKV 217
>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana
GN=VAMP722 PE=2 SV=2
Length = 221
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 128/171 (74%), Gaps = 19/171 (11%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
+GF + VVA +S GR +P FLERVK+DF +RYG + +
Sbjct: 61 NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATA 101
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKV
Sbjct: 102 QANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKV 152
>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana
GN=VAMP721 PE=1 SV=1
Length = 219
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 127/171 (74%), Gaps = 19/171 (11%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
GF + VVA +S GR +P FLERVK+DF +RYG + +
Sbjct: 61 DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATA 101
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKV
Sbjct: 102 QANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKV 152
>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana
GN=VAMP723 PE=2 SV=1
Length = 217
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 120/171 (70%), Gaps = 19/171 (11%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L++
Sbjct: 1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
+GF + VVA +S GR +P FLERVK+DF +RYG A D
Sbjct: 61 NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGG-------EKAATDQ----------- 102
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
A +L++EFG LKEHMQYCM HP+E+S L+K KAQ++EVK +MM+NIEKV
Sbjct: 103 -ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKV 152
>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana
GN=VAMP724 PE=2 SV=2
Length = 222
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 120/172 (69%), Gaps = 20/172 (11%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLL 59
M Q+ IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL+
Sbjct: 1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLV 60
Query: 60 DSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRF 119
+ G+ + VVA +S+ + + FLERVK DFK+RYG +
Sbjct: 61 EDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGG-------------------KAST 101
Query: 120 SIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
+IA +L++EFGP +KEHM Y + H EE+ KL K+KAQ++EVK IM++NI+K
Sbjct: 102 AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKA 153
>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana
GN=VAMP711 PE=2 SV=2
Length = 219
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 22/168 (13%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGF 63
++Y+ V++GTVVL+E T+ S N STIA Q L+K+P + S +YS D + F+ G
Sbjct: 2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61
Query: 64 VFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAY 123
L +A+E+ GR +PF FLE + F + YG ++ ++AY
Sbjct: 62 TVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAY 101
Query: 124 NLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L + + Y + P +++++K ++ +V+G+M++NI+KV
Sbjct: 102 AMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKV 148
>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana
GN=VAMP713 PE=2 SV=1
Length = 221
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 23/169 (13%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSG 62
+I++ V++GTVVL+E ++ S N S+I+ Q L+KLP S S +YS D + F+ G
Sbjct: 2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61
Query: 63 FVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIA 122
L +ADE+ GR++PF FL+ + F + YG +I + + A
Sbjct: 62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------A 101
Query: 123 YNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
Y+++ EF L + M++ + P ++S++K ++++V+ +M++NI+KV
Sbjct: 102 YSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKV 149
>sp|Q9SIQ9|VA712_ARATH Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana
GN=VAMP712 PE=3 SV=1
Length = 219
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 22/167 (13%)
Query: 6 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFV 64
++Y+ V++GTVVLAE ++ S N STIA Q L+K+P + S +YS D + F+ G
Sbjct: 3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLT 62
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
L +ADE GR +PF FLE + F + YG +I + + AY
Sbjct: 63 VLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYA 102
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L + ++Y + P +S++K ++ +V+ +M++NI+ +
Sbjct: 103 MNDEFSRVLNQQIEYYSNDP-NADTISRIKGEMNQVRDVMIENIDNI 148
>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum
GN=vamp7B PE=3 SV=1
Length = 260
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 21/163 (12%)
Query: 6 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVF 65
+IYS V++G+ VLAE TS +GNF TI + L +P + +K +Y + + F++L+ +
Sbjct: 3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTY 62
Query: 66 LVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNL 125
L +ADE GR +PF FL+ VK+ FK YG + + +IAY +
Sbjct: 63 LCMADEEFGRRIPFTFLDDVKNRFKSMYGD--------------------KGKTAIAYGM 102
Query: 126 DREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNI 168
+ +F L+ M + S+ + +S+ A+I EVK I++ +I
Sbjct: 103 NSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDI 144
>sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana
GN=VAMP714 PE=2 SV=1
Length = 221
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 23/169 (13%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSG 62
++Y+ V++GTVVLAE ++ +GN + + L+KL S + +S D + F+ L G
Sbjct: 2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDG 61
Query: 63 FVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIA 122
FL +A+++ GR VPF +LE + F + YG N A
Sbjct: 62 LTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAP--------------------A 101
Query: 123 YNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
Y ++ EF L + M++ S+P + L++++ +++E++ +M++NIEK+
Sbjct: 102 YAMNDEFSRVLHQQMEFFSSNP-SVDTLNRVRGEVSEIRSVMVENIEKI 149
>sp|Q9JHW5|VAMP7_RAT Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7
PE=1 SV=1
Length = 220
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 21/167 (12%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
+L + D+ RS F FL VK F+ YG+ Q ++ Y
Sbjct: 62 YLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQT--------------------ALPYA 101
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L +++ S + + ++++ +AQ+ E+KGIM+ NI+ V
Sbjct: 102 MNSEFSSVLAAQLKH-HSENQSLDRVTETQAQVDELKGIMVRNIDLV 147
>sp|P70280|VAMP7_MOUSE Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1
SV=1
Length = 220
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
+L + D+ RS F FL VK F+ YG+ Q ++ Y
Sbjct: 62 YLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------ALPYA 101
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L +++ S + + K+ + +AQ+ E+KGIM+ NI+ V
Sbjct: 102 MNSEFSSVLAAQLKH-HSENKSLDKVMETQAQVDELKGIMVRNIDLV 147
>sp|Q5ZL74|VAMP7_CHICK Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7
PE=2 SV=1
Length = 220
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRII 61
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
+L + D+ RS F FL +K F+ YG+ Q ++ Y
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYA 101
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L ++Y S + ++++ +AQ+ E+KGIM+ NI+ V
Sbjct: 102 MNSEFSSVLAAQLKY-HSESKGTDQVAETQAQVDELKGIMVRNIDLV 147
>sp|Q17QI5|VAMP7_BOVIN Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2
SV=1
Length = 220
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
+L + D+ RS F FL +K F+ YG+ Q ++ Y
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYA 101
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L +++ S + + K+ + +AQ+ E+KGIM+ NI+ V
Sbjct: 102 MNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLV 147
>sp|P51809|VAMP7_HUMAN Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1
SV=3
Length = 220
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TYS + F+++ V
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
+L + D+ RS F FL +K F+ YG+ Q ++ Y
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYA 101
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L +++ S + + K+ + +AQ+ E+KGIM+ NI+ V
Sbjct: 102 MNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLV 147
>sp|Q5RF94|VAMP7_PONAB Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2
SV=3
Length = 220
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFV 64
++++ V++GT +LA+H GNF + Q L K+P+ ++K TY + F+++ V
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIV 61
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYN 124
+L + D+ RS F FL +K F+ YG+ Q ++ Y
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYA 101
Query: 125 LDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
++ EF L +++ S + + K+ + +AQ+ E+KGIM+ NI+ V
Sbjct: 102 MNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLV 147
>sp|Q54NW7|VAM7A_DICDI Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum
GN=vamp7A PE=1 SV=1
Length = 216
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 23/170 (13%)
Query: 1 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLD 60
M+Q ++Y+ VS V L EH +GNF +A + + K+P +S K Y+ + H F+++ +
Sbjct: 1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKK-IYTSENHNFHYISE 59
Query: 61 SGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFS 120
+ FL + E +G +P FL ++ F + YG S ++ P A D
Sbjct: 60 NDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSF--SQNSPTATYD----------- 106
Query: 121 IAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEK 170
F L+E M+Y S+P+ +K++ + Q++E KG + D IEK
Sbjct: 107 -------PFIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEK 147
>sp|Q9Y7L0|SEC22_SCHPO Protein transport protein sec22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2
Length = 215
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 20/130 (15%)
Query: 40 PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQN 99
P S + + +TF++L+D+G +L + ++S R + F +LE + +F +G
Sbjct: 44 PTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQ 103
Query: 100 EESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITE 159
P A D F + YN P L KL ++ +
Sbjct: 104 PGLRPYA--FVQFDTFMQKSKRVYN------------------TPRANDNLDKLNTELKD 143
Query: 160 VKGIMMDNIE 169
V +M NIE
Sbjct: 144 VTRVMTKNIE 153
>sp|Q84WF5|VAMPL_ARATH Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana
GN=At1g33475 PE=2 SV=1
Length = 255
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 27 NFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVK 86
N ++A CL+K P Y + TF FL+ FV+ + D+ +S FLE+++
Sbjct: 31 NNESLAALCLEKTPPFHKWYFETRGKKTFGFLMKDDFVYFAIVDDVFKKSSVLDFLEKLR 90
Query: 87 DDFKQ 91
D+ K+
Sbjct: 91 DELKE 95
>sp|B4FHF0|EFTS_MAIZE Elongation factor Ts, mitochondrial OS=Zea mays GN=EFTS PE=2 SV=1
Length = 379
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 129 FGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKNGI-GIIYMYI 187
FGP L E+M + HP ++S + +++ +TEV ++ +N++ R F L G++ Y+
Sbjct: 167 FGPELLENMPINLDHP-KLSVETTVQSAVTEVAAMVGENVKLRRGFMLSTTAHGVVSSYM 225
Query: 188 WYC 190
C
Sbjct: 226 HTC 228
>sp|Q03E09|SYK_PEDPA Lysine--tRNA ligase OS=Pediococcus pentosaceus (strain ATCC 25745 /
183-1w) GN=lysS PE=3 SV=1
Length = 498
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 72 SVGRSVPFVFLERVKDDFKQR---YGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDRE 128
+VG + F E+V+D KQ YG + E PLA + +DD F DRF + Y L E
Sbjct: 360 TVGHIINEFFEEKVQDQLKQPVFIYGHPV---EISPLAKKNAEDDRFTDRFEL-YILGNE 415
Query: 129 FGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
+G E +++++ +A E +GI D IE +
Sbjct: 416 YGNAFTELNDPIDQRARFEAQVAEREAGNDEAEGIDEDYIEAL 458
>sp|Q4KM74|SC22B_RAT Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b
PE=1 SV=3
Length = 215
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T TF+++++ G +LV+ + + + + F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+F +++G +
Sbjct: 92 HSEFDEQHGKKV 103
>sp|Q5RAI9|SC22B_PONAB Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2
SV=3
Length = 215
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T TF+++++ G +LV+ + + + + F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+F +++G +
Sbjct: 92 HSEFDEQHGKKV 103
>sp|O08547|SC22B_MOUSE Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1
SV=3
Length = 215
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T TF+++++ G +LV+ + + + + F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+F +++G +
Sbjct: 92 HSEFDEQHGKKV 103
>sp|O08595|SC22B_CRIGR Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b
PE=1 SV=3
Length = 215
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T TF+++++ G +LV+ + + + + F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+F +++G +
Sbjct: 92 HSEFDEQHGKKV 103
>sp|Q6P7L4|SC22B_XENTR Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b
PE=2 SV=1
Length = 215
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 32 AIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFK 90
A Q +KL S ++ T TF++L++ G +LV+ + + + + F +LE + +F
Sbjct: 37 AKQLFRKLNEQSPTRCTLEAGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFD 96
Query: 91 QRYGASI 97
+++G +
Sbjct: 97 EQHGKKV 103
>sp|Q5ZJW4|SC22B_CHICK Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2
SV=1
Length = 215
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T F+++++ G +LV+ + + + + F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+ +F +++G +
Sbjct: 92 QSEFDEQHGKKV 103
>sp|Q7ZV15|S22BA_DANRE Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2
SV=1
Length = 215
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T F+++++ G +L + + + + F +LE +
Sbjct: 32 KYQSQAKQLCRKLNEQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+ +F ++YGA +
Sbjct: 92 EGEFSEQYGAKV 103
>sp|O75396|SC22B_HUMAN Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1
SV=4
Length = 215
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T TF+++++ G LV+ + + +++ F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCDLVLCEAAFPKTLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+F +++G +
Sbjct: 92 HSEFDEQHGKKV 103
>sp|Q6CJA0|SEC22_KLULA Protein transport protein SEC22 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SEC22 PE=3 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 40 PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQN 99
P S+++ T +++ + V++VVA+ + R++ F +L ++ +F+ YG +
Sbjct: 43 PTSANEATVESGDFEIHYIRLNTVVYIVVAERNYPRNLAFSYLADIQQEFEHSYGGQLSK 102
Query: 100 EESHP 104
P
Sbjct: 103 SNVRP 107
>sp|Q7SXP0|S22BB_DANRE Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2
SV=1
Length = 215
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 27 NFSTIAIQCLQKL-PASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERV 85
+ + A Q +KL S ++ T +F+++++ G +LV+ + + + F +LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPNRCTLEAGSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDL 91
Query: 86 KDDFKQRYGASI 97
+ +F +++G +
Sbjct: 92 QAEFHEQHGKKV 103
>sp|O88457|SCNBA_RAT Sodium channel protein type 11 subunit alpha OS=Rattus norvegicus
GN=Scn11a PE=1 SV=1
Length = 1765
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 101 ESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQY--------CMSHPEEMSKLSK 152
E+ A ++ +D L ED F I Y + +F P + +QY + P ++K +K
Sbjct: 1585 ENFNTATEESEDPLGEDDFEIFYEVWEKFDPEASQFIQYSALSDFADALPEPLRVAKPNK 1644
Query: 153 LKAQITEVKGIMMDNIEKVRVFF 175
+ + ++ +M D + + V F
Sbjct: 1645 FQFLVMDLPMVMGDRLHCMDVLF 1667
>sp|Q9R053|SCNBA_MOUSE Sodium channel protein type 11 subunit alpha OS=Mus musculus
GN=Scn11a PE=1 SV=2
Length = 1765
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 101 ESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQY--------CMSHPEEMSKLSK 152
E+ A ++ +D L ED F I Y + +F P + +QY + P ++K ++
Sbjct: 1585 ENFNTATEESEDPLGEDDFEIFYEIWEKFDPEATQFIQYSSLSDFADALPEPLRVAKPNR 1644
Query: 153 LKAQITEVKGIMMDNIEKVRVFF 175
+ + ++ +M D + + V F
Sbjct: 1645 FQFLMMDLPMVMGDRLHCMDVLF 1667
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 44 SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESH 103
S +T++CD N LL FV L + +ER+K +F++RY + ++++
Sbjct: 1062 SYWTHACDVDQMNSLLREAFVLLHSNN----------IMERLKQEFEERYKGFLVSKKA- 1110
Query: 104 PLADDDEDDDLFEDRFSIAYNLDREFGP 131
+ +DED + +F + EF P
Sbjct: 1111 -IKANDED---LKAKFGNKSYIPLEFPP 1134
>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 OS=Mus musculus
GN=Srrm1 PE=1 SV=2
Length = 946
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 65 FLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDD 113
L+ A E++ +P FLE K++ KQR I+ E+ L DED D
Sbjct: 108 LLLSAQENIA-GIPSAFLELKKEEIKQR---QIEQEKLASLKKQDEDKD 152
>sp|P31109|SNC1_YEAST Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SNC1 PE=1 SV=1
Length = 117
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 133 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKV 171
L EH + + + S+ ++L+A+I + GIM DNI KV
Sbjct: 12 LSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKV 50
>sp|Q642F4|SC22A_RAT Vesicle-trafficking protein SEC22a OS=Rattus norvegicus GN=Sec22a
PE=2 SV=1
Length = 307
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 37 QKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGAS 96
+KL + T H NF+ G ++++ E+ + F FL+ ++ +F Y
Sbjct: 42 RKLAQFPDRCTLKTGRHNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMM 101
Query: 97 IQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRL 133
N P + D+ F R YN R ++
Sbjct: 102 KTNTAVRPYCFIEFDN--FIQRTKQRYNNPRSLSTKI 136
>sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens GN=SCN8A
PE=1 SV=1
Length = 1980
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 101 ESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYC--------MSHPEEMSKLSK 152
E+ +A ++ D L ED F Y + +F P + ++YC + HP + K +
Sbjct: 1767 ENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNT 1826
Query: 153 LKAQITEVKGIMMDNIEKVRVFF 175
++ ++ + D I + + F
Sbjct: 1827 IELIAMDLPMVSGDRIHCLDILF 1849
>sp|Q9WTU3|SCN8A_MOUSE Sodium channel protein type 8 subunit alpha OS=Mus musculus GN=Scn8a
PE=1 SV=1
Length = 1978
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 101 ESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYC--------MSHPEEMSKLSK 152
E+ +A ++ D L ED F Y + +F P + ++YC + HP + K +
Sbjct: 1765 ENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNT 1824
Query: 153 LKAQITEVKGIMMDNIEKVRVFF 175
++ ++ + D I + + F
Sbjct: 1825 IELIAMDLPMVSGDRIHCLDILF 1847
>sp|O88420|SCN8A_RAT Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus
GN=Scn8a PE=1 SV=1
Length = 1978
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 101 ESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYC--------MSHPEEMSKLSK 152
E+ +A ++ D L ED F Y + +F P + ++YC + HP + K +
Sbjct: 1765 ENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNT 1824
Query: 153 LKAQITEVKGIMMDNIEKVRVFF 175
++ ++ + D I + + F
Sbjct: 1825 IELIAMDLPMVSGDRIHCLDILF 1847
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,375,458
Number of Sequences: 539616
Number of extensions: 2907306
Number of successful extensions: 9020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8954
Number of HSP's gapped (non-prelim): 61
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)