Query 029478
Match_columns 192
No_of_seqs 121 out of 786
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 3E-44 1E-48 294.0 7.4 150 4-174 2-151 (189)
2 2nut_C Vesicle-trafficking pro 100.0 7E-37 2.4E-41 250.9 11.8 149 5-174 2-160 (196)
3 4afi_A AP-3 complex subunit de 100.0 9.9E-35 3.4E-39 235.1 15.3 119 4-142 54-172 (173)
4 2vx8_A Nucleoporin-like protei 100.0 2E-30 6.9E-35 209.1 12.2 121 3-143 43-163 (169)
5 3kyq_A YKT6, synaptobrevin hom 100.0 5.2E-31 1.8E-35 217.4 6.5 147 3-174 1-164 (199)
6 3bw6_A Synaptobrevin homolog Y 99.9 2E-26 6.9E-31 181.0 13.7 124 4-149 5-144 (144)
7 1gl2_A Endobrevin; membrane pr 98.5 1.2E-07 4E-12 64.6 3.8 32 143-174 4-35 (65)
8 2nps_A VAMP-4, vesicle-associa 98.3 1.4E-07 4.8E-12 65.8 2.0 32 143-174 3-34 (74)
9 1n7s_A Vesicle-associated memb 98.3 5.4E-07 1.9E-11 60.8 4.4 28 147-174 3-30 (63)
10 1l4a_A Synaptobrevin; snare, s 98.3 5.1E-07 1.7E-11 63.8 4.2 32 143-174 10-41 (80)
11 3b5n_A Synaptobrevin homolog 1 98.2 1E-06 3.4E-11 59.2 4.4 27 148-174 2-28 (61)
12 1sfc_A VAMP 2, protein (synapt 98.1 2.7E-06 9.2E-11 62.2 4.5 29 146-174 28-56 (96)
13 3hd7_A Vesicle-associated memb 98.1 3E-06 1E-10 61.2 4.4 28 147-174 4-31 (91)
14 2kog_A Vesicle-associated memb 97.8 5.7E-06 2E-10 62.7 1.3 29 146-174 31-59 (119)
15 3fie_C Fragment of vesicle-ass 97.8 1.3E-08 4.5E-13 62.5 -10.9 29 146-174 7-35 (38)
16 3zym_A Phosphatidylinositol-bi 97.7 1.5E-05 5.1E-10 69.2 2.3 49 126-174 244-306 (310)
17 1urq_A M-tomosyn isoform; tran 97.4 0.00011 3.7E-09 49.7 3.4 29 148-176 4-32 (63)
18 2fh5_A Signal recognition part 97.2 0.00069 2.4E-08 54.8 6.6 88 7-96 13-106 (185)
19 3tjz_C Coatomer subunit zeta-1 91.5 3.7 0.00013 31.5 11.7 88 5-93 12-105 (153)
20 2vgl_S AP-2 complex subunit si 89.4 5.3 0.00018 29.8 10.9 80 13-94 11-96 (142)
21 1w63_Q Adapter-related protein 89.3 5 0.00017 30.6 10.7 80 13-94 11-96 (158)
22 1w63_M Adaptor-related protein 88.5 2.9 9.8E-05 36.9 10.0 91 4-94 1-96 (423)
23 2vgl_M AP-2 complex subunit MU 82.4 15 0.0005 32.4 11.5 50 45-94 45-94 (435)
24 2fz0_A R-snare NYV1P, V-snare 78.9 3.2 0.00011 31.9 5.0 60 28-87 46-114 (149)
25 1utg_A Uteroglobin; steroid bi 77.7 2.5 8.4E-05 28.4 3.7 48 131-178 19-66 (70)
26 1ccd_A Clara cell 17 KD protei 77.1 3 0.0001 28.5 4.1 48 131-178 21-68 (77)
27 2j3t_C Trafficking protein par 75.1 17 0.00058 27.4 8.3 58 32-91 45-107 (145)
28 2j3t_D Trafficking protein par 69.2 45 0.0015 27.1 10.8 89 32-141 118-210 (219)
29 3lay_A Zinc resistance-associa 64.2 18 0.00061 28.5 6.5 47 131-180 99-145 (175)
30 1utr_A Uteroglobin; clara cell 62.8 4 0.00014 29.0 2.2 48 131-178 40-87 (96)
31 3cue_C Transport protein parti 61.2 43 0.0015 25.6 8.1 58 32-91 51-113 (159)
32 1zkr_A Major allergen I polype 57.9 16 0.00055 28.3 5.0 47 131-177 20-67 (153)
33 3cue_A Transport protein parti 52.4 68 0.0023 26.1 8.2 48 44-91 118-188 (219)
34 1txp_A HnRNP C, heterogeneous 50.3 20 0.00067 19.9 3.1 22 152-177 3-24 (28)
35 2j3w_A Sedlin, trafficking pro 48.7 79 0.0027 23.4 9.8 47 45-92 64-111 (142)
36 2ygg_A Sodium/hydrogen exchang 35.3 46 0.0016 22.4 3.8 23 154-176 6-28 (70)
37 3lcn_C MRNA transport factor G 34.0 48 0.0016 18.4 3.0 21 147-167 5-25 (29)
38 4a4y_A Protein MXIG; protein b 33.3 67 0.0023 23.4 4.7 43 5-59 85-127 (146)
39 2i4r_A V-type ATP synthase sub 30.0 38 0.0013 24.0 2.9 20 166-185 39-59 (102)
40 1y4m_A HERV-FRD_6P24.1 proviru 29.6 53 0.0018 20.9 3.2 31 148-179 7-38 (53)
41 1mof_A Moloney murine leukemia 24.1 76 0.0026 20.3 3.2 31 148-179 9-40 (55)
42 3aon_B V-type sodium ATPase su 23.5 58 0.002 23.5 3.0 20 166-185 31-50 (115)
43 2kfe_A Meucin-24; alpha-helix, 23.2 56 0.0019 17.8 2.1 17 149-165 6-22 (26)
44 3t98_A Nuclear pore complex pr 21.4 64 0.0022 20.3 2.4 37 123-161 13-49 (51)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=3e-44 Score=294.00 Aligned_cols=150 Identities=31% Similarity=0.555 Sum_probs=133.7
Q ss_pred ccEEEEEEEeCCeeeeeeecCcccHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHH
Q 029478 4 KGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLE 83 (192)
Q Consensus 4 m~I~Ya~Var~~~iLae~~~~~~nf~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ 83 (192)
|||+|||||||++|||||+..+|||..+|+++|+++|+.++|.++++|+|+|||++++|++|+||||++||+|+||.||+
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~ 81 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN 81 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHH
Confidence 89999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 029478 84 RVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGI 163 (192)
Q Consensus 84 ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~I 163 (192)
+|+++|.+.|+.++.++.+++ ++.+|.+.|+++|++|+ +|.+.|+|.+++++|+|||+|
T Consensus 82 ~i~~eF~~~~~~~~~~~~~~~--------------------~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~i 140 (189)
T 4b93_A 82 EVKKRFQTTYGSRAQTALPYA--------------------MNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGI 140 (189)
T ss_dssp HHHHHHHHHHGGGGGTCCTTT--------------------THHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTC
T ss_pred HHHHHHHhhccccccccCCcc--------------------ccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHH
Confidence 999999999988766554333 36789999999999996 677779999999999999999
Q ss_pred HHHhHHHHHHH
Q 029478 164 MMDNIEKVRVF 174 (192)
Q Consensus 164 M~~NIdkiL~~ 174 (192)
|++|||+||++
T Consensus 141 m~~Ni~~vl~R 151 (189)
T 4b93_A 141 MVRNIDLVAQR 151 (189)
T ss_dssp CEECCCCBCTT
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=7e-37 Score=250.91 Aligned_cols=149 Identities=21% Similarity=0.451 Sum_probs=113.8
Q ss_pred cEEEEEEEeC--CeeeeeeecCc---cc----HHHHHHHHHhcCCC-CCCeeEEEECCeEEEEEeeCCEEEEEEecCCCC
Q 029478 5 GLIYSFVSKG--TVVLAEHTSYS---GN----FSTIAIQCLQKLPA-SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVG 74 (192)
Q Consensus 5 ~I~Ya~Var~--~~iLae~~~~~---~n----f~~ia~~iL~ki~~-~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp 74 (192)
||+|++|||+ .+|||++++.+ |+ |.++++.+++++|+ .++|.+++.++|+|||+.++|++|+||||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 7999999999 79999998643 44 89999999999997 578999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcCCchhhhHHHHHH
Q 029478 75 RSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLK 154 (192)
Q Consensus 75 ~rvaF~fL~ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~~p~~~Dkl~klq 154 (192)
+++||.||++|+++|...|+..+.+ ...|+ ++ .+|.+.|+++|++|| +|.+.|+|.+++
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~~~~~-~~~~~------------------~~-~~f~~~l~~~~~~y~-~~~~~d~l~~~~ 140 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGKKVPT-VSRPY------------------SF-IEFDTFIQKTKKLYI-DSRARRNLGSIN 140 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTT-CCSTT------------------TT-GGGHHHHHHHHTTTS-CCC---------
T ss_pred hHHHHHHHHHHHHHHHHhccchhcc-ccCCC------------------ch-HHHHHHHHHHHHHhc-CccchhHHHHHH
Confidence 9999999999999999999865432 22333 33 489999999999995 787789999999
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 029478 155 AQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 155 ~ei~eVk~IM~~NIdkiL~~ 174 (192)
.+|+|||+||++||++||++
T Consensus 141 ~~l~ev~~im~~ni~~vl~R 160 (196)
T 2nut_C 141 TELQDVQRIMVANIEEVLQR 160 (196)
T ss_dssp --------CCEEEHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999986
No 3
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=235.10 Aligned_cols=119 Identities=30% Similarity=0.590 Sum_probs=110.8
Q ss_pred ccEEEEEEEeCCeeeeeeecCcccHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHH
Q 029478 4 KGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLE 83 (192)
Q Consensus 4 m~I~Ya~Var~~~iLae~~~~~~nf~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ 83 (192)
|+|+|||||||++|||||+..+|||..+|+++|+|+|+.++|.+++.++|+|||++++|++|+||||++||+++||+||+
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLe 133 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN 133 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHH
Confidence 68999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcC
Q 029478 84 RVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMS 142 (192)
Q Consensus 84 ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~ 142 (192)
+|+++|.++|+.++.++.+ |+++.+|++.|+++|++||+
T Consensus 134 dI~~eF~~~yg~~~~ta~p--------------------ya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 134 EVKKRFQTTYGSRAQTALP--------------------YAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHGGGGGTCCT--------------------TTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhccC--------------------cchhHHHHHHHHHHHHHhcC
Confidence 9999999999876654433 45588999999999999984
No 4
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=2e-30 Score=209.09 Aligned_cols=121 Identities=31% Similarity=0.603 Sum_probs=104.8
Q ss_pred CccEEEEEEEeCCeeeeeeecCcccHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHH
Q 029478 3 QKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFL 82 (192)
Q Consensus 3 qm~I~Ya~Var~~~iLae~~~~~~nf~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL 82 (192)
+|+|+|++|+||++|||||++.++||..+++++++|+++.++|.+++.++|+|||++++|++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 48999999999999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcCC
Q 029478 83 ERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSH 143 (192)
Q Consensus 83 ~ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~~ 143 (192)
++|+++|.++|+..+.++ .| |+++.+|.+.|++.|++||++
T Consensus 123 edI~~eF~~~y~~~~~~a--~p------------------ysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTA--LP------------------YAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTTGGGTC--CT------------------TTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhhhhhcc--CC------------------cchhHHHHHHHHHHHHHhcCc
Confidence 999999999998765443 23 334679999999999999754
No 5
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.96 E-value=5.2e-31 Score=217.44 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=123.8
Q ss_pred CccEEEEEEEeCC----eeeeeeecCc----------ccHHH-HHHHHHhcCCCCCCeeEEEECCeEEE-EEeeCCEEEE
Q 029478 3 QKGLIYSFVSKGT----VVLAEHTSYS----------GNFST-IAIQCLQKLPASSSKYTYSCDGHTFN-FLLDSGFVFL 66 (192)
Q Consensus 3 qm~I~Ya~Var~~----~iLae~~~~~----------~nf~~-ia~~iL~ki~~~~~k~s~~~~~~~fh-~l~~~gl~yl 66 (192)
+|.|++-+|.+.. ++|+...+.+ ++|.. +++.+++|+++ ++|.++++++|.|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 5778898998853 5777665532 56776 56799999988 57999999999999 8999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhhccccc-cccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcCCch
Q 029478 67 VVADESVGRSVPFVFLERVKDDFKQRYGASIQ-NEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPE 145 (192)
Q Consensus 67 citd~~yp~rvaF~fL~ei~~~F~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~~p~ 145 (192)
||||++||+|+||.||++|+++|.+.|+...+ .....|+ .| +.|+++|++|| ||.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~----------------------~f-~~l~~~m~~Y~-dp~ 135 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI----------------------HY-TALDGHLSRYQ-NPR 135 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC----------------------CC-CTHHHHHHHTT-SGG
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc----------------------cc-HHHHHHHHHhC-Cch
Confidence 99999999999999999999999999985433 2222332 35 68999998895 898
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 146 EMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 146 ~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
++|+|.++|.||+|||+||++|||++|+|
T Consensus 136 ~~d~l~~~q~el~evk~iM~~NI~~vl~R 164 (199)
T 3kyq_A 136 EADPMSKVQAELDETKIILHNTMESLLER 164 (199)
T ss_dssp GCCCCHHHHHHHHTCCCEEESSGGGTSCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999874
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.94 E-value=2e-26 Score=180.97 Aligned_cols=124 Identities=12% Similarity=0.164 Sum_probs=98.5
Q ss_pred ccEEEEEEEeC----CeeeeeeecCc----------ccH-HHHHHHHHhcCCCCCCeeEEEECCeEEEEE-eeCCEEEEE
Q 029478 4 KGLIYSFVSKG----TVVLAEHTSYS----------GNF-STIAIQCLQKLPASSSKYTYSCDGHTFNFL-LDSGFVFLV 67 (192)
Q Consensus 4 m~I~Ya~Var~----~~iLae~~~~~----------~nf-~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l-~~~gl~ylc 67 (192)
|.|+|.+|+|+ .++|+++++.+ ++| ..++++|++|+|++ +|.++++++|+|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 45777779998 58999999866 666 67999999999995 899999999999999 889999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcCCchhh
Q 029478 68 VADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEM 147 (192)
Q Consensus 68 itd~~yp~rvaF~fL~ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~~p~~~ 147 (192)
|||++||+|+||.||++|+++|.++|+...+.....+. + ...| +.|++.|++| |||.++
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~------------------~-~~~f-~~l~~~i~kY-qdp~~a 142 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETN------------------D-ALKM-KQLDTYISKY-QDPSQA 142 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCC------------------G-GGCC-THHHHHHHHT-SCC---
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhccccc------------------C-Ccch-HHHHHHHHHh-Cchhhc
Confidence 99999999999999999999999999876232222211 0 1245 7899999889 689887
Q ss_pred hH
Q 029478 148 SK 149 (192)
Q Consensus 148 Dk 149 (192)
|+
T Consensus 143 D~ 144 (144)
T 3bw6_A 143 DA 144 (144)
T ss_dssp --
T ss_pred CC
Confidence 75
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.45 E-value=1.2e-07 Score=64.63 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=25.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 143 HPEEMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 143 ~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
+|.+.|+|.+++.+|+||+.||++||++||++
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~R 35 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILAR 35 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999985
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=98.34 E-value=1.4e-07 Score=65.79 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=27.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 143 HPEEMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 143 ~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
+|.+.|+|.+++.+|+||++||++||++||++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~R 34 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIER 34 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667999999999999999999999999996
No 9
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.32 E-value=5.4e-07 Score=60.79 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 147 MSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 147 ~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
.|+|.+++.+|++|++||++||++||++
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~R 30 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLER 30 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999999999986
No 10
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.30 E-value=5.1e-07 Score=63.82 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=29.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 143 HPEEMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 143 ~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
+|.+.|+|.+++.+|+||++||++||++||++
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeR 41 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLER 41 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566999999999999999999999999996
No 11
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.24 E-value=1e-06 Score=59.19 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 148 SKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 148 Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
|+|.+++.+|+||++||++||++||++
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~R 28 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAER 28 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999985
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.10 E-value=2.7e-06 Score=62.16 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 146 EMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 146 ~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
+.|+|.+++.+|+||++||++||++||++
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeR 56 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLER 56 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35999999999999999999999999996
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.08 E-value=3e-06 Score=61.25 Aligned_cols=28 Identities=39% Similarity=0.464 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 147 MSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 147 ~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
.|++.++|+||+||++||++|||++|++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~R 31 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLER 31 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4999999999999999999999999986
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.77 E-value=5.7e-06 Score=62.66 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 146 EMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 146 ~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
+.|+|.++|.||+||++||++||+++|+|
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeR 59 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLER 59 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45999999999999999999999999975
No 15
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=97.77 E-value=1.3e-08 Score=62.51 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 146 EMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 146 ~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
+.|++.++|.||+||++||++||+++|+|
T Consensus 7 ~~d~l~~vq~qvdeVk~IM~~NIdkvLeR 35 (38)
T 3fie_C 7 SNRRLQQTQAQVDEVVDIMRVNVDKVLER 35 (38)
T ss_dssp CCCSSCEESCCCCCSCCCCTTTHHHHSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHc
Confidence 34899999999999999999999999874
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=97.66 E-value=1.5e-05 Score=69.19 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHhcC--------------CchhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 029478 126 DREFGPRLKEHMQYCMS--------------HPEEMSKLSKLKAQITEVKGIMMDNIEKVRVF 174 (192)
Q Consensus 126 ~~~F~~~Lk~lm~~yn~--------------~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~ 174 (192)
...|..+..++.++|.. .+...|++.++|+||+||++||++|||++|++
T Consensus 244 ykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~r 306 (310)
T 3zym_A 244 YKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILAR 306 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 34566666666666531 01234899999999999999999999999986
No 17
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.40 E-value=0.00011 Score=49.70 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 029478 148 SKLSKLKAQITEVKGIMMDNIEKVRVFFL 176 (192)
Q Consensus 148 Dkl~klq~ei~eVk~IM~~NIdkiL~~~~ 176 (192)
.+|.+++.++++|++||.+||++|+++--
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGe 32 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQ 32 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999753
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.20 E-value=0.00069 Score=54.84 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=63.7
Q ss_pred EEEEEEeCCeeeeeeecCcc----cHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeC--CEEEEEEecCCCCcccHHH
Q 029478 7 IYSFVSKGTVVLAEHTSYSG----NFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDS--GFVFLVVADESVGRSVPFV 80 (192)
Q Consensus 7 ~Ya~Var~~~iLae~~~~~~----nf~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~--gl~ylcitd~~yp~rvaF~ 80 (192)
+.+.+.+|.+||..++.... ....+++.+|=.=.. ...++.+++|..+|..++ |++|+++-.+-.+-.-.=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 57889999999999864332 345566666543222 234688899999999876 8999999877777777778
Q ss_pred HHHHHHHHHHhhhccc
Q 029478 81 FLERVKDDFKQRYGAS 96 (192)
Q Consensus 81 fL~ei~~~F~~~~~~~ 96 (192)
||++++..|...|+..
T Consensus 91 LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTE 106 (185)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999654
No 19
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=91.48 E-value=3.7 Score=31.48 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=62.6
Q ss_pred cEEEEEEE--eCCeeeeeeecCc-cc---HHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccH
Q 029478 5 GLIYSFVS--KGTVVLAEHTSYS-GN---FSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVP 78 (192)
Q Consensus 5 ~I~Ya~Va--r~~~iLae~~~~~-~n---f~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rva 78 (192)
||..-+|. +|.++|+-+-... .+ -..+.+.+.+++.+.+ .-.+..+++.+.|....++.|+++++.+.+.-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 45555554 4568888775431 12 1223334444443322 2456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029478 79 FVFLERVKDDFKQRY 93 (192)
Q Consensus 79 F~fL~ei~~~F~~~~ 93 (192)
+.||..+.+-+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988877
No 20
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=89.41 E-value=5.3 Score=29.78 Aligned_cols=80 Identities=9% Similarity=0.113 Sum_probs=56.4
Q ss_pred eCCeeeeeeec-Cccc----H-HHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHH
Q 029478 13 KGTVVLAEHTS-YSGN----F-STIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVK 86 (192)
Q Consensus 13 r~~~iLae~~~-~~~n----f-~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ei~ 86 (192)
+|.++|+-+-. .++. + +.+-+.++.+- + ..--.++.+++.+.|...+++.++|+++.+.+.-..+.||..+.
T Consensus 11 ~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~-~-~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~v 88 (142)
T 2vgl_S 11 AGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD-A-KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFV 88 (142)
T ss_dssp TSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC-T-TSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC-C-CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577776543 2221 1 22344444331 1 23345677899999988999999999999999999999999999
Q ss_pred HHHHhhhc
Q 029478 87 DDFKQRYG 94 (192)
Q Consensus 87 ~~F~~~~~ 94 (192)
+-+..-++
T Consensus 89 e~l~~yf~ 96 (142)
T 2vgl_S 89 EVLNEYFH 96 (142)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 98887765
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.28 E-value=5 Score=30.64 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=55.9
Q ss_pred eCCeeeeeeec-CcccHH-HH----HHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHH
Q 029478 13 KGTVVLAEHTS-YSGNFS-TI----AIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVK 86 (192)
Q Consensus 13 r~~~iLae~~~-~~~nf~-~i----a~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ei~ 86 (192)
+|.++|+-+-. ....++ .+ .+.+..+ ++ ..--.++.+++.+.|...+++.|+|+++.+.+.-..+.||..+.
T Consensus 11 ~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~-~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~v 88 (158)
T 1w63_Q 11 QGKLRLQKWYLATSDKERKKMVRELMQVVLAR-KP-KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYV 88 (158)
T ss_dssp SSCEEEEEESSCCCHHHHHHHHHHHHHHHHTS-CS-SSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHhcc-CC-CCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHH
Confidence 34577776543 232222 22 3333333 11 22345677899999998999999999999999999999999999
Q ss_pred HHHHhhhc
Q 029478 87 DDFKQRYG 94 (192)
Q Consensus 87 ~~F~~~~~ 94 (192)
+-+..-++
T Consensus 89 evl~~yf~ 96 (158)
T 1w63_Q 89 ELLDKYFG 96 (158)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHc
Confidence 88887665
No 22
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.52 E-value=2.9 Score=36.93 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=62.1
Q ss_pred ccEEEEEEEe--CCeeeeeeec--Cccc-HHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccH
Q 029478 4 KGLIYSFVSK--GTVVLAEHTS--YSGN-FSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVP 78 (192)
Q Consensus 4 m~I~Ya~Var--~~~iLae~~~--~~~n-f~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rva 78 (192)
|||...+|.- |.++|+-+-. ...+ .+..-+.++.+......--.++.+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 5666666654 3466665432 1222 333445555543211223456788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029478 79 FVFLERVKDDFKQRYG 94 (192)
Q Consensus 79 F~fL~ei~~~F~~~~~ 94 (192)
+.||..+.+-+..-++
T Consensus 81 le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998887664
No 23
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=82.42 E-value=15 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=44.3
Q ss_pred eeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 029478 45 KYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYG 94 (192)
Q Consensus 45 k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ei~~~F~~~~~ 94 (192)
--.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 45 ~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 45 SPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999988887765
No 24
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=78.94 E-value=3.2 Score=31.87 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=45.6
Q ss_pred HHH-HHHHHHhcCCCC-CCe---eEEE-ECCeEEEEEe---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 029478 28 FST-IAIQCLQKLPAS-SSK---YTYS-CDGHTFNFLL---DSGFVFLVVADESVGRSVPFVFLERVKD 87 (192)
Q Consensus 28 f~~-ia~~iL~ki~~~-~~k---~s~~-~~~~~fh~l~---~~gl~ylcitd~~yp~rvaF~fL~ei~~ 87 (192)
|.. +-..|++++-|- +.| .+.. .+||-+.|.. +.|.+++|.|..+.|+-.|-..|.+++.
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 444 556677777654 334 3333 4799998887 3588999999999999999999999876
No 25
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=77.70 E-value=2.5 Score=28.42 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 029478 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKN 178 (192)
Q Consensus 131 ~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~ 178 (192)
+..+..++.||.+|...+...++|+=++....-=..||.++++.+++.
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI~~S 66 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIVKS 66 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC
Confidence 446677788988888889999999999988888899999999988753
No 26
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=77.12 E-value=3 Score=28.54 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 029478 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKN 178 (192)
Q Consensus 131 ~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~ 178 (192)
+..+..++.||.+|.......++|+=++....-=..||.++++.+++.
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~kI~~S 68 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTS 68 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC
Confidence 456677788988888889999999999998888899999999988754
No 27
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=75.07 E-value=17 Score=27.37 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHhcCCCC---CCeeEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHH-HHHHh
Q 029478 32 AIQCLQKLPAS---SSKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVK-DDFKQ 91 (192)
Q Consensus 32 a~~iL~ki~~~---~~k~s~~~~~~~fh~l~-~~gl~ylcitd~~yp~rvaF~fL~ei~-~~F~~ 91 (192)
++.+.+++.|. ..-.+++-++|..|+.. -.|+-|+.+||+..+. .-.||.+|. +-|.+
T Consensus 45 l~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 45 IRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp HHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 35566666653 24577788899887554 5799999999997554 557888888 56655
No 28
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=69.15 E-value=45 Score=27.14 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHhcCCCCC---CeeEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhccccccccCCCCCC
Q 029478 32 AIQCLQKLPASS---SKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAD 107 (192)
Q Consensus 32 a~~iL~ki~~~~---~k~s~~~~~~~fh~l~-~~gl~ylcitd~~yp~rvaF~fL~ei~~~F~~~~~~~~~~~~~~~l~~ 107 (192)
...+.+++.|.+ .-..++.+.|..|+.. -.|+-|+.+||..- .-.-.||.+|.+-|.+.--....-....|.
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~--~~ir~~l~~IyelYvd~V~kNPFY~~~~pI-- 193 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQ--AGIDSLLRKIYEIYSDFALKNPFYSLEMPI-- 193 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTC--CCHHHHHHHHHHHHHHHHTTCTTCCTTSCC--
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCc--hHHHHHHHHHHHHHHHHhccCCCCCCCCcc--
Confidence 355566776632 3467788898888654 47999999999873 346678999987776532111100011122
Q ss_pred CCCCchhhhhhhhhccccccchhHHHHHHHHHhc
Q 029478 108 DDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCM 141 (192)
Q Consensus 108 ~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn 141 (192)
. ...|...++++++.++
T Consensus 194 --------------~---s~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 194 --------------R---CELFDQNLKLALEVAE 210 (219)
T ss_dssp --------------C---CHHHHHHHHHHHHHHT
T ss_pred --------------c---hHHHHHHHHHHHHHhh
Confidence 1 4568888998887664
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=64.17 E-value=18 Score=28.45 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCc
Q 029478 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKNGI 180 (192)
Q Consensus 131 ~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~~~ 180 (192)
..|..++.. .+|++ .++.++.+++.+++.-|.+.--+.-..+-|.||
T Consensus 99 ~EL~aL~~a--~~~De-akI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGi 145 (175)
T 3lay_A 99 YEYNALLTA--SSPDT-AKINAVAKEMESLGQKLDEQRVKRDVAMAQAGI 145 (175)
T ss_dssp HHHHHHHTS--SSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC--CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456666643 45655 899999999999999999988888888888866
No 30
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=62.81 E-value=4 Score=29.01 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 029478 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKN 178 (192)
Q Consensus 131 ~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~ 178 (192)
+..++.++.||.+|...+...++|+=+|+...-=..||.++++.+++.
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~I~~S 87 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTS 87 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC
Confidence 456667788988888888999999999999888899999999988754
No 31
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=61.15 E-value=43 Score=25.57 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=41.6
Q ss_pred HHHHHhcCCCCC---CeeEEEECCeEEEEEe-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHh
Q 029478 32 AIQCLQKLPASS---SKYTYSCDGHTFNFLL-DSGFVFLVVADESVGRSVPFVFLERVKD-DFKQ 91 (192)
Q Consensus 32 a~~iL~ki~~~~---~k~s~~~~~~~fh~l~-~~gl~ylcitd~~yp~rvaF~fL~ei~~-~F~~ 91 (192)
.+.+.+++.|.+ .-..++-+.|..|+.. -.|+-|+++||...+. .-.+|.+|.. -|.+
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence 466677777653 4566667888888665 4799999999987553 4467888886 6654
No 32
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=57.88 E-value=16 Score=28.30 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q 029478 131 PRLKEHMQYCMSHPEEMSKLSKLKAQIT-EVKGIMMDNIEKVRVFFLK 177 (192)
Q Consensus 131 ~~Lk~lm~~yn~~p~~~Dkl~klq~ei~-eVk~IM~~NIdkiL~~~~~ 177 (192)
+..+..++.||.+|....+..++|+=++ ....-=..||.++|+.+++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI~~ 67 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKIYT 67 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHc
Confidence 3466677888888888889999999999 7777777888888888774
No 33
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=52.43 E-value=68 Score=26.12 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=33.9
Q ss_pred CeeEEEECCeEEEEE-eeCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHh
Q 029478 44 SKYTYSCDGHTFNFL-LDSGFVFLVVADESVGR----------------------SVPFVFLERVKDDFKQ 91 (192)
Q Consensus 44 ~k~s~~~~~~~fh~l-~~~gl~ylcitd~~yp~----------------------rvaF~fL~ei~~~F~~ 91 (192)
.-..+.-+.|..|+. .-.|+-|++++|...+. ...-.||.+|..-|.+
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 345667778777754 45799999999997733 3346788888877765
No 34
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=50.28 E-value=20 Score=19.92 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 029478 152 KLKAQITEVKGIMMDNIEKVRVFFLK 177 (192)
Q Consensus 152 klq~ei~eVk~IM~~NIdkiL~~~~~ 177 (192)
.++.|+.++| +|||.+|+.+-|
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHh
Confidence 4667777765 577888877654
No 35
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=48.68 E-value=79 Score=23.35 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=33.0
Q ss_pred eeEEEECCeEEEEE-eeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhh
Q 029478 45 KYTYSCDGHTFNFL-LDSGFVFLVVADESVGRSVPFVFLERVKDDFKQR 92 (192)
Q Consensus 45 k~s~~~~~~~fh~l-~~~gl~ylcitd~~yp~rvaF~fL~ei~~~F~~~ 92 (192)
+.+...++|..|+. .-.|+=|+.++|.. .....-.||.+|.+-|.+.
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~ 111 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKF 111 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHH
Confidence 45566678877754 55799999999974 2334557888888777653
No 36
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=35.26 E-value=46 Score=22.42 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 029478 154 KAQITEVKGIMMDNIEKVRVFFL 176 (192)
Q Consensus 154 q~ei~eVk~IM~~NIdkiL~~~~ 176 (192)
..+++++++|+..|+.++-++..
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999988765
No 37
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=33.96 E-value=48 Score=18.37 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 029478 147 MSKLSKLKAQITEVKGIMMDN 167 (192)
Q Consensus 147 ~Dkl~klq~ei~eVk~IM~~N 167 (192)
.+|+.-++..|+|-+.|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999998776
No 38
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=33.31 E-value=67 Score=23.44 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=32.8
Q ss_pred cEEEEEEEeCCeeeeeeecCcccHHHHHHHHHhcCCCCCCeeEEEECCeEEEEEe
Q 029478 5 GLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLL 59 (192)
Q Consensus 5 ~I~Ya~Var~~~iLae~~~~~~nf~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~ 59 (192)
+|+|..|+++. +|.+++..|+ ++.-+.+--++++++..||...
T Consensus 85 giiyltiskdn--icqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccCc----------EeeccccccceeecceEeehhc
Confidence 58898888876 5888887663 4555556788999999999763
No 39
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=29.99 E-value=38 Score=24.04 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHc-CcceEEE
Q 029478 166 DNIEKVRVFFLKN-GIGIIYM 185 (192)
Q Consensus 166 ~NIdkiL~~~~~~-~~~~~~~ 185 (192)
+.+++.++.+++. ++|||++
T Consensus 39 ee~~~~~~~l~~~~digIIlI 59 (102)
T 2i4r_A 39 EEIVKAVEDVLKRDDVGVVIM 59 (102)
T ss_dssp HHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHHhhCCCeEEEEE
Confidence 3455666777777 8999986
No 40
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=29.57 E-value=53 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHcC
Q 029478 148 SKLSKLKAQITEVKGIMMDNIEKVRVFF-LKNG 179 (192)
Q Consensus 148 Dkl~klq~ei~eVk~IM~~NIdkiL~~~-~~~~ 179 (192)
+.|..++++++-+.++..+| ...|+++ ++.|
T Consensus 7 ~sl~~l~~ql~sla~vvlQN-RraLDlL~a~~G 38 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQN-RRGLDMLTAAQG 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 78999999999999999999 4566643 4444
No 41
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=24.10 E-value=76 Score=20.31 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHcC
Q 029478 148 SKLSKLKAQITEVKGIMMDNIEKVRVFF-LKNG 179 (192)
Q Consensus 148 Dkl~klq~ei~eVk~IM~~NIdkiL~~~-~~~~ 179 (192)
+.|..++++++-+.++..+| ...|+++ ++.|
T Consensus 9 ~si~~l~~ql~sla~vvlQN-RraLD~L~a~~G 40 (55)
T 1mof_A 9 KSISNLEKSLTSLSEVVLQN-RRGLDLLFLKEG 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 78999999999999999999 4556643 4444
No 42
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=23.54 E-value=58 Score=23.55 Aligned_cols=20 Identities=35% Similarity=0.487 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHcCcceEEE
Q 029478 166 DNIEKVRVFFLKNGIGIIYM 185 (192)
Q Consensus 166 ~NIdkiL~~~~~~~~~~~~~ 185 (192)
+.+++.++.+++.++|||++
T Consensus 31 ee~~~~~~~l~~~digIIlI 50 (115)
T 3aon_B 31 TEIRKTIDEMAKNEYGVIYI 50 (115)
T ss_dssp HHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHhcCceEEEE
Confidence 44566677777779999986
No 43
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=23.22 E-value=56 Score=17.81 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029478 149 KLSKLKAQITEVKGIMM 165 (192)
Q Consensus 149 kl~klq~ei~eVk~IM~ 165 (192)
-+.+|+..+.++|+-|.
T Consensus 6 i~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678888888887764
No 44
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=21.43 E-value=64 Score=20.31 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=18.3
Q ss_pred cccccchhHHHHHHHHHhcCCchhhhHHHHHHHHHHHHH
Q 029478 123 YNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVK 161 (192)
Q Consensus 123 ~~~~~~F~~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk 161 (192)
|.++.+....|++.++. |...=.--+.-+++++++++
T Consensus 13 y~lD~~~~~eik~~L~~--QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 13 YYIDADLLREIKQHLKQ--QQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHhh
Confidence 44566666677776643 22111123344555555554
Done!