Query 029478
Match_columns 192
No_of_seqs 121 out of 786
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 22:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ifqa_ d.110.4.1 (A:) Sec22b 99.9 3.6E-26 2.6E-30 174.6 15.2 116 5-140 1-126 (127)
2 d1ioua_ d.110.4.1 (A:) Synapto 99.9 2.9E-22 2.1E-26 154.9 11.8 124 4-149 1-140 (140)
3 d2fh5a1 d.110.4.4 (A:1-129) Si 97.5 0.00016 1.2E-08 53.5 7.6 88 7-96 4-97 (129)
4 d2vglm2 d.110.4.2 (M:1-141) Mu 95.5 0.073 5.3E-06 38.2 10.4 51 44-94 44-94 (141)
5 d2vgls_ d.110.4.2 (S:) Sigma2 94.2 0.36 2.6E-05 34.6 11.2 49 47-95 49-97 (142)
6 d2j3wa1 d.110.4.3 (A:1-140) Se 68.7 16 0.0012 25.6 9.2 87 5-92 4-109 (140)
7 d1utga_ a.101.1.1 (A:) Uterogl 61.0 4.5 0.00033 25.8 3.7 46 133-178 21-66 (70)
8 d1ccda_ a.101.1.1 (A:) Clara c 57.6 4.9 0.00035 26.1 3.5 46 133-178 23-68 (77)
9 d2f06a1 d.58.18.11 (A:71-141) 37.9 16 0.0011 22.6 3.5 21 168-188 13-33 (71)
10 d1in4a1 a.4.5.11 (A:255-329) H 36.1 15 0.0011 23.4 3.2 43 131-180 9-52 (75)
11 d1y8oa1 a.29.5.1 (A:13-176) Py 32.7 14 0.001 26.8 3.0 51 126-182 93-149 (164)
12 d2jf2a1 b.81.1.1 (A:1-262) UDP 30.3 11 0.00081 28.8 2.1 35 148-183 227-261 (262)
13 d2i4ra1 c.149.1.1 (A:4-79) V-t 21.3 35 0.0025 21.2 2.9 18 168-185 30-48 (76)
14 d1sa3a_ c.52.1.23 (A:) Restric 20.2 22 0.0016 27.6 2.0 46 132-181 146-191 (262)
15 g1avo.1 a.24.8.1 (A:,B:) Prote 20.2 82 0.006 23.3 5.4 25 148-172 172-196 (200)
No 1
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.94 E-value=3.6e-26 Score=174.63 Aligned_cols=116 Identities=18% Similarity=0.437 Sum_probs=100.8
Q ss_pred cEEEEEEEeCC--eeeeeeecCcc----c---HHHHHHHHHhcCCCC-CCeeEEEECCeEEEEEeeCCEEEEEEecCCCC
Q 029478 5 GLIYSFVSKGT--VVLAEHTSYSG----N---FSTIAIQCLQKLPAS-SSKYTYSCDGHTFNFLLDSGFVFLVVADESVG 74 (192)
Q Consensus 5 ~I~Ya~Var~~--~iLae~~~~~~----n---f~~ia~~iL~ki~~~-~~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp 74 (192)
+|+|++|||+. ++|||+++.++ + +..+|+.+++|++|+ ++|.+++.++|+|||++++|++|+||||++||
T Consensus 1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~ 80 (127)
T d1ifqa_ 1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 80 (127)
T ss_dssp CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence 58999999985 89999986543 2 445899999999876 58999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHh
Q 029478 75 RSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYC 140 (192)
Q Consensus 75 ~rvaF~fL~ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~y 140 (192)
+++||.||++|+++|.+.|+.++.++ .+|++ +.+|...|++.++.|
T Consensus 81 ~~laF~fLeei~~eF~~~y~~~i~~~-~rpy~-------------------Fi~Fd~~iqk~k~~y 126 (127)
T d1ifqa_ 81 KKLAFAYLEDLHSEFDEQHGKKVPTV-SRPYS-------------------FIEFDTFIQKTKKLY 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTC-CSTTT-------------------TGGGHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhhhhhcc-cCCcc-------------------hHHHHHHHHHHHHhc
Confidence 99999999999999999998765444 46765 568999999998765
No 2
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.87 E-value=2.9e-22 Score=154.85 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=99.1
Q ss_pred ccEEEEEEEeC--C--eeeeeeecCc----------ccHHH-HHHHHHhcCCCCCCeeEEEECCeEEE-EEeeCCEEEEE
Q 029478 4 KGLIYSFVSKG--T--VVLAEHTSYS----------GNFST-IAIQCLQKLPASSSKYTYSCDGHTFN-FLLDSGFVFLV 67 (192)
Q Consensus 4 m~I~Ya~Var~--~--~iLae~~~~~----------~nf~~-ia~~iL~ki~~~~~k~s~~~~~~~fh-~l~~~gl~ylc 67 (192)
|.|++..|.|. + ++|+...+.+ ++|.. ++|++++|++++ +|.++++++|+|| |+.++|++|+|
T Consensus 1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g-~r~sv~~~~y~~h~yv~~~gl~~l~ 79 (140)
T d1ioua_ 1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-ERQSIEEGNYIGHVYARSEGICGVL 79 (140)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSS-SEEEEEETTEEEEEECCSSSCEEEE
T ss_pred CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCC-ceEEEEcCCeEEEEEEeeCCEEEEE
Confidence 66788888885 2 6787776643 23333 899999999995 7999999999999 67789999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHhcCCchhh
Q 029478 68 VADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLADDDEDDDLFEDRFSIAYNLDREFGPRLKEHMQYCMSHPEEM 147 (192)
Q Consensus 68 itd~~yp~rvaF~fL~ei~~~F~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~F~~~Lk~lm~~yn~~p~~~ 147 (192)
|||.+||+|+||.||++|.++|.++|+...+....... +..+.+.|+++|++| |||.++
T Consensus 80 i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~~--------------------~~~~~~~l~~~l~kY-QdP~~a 138 (140)
T d1ioua_ 80 ITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETN--------------------DALKMKQLDTYISKY-QDPSQA 138 (140)
T ss_dssp EBCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCCC--------------------TTTSCHHHHHHHHHT-TSSCGG
T ss_pred EECCCcchHHHHHHHHHHHHHHHHHcChHhhhhhhccc--------------------cccchHHHHHHHHHh-Cchhhc
Confidence 99999999999999999999999999876554332221 234568899999888 799887
Q ss_pred hH
Q 029478 148 SK 149 (192)
Q Consensus 148 Dk 149 (192)
|.
T Consensus 139 Da 140 (140)
T d1ioua_ 139 DA 140 (140)
T ss_dssp GC
T ss_pred cC
Confidence 73
No 3
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.48 E-value=0.00016 Score=53.48 Aligned_cols=88 Identities=18% Similarity=0.315 Sum_probs=64.1
Q ss_pred EEEEEEeCCeeeeeeecCccc----HHHHHHHHHhcCCCCCCeeEEEECCeEEEEEeeC--CEEEEEEecCCCCcccHHH
Q 029478 7 IYSFVSKGTVVLAEHTSYSGN----FSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDS--GFVFLVVADESVGRSVPFV 80 (192)
Q Consensus 7 ~Ya~Var~~~iLae~~~~~~n----f~~ia~~iL~ki~~~~~k~s~~~~~~~fh~l~~~--gl~ylcitd~~yp~rvaF~ 80 (192)
..+.+.+|.+||..|+..+.+ ...+.+.++=.=.. ...++.+++|+.+|..++ |++|+|+-.+-.+-.-.=.
T Consensus 4 ~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER~--~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~yvd~ 81 (129)
T d2fh5a1 4 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 81 (129)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheeccc--CCCceeECCEEEEEEEeccCCEEEEEEEhhhhchHHHHH
Confidence 568899999999998754433 44455555543222 235588899999999876 7999999887777777778
Q ss_pred HHHHHHHHHHhhhccc
Q 029478 81 FLERVKDDFKQRYGAS 96 (192)
Q Consensus 81 fL~ei~~~F~~~~~~~ 96 (192)
||++++..|.+.|+.+
T Consensus 82 lL~~i~~~F~~~y~~~ 97 (129)
T d2fh5a1 82 LIDDVHRLFRDKYRTE 97 (129)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999754
No 4
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=95.51 E-value=0.073 Score=38.23 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=45.8
Q ss_pred CeeEEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhc
Q 029478 44 SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYG 94 (192)
Q Consensus 44 ~k~s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ei~~~F~~~~~ 94 (192)
..-.++.+++.|.|...+++.++|+|+.+.+.-..+.||..+.+-+..-++
T Consensus 44 ~~pi~~~~~~~~~~~~~~~l~~v~v~~~~~n~l~~~e~L~~~~~~l~~y~~ 94 (141)
T d2vglm2 44 RSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (141)
T ss_dssp CCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999999999987765
No 5
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.22 E-value=0.36 Score=34.59 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=44.7
Q ss_pred EEEECCeEEEEEeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhcc
Q 029478 47 TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGA 95 (192)
Q Consensus 47 s~~~~~~~fh~l~~~gl~ylcitd~~yp~rvaF~fL~ei~~~F~~~~~~ 95 (192)
.++.+++.|.|...+++.++++|+.+.+.-..+.||..+.+-+..-++.
T Consensus 49 i~~~~~~~~vy~~~~~l~~v~~~~~~~n~l~~~e~L~~~~~~l~~~~~~ 97 (142)
T d2vgls_ 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHN 97 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred eEEECCEEEEEEEECCEEEEEEECCCccHHHHHHHHHHHHHHHHHHHcc
Confidence 6788999999999999999999999999999999999999998876653
No 6
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=68.68 E-value=16 Score=25.57 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=51.9
Q ss_pred cEEEEEEEeCCeeeee--eecCcc-----c------HH-HHHHHHHhcCCCCC----CeeEEEECCeEEEEE-eeCCEEE
Q 029478 5 GLIYSFVSKGTVVLAE--HTSYSG-----N------FS-TIAIQCLQKLPASS----SKYTYSCDGHTFNFL-LDSGFVF 65 (192)
Q Consensus 5 ~I~Ya~Var~~~iLae--~~~~~~-----n------f~-~ia~~iL~ki~~~~----~k~s~~~~~~~fh~l-~~~gl~y 65 (192)
+...+.|.|.+.+|-+ ++..+. + |- -.+..++++..+.. -+.....++|..|+. ...|+=|
T Consensus 4 ~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~Kf 83 (140)
T d2j3wa1 4 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 83 (140)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCcEE
Confidence 3556788888877665 433211 1 11 13444554443321 245556688888855 5589999
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHhh
Q 029478 66 LVVADESVGRSVPFVFLERVKDDFKQR 92 (192)
Q Consensus 66 lcitd~~yp~rvaF~fL~ei~~~F~~~ 92 (192)
+.++|..-+.. .-.|+.++.+-|.+.
T Consensus 84 vl~td~~~~~~-i~~~~~~v~~lYv~~ 109 (140)
T d2j3wa1 84 IMLHDVRQEDG-IKNFFTDVYDLYIKF 109 (140)
T ss_dssp EEEESSCCHHH-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCcchH-HHHHHHHHHHHHHHH
Confidence 99999765532 246777777777653
No 7
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=61.03 E-value=4.5 Score=25.80 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 029478 133 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKN 178 (192)
Q Consensus 133 Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~ 178 (192)
.-+.++.||.||.-.++..++++=+|....-=..||-++++.|++.
T Consensus 21 Y~~~vk~y~~~~~~le~~~~lK~cvDtLt~edK~~i~~liekI~~S 66 (70)
T d1utga_ 21 YETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIVKS 66 (70)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 4456788888888778889999999988888888888888888754
No 8
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=57.64 E-value=4.9 Score=26.11 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 029478 133 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKN 178 (192)
Q Consensus 133 Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~ 178 (192)
.-+.++.||.||.-.++..++|+=+|....-=..||-++++.|++.
T Consensus 23 Y~~~vk~y~~d~~~lea~~~LK~cVDtLteedK~~i~~liekI~~S 68 (77)
T d1ccda_ 23 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTS 68 (77)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHhcCCHhhHHHHHHHHHHHHcC
Confidence 4456788888888778999999999988888888888888887753
No 9
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=37.93 E-value=16 Score=22.56 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCcceEEEEEe
Q 029478 168 IEKVRVFFLKNGIGIIYMYIW 188 (192)
Q Consensus 168 IdkiL~~~~~~~~~~~~~~~~ 188 (192)
+.++++.|.+.||-|-|||..
T Consensus 13 L~~v~~~L~~~~InI~~~y~~ 33 (71)
T d2f06a1 13 LAKVLGFLSAEGVFIEYMYSF 33 (71)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEE
Confidence 457888999999999999975
No 10
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=36.15 E-value=15 Score=23.44 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHcCc
Q 029478 131 PRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRV-FFLKNGI 180 (192)
Q Consensus 131 ~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~-~~~~~~~ 180 (192)
+.|+-+.+.||..|...+.|+..-++ =.++|+++++ |+++.|.
T Consensus 9 ~yL~~l~~~f~ggPvGl~tlAa~l~e-------~~~TiEdviEPyLiq~G~ 52 (75)
T d1in4a1 9 KILKTIIEIYRGGPVGLNALAASLGV-------EADTLSEVYEPYLLQAGF 52 (75)
T ss_dssp HHHHHHHHHSTTCCBCHHHHHHHHTS-------CHHHHHHHTHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHcC-------ChhHHHHHhhHHHHHhhH
Confidence 56777778888889876666543222 2467888999 8888773
No 11
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.71 E-value=14 Score=26.77 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHcCcce
Q 029478 126 DREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIM------MDNIEKVRVFFLKNGIGI 182 (192)
Q Consensus 126 ~~~F~~~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM------~~NIdkiL~~~~~~~~~~ 182 (192)
...|...|+.+++..+ +.+..+-.=+.|.|.-+ .++|+.-|++|+..-|||
T Consensus 93 ~~~F~~~L~~i~~rH~------~vv~tlA~G~~E~k~~~~~~~~~~~~iq~FLDrf~~sRIgi 149 (164)
T d1y8oa1 93 LDNFLQVLIKVRNRHN------DVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISF 149 (164)
T ss_dssp HHHHHHHHHHHHHHGG------GHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHH
Confidence 4568889999886542 34455555566666544 357999999999998886
No 12
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=30.28 E-value=11 Score=28.77 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCcceE
Q 029478 148 SKLSKLKAQITEVKGIMMDNIEKVRVFFLKNGIGII 183 (192)
Q Consensus 148 Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~~~~~~ 183 (192)
..+.++.++|++.++ ....++++++|+.+..-||+
T Consensus 227 ~~l~~~~~~l~~~~~-~~~~v~~~i~Fi~~s~rGi~ 261 (262)
T d2jf2a1 227 KTLDEVKPEIAELAE-TYPEVKAFTDFFARSTRGLI 261 (262)
T ss_dssp CCHHHHHHHHHHHHT-TCGGGHHHHHHHHHCCSCBC
T ss_pred CCHHHHHHHHHhhcc-CCHHHHHHHHHHHhCCCCcc
Confidence 466777777777766 44689999999999888874
No 13
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.33 E-value=35 Score=21.24 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=12.1
Q ss_pred HHHHHHHHHHc-CcceEEE
Q 029478 168 IEKVRVFFLKN-GIGIIYM 185 (192)
Q Consensus 168 IdkiL~~~~~~-~~~~~~~ 185 (192)
+.+.++.+++. ++|||++
T Consensus 30 ~~~~i~~~~~~~digII~I 48 (76)
T d2i4ra1 30 IVKAVEDVLKRDDVGVVIM 48 (76)
T ss_dssp HHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEE
Confidence 44455566665 7999986
No 14
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}
Probab=20.23 E-value=22 Score=27.62 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCcc
Q 029478 132 RLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVRVFFLKNGIG 181 (192)
Q Consensus 132 ~Lk~lm~~yn~~p~~~Dkl~klq~ei~eVk~IM~~NIdkiL~~~~~~~~~ 181 (192)
.++++|+.. |...++-..+.+++|+ +.+.+..+-++++++++ +|.+
T Consensus 146 e~~~Li~k~-q~~~s~k~Ft~~~~q~--l~e~L~~y~erli~W~v-t~~~ 191 (262)
T d1sa3a_ 146 ELKELIRKH-QNDQSAKLFTPVQKQR--LTELLEPYRERFIRWCV-TLRA 191 (262)
T ss_dssp HHHHHHHHH-HHHTSSTTSCHHHHHH--HHHHHGGGHHHHHHHHH-HSCS
T ss_pred HHHHHHHHH-hccchhcccChhHHHH--HHHHHHHHHHHHHHHHH-hcCC
Confidence 377777554 3333445566777777 77788888999999998 6654
No 15
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.19 E-value=82 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHH
Q 029478 148 SKLSKLKAQITEVKGIMMDNIEKVR 172 (192)
Q Consensus 148 Dkl~klq~ei~eVk~IM~~NIdkiL 172 (192)
--+..+++.-..+.+++.+|++||-
T Consensus 172 ~~v~eiRn~Y~~l~D~i~KN~eKik 196 (200)
T g1avo.1 172 LMVMEIRNAYAVLYDIILKNFEKLK 196 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 4567777788888999999999974
Done!