Query 029479
Match_columns 192
No_of_seqs 186 out of 1785
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 13:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 3.7E-35 8.1E-40 224.3 21.0 187 1-188 10-197 (197)
2 PRK03767 NAD(P)H:quinone oxido 100.0 1.1E-34 2.3E-39 222.4 21.9 188 1-189 11-199 (200)
3 KOG3135 1,4-benzoquinone reduc 100.0 6.5E-34 1.4E-38 204.1 18.1 189 1-190 11-202 (203)
4 COG0655 WrbA Multimeric flavod 100.0 2.7E-27 5.9E-32 182.3 17.7 185 2-189 13-206 (207)
5 PRK05569 flavodoxin; Provision 99.9 1.6E-23 3.4E-28 152.0 15.9 128 1-182 11-140 (141)
6 PRK05568 flavodoxin; Provision 99.9 1.3E-23 2.9E-28 152.6 15.1 129 1-183 11-141 (142)
7 PRK11921 metallo-beta-lactamas 99.9 8E-24 1.7E-28 177.5 14.2 135 1-185 257-393 (394)
8 PRK06756 flavodoxin; Provision 99.9 5E-23 1.1E-27 150.7 15.1 136 1-185 11-147 (148)
9 PRK05452 anaerobic nitric oxid 99.9 2.7E-23 5.9E-28 177.6 14.8 136 1-186 261-397 (479)
10 TIGR01753 flav_short flavodoxi 99.9 2.8E-22 6.2E-27 144.9 15.0 131 1-182 8-140 (140)
11 PRK06703 flavodoxin; Provision 99.9 1E-21 2.2E-26 144.2 14.6 138 1-188 11-150 (151)
12 COG0426 FpaA Uncharacterized f 99.9 1.3E-21 2.9E-26 160.1 12.9 133 1-183 256-388 (388)
13 PRK06242 flavodoxin; Provision 99.9 2.1E-21 4.6E-26 142.2 12.3 137 2-184 12-149 (150)
14 PRK07308 flavodoxin; Validated 99.9 6.8E-21 1.5E-25 139.1 14.3 134 1-184 11-145 (146)
15 PF03358 FMN_red: NADPH-depend 99.9 8.3E-22 1.8E-26 144.6 9.1 130 2-135 13-144 (152)
16 PRK10569 NAD(P)H-dependent FMN 99.8 8.3E-20 1.8E-24 138.7 13.6 161 2-187 13-174 (191)
17 TIGR03566 FMN_reduc_MsuE FMN r 99.8 1.9E-19 4E-24 135.2 12.2 160 2-186 12-172 (174)
18 TIGR03567 FMN_reduc_SsuE FMN r 99.8 1.8E-18 4E-23 129.4 12.1 158 2-183 12-170 (171)
19 PRK09267 flavodoxin FldA; Vali 99.8 1.9E-17 4.2E-22 123.6 16.1 153 1-184 11-166 (169)
20 PRK12359 flavodoxin FldB; Prov 99.7 2.5E-16 5.4E-21 117.4 16.2 154 1-185 10-168 (172)
21 PRK00170 azoreductase; Reviewe 99.7 5.7E-17 1.2E-21 124.2 11.4 129 3-133 16-171 (201)
22 TIGR01752 flav_long flavodoxin 99.7 3.1E-16 6.7E-21 116.9 14.7 149 1-182 9-163 (167)
23 PRK09271 flavodoxin; Provision 99.7 1E-16 2.3E-21 118.7 12.1 134 1-185 10-147 (160)
24 TIGR02690 resist_ArsH arsenica 99.7 4.3E-16 9.3E-21 120.1 14.3 162 3-189 40-204 (219)
25 PRK01355 azoreductase; Reviewe 99.7 3.4E-16 7.3E-21 119.9 13.0 132 2-133 16-165 (199)
26 PRK09739 hypothetical protein; 99.7 1.9E-16 4.2E-21 121.2 8.4 107 2-109 16-133 (199)
27 PRK13556 azoreductase; Provisi 99.7 1.9E-15 4E-20 116.6 12.8 132 2-133 16-177 (208)
28 TIGR01754 flav_RNR ribonucleot 99.6 8.1E-15 1.8E-19 106.2 11.3 98 1-124 10-111 (140)
29 PRK06934 flavodoxin; Provision 99.6 5.5E-15 1.2E-19 113.9 9.6 112 1-122 69-183 (221)
30 PF00258 Flavodoxin_1: Flavodo 99.6 2.9E-14 6.3E-19 103.4 11.0 117 1-136 6-127 (143)
31 PF02525 Flavodoxin_2: Flavodo 99.5 1.7E-13 3.7E-18 104.8 11.2 129 2-133 14-173 (199)
32 PRK11104 hemG protoporphyrinog 99.5 5.7E-14 1.2E-18 105.6 8.2 79 1-106 10-88 (177)
33 PRK09004 FMN-binding protein M 99.5 4.1E-13 8.9E-18 97.9 12.4 110 1-135 11-121 (146)
34 PRK13555 azoreductase; Provisi 99.5 4.1E-12 9E-17 97.8 16.5 129 3-131 17-175 (208)
35 PF12682 Flavodoxin_4: Flavodo 99.5 2.2E-13 4.8E-18 100.3 8.7 109 1-122 9-127 (156)
36 PF12724 Flavodoxin_5: Flavodo 99.5 1.9E-13 4.1E-18 99.4 7.4 83 1-110 7-89 (143)
37 COG0431 Predicted flavoprotein 99.4 6.6E-13 1.4E-17 100.5 8.4 120 3-134 14-137 (184)
38 COG0716 FldA Flavodoxins [Ener 99.4 5.5E-12 1.2E-16 92.5 13.1 138 1-184 11-150 (151)
39 PRK07116 flavodoxin; Provision 99.4 1.5E-12 3.3E-17 96.4 9.7 110 1-122 12-130 (160)
40 PF12641 Flavodoxin_3: Flavodo 99.4 2.5E-11 5.5E-16 89.5 13.3 73 1-108 7-79 (160)
41 PRK08105 flavodoxin; Provision 99.4 1.9E-11 4.1E-16 89.5 11.9 112 1-135 11-123 (149)
42 COG1182 AcpD Acyl carrier prot 99.3 1.7E-10 3.7E-15 86.9 13.0 130 3-132 16-173 (202)
43 PRK04930 glutathione-regulated 99.3 1.1E-10 2.4E-15 88.0 12.1 103 21-133 33-150 (184)
44 KOG4530 Predicted flavoprotein 99.3 1.1E-10 2.5E-15 84.0 11.4 116 8-131 29-150 (199)
45 PRK00871 glutathione-regulated 99.2 2.1E-10 4.6E-15 85.9 10.4 112 10-133 18-142 (176)
46 COG2249 MdaB Putative NADPH-qu 99.2 1.2E-10 2.6E-15 88.1 8.6 99 5-108 15-125 (189)
47 COG4635 HemG Flavodoxin [Energ 99.2 4.6E-11 9.9E-16 86.2 5.6 102 1-128 10-113 (175)
48 PRK05723 flavodoxin; Provision 99.2 1.4E-09 3.1E-14 79.6 13.1 110 1-134 10-123 (151)
49 PRK10953 cysJ sulfite reductas 99.0 1.2E-08 2.6E-13 89.9 13.0 111 1-133 71-182 (600)
50 TIGR01931 cysJ sulfite reducta 98.9 2.5E-08 5.4E-13 88.0 12.7 111 1-133 68-179 (597)
51 TIGR00333 nrdI ribonucleoside- 98.5 2.6E-06 5.7E-11 60.2 10.4 69 1-108 6-75 (125)
52 PRK03600 nrdI ribonucleotide r 98.3 6.6E-06 1.4E-10 59.0 8.1 87 57-181 36-128 (134)
53 PRK02551 flavoprotein NrdI; Pr 96.3 0.045 9.8E-07 40.1 8.4 81 1-105 11-103 (154)
54 KOG1159 NADP-dependent flavopr 96.2 0.034 7.3E-07 47.7 8.4 111 1-132 10-122 (574)
55 COG1780 NrdI Protein involved 92.0 1.3 2.7E-05 31.8 7.2 94 57-188 37-136 (141)
56 PF07972 Flavodoxin_NdrI: NrdI 91.1 0.67 1.4E-05 32.6 5.2 57 1-84 6-67 (122)
57 COG0369 CysJ Sulfite reductase 89.9 0.78 1.7E-05 40.9 5.7 110 1-132 57-167 (587)
58 cd05565 PTS_IIB_lactose PTS_II 88.2 1.5 3.2E-05 29.7 4.9 69 4-104 12-80 (99)
59 PRK10499 PTS system N,N'-diace 87.5 7 0.00015 26.6 8.0 87 4-126 15-103 (106)
60 COG1440 CelA Phosphotransferas 86.5 5 0.00011 27.2 6.6 75 4-110 13-89 (102)
61 COG1445 FrwB Phosphotransferas 86.3 2.8 6.1E-05 29.3 5.4 50 4-69 16-66 (122)
62 PRK11538 ribosome-associated p 80.7 4.9 0.00011 27.5 4.8 54 4-85 2-55 (105)
63 KOG1160 Fe-S oxidoreductase [E 79.6 12 0.00025 32.4 7.5 84 2-109 57-145 (601)
64 PRK13143 hisH imidazole glycer 77.5 5.6 0.00012 30.2 4.9 33 11-68 15-47 (200)
65 PF09822 ABC_transp_aux: ABC-t 77.4 11 0.00024 29.9 6.8 69 55-132 192-266 (271)
66 cd03142 GATase1_ThuA Type 1 gl 75.8 32 0.00069 26.7 8.6 61 8-86 24-86 (215)
67 TIGR01692 HIBADH 3-hydroxyisob 74.6 42 0.00092 26.9 9.6 109 7-136 6-117 (288)
68 PRK06895 putative anthranilate 73.5 16 0.00035 27.4 6.5 37 12-69 17-54 (190)
69 PRK09212 pyruvate dehydrogenas 73.3 15 0.00032 30.4 6.6 70 2-85 209-279 (327)
70 TIGR00829 FRU PTS system, fruc 73.1 17 0.00036 23.7 5.6 50 4-69 12-62 (85)
71 PF03575 Peptidase_S51: Peptid 72.2 6.2 0.00013 28.6 3.8 53 10-84 3-55 (154)
72 PF02410 Oligomerisation: Olig 71.1 7.2 0.00016 26.2 3.6 50 8-85 1-50 (100)
73 PF06283 ThuA: Trehalose utili 69.7 30 0.00064 26.5 7.3 71 6-103 18-88 (217)
74 PF02302 PTS_IIB: PTS system, 64.9 23 0.0005 22.7 5.1 46 5-70 12-58 (90)
75 cd05569 PTS_IIB_fructose PTS_I 64.4 31 0.00067 22.9 5.6 50 4-69 13-63 (96)
76 PRK00961 H(2)-dependent methyl 64.3 78 0.0017 25.8 8.9 99 53-183 135-236 (342)
77 PF01210 NAD_Gly3P_dh_N: NAD-d 63.2 10 0.00023 27.5 3.4 86 9-107 11-106 (157)
78 TIGR00853 pts-lac PTS system, 62.8 9.9 0.00021 25.3 3.0 68 5-104 16-83 (95)
79 PF02153 PDH: Prephenate dehyd 62.8 75 0.0016 25.1 9.7 27 54-86 40-66 (258)
80 PRK10310 PTS system galactitol 62.8 16 0.00035 24.2 4.0 23 5-28 15-38 (94)
81 CHL00144 odpB pyruvate dehydro 61.6 33 0.00071 28.4 6.4 69 2-84 209-278 (327)
82 cd05564 PTS_IIB_chitobiose_lic 61.2 13 0.00028 24.7 3.3 69 4-104 11-79 (96)
83 PRK06545 prephenate dehydrogen 60.9 64 0.0014 26.9 8.1 72 7-86 10-81 (359)
84 PRK10427 putative PTS system f 60.2 37 0.00081 23.5 5.6 50 4-69 17-67 (114)
85 TIGR01501 MthylAspMutase methy 59.4 62 0.0013 23.1 9.0 94 10-129 19-112 (134)
86 TIGR00090 iojap_ybeB iojap-lik 59.2 15 0.00032 24.7 3.3 50 9-86 2-51 (99)
87 COG1587 HemD Uroporphyrinogen- 58.4 39 0.00085 26.5 6.2 77 7-104 11-87 (248)
88 PF04723 GRDA: Glycine reducta 58.0 41 0.0009 24.2 5.4 63 93-181 2-64 (150)
89 PLN02683 pyruvate dehydrogenas 57.9 81 0.0018 26.4 8.2 69 2-84 236-305 (356)
90 PRK12490 6-phosphogluconate de 57.2 1E+02 0.0022 24.9 9.4 107 7-136 10-121 (299)
91 TIGR00872 gnd_rel 6-phosphoglu 56.1 1.1E+02 0.0023 24.7 8.6 110 7-136 10-120 (298)
92 PF03446 NAD_binding_2: NAD bi 55.8 34 0.00074 24.9 5.1 108 7-136 11-121 (163)
93 cd01748 GATase1_IGP_Synthase T 54.9 29 0.00064 26.1 4.8 37 3-68 9-45 (198)
94 COG0287 TyrA Prephenate dehydr 54.7 34 0.00074 27.6 5.3 72 7-86 13-85 (279)
95 PRK07053 glutamine amidotransf 54.1 32 0.0007 26.9 5.0 41 11-70 18-59 (234)
96 cd06578 HemD Uroporphyrinogen- 53.9 68 0.0015 24.2 6.8 58 9-86 10-69 (239)
97 TIGR01505 tartro_sem_red 2-hyd 53.7 1.1E+02 0.0025 24.3 9.6 111 7-135 9-119 (291)
98 PRK14619 NAD(P)H-dependent gly 53.0 1.2E+02 0.0026 24.5 11.1 55 7-86 14-68 (308)
99 cd05212 NAD_bind_m-THF_DH_Cycl 52.9 46 0.001 23.9 5.2 17 54-70 66-82 (140)
100 PF00919 UPF0004: Uncharacteri 52.7 67 0.0015 21.4 6.2 50 55-108 32-81 (98)
101 KOG3179 Predicted glutamine sy 51.6 1.1E+02 0.0023 23.9 7.1 43 10-70 28-70 (245)
102 COG0022 AcoB Pyruvate/2-oxoglu 51.3 69 0.0015 26.4 6.4 65 2-80 208-273 (324)
103 PRK11559 garR tartronate semia 50.9 1.3E+02 0.0027 24.1 9.1 110 8-136 13-123 (296)
104 COG1587 HemD Uroporphyrinogen- 50.3 64 0.0014 25.3 6.2 74 10-103 136-211 (248)
105 PRK08818 prephenate dehydrogen 50.3 37 0.00081 28.6 5.0 58 7-86 15-72 (370)
106 PRK10834 vancomycin high tempe 49.6 63 0.0014 25.5 5.9 62 62-128 48-111 (239)
107 PRK11892 pyruvate dehydrogenas 49.3 72 0.0016 27.8 6.7 69 2-84 348-417 (464)
108 PF02780 Transketolase_C: Tran 48.7 25 0.00054 24.2 3.3 30 2-32 17-46 (124)
109 PRK08250 glutamine amidotransf 48.0 95 0.0021 24.2 6.8 39 13-70 18-57 (235)
110 cd01743 GATase1_Anthranilate_S 47.5 1.1E+02 0.0024 22.5 7.4 41 10-69 12-53 (184)
111 PRK09065 glutamine amidotransf 47.5 80 0.0017 24.7 6.3 56 10-85 25-84 (237)
112 PF05368 NmrA: NmrA-like famil 47.1 70 0.0015 24.4 5.9 33 54-86 59-91 (233)
113 PTZ00182 3-methyl-2-oxobutanat 46.5 80 0.0017 26.4 6.4 69 2-84 241-310 (355)
114 COG0799 Uncharacterized homolo 46.3 79 0.0017 22.0 5.3 55 4-86 2-56 (115)
115 PRK08811 uroporphyrinogen-III 46.1 86 0.0019 25.0 6.4 51 7-69 28-79 (266)
116 PRK14476 nitrogenase molybdenu 46.1 1.9E+02 0.0041 25.1 8.8 115 2-131 74-199 (455)
117 PF13344 Hydrolase_6: Haloacid 45.7 14 0.00031 24.7 1.6 56 59-131 4-59 (101)
118 PRK13527 glutamine amidotransf 45.3 49 0.0011 25.0 4.7 38 7-67 14-51 (200)
119 KOG2728 Uncharacterized conser 45.0 33 0.00071 27.4 3.6 34 68-107 8-41 (302)
120 PRK07417 arogenate dehydrogena 44.5 1.6E+02 0.0035 23.4 7.9 69 7-86 10-78 (279)
121 PRK13265 glycine/sarcosine/bet 44.4 82 0.0018 22.7 5.2 36 93-134 3-38 (154)
122 PF12076 Wax2_C: WAX2 C-termin 44.4 24 0.00053 26.0 2.7 28 2-30 4-31 (164)
123 COG0118 HisH Glutamine amidotr 44.2 43 0.00093 25.8 4.0 25 54-81 34-58 (204)
124 PF10087 DUF2325: Uncharacteri 44.1 91 0.002 20.5 6.3 72 8-103 11-82 (97)
125 PRK10474 putative PTS system f 44.0 78 0.0017 20.6 4.9 46 8-69 2-48 (88)
126 PRK09189 uroporphyrinogen-III 43.4 98 0.0021 23.9 6.2 21 59-86 170-190 (240)
127 PRK02261 methylaspartate mutas 42.4 1.2E+02 0.0027 21.5 10.1 93 11-131 22-116 (137)
128 PRK13170 hisH imidazole glycer 42.3 50 0.0011 24.9 4.3 34 3-65 11-44 (196)
129 PRK05752 uroporphyrinogen-III 42.3 1.1E+02 0.0024 24.0 6.4 60 8-86 14-75 (255)
130 PRK05479 ketol-acid reductoiso 41.9 2E+02 0.0044 23.9 8.1 56 7-69 27-83 (330)
131 cd01989 STK_N The N-terminal d 41.8 82 0.0018 21.8 5.2 16 55-70 99-114 (146)
132 cd03140 GATase1_PfpI_3 Type 1 41.5 45 0.00097 24.3 3.8 41 58-105 59-100 (170)
133 COG0386 BtuE Glutathione perox 41.4 72 0.0016 23.5 4.7 43 93-135 22-65 (162)
134 PRK05928 hemD uroporphyrinogen 40.4 97 0.0021 23.6 5.8 61 8-86 12-72 (249)
135 PRK09599 6-phosphogluconate de 40.2 2E+02 0.0043 23.2 10.2 108 7-136 10-121 (301)
136 PRK14818 NADH dehydrogenase su 40.1 77 0.0017 23.7 4.8 48 54-110 65-112 (173)
137 cd01080 NAD_bind_m-THF_DH_Cycl 39.9 65 0.0014 23.8 4.4 23 54-77 82-104 (168)
138 cd01968 Nitrogenase_NifE_I Nit 39.2 2.4E+02 0.0052 23.9 8.8 115 2-132 68-189 (410)
139 cd01965 Nitrogenase_MoFe_beta_ 38.8 2.4E+02 0.0053 24.0 8.4 116 2-132 63-187 (428)
140 CHL00188 hisH imidazole glycer 38.2 80 0.0017 24.3 4.9 16 55-70 35-50 (210)
141 TIGR01855 IMP_synth_hisH imida 38.0 61 0.0013 24.4 4.2 38 2-68 8-45 (196)
142 TIGR01723 hmd_TIGR 5,10-methen 37.9 2.3E+02 0.005 23.3 9.1 32 53-86 133-165 (340)
143 PRK11404 putative PTS system 37.8 87 0.0019 27.5 5.5 47 4-66 18-65 (482)
144 TIGR00888 guaA_Nterm GMP synth 37.8 1.5E+02 0.0033 21.9 6.3 24 3-31 9-32 (188)
145 PRK11199 tyrA bifunctional cho 37.7 66 0.0014 27.1 4.7 54 7-85 109-162 (374)
146 PRK09590 celB cellobiose phosp 37.2 73 0.0016 21.6 4.0 69 4-104 13-83 (104)
147 cd00316 Oxidoreductase_nitroge 37.1 2.2E+02 0.0048 23.7 7.8 117 2-132 62-184 (399)
148 smart00175 RAB Rab subfamily o 36.9 1.4E+02 0.0031 20.7 6.4 75 54-132 67-141 (164)
149 cd03130 GATase1_CobB Type 1 gl 36.8 79 0.0017 23.9 4.6 32 13-67 17-48 (198)
150 COG0078 ArgF Ornithine carbamo 36.8 2.4E+02 0.0052 23.2 8.2 88 54-180 113-204 (310)
151 PF07881 Fucose_iso_N1: L-fuco 36.7 41 0.0009 25.0 2.9 100 4-131 26-133 (171)
152 PRK06490 glutamine amidotransf 36.7 1.4E+02 0.003 23.4 6.1 39 12-69 24-63 (239)
153 cd01750 GATase1_CobQ Type 1 gl 36.4 1.2E+02 0.0026 22.7 5.6 34 11-69 14-47 (194)
154 cd02072 Glm_B12_BD B12 binding 35.6 1.6E+02 0.0035 20.8 9.6 59 10-86 17-75 (128)
155 PF13460 NAD_binding_10: NADH( 35.5 78 0.0017 22.9 4.4 95 3-107 5-101 (183)
156 cd01866 Rab2 Rab2 subfamily. 34.5 1.7E+02 0.0037 20.8 6.7 74 54-131 71-144 (168)
157 PRK13181 hisH imidazole glycer 34.4 76 0.0016 23.9 4.2 38 2-68 9-46 (199)
158 TIGR01019 sucCoAalpha succinyl 34.3 2.5E+02 0.0055 22.7 9.3 106 2-134 12-121 (286)
159 PF11382 DUF3186: Protein of u 33.9 65 0.0014 26.4 4.0 51 79-133 66-116 (308)
160 TIGR03521 GldG gliding-associa 33.9 69 0.0015 28.5 4.4 30 54-83 229-260 (552)
161 PRK14820 NADH dehydrogenase su 33.5 61 0.0013 24.4 3.4 47 55-110 69-115 (180)
162 cd01974 Nitrogenase_MoFe_beta 33.3 2.5E+02 0.0055 24.0 7.7 115 2-131 67-191 (435)
163 CHL00023 ndhK NADH dehydrogena 33.1 1.1E+02 0.0024 23.9 4.8 46 55-109 67-112 (225)
164 cd04121 Rab40 Rab40 subfamily. 33.0 2.1E+02 0.0045 21.3 6.6 72 55-131 74-145 (189)
165 PRK10712 PTS system fructose-s 33.0 1.1E+02 0.0024 27.4 5.5 50 4-69 118-168 (563)
166 cd06259 YdcF-like YdcF-like. Y 33.0 1.7E+02 0.0038 20.5 6.2 63 62-128 3-65 (150)
167 COG3260 Ni,Fe-hydrogenase III 33.0 1.9E+02 0.0041 20.9 5.9 45 56-109 46-90 (148)
168 PRK09393 ftrA transcriptional 32.8 65 0.0014 26.2 3.8 45 54-105 70-115 (322)
169 PRK13142 hisH imidazole glycer 32.2 95 0.0021 23.6 4.3 37 3-68 10-46 (192)
170 PLN02234 1-deoxy-D-xylulose-5- 31.6 3.9E+02 0.0085 24.5 8.7 69 2-85 552-621 (641)
171 PRK06048 acetolactate synthase 31.3 1.1E+02 0.0023 27.3 5.1 26 1-27 1-28 (561)
172 TIGR01737 FGAM_synth_I phospho 31.3 1.7E+02 0.0036 22.6 5.7 32 13-68 18-49 (227)
173 PRK14813 NADH dehydrogenase su 31.1 1.1E+02 0.0023 23.3 4.4 48 55-111 63-110 (189)
174 PRK13141 hisH imidazole glycer 31.1 80 0.0017 23.8 3.9 14 55-68 33-46 (205)
175 cd03466 Nitrogenase_NifN_2 Nit 30.9 2.9E+02 0.0063 23.6 7.6 115 2-132 66-186 (429)
176 cd03141 GATase1_Hsp31_like Typ 30.8 75 0.0016 24.5 3.7 42 57-105 88-132 (221)
177 PRK14194 bifunctional 5,10-met 30.6 3E+02 0.0066 22.5 12.1 27 5-32 47-73 (301)
178 COG1832 Predicted CoA-binding 30.6 97 0.0021 22.3 3.9 36 94-133 14-49 (140)
179 cd07363 45_DOPA_Dioxygenase Th 29.9 1.6E+02 0.0035 23.2 5.6 24 3-28 78-101 (253)
180 PF00117 GATase: Glutamine ami 29.8 2.3E+02 0.0049 20.8 6.2 58 10-86 11-69 (192)
181 PRK15059 tartronate semialdehy 29.7 3E+02 0.0065 22.2 9.6 110 7-136 10-120 (292)
182 PRK14571 D-alanyl-alanine synt 29.6 1.7E+02 0.0037 23.4 5.8 60 7-85 19-78 (299)
183 PRK05282 (alpha)-aspartyl dipe 29.5 1.2E+02 0.0025 23.9 4.6 43 3-66 44-86 (233)
184 PF02593 dTMP_synthase: Thymid 29.4 2.7E+02 0.0059 21.6 8.2 87 21-134 21-110 (217)
185 COG0296 GlgB 1,4-alpha-glucan 29.3 1.3E+02 0.0029 27.3 5.4 61 4-85 162-223 (628)
186 PRK08655 prephenate dehydrogen 29.2 2.5E+02 0.0053 24.2 6.9 69 7-86 11-79 (437)
187 PF00289 CPSase_L_chain: Carba 29.1 1.9E+02 0.0041 19.7 7.3 94 8-134 13-106 (110)
188 PRK07119 2-ketoisovalerate fer 29.0 1.7E+02 0.0037 24.4 5.8 31 2-33 254-284 (352)
189 cd03138 GATase1_AraC_2 AraC tr 29.0 70 0.0015 23.7 3.2 45 54-105 64-113 (195)
190 PRK06975 bifunctional uroporph 28.9 1.6E+02 0.0035 26.9 5.9 58 9-86 15-75 (656)
191 cd03129 GAT1_Peptidase_E_like 28.9 1.8E+02 0.0038 22.0 5.5 23 54-80 75-97 (210)
192 PRK15461 NADH-dependent gamma- 28.4 3.1E+02 0.0068 22.0 9.2 110 8-136 12-122 (296)
193 PF01695 IstB_IS21: IstB-like 28.3 52 0.0011 24.5 2.3 60 2-68 58-117 (178)
194 PF06554 Olfactory_mark: Olfac 28.3 65 0.0014 23.0 2.6 17 171-187 108-124 (151)
195 PRK14817 NADH dehydrogenase su 28.3 67 0.0015 24.2 2.9 47 55-110 71-117 (181)
196 TIGR01383 not_thiJ DJ-1 family 28.3 63 0.0014 23.5 2.8 42 57-105 61-105 (179)
197 PRK14477 bifunctional nitrogen 28.2 4.5E+02 0.0097 25.2 8.9 115 2-132 94-215 (917)
198 PRK14478 nitrogenase molybdenu 28.1 4.1E+02 0.0088 23.2 9.5 115 2-132 101-222 (475)
199 cd01971 Nitrogenase_VnfN_like 28.0 3.8E+02 0.0083 22.9 9.2 117 2-132 68-191 (427)
200 PRK14815 NADH dehydrogenase su 27.7 1.2E+02 0.0026 22.9 4.1 47 55-110 69-115 (183)
201 PLN02225 1-deoxy-D-xylulose-5- 27.7 2.6E+02 0.0056 26.0 6.9 70 2-85 575-644 (701)
202 cd03147 GATase1_Ydr533c_like T 27.6 74 0.0016 24.8 3.2 43 56-105 91-136 (231)
203 PRK12439 NAD(P)H-dependent gly 27.6 2.6E+02 0.0057 23.0 6.6 26 55-86 73-98 (341)
204 cd04101 RabL4 RabL4 (Rab-like4 27.6 1.1E+02 0.0023 21.5 3.9 47 54-105 70-116 (164)
205 cd01740 GATase1_FGAR_AT Type 1 27.5 2.2E+02 0.0047 22.2 5.8 40 12-70 15-55 (238)
206 PF03698 UPF0180: Uncharacteri 27.5 74 0.0016 20.6 2.6 33 10-67 11-43 (80)
207 PRK09765 PTS system 2-O-a-mann 27.1 1.6E+02 0.0035 26.8 5.6 51 4-70 178-229 (631)
208 PF00763 THF_DHG_CYH: Tetrahyd 27.1 2.1E+02 0.0046 19.6 6.5 63 5-78 43-106 (117)
209 PF11965 DUF3479: Domain of un 27.0 2E+02 0.0042 21.4 5.1 51 20-83 29-80 (164)
210 TIGR02069 cyanophycinase cyano 26.9 2.1E+02 0.0045 22.6 5.6 14 54-67 77-90 (250)
211 PF09314 DUF1972: Domain of un 26.9 1E+02 0.0022 23.3 3.6 34 97-130 2-37 (185)
212 cd02068 radical_SAM_B12_BD B12 26.8 1.5E+02 0.0032 20.3 4.4 54 11-86 7-63 (127)
213 PRK15438 erythronate-4-phospha 26.4 2.9E+02 0.0063 23.4 6.7 70 53-132 73-144 (378)
214 PRK13152 hisH imidazole glycer 26.3 1.1E+02 0.0025 23.0 4.0 13 55-67 33-45 (201)
215 COG3414 SgaB Phosphotransferas 26.3 1.7E+02 0.0038 19.3 4.3 28 3-31 13-42 (93)
216 COG5012 Predicted cobalamin bi 26.2 3.2E+02 0.007 21.4 6.7 78 3-101 114-191 (227)
217 PRK03619 phosphoribosylformylg 26.0 2.3E+02 0.0051 21.7 5.7 12 56-67 38-49 (219)
218 PF03652 UPF0081: Uncharacteri 26.0 92 0.002 22.1 3.2 41 59-104 51-95 (135)
219 COG0061 nadF NAD kinase [Coenz 26.0 39 0.00084 27.2 1.4 14 56-69 162-175 (281)
220 PRK06411 NADH dehydrogenase su 25.9 1.9E+02 0.004 21.9 4.9 47 55-110 70-116 (183)
221 TIGR03376 glycerol3P_DH glycer 25.9 3.9E+02 0.0085 22.2 7.8 43 55-108 78-120 (342)
222 TIGR01957 nuoB_fam NADH-quinon 25.7 1.1E+02 0.0024 22.2 3.5 45 56-109 54-98 (145)
223 cd03136 GATase1_AraC_ArgR_like 25.6 1.1E+02 0.0023 22.5 3.6 44 55-105 60-104 (185)
224 PF06792 UPF0261: Uncharacteri 25.5 82 0.0018 27.0 3.2 31 1-32 192-222 (403)
225 TIGR01282 nifD nitrogenase mol 25.2 1.1E+02 0.0024 26.6 4.1 35 92-134 331-365 (466)
226 cd04124 RabL2 RabL2 subfamily. 24.9 1.3E+02 0.0027 21.3 3.9 47 54-105 67-113 (161)
227 smart00178 SAR Sar1p-like memb 24.9 2.8E+02 0.006 20.2 6.3 48 55-105 80-127 (184)
228 PRK05665 amidotransferase; Pro 24.8 3.4E+02 0.0074 21.2 6.8 31 55-85 53-87 (240)
229 PRK13146 hisH imidazole glycer 24.8 1.3E+02 0.0028 22.9 4.0 14 54-67 36-49 (209)
230 cd01977 Nitrogenase_VFe_alpha 24.7 4.4E+02 0.0094 22.4 9.2 117 2-132 69-193 (415)
231 cd05566 PTS_IIB_galactitol PTS 24.7 1.8E+02 0.0038 18.5 4.2 24 2-26 11-34 (89)
232 COG0603 Predicted PP-loop supe 24.6 2.7E+02 0.0058 21.8 5.7 17 166-182 39-55 (222)
233 TIGR00465 ilvC ketol-acid redu 24.4 4E+02 0.0086 21.9 8.0 57 7-70 13-70 (314)
234 PRK14816 NADH dehydrogenase su 24.4 1.8E+02 0.004 21.9 4.6 47 55-110 77-123 (182)
235 PF00255 GSHPx: Glutathione pe 24.2 1E+02 0.0022 21.0 3.0 44 92-135 17-61 (108)
236 cd04161 Arl2l1_Arl13_like Arl2 23.7 1.9E+02 0.0042 20.6 4.7 50 54-106 61-110 (167)
237 TIGR03316 ygeW probable carbam 23.6 4.5E+02 0.0097 22.1 7.5 38 94-131 168-205 (357)
238 cd03146 GAT1_Peptidase_E Type 23.5 2.3E+02 0.0051 21.5 5.3 14 54-67 75-88 (212)
239 PLN02832 glutamine amidotransf 23.4 1.7E+02 0.0037 23.2 4.5 14 54-67 33-46 (248)
240 COG3340 PepE Peptidase E [Amin 23.1 3.7E+02 0.008 21.0 7.6 63 63-134 4-69 (224)
241 PRK14188 bifunctional 5,10-met 22.9 4.2E+02 0.0092 21.6 12.1 27 5-32 46-72 (296)
242 TIGR00873 gnd 6-phosphoglucona 22.9 5.2E+02 0.011 22.6 11.0 145 7-184 9-159 (467)
243 PRK14077 pnk inorganic polypho 22.9 49 0.0011 26.9 1.4 12 58-69 175-186 (287)
244 PRK12491 pyrroline-5-carboxyla 22.9 3.9E+02 0.0085 21.2 6.8 68 7-85 12-83 (272)
245 cd03148 GATase1_EcHsp31_like T 22.8 1E+02 0.0022 24.1 3.2 30 57-86 94-126 (232)
246 cd00578 L-fuc_L-ara-isomerases 22.7 5E+02 0.011 22.3 13.0 99 5-129 21-128 (452)
247 PRK03094 hypothetical protein; 22.6 1.1E+02 0.0024 19.8 2.7 33 10-67 11-43 (80)
248 cd01867 Rab8_Rab10_Rab13_like 22.6 2.8E+02 0.0062 19.5 6.7 74 54-131 70-143 (167)
249 TIGR01089 fucI L-fucose isomer 22.6 5.8E+02 0.013 23.1 11.0 18 56-73 73-90 (587)
250 PF02602 HEM4: Uroporphyrinoge 22.5 97 0.0021 23.5 3.0 46 11-69 2-52 (231)
251 PLN02617 imidazole glycerol ph 22.4 1.8E+02 0.0039 26.0 4.9 13 55-67 40-52 (538)
252 COG0377 NuoB NADH:ubiquinone o 22.4 2E+02 0.0044 21.8 4.4 48 54-110 70-117 (194)
253 PRK11477 carbohydrate diacid t 22.4 2.3E+02 0.0049 23.7 5.4 52 57-108 28-98 (385)
254 PRK00865 glutamate racemase; P 22.3 2.8E+02 0.0061 21.9 5.6 37 95-135 4-40 (261)
255 TIGR01826 CofD_related conserv 22.1 2.1E+02 0.0045 23.6 4.9 70 54-129 167-239 (310)
256 TIGR00204 dxs 1-deoxy-D-xylulo 22.1 3.5E+02 0.0077 24.5 6.8 69 2-84 503-572 (617)
257 PRK01185 ppnK inorganic polyph 21.8 46 0.001 26.8 1.0 13 57-69 155-167 (271)
258 PF13380 CoA_binding_2: CoA bi 21.8 2.7E+02 0.0059 18.9 5.9 95 6-133 13-108 (116)
259 PLN02582 1-deoxy-D-xylulose-5- 21.8 3.5E+02 0.0076 25.0 6.7 69 2-84 551-619 (677)
260 PRK05670 anthranilate synthase 21.7 3.4E+02 0.0074 20.1 6.9 22 9-31 12-33 (189)
261 PRK08367 porA pyruvate ferredo 21.7 5.1E+02 0.011 22.1 9.2 62 2-79 269-332 (394)
262 PRK14814 NADH dehydrogenase su 21.7 2.2E+02 0.0047 21.7 4.5 46 55-109 69-114 (186)
263 PRK13306 ulaD 3-keto-L-gulonat 21.6 1E+02 0.0022 23.7 2.9 26 60-85 185-211 (216)
264 PRK02649 ppnK inorganic polyph 21.5 52 0.0011 27.0 1.3 12 58-69 179-190 (305)
265 PRK02399 hypothetical protein; 21.5 1.1E+02 0.0024 26.2 3.2 31 1-32 193-223 (406)
266 TIGR00683 nanA N-acetylneurami 21.3 2.1E+02 0.0045 23.1 4.8 30 56-85 93-122 (290)
267 PRK03372 ppnK inorganic polyph 21.2 55 0.0012 26.8 1.4 12 58-69 183-194 (306)
268 PRK00094 gpsA NAD(P)H-dependen 21.2 4.3E+02 0.0094 21.1 8.3 71 8-86 12-92 (325)
269 cd01741 GATase1_1 Subgroup of 21.1 3E+02 0.0066 20.1 5.4 15 55-69 42-56 (188)
270 PRK00257 erythronate-4-phospha 21.0 3.9E+02 0.0084 22.7 6.4 71 53-132 73-144 (381)
271 cd07187 YvcK_like family of mo 20.9 2.4E+02 0.0051 23.2 5.0 68 54-127 170-240 (308)
272 cd00877 Ran Ran (Ras-related n 20.8 1.7E+02 0.0036 20.9 3.8 46 54-104 67-112 (166)
273 PF06032 DUF917: Protein of un 20.7 1.5E+02 0.0033 24.8 3.9 98 3-133 22-122 (353)
274 PRK14179 bifunctional 5,10-met 20.7 4.7E+02 0.01 21.3 12.4 27 5-32 46-72 (284)
275 cd04158 ARD1 ARD1 subfamily. 20.7 2E+02 0.0043 20.5 4.2 49 54-105 61-109 (169)
276 cd00950 DHDPS Dihydrodipicolin 20.4 2.1E+02 0.0045 22.8 4.6 29 58-86 94-122 (284)
277 KOG4132 Uroporphyrinogen III s 20.4 3.5E+02 0.0076 21.4 5.5 28 55-85 179-209 (260)
278 PRK04147 N-acetylneuraminate l 20.3 2.1E+02 0.0046 23.0 4.6 29 58-86 98-126 (293)
279 cd01973 Nitrogenase_VFe_beta_l 20.3 5.5E+02 0.012 22.2 7.4 64 59-131 125-192 (454)
280 PRK03501 ppnK inorganic polyph 20.2 59 0.0013 26.0 1.4 12 58-69 147-158 (264)
281 COG0589 UspA Universal stress 20.1 2.9E+02 0.0063 18.7 5.0 49 5-68 72-122 (154)
282 PRK01911 ppnK inorganic polyph 20.1 51 0.0011 26.8 1.0 12 58-69 174-185 (292)
283 PRK04885 ppnK inorganic polyph 20.1 61 0.0013 26.0 1.4 12 58-69 146-157 (265)
No 1
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=3.7e-35 Score=224.26 Aligned_cols=187 Identities=51% Similarity=0.823 Sum_probs=157.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
+||||++||+.|++++++..|++|+++++.+..+.+++........++.|....+++.+||+||||||+|+++++++||+
T Consensus 10 ~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~g~~~~~lk~ 89 (197)
T TIGR01755 10 MYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRFGNMASQMRN 89 (197)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccccCccHHHHH
Confidence 68999999999999998733899999999887666555433222233445555689999999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
|+|++..+|....|.||++++|+++||.+|+.+.++..+...|..+||.+|+.++.++. .+..+..+++++||+++..+
T Consensus 90 fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~~~~-~~~~~~~~gg~~~G~~~~~~ 168 (197)
T TIGR01755 90 FLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYAAQE-QMGVDEVRGGSPYGATTIAG 168 (197)
T ss_pred HHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCccccc-ccccccccCCCCcceeeEcC
Confidence 99999888866689999999999999988888888999999999999999998876532 23344457899999999887
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 029479 161 -DGSRQPSELELAQAFHQGKYFAGITKKL 188 (192)
Q Consensus 161 -~~~~~p~~~~~e~~~~lg~~la~~~~~~ 188 (192)
+++..|++.+++.|+.+|+|+|+.+++|
T Consensus 169 ~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 169 GDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 6777899999999999999999999875
No 2
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-34 Score=222.39 Aligned_cols=188 Identities=52% Similarity=0.841 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
++|||++||++|++++++..|++|+++++.+..+.+++..+..+...+.+....+++.+||+||||||+|+++++++||+
T Consensus 11 ~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~g~~~~~lk~ 90 (200)
T PRK03767 11 MYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRFGNMAGQMRN 90 (200)
T ss_pred CCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccCCCchHHHHH
Confidence 58999999999999998623899999999876666655444333222223334799999999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
|+|++..+|....+.+|++++|+++||.+|+.+.++..+...+..+||.+|+.++.+. .++..+..++|++||+++..+
T Consensus 91 fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~~~-~~~~~~~~~~g~~~G~~~~~~ 169 (200)
T PRK03767 91 FLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAFQ-GQMDVDEVTGGSPYGATTIAG 169 (200)
T ss_pred HHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCccc-cccccccccCCcccceeeecC
Confidence 9999988876667999999999999999888888899999999999999999877653 122223356789999998886
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 029479 161 -DGSRQPSELELAQAFHQGKYFAGITKKLK 189 (192)
Q Consensus 161 -~~~~~p~~~~~e~~~~lg~~la~~~~~~~ 189 (192)
+++..|++++++.|+.+|+|+++.+++++
T Consensus 170 ~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~ 199 (200)
T PRK03767 170 GDGSRQPSENELAGARYQGRHVAEIAAKLA 199 (200)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778999999999999999999999986
No 3
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=6.5e-34 Score=204.13 Aligned_cols=189 Identities=75% Similarity=1.139 Sum_probs=178.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCC-CCCCCCChhHHhhcCEEEEecccCCCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPK-SDVPTITPNELAEADGILLGFPTRFGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k 79 (192)
++|+.+.||+++.++++.++| +.+++.+.+..+.+++.++.++++ .|.|.+..+.|.+||+.+||.|+.+|++|+|+|
T Consensus 11 ~yghv~~lAe~~kkGie~a~g-eA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~k 89 (203)
T KOG3135|consen 11 TYGHVAKLAEAEKKGIESAGG-EATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWK 89 (203)
T ss_pred cccHHHHHHHHHHhhhhccCC-eeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHH
Confidence 589999999999999999645 999999999999999999998887 488988899999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc-CCCCCccchhcccCCCCCccee
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT-FGAGMSEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
.|+|....+|..+.|.||++++|.|.|..+|+++.+..+....|.++||.+|+.+|+ ..+.++.+++|+++++||++++
T Consensus 90 aF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~ 169 (203)
T KOG3135|consen 90 AFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTF 169 (203)
T ss_pred HHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCcee
Confidence 999999999999999999999999999888889999999999999999999999998 7778999999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 029479 159 AG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 190 (192)
Q Consensus 159 ~~-~~~~~p~~~~~e~~~~lg~~la~~~~~~~~ 190 (192)
++ ||...|++.++++++-.|+.+++.+++|+.
T Consensus 170 Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 170 AGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred ecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 99 999999999999999999999999999975
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=182.32 Aligned_cols=185 Identities=39% Similarity=0.560 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCC--CCHHHhhhcCC---CCC-CCCCCCChhHHhhcCEEEEecccCCCCch
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPET--LSEDVLGKMGA---GPK-SDVPTITPNELAEADGILLGFPTRFGMMA 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~~~~~~~~---~~~-~d~~~~~~~~l~~aD~ivigsP~y~~~~~ 75 (192)
+|||.+|++++++++++. |+||+++++.+. .++..|..|.. |.. +|..+..+++|.+||+||||||||+++++
T Consensus 13 ~G~t~~l~~~~~~g~~~~-G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEA-GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHc-CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCch
Confidence 799999999999999994 999999999997 45666666654 443 34444558889999999999999999999
Q ss_pred HHHHHHHHH-hccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCcc--chhcccCCC
Q 029479 76 AQFKAFLDA-TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSE--MEKVKGGSP 152 (192)
Q Consensus 76 ~~~k~fld~-~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~--~~~~~~~~~ 152 (192)
++||.|||| .+.+|....|.+|+.+.|++.+..+|+++.++..+...+..++|.+++.++... +.+ .+....+.+
T Consensus 92 a~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~~--~~g~~~~~~~~g~~ 169 (207)
T COG0655 92 AQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGNA--VVGSGVDLIKGGDP 169 (207)
T ss_pred HHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEeccccccc--ccCcccccccCCCC
Confidence 999999999 777787678999999999999888887777889999999999999998766531 111 123567778
Q ss_pred CCcceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 029479 153 YGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 189 (192)
Q Consensus 153 ~g~~~~~~~~~~~p~~~~~e~~~~lg~~la~~~~~~~ 189 (192)
+|....+......+.+.+++.++.++++.++...++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 170 YGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred cccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 8877665522223666778888888888887766653
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.92 E-value=1.6e-23 Score=152.03 Aligned_cols=128 Identities=25% Similarity=0.278 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCch--HHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMA--AQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~--~~~ 78 (192)
++|||++||+.|++++++ .|++++++++.+. ...++.+||+||||||+|+++++ +++
T Consensus 11 ~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~--------------------~~~~~~~~d~iilgsPty~~~~~~~~~~ 69 (141)
T PRK05569 11 CGGNVEVLANTIADGAKE-AGAEVTIKHVADA--------------------KVEDVLEADAVAFGSPSMDNNNIEQEEM 69 (141)
T ss_pred CCCHHHHHHHHHHHHHHh-CCCeEEEEECCcC--------------------CHHHHhhCCEEEEECCCcCCCcCChHHH
Confidence 589999999999999988 5899999998763 24689999999999999998863 799
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCccee
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|+|++.. ..++||++++|+++||..+. .+..+...+...|+.+++. +.+
T Consensus 70 ~~~~~~l~~----~~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~g~~~~~~-~~~--------------------- 120 (141)
T PRK05569 70 APFLDQFKL----TPNENKKCILFGSYGWDNGE---FMKLWKDRMKDYGFNVIGD-LAV--------------------- 120 (141)
T ss_pred HHHHHHhhc----cCcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHCCCeEeee-EEE---------------------
Confidence 999999862 34789999999999987533 3556777788899999874 321
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 029479 159 AGDGSRQPSELELAQAFHQGKYFA 182 (192)
Q Consensus 159 ~~~~~~~p~~~~~e~~~~lg~~la 182 (192)
...|+++++++|+++|++|+
T Consensus 121 ----~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 121 ----NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ----ccCCCHHHHHHHHHHHHHHh
Confidence 24699999999999999986
No 6
>PRK05568 flavodoxin; Provisional
Probab=99.92 E-value=1.3e-23 Score=152.57 Aligned_cols=129 Identities=23% Similarity=0.307 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCch--HHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMA--AQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~--~~~ 78 (192)
++|||++||+.|++++++ .|++++++++.+. ...++.++|+||||||+|+++++ +.+
T Consensus 11 ~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~--------------------~~~~~~~~d~iilgsp~y~~~~~~~~~~ 69 (142)
T PRK05568 11 GTGNTEAMANLIAEGAKE-NGAEVKLLNVSEA--------------------SVDDVKGADVVALGSPAMGDEVLEEGEM 69 (142)
T ss_pred CCchHHHHHHHHHHHHHH-CCCeEEEEECCCC--------------------CHHHHHhCCEEEEECCccCcccccchhH
Confidence 689999999999999988 5999999999874 23689999999999999999874 689
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCccee
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|++++. ..+++|++++|+++||+.+. ....+...+...|+.+++.++..
T Consensus 70 ~~f~~~~~-----~~~~~k~~~~f~t~G~~~~~---~~~~~~~~l~~~g~~~~~~~~~~--------------------- 120 (142)
T PRK05568 70 EPFVESIS-----SLVKGKKLVLFGSYGWGDGE---WMRDWVERMEGYGANLVNEGLIV--------------------- 120 (142)
T ss_pred HHHHHHhh-----hhhCCCEEEEEEccCCCCCh---HHHHHHHHHHHCCCEEeCCcEEE---------------------
Confidence 99999985 35799999999999986432 35577777888999999875542
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH
Q 029479 159 AGDGSRQPSELELAQAFHQGKYFAG 183 (192)
Q Consensus 159 ~~~~~~~p~~~~~e~~~~lg~~la~ 183 (192)
...|+++++++|+++|++|++
T Consensus 121 ----~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 121 ----NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred ----ecCCCHHHHHHHHHHHHHHHh
Confidence 246899999999999999874
No 7
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.91 E-value=8e-24 Score=177.47 Aligned_cols=135 Identities=23% Similarity=0.284 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHHhh--hcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHH
Q 029479 1 MYGHVEKLAEEIQKGAA--SVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~ 78 (192)
|||||++||++|+++++ + .|++|+++++.+....++ ..++.+||+||||||||++++.+.+
T Consensus 257 ~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~~~~i----------------~~~~~~~d~ii~GspT~~~~~~~~~ 319 (394)
T PRK11921 257 MWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSDKNDI----------------ITEVFKSKAILVGSSTINRGILSST 319 (394)
T ss_pred CchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCCHHHH----------------HHHHHhCCEEEEECCCcCccccHHH
Confidence 79999999999999998 5 589999999987644333 2567899999999999999988999
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCccee
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|++.+. ...++||++++|+++||+++ ++..+.+.|...|+.+++.++.+
T Consensus 320 ~~~l~~l~----~~~~~~K~~a~FGsygw~g~----a~~~~~~~l~~~g~~~v~~~~~~--------------------- 370 (394)
T PRK11921 320 AAILEEIK----GLGFKNKKAAAFGSYGWSGE----SVKIITERLKKAGFEIVNDGIRE--------------------- 370 (394)
T ss_pred HHHHHHhh----ccCcCCCEEEEEecCCCccH----HHHHHHHHHHHCCCEEccCcEEE---------------------
Confidence 99999986 34689999999999999643 35688888999999999877653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029479 159 AGDGSRQPSELELAQAFHQGKYFAGIT 185 (192)
Q Consensus 159 ~~~~~~~p~~~~~e~~~~lg~~la~~~ 185 (192)
...|+++++++|+++|++|++.+
T Consensus 371 ----~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 371 ----LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred ----EeCCCHHHHHHHHHHHHHHHHhh
Confidence 24689999999999999998653
No 8
>PRK06756 flavodoxin; Provisional
Probab=99.91 E-value=5e-23 Score=150.67 Aligned_cols=136 Identities=25% Similarity=0.301 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCC-CCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~-~~~~~~~k 79 (192)
++|||++||+.|++++++ .|++++++++.+.. ...++.++|.||||||+|+ +.+|..++
T Consensus 11 ~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~~-------------------~~~~~~~~d~vi~gspt~~~g~~p~~~~ 70 (148)
T PRK06756 11 MSGNTEEMADHIAGVIRE-TENEIEVIDIMDSP-------------------EASILEQYDGIILGAYTWGDGDLPDDFL 70 (148)
T ss_pred CCchHHHHHHHHHHHHhh-cCCeEEEeehhccC-------------------CHHHHhcCCeEEEEeCCCCCCCCcHHHH
Confidence 689999999999999988 59999999987531 1367999999999999996 77788899
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceec
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+. ...++||++++|+++++.+++...++..+.+.|...|+.++..++.+
T Consensus 71 ~fl~~l~----~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~---------------------- 124 (148)
T PRK06756 71 DFYDAMD----SIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKV---------------------- 124 (148)
T ss_pred HHHHHHh----cCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEE----------------------
Confidence 9999985 24689999999999776544444567889999999999999876653
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029479 160 GDGSRQPSELELAQAFHQGKYFAGIT 185 (192)
Q Consensus 160 ~~~~~~p~~~~~e~~~~lg~~la~~~ 185 (192)
...|+++++++|+++|++|++.+
T Consensus 125 ---~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 125 ---ELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred ---ecCCCHHHHHHHHHHHHHHHHhc
Confidence 25799999999999999998753
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.90 E-value=2.7e-23 Score=177.63 Aligned_cols=136 Identities=22% Similarity=0.311 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHhhhc-CCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k 79 (192)
|||||++||++|++++++. .|++|+++++.+.+..++ ..++.+||+||||||||++++.++|+
T Consensus 261 ~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i----------------~~~~~~ad~vilGspT~~~~~~p~~~ 324 (479)
T PRK05452 261 MSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEI----------------LTNVFRSKGVLVGSSTMNNVMMPKIA 324 (479)
T ss_pred CccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHH----------------HhHHhhCCEEEEECCccCCcchHHHH
Confidence 7999999999999999873 267999999987644332 25677899999999999999999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceec
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+.. ..++||++++|+|+||.+++ +..+.+.|...|+.++. ++.+
T Consensus 325 ~fl~~l~~----~~l~gK~~~vFGSygw~g~a----~~~~~~~l~~~g~~~~~-~l~~---------------------- 373 (479)
T PRK05452 325 GLLEEITG----LRFRNKRASAFGSHGWSGGA----VDRLSTRLQDAGFEMSL-SLKA---------------------- 373 (479)
T ss_pred HHHHHhhc----cCcCCCEEEEEECCCcCcHH----HHHHHHHHHHCCCEEec-cEEE----------------------
Confidence 99999863 46899999999999996543 55888888999999974 4442
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029479 160 GDGSRQPSELELAQAFHQGKYFAGITK 186 (192)
Q Consensus 160 ~~~~~~p~~~~~e~~~~lg~~la~~~~ 186 (192)
+..|+++++++|+++|++|++.++
T Consensus 374 ---~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 374 ---KWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred ---EecCCHHHHHHHHHHHHHHHHHHh
Confidence 246999999999999999997765
No 10
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.90 E-value=2.8e-22 Score=144.91 Aligned_cols=131 Identities=24% Similarity=0.314 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCC-ch-HHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM-MA-AQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~-~~-~~~ 78 (192)
++|||+++|+.|++++.+ .|++++++++.+. ...++.++|.||||||||+++ +| +.+
T Consensus 8 ~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~--------------------~~~~l~~~d~iilgspty~~g~~p~~~~ 66 (140)
T TIGR01753 8 MTGNTEEMANIIAEGLKE-AGAEVDLLEVADA--------------------DAEDLLSYDAVLLGCSTWGDEDLEQDDF 66 (140)
T ss_pred CCcHHHHHHHHHHHHHHh-cCCeEEEEEcccC--------------------CHHHHhcCCEEEEEcCCCCCCCCCcchH
Confidence 689999999999999998 5999999998763 246788999999999999865 66 799
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCccee
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|++++. ...++||++++|+++||..+ ...+...+...|...|+.++..++..
T Consensus 67 ~~f~~~l~----~~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~--------------------- 120 (140)
T TIGR01753 67 EPFFEELE----DIDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKV--------------------- 120 (140)
T ss_pred HHHHHHhh----hCCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeee---------------------
Confidence 99999986 23589999999999988653 23466788888888999998875542
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 029479 159 AGDGSRQPSELELAQAFHQGKYFA 182 (192)
Q Consensus 159 ~~~~~~~p~~~~~e~~~~lg~~la 182 (192)
...|+++++++|+++|++|+
T Consensus 121 ----~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 121 ----DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred ----ecCCCHHHHHHHHHHHHHhC
Confidence 24689999999999999874
No 11
>PRK06703 flavodoxin; Provisional
Probab=99.88 E-value=1e-21 Score=144.23 Aligned_cols=138 Identities=22% Similarity=0.222 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCC-CCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~-~~~~~~~k 79 (192)
++|||+++|+.|++.+++ .|++++++++.+. ...++.++|.|||+||+|. +.+|+.++
T Consensus 11 ~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~--------------------~~~~l~~~d~viigspt~~~g~~p~~~~ 69 (151)
T PRK06703 11 MSGNTEDIADLIKVSLDA-FDHEVVLQEMDGM--------------------DAEELLAYDGIILGSYTWGDGDLPYEAE 69 (151)
T ss_pred CCchHHHHHHHHHHHHHh-cCCceEEEehhhC--------------------CHHHHhcCCcEEEEECCCCCCcCcHHHH
Confidence 689999999999999988 5999999998763 1357899999999999994 77888899
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceec
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+. ...+++|++++|++++|..+....+...+...|...|+.+++.++.+
T Consensus 70 ~f~~~l~----~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~---------------------- 123 (151)
T PRK06703 70 DFHEDLE----NIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKI---------------------- 123 (151)
T ss_pred HHHHHHh----cCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEE----------------------
Confidence 9999985 24688999999999988644323456678888999999999876653
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 029479 160 GDGSRQPS-ELELAQAFHQGKYFAGITKKL 188 (192)
Q Consensus 160 ~~~~~~p~-~~~~e~~~~lg~~la~~~~~~ 188 (192)
+..|+ ++++++|++++++|++.++++
T Consensus 124 ---~~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 124 ---ELAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred ---ecCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 23565 789999999999999887765
No 12
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.87 E-value=1.3e-21 Score=160.13 Aligned_cols=133 Identities=26% Similarity=0.373 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
|||||+.||++|++++.+ .|++|+++++.+.+++++. +++.+|++|||||||+++++++.+..
T Consensus 256 myg~T~~ma~aiaegl~~-~gv~v~~~~~~~~~~~eI~----------------~~i~~a~~~vvGsPT~~~~~~p~i~~ 318 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMK-EGVDVEVINLEDADPSEIV----------------EEILDAKGLVVGSPTINGGAHPPIQT 318 (388)
T ss_pred ccCCHHHHHHHHHHHhhh-cCCceEEEEcccCCHHHHH----------------HHHhhcceEEEecCcccCCCCchHHH
Confidence 899999999999999999 6999999999987666654 89999999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
++-.+.. ...++|++++|+|+||++++. ..+.+.|...|+.+....+.+
T Consensus 319 ~l~~v~~----~~~~~k~~~vfgS~GW~g~av----~~i~~~l~~~g~~~~~~~i~v----------------------- 367 (388)
T COG0426 319 ALGYVLA----LAPKNKLAGVFGSYGWSGEAV----DLIEEKLKDLGFEFGFDGIEV----------------------- 367 (388)
T ss_pred HHHHHHh----ccCcCceEEEEeccCCCCcch----HHHHHHHHhcCcEEeccceEE-----------------------
Confidence 9999863 467899999999999987654 478888999999987665542
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 029479 161 DGSRQPSELELAQAFHQGKYFAG 183 (192)
Q Consensus 161 ~~~~~p~~~~~e~~~~lg~~la~ 183 (192)
+..|+++++++|+++|+.|++
T Consensus 368 --k~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 368 --KFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred --EecCCHHHHHHHHHHHHHhcC
Confidence 357999999999999999874
No 13
>PRK06242 flavodoxin; Provisional
Probab=99.87 E-value=2.1e-21 Score=142.19 Aligned_cols=137 Identities=22% Similarity=0.227 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
+|||+++|+.|++++. ++++++.+. ...++.++|.||||||+|+++++++++.|
T Consensus 12 tGnT~~~A~~ia~~l~------~~~~~i~~~--------------------~~~~~~~~d~ii~g~pvy~~~~~~~~~~f 65 (150)
T PRK06242 12 HGNTEKIAKAIAEVLD------AEVIDPGDV--------------------NPEDLSEYDLIGFGSGIYFGKFHKSLLKL 65 (150)
T ss_pred CCCHHHHHHHHHHhcC------cEEecHHHC--------------------CcccHhHCCEEEEeCchhcCCcCHHHHHH
Confidence 6999999999999983 345666542 13679999999999999999999999999
Q ss_pred HHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC-
Q 029479 82 LDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG- 160 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 160 (192)
+|++. .+.||++++|+++||..++. +..+...+...|+.+++..... +...++.....+
T Consensus 66 l~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~~~~-----------g~~~~~~~~~~~~ 125 (150)
T PRK06242 66 IEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEFSCK-----------GFDTFGPFKLIGG 125 (150)
T ss_pred HHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEEecC-----------CcccccchhhcCC
Confidence 99984 35899999999999976442 5678888888999998752211 112222211101
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q 029479 161 DGSRQPSELELAQAFHQGKYFAGI 184 (192)
Q Consensus 161 ~~~~~p~~~~~e~~~~lg~~la~~ 184 (192)
.....|++++++.|+++|++|++.
T Consensus 126 ~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 126 INKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhc
Confidence 123579999999999999999753
No 14
>PRK07308 flavodoxin; Validated
Probab=99.87 E-value=6.8e-21 Score=139.06 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCC-CCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~-~~~~~~~k 79 (192)
++|||+++|+.|++++++ .|++++++++.+. ...++.++|.|||++|||. +.+|..++
T Consensus 11 ~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~--------------------~~~~l~~~d~vi~g~~t~g~G~~p~~~~ 69 (146)
T PRK07308 11 MTGNTEEIADIVADKLRE-LGHDVDVDECTTV--------------------DASDFEDADIAIVATYTYGDGELPDEIV 69 (146)
T ss_pred CCchHHHHHHHHHHHHHh-CCCceEEEecccC--------------------CHhHhccCCEEEEEeCccCCCCCCHHHH
Confidence 689999999999999988 5999999998763 2367889999999999997 77888999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceec
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+. ...++||++++|++++..++........+...|...|+.++..++.+
T Consensus 70 ~fl~~l~----~~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~---------------------- 123 (146)
T PRK07308 70 DFYEDLA----DLDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKV---------------------- 123 (146)
T ss_pred HHHHHHh----cCCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEE----------------------
Confidence 9999986 34689999999999544333333456678888889999998776543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Q 029479 160 GDGSRQPSELELAQAFHQGKYFAGI 184 (192)
Q Consensus 160 ~~~~~~p~~~~~e~~~~lg~~la~~ 184 (192)
+..|+++++++|+++|++|++.
T Consensus 124 ---~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 124 ---DLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred ---eCCCCHHHHHHHHHHHHHHHhh
Confidence 2468999999999999999753
No 15
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.86 E-value=8.3e-22 Score=144.62 Aligned_cols=130 Identities=28% Similarity=0.345 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCC--CCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGA--GPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFK 79 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~--~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k 79 (192)
.|||+++++.+++.+++ .|++++++++.+. +.++|.++.. |..+|......+++.+||+|||+||+|++++|++||
T Consensus 13 ~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK 90 (152)
T PF03358_consen 13 NSNTRKLAEAVAEQLEE-AGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLK 90 (152)
T ss_dssp TSHHHHHHHHHHHHHHH-TTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHH
T ss_pred CCHHHHHHHHHHHHHHH-cCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhh
Confidence 59999999999999999 4999999999997 4445554332 332333333479999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCc
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
+|+|++.. +....+.+|++++++++|+..|+ ..+...+...+..+||.+++..+
T Consensus 91 ~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~~~ 144 (152)
T PF03358_consen 91 NFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPSGV 144 (152)
T ss_dssp HHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECCSE
T ss_pred HHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCCcE
Confidence 99999964 33467999999999888765544 45678888888899999998743
No 16
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.84 E-value=8.3e-20 Score=138.74 Aligned_cols=161 Identities=17% Similarity=0.095 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
.++|.++++.+++.+.+ .|++++++|+.++.+.++...+.. .++. ....++|.+||+|||+||+||+++|+.||+|
T Consensus 13 ~S~t~~l~~~~~~~l~~-~g~ev~~idL~~l~~~~~~~~~~~--~~~~-~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~ 88 (191)
T PRK10569 13 PSRSSALLEYAREWLNG-LGVEVYHWNLQNFAPEDLLYARFD--SPAL-KTFTEQLAQADGLIVATPVYKASFSGALKTL 88 (191)
T ss_pred CChHHHHHHHHHHHHHh-CCCEEEEEEccCCChHHHHhccCC--CHHH-HHHHHHHHHCCEEEEECCccCCCCCHHHHHH
Confidence 57999999999999998 599999999998755333221111 1111 1247899999999999999999999999999
Q ss_pred HHHhccccccccCCCCcEEEEEecCCCCCCcchHH-HHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 82 LDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~-~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
||++. ...|.||++++++++|.. ++. ..+ ..++..+..+|+.+++.+..... ... ..+
T Consensus 89 iD~l~----~~~l~~K~v~iiat~G~~-~~~-~~~~~~lr~~l~~l~a~~~~~~~~~~~-----------~~~--~~~-- 147 (191)
T PRK10569 89 LDLLP----ERALEHKVVLPLATGGSV-AHM-LAVDYALKPVLSALKAQEILHGVFADD-----------SQV--IDY-- 147 (191)
T ss_pred HHhCC----hhhhCCCEEEEEEecCCc-hhH-HHHHHHHHHHHHHcCCeecCceEEEec-----------hhh--hcc--
Confidence 99985 356999999999997554 332 334 35556677889988776543210 000 001
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 029479 161 DGSRQPSELELAQAFHQGKYFAGITKK 187 (192)
Q Consensus 161 ~~~~~p~~~~~e~~~~lg~~la~~~~~ 187 (192)
+.+...+++..++.+.+.+++++.+..
T Consensus 148 d~~~~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 148 HHQPQFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHcc
Confidence 112345889999999999999877643
No 17
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.82 E-value=1.9e-19 Score=135.17 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcC-CCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMG-AGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~-~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
.++|.+|++.+.+++.+..|++++++||.++.+. +..|. .+..++......+++.+||+|||+||+||+++|++||+
T Consensus 12 ~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn 89 (174)
T TIGR03566 12 PSRTLALVEALVAELAARLGISPRTIDLADLAPS--LGGALWRSQLPPDAERILQAIESADLLVVGSPVYRGSYTGLFKH 89 (174)
T ss_pred CChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChh--hccccccCCCCHHHHHHHHHHHHCCEEEEECCcCcCcCcHHHHH
Confidence 5899999999999986424899999999875332 21111 00011111224789999999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
|||++. ...|.||++++++++|...++. .....+...+...|+.+++..+... ...++
T Consensus 90 ~lD~~~----~~~l~~K~~~~v~~~g~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~----------------~~~~~- 147 (174)
T TIGR03566 90 LFDLVD----PNALIGKPVLLAATGGSERHAL-MVEHQLRPLFGFFQALTLPTGVYAS----------------DADFA- 147 (174)
T ss_pred HHHhcC----HhHhCCCEEEEEEecCCccchH-HHHHHHHHHHHHhCcccccceEEEE----------------hhhhc-
Confidence 999986 2568999999998876544332 2233455566678877765432210 01121
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029479 161 DGSRQPSELELAQAFHQGKYFAGITK 186 (192)
Q Consensus 161 ~~~~~p~~~~~e~~~~lg~~la~~~~ 186 (192)
+|. ..+++..++++.+.+.+++.+.
T Consensus 148 ~g~-l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 148 DYR-LASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred ccc-ccCHHHHHHHHHHHHHHHHHhc
Confidence 222 3477788999999988887654
No 18
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.79 E-value=1.8e-18 Score=129.40 Aligned_cols=158 Identities=17% Similarity=0.104 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
.++|.++++.+.+.+++ .|.+++++|+.++.. ..|..|.. ..++. ....+++.+||+|||+||+||+++|+.+|+|
T Consensus 12 ~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~-~~~~~~~~-~~~~~-~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~ 87 (171)
T TIGR03567 12 PSRSSALLRHVREALQE-QGVEVDHLSVRDLPA-EDLLFARF-DSPAI-KAATAQVAQADGVVVATPVYKASYSGVLKAL 87 (171)
T ss_pred CChHHHHHHHHHHHHHH-CCCeEEEEEecCCCh-HHhhhcCC-CCHHH-HHHHHHHHHCCEEEEECCcccCCCCHHHHHH
Confidence 58999999999999998 588999999988643 22322211 01111 1247899999999999999999999999999
Q ss_pred HHHhccccccccCCCCcEEEEEecCCCCCCcchHH-HHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 82 LDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~-~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
||++. ...|.+|++++++++|.. ++. ..+ ..+...|...|+.++...+..+.. ...++.
T Consensus 88 iD~~~----~~~l~~K~v~~~~~gg~~-~~~-~~~~~~l~~~l~~l~~~~~~~~v~~~~~--------------~~~~d~ 147 (171)
T TIGR03567 88 LDLLP----QRALRGKVVLPIATGGSI-AHL-LAIDYALKPVLSALGARHILPGVFALDS--------------QIERDE 147 (171)
T ss_pred HHhCC----hhhhCCCEEEEEEcCCch-hHH-HHHHHHHHHHHHHcCCccccceEEEEhh--------------Hhcccc
Confidence 99985 356899999988876543 222 223 245666778888654443321100 001222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 029479 161 DGSRQPSELELAQAFHQGKYFAG 183 (192)
Q Consensus 161 ~~~~~p~~~~~e~~~~lg~~la~ 183 (192)
+|....+++..+++++++++++.
T Consensus 148 ~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 148 DGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred CCccccCHHHHHHHHHHHHHHHh
Confidence 23322467778888888888764
No 19
>PRK09267 flavodoxin FldA; Validated
Probab=99.78 E-value=1.9e-17 Score=123.60 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCC-CCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~-~~~~~~~k 79 (192)
++|||+++|+.|++.+.+ .+++++++.+. ...++.++|.||||+|+|+ |.+++.++
T Consensus 11 ~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~--------------------~~~~l~~~d~vi~g~pt~~~G~~~~~~~ 67 (169)
T PRK09267 11 DTGNTEDIAKMIQKKLGK---DVADVVDIAKA--------------------SKEDFEAYDLLILGIPTWGYGELQCDWD 67 (169)
T ss_pred CCChHHHHHHHHHHHhCC---CceEEEEhhhC--------------------CHhhHhhCCEEEEEecCcCCCCCCHHHH
Confidence 589999999999999964 37788888752 2367899999999999996 88889999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCC--CcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcce
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGG--GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGT 157 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g--~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (192)
.|++.+. ...|+||++++|++++...- .....+..+.+.|...|+.+++.....++.++....+.++.++|..
T Consensus 68 ~fl~~~~----~~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~- 142 (169)
T PRK09267 68 DFLPELE----EIDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLA- 142 (169)
T ss_pred HHHHHHh----cCCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEE-
Confidence 9999874 24689999999998654311 1123556777888889999998744445555554445566666653
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 029479 158 FAGDGSRQPSELELAQAFHQGKYFAGI 184 (192)
Q Consensus 158 ~~~~~~~~p~~~~~e~~~~lg~~la~~ 184 (192)
. |.+..++..+ ++.+++.+.|...
T Consensus 143 ~--d~~~~~~~td-~~i~~w~~~i~~~ 166 (169)
T PRK09267 143 L--DEDNQSELTD-ERIEAWVKQIKPE 166 (169)
T ss_pred e--cCCCchhhhH-HHHHHHHHHHHHH
Confidence 2 3344455556 8888888887653
No 20
>PRK12359 flavodoxin FldB; Provisional
Probab=99.74 E-value=2.5e-16 Score=117.43 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
.+|||+.+|+.|++.+. +..++++++.+. ..+++.++|.||||+||| .+.++..+.
T Consensus 10 ~TGNTe~vAe~I~~~lg---~~~v~v~~i~~~--------------------~~~~l~~yD~iIlG~pTw~~Gel~~d~~ 66 (172)
T PRK12359 10 STCYTEMAAEKIRDIIG---EELVDLHNLKDD--------------------PPKLMEQYDVLILGIPTWDFGEIQEDWE 66 (172)
T ss_pred CCCHHHHHHHHHHHHhC---CCeEEEEEcccC--------------------ChhHHccCCEEEEEecccCCCcCcHHHH
Confidence 48999999999999883 235788888763 247899999999999999 677889999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCC-CCC-cchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcc-cCC-CCCc
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GGG-QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVK-GGS-PYGA 155 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~-~g~-~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~-~~~-~~g~ 155 (192)
.|++.+. ...|+||++++|+++++. ++. ...++..+.+.|...|..+|+.....++.|..+..+. .+. +.|.
T Consensus 67 ~~~~~l~----~~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl 142 (172)
T PRK12359 67 AVWDQLD----DLNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGL 142 (172)
T ss_pred HHHHHHh----hCCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEE
Confidence 9999885 356999999999987753 222 1235567888888899999998888888888888776 343 7775
Q ss_pred ceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029479 156 GTFAGDGSRQPSELELAQAFHQGKYFAGIT 185 (192)
Q Consensus 156 ~~~~~~~~~~p~~~~~e~~~~lg~~la~~~ 185 (192)
. + |-.++ ++..-+|..++.+.|....
T Consensus 143 ~-l--D~~nq-~~~t~~ri~~W~~~~~~~~ 168 (172)
T PRK12359 143 A-L--DEVNQ-YDLSDERIQQWCEQILLEM 168 (172)
T ss_pred E-E--cCCCc-hhhhHHHHHHHHHHHHHHH
Confidence 2 2 22223 2335677888877776443
No 21
>PRK00170 azoreductase; Reviewed
Probab=99.72 E-value=5.7e-17 Score=124.16 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHhhhcC--CceEEEEEcCCCCCHHHhh-----hcCCCC-C--------CCCCCCChhHHhhcCEEEEe
Q 029479 3 GHVEKLAEEIQKGAASVE--GVEAKLWQVPETLSEDVLG-----KMGAGP-K--------SDVPTITPNELAEADGILLG 66 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~--g~~v~~~~l~~~~~~~~~~-----~~~~~~-~--------~d~~~~~~~~l~~aD~ivig 66 (192)
|||.+|++.+.+++++ . |.+|+++||.+... +.+. .+..+. + .|......++|.+||+|||+
T Consensus 16 s~s~~l~~~~~~~l~~-~~~~~~v~~~dL~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~ 93 (201)
T PRK00170 16 SQSMQLGDAFIEAYKE-AHPDDEVTVRDLAAEPI-PVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIA 93 (201)
T ss_pred cHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCC-CCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEe
Confidence 8999999999999988 4 78999999988643 1111 111111 0 01111236889999999999
Q ss_pred cccCCCCchHHHHHHHHHhcccc-----c----cccCCCCcEEEEEecCCCCCC--cchHHHHHHHHHHHcCCEEecC
Q 029479 67 FPTRFGMMAAQFKAFLDATGGLW-----R----SQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 67 sP~y~~~~~~~~k~fld~~~~~~-----~----~~~l~gK~~~~~~~~g~~~g~--~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
||+||+++|++||+|||++.... . ...++||++.+++++|+..+. .......+...+...|+..+..
T Consensus 94 sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 171 (201)
T PRK00170 94 APMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFLGFIGITDVEF 171 (201)
T ss_pred ecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHHHhcCCCceEE
Confidence 99999999999999999986321 0 134799999999987764322 1233445555566678876653
No 22
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.72 E-value=3.1e-16 Score=116.93 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
++|||+++|+.|++.+.+ .+++++++.+. ...++.++|.||||+||| .+.+|..++
T Consensus 9 ~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~--------------------~~~~l~~~d~ii~gspty~~g~~p~~~~ 65 (167)
T TIGR01752 9 DTGNTEGIAEKIQKELGE---DDVDVFNIAKA--------------------SKEDLNAYDKLILGTPTWGVGELQEDWE 65 (167)
T ss_pred CCChHHHHHHHHHHHhCC---CceEEEEcccC--------------------CHhHHhhCCEEEEEecCCCCCcCcHHHH
Confidence 589999999999999954 36788888763 236799999999999999 577888999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCC-CC-CcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccC-CCCCcc
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGG-SPYGAG 156 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~-~g-~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~-~~~g~~ 156 (192)
.|++.+. ...++||++++|++++.. ++ ....++..+.+.|...|+.+++.....++.++++..+..+ .+.|..
T Consensus 66 ~fl~~l~----~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~ 141 (167)
T TIGR01752 66 DFLPTLE----ELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLA 141 (167)
T ss_pred HHHHHhh----cCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEE
Confidence 9999885 246899999999986532 22 1223567788888899999999866666666554443322 222221
Q ss_pred eecCCCCCCCCHHH--HHHHHHHHHHHH
Q 029479 157 TFAGDGSRQPSELE--LAQAFHQGKYFA 182 (192)
Q Consensus 157 ~~~~~~~~~p~~~~--~e~~~~lg~~la 182 (192)
...|++++ -+++.++.+.|-
T Consensus 142 ------~~~~~~~~~~~~r~~~w~~~~~ 163 (167)
T TIGR01752 142 ------LDEDNQPDLTEERIEKWVEQIK 163 (167)
T ss_pred ------ecCCCchhhhHHHHHHHHHHHH
Confidence 12344444 466666665554
No 23
>PRK09271 flavodoxin; Provisional
Probab=99.72 E-value=1e-16 Score=118.66 Aligned_cols=134 Identities=14% Similarity=0.080 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCc-hHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMM-AAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~-~~~~k 79 (192)
|+|||++||+.|++++++ .|++++++++.+....+ ...++.++|+||||||||+++. |..++
T Consensus 10 ~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~----------------~~~~~~~~d~vilgt~T~~~G~~p~~~~ 72 (160)
T PRK09271 10 LSGNTREVAREIEERCEE-AGHEVDWVETDVQTLAE----------------YPLDPEDYDLYLLGTWTDNAGRTPPEMK 72 (160)
T ss_pred CCchHHHHHHHHHHHHHh-CCCeeEEEecccccccc----------------cccCcccCCEEEEECcccCCCcCCHHHH
Confidence 799999999999999998 59999988887542211 1356789999999999997554 66799
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCC--cchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcce
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGT 157 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~--~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (192)
.|++.+.. ...++|++++|++++...++ ...+...+...|... ...+.+
T Consensus 73 ~f~~~l~~----~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~-------------------- 123 (160)
T PRK09271 73 RFIAELAE----TIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKI-------------------- 123 (160)
T ss_pred HHHHHHHH----HhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceee--------------------
Confidence 99999852 33478999999998422221 113445555555421 122221
Q ss_pred ecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q 029479 158 FAGDGSRQPSE-LELAQAFHQGKYFAGIT 185 (192)
Q Consensus 158 ~~~~~~~~p~~-~~~e~~~~lg~~la~~~ 185 (192)
+..|++ .++++++++++++++.+
T Consensus 124 -----~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 124 -----EQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred -----ecCCccchhHHHHHHHHHHHHHHh
Confidence 234554 56899999999999876
No 24
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.71 E-value=4.3e-16 Score=120.12 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCC--ChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI--TPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~--~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
-++.++++.+++.+.+ .|++++++|+.++..-. . ..++.|.. ..+.+.+||++||+||.||+++|+.+||
T Consensus 40 S~n~~la~~~~~~~~~-~g~~v~~idl~~lPl~~-~------d~~~~p~v~~l~~~v~~ADgvii~TPEYn~sipg~LKN 111 (219)
T TIGR02690 40 SYSRLLAEEAARLLGC-EGRETRIFDPPGLPLPD-A------AHADHPKVRELRQLSEWSEGQVWCSPERHGAITGSQKD 111 (219)
T ss_pred chHHHHHHHHHHHHhh-cCCEEEEeCcccCCCCC-c------CcccCHHHHHHHHHHHhCCEEEEeCCccccCcCHHHHH
Confidence 3578899999999987 49999999998753110 0 00112211 3578999999999999999999999999
Q ss_pred HHHHhccccc-cccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceec
Q 029479 81 FLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 81 fld~~~~~~~-~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
+||.+...|. ...|.+|++++++++|+.. + ..++..+...|...++.+++..+.++.. ...|+
T Consensus 112 aiDwls~~~~~~~~~~~KpvaivgaSgg~~-g-~ra~~~LR~vl~~l~a~v~p~~v~i~~a--------------~~~fd 175 (219)
T TIGR02690 112 QIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ-S-FNAVNILRRLGRWMRMPTIPNQSSVAKA--------------FDEFD 175 (219)
T ss_pred HHHhcccCcccccccCCCcEEEEEeCCcHh-H-HHHHHHHHHHHHHCCCccccchhhhhhh--------------HhhcC
Confidence 9999975432 1358999999988765433 2 3467788888889999998875433110 11133
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 029479 160 GDGSRQPSELELAQAFHQGKYFAGITKKLK 189 (192)
Q Consensus 160 ~~~~~~p~~~~~e~~~~lg~~la~~~~~~~ 189 (192)
.+|. ..+++..+..+.+.+.+...++..+
T Consensus 176 ~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 176 EAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 2343 4567778888889999888776543
No 25
>PRK01355 azoreductase; Reviewed
Probab=99.70 E-value=3.4e-16 Score=119.91 Aligned_cols=132 Identities=17% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHhhhc-CCceEEEEEcCCCCCHHHhhhc--C-CCCCCCCCCCChhHHhhcCEEEEecccCCCCchHH
Q 029479 2 YGHVEKLAEEIQKGAASV-EGVEAKLWQVPETLSEDVLGKM--G-AGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQ 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~~--~-~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~ 77 (192)
.|||.+|++.+++++++. .+.+|+++||.+.....++..+ . .+..++......+++.+||+|||+||+||+++|++
T Consensus 16 ~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~y~~~ipa~ 95 (199)
T PRK01355 16 KSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPMTNFNVPAT 95 (199)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCccccCChHH
Confidence 589999999999999873 2589999999986432111111 1 11112222234789999999999999999999999
Q ss_pred HHHHHHHhccc---c-----c----cccCCCCcEEEEEecCCCCCCc--chHHHHHHHHHHHcCCEEecC
Q 029479 78 FKAFLDATGGL---W-----R----SQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 78 ~k~fld~~~~~---~-----~----~~~l~gK~~~~~~~~g~~~g~~--~~~~~~~~~~l~~~g~~vv~~ 133 (192)
||+|||++... + . ...++||++.+++++|.+.+.. ......+...+...|+..+..
T Consensus 96 LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 165 (199)
T PRK01355 96 LKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLGAKVVDS 165 (199)
T ss_pred HHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcCCCceeE
Confidence 99999998532 1 0 1247899999999988653322 234455556666778877653
No 26
>PRK09739 hypothetical protein; Provisional
Probab=99.67 E-value=1.9e-16 Score=121.25 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhh--hc--C---CCCCCCCCCCChhHHhhcCEEEEecccCCCCc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG--KM--G---AGPKSDVPTITPNELAEADGILLGFPTRFGMM 74 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~--~~--~---~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~ 74 (192)
.|+|.+|++.+++++++ .|.+++++||.+..++++.. .+ . .|...+......++|.+||.|||++|+||+++
T Consensus 16 ~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~ 94 (199)
T PRK09739 16 DSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSF 94 (199)
T ss_pred CCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcc
Confidence 58899999999999998 48999999998864332221 11 1 11111111234789999999999999999999
Q ss_pred hHHHHHHHHHhccc-cc---cccCCCCcEEEEEecCCCC
Q 029479 75 AAQFKAFLDATGGL-WR---SQQLAGKPAGIFYSTGSQG 109 (192)
Q Consensus 75 ~~~~k~fld~~~~~-~~---~~~l~gK~~~~~~~~g~~~ 109 (192)
|+.||+|||++... +. ...+.+|++.++.+.|+..
T Consensus 95 Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 95 PAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred hHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 99999999998532 10 1347899998888766543
No 27
>PRK13556 azoreductase; Provisional
Probab=99.66 E-value=1.9e-15 Score=116.57 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHhhhc-CCceEEEEEcCCCCC----HHHhhhcCCCC--CC---------CCCCCChhHHhhcCEEEE
Q 029479 2 YGHVEKLAEEIQKGAASV-EGVEAKLWQVPETLS----EDVLGKMGAGP--KS---------DVPTITPNELAEADGILL 65 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~-~g~~v~~~~l~~~~~----~~~~~~~~~~~--~~---------d~~~~~~~~l~~aD~ivi 65 (192)
.++|.++++++++.+++. .|.+|+++||.+... .+....|.... +. +......++|.+||.|||
T Consensus 16 ~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iVi 95 (208)
T PRK13556 16 QAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVADKYLNQFLEADKVVF 95 (208)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHCCEEEE
Confidence 589999999999999873 278999999987533 11222222211 10 111123689999999999
Q ss_pred ecccCCCCchHHHHHHHHHhcccc-----c----cccCCCCcEEEEEecCCCCC-----CcchHHHHHHHHHHHcCCEEe
Q 029479 66 GFPTRFGMMAAQFKAFLDATGGLW-----R----SQQLAGKPAGIFYSTGSQGG-----GQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 66 gsP~y~~~~~~~~k~fld~~~~~~-----~----~~~l~gK~~~~~~~~g~~~g-----~~~~~~~~~~~~l~~~g~~vv 131 (192)
++|.||+++|+.||+|||++...- . ...+.+|++.+++++|+... +.......+...+...|+..+
T Consensus 96 ~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l~~il~~~G~~~~ 175 (208)
T PRK13556 96 AFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYVASMMGFFGVTNM 175 (208)
T ss_pred eccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHHHHHHHhcCCCce
Confidence 999999999999999999997431 0 12488999999998766431 111233456666667888776
Q ss_pred cC
Q 029479 132 PI 133 (192)
Q Consensus 132 ~~ 133 (192)
..
T Consensus 176 ~~ 177 (208)
T PRK13556 176 ET 177 (208)
T ss_pred eE
Confidence 53
No 28
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.62 E-value=8.1e-15 Score=106.21 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEE-EEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAK-LWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~ 78 (192)
++|||++||+.|++.+.+ .|++++ ++++.+.. ....++.++|.||||||+| ++.+|+.+
T Consensus 10 ~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~~------------------~~~~~~~~~d~iilgs~t~~~g~~p~~~ 70 (140)
T TIGR01754 10 LSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTLA------------------DAPLDPENYDLVFLGTWTWERGRTPDEM 70 (140)
T ss_pred CCChHHHHHHHHHHHHhh-CCeeEEecccccccc------------------cCcCChhhCCEEEEEcCeeCCCcCCHHH
Confidence 689999999999999988 588887 55555320 0124678899999999998 56677899
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCC--cchHHHHHHHHHH
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLV 124 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~--~~~~~~~~~~~l~ 124 (192)
+.|++.+. .++|++++|++++...++ .-.++..+...|.
T Consensus 71 ~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 71 KDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred HHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 99999984 378999999998543322 1135566666653
No 29
>PRK06934 flavodoxin; Provisional
Probab=99.60 E-value=5.5e-15 Score=113.89 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCC-CCCCCC--ChhHHhhcCEEEEecccCCCCchHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPK-SDVPTI--TPNELAEADGILLGFPTRFGMMAAQ 77 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~-~d~~~~--~~~~l~~aD~ivigsP~y~~~~~~~ 77 (192)
+.|||+++|+.|++.+.. .=.+++..+....+..+.......... +..|.. ..+++.+||.|+||+|+||+.+|+.
T Consensus 69 ~~GnTk~vAe~Ia~~~ga-Dl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~ 147 (221)
T PRK06934 69 VLGSTQYVAQIIQEETGG-DLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMV 147 (221)
T ss_pred CCCHHHHHHHHHHHHHCC-CEEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchhhccccHH
Confidence 469999999999998833 112333333332222222221111111 112321 2579999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHH
Q 029479 78 FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 122 (192)
Q Consensus 78 ~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~ 122 (192)
|+.||++. +++||.++.|++.|+++. ..++..+.+.
T Consensus 148 V~tFLe~~-------d~~GK~I~pF~T~ggsg~--g~s~~~i~~l 183 (221)
T PRK06934 148 MYSFFEQH-------DFSGKTLIPFTTHGGSRF--SDSLREIKRL 183 (221)
T ss_pred HHHHHHhc-------CCCCCEEEEEEecCCCCc--cchHHHHHHH
Confidence 99999986 589999999999865432 3345555543
No 30
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.58 E-value=2.9e-14 Score=103.41 Aligned_cols=117 Identities=26% Similarity=0.261 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCC-chHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM-MAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~-~~~~~k 79 (192)
|+|||++||+.|++++++ .|++++++++.+.+.. ..++.+++.+||++|||+.+ +|..++
T Consensus 6 ~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~sT~~~g~~p~~~~ 66 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDDS------------------PSDLSEYDLLIFGVSTYGEGEPPDNAK 66 (143)
T ss_dssp SSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCHH------------------HHHHCTTSEEEEEEEEETTTEESGGGH
T ss_pred CchhHHHHHHHHHHHHHH-cCCceeeechhhhhhh------------------hhhhhhhceeeEeecccCCCcchhhhh
Confidence 699999999999999998 5999999999985211 35899999999999999855 554444
Q ss_pred HHHHHhcccc----ccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 80 AFLDATGGLW----RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 80 ~fld~~~~~~----~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
.|+..+...+ ....++++++++|+.+++..++.-.+...+.+.|...|+.++.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~ 127 (143)
T PF00258_consen 67 EFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLE 127 (143)
T ss_dssp HHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEE
T ss_pred hhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEE
Confidence 3333332221 12468999999999987765543346778999999999999986554
No 31
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.52 E-value=1.7e-13 Score=104.82 Aligned_cols=129 Identities=25% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHhhhcCC-ceEEEEEcCCCCCHHHhhh-cCC----CC--C-CCC-CCCChhHHhhcCEEEEecccCC
Q 029479 2 YGHVEKLAEEIQKGAASVEG-VEAKLWQVPETLSEDVLGK-MGA----GP--K-SDV-PTITPNELAEADGILLGFPTRF 71 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~-~~~----~~--~-~d~-~~~~~~~l~~aD~ivigsP~y~ 71 (192)
.++|.+|++.+.+++++. | .+|+++||.+. +.+.+.. +.. .. . .|. ... .+++.+||.|||++|+||
T Consensus 14 ~S~s~~l~~~~~~~~~~~-~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~AD~iV~~~Pl~~ 90 (199)
T PF02525_consen 14 GSFSRALADAFLEGLQEA-GPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELLWADHIVFAFPLYW 90 (199)
T ss_dssp TSHHHHHHHHHHHHHHHH-TTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHHHSSEEEEEEEEBT
T ss_pred cCHHHHHHHHHHHHHHHc-CCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHHHcCcceEecccee
Confidence 368999999999999994 8 89999999986 3222211 000 00 0 011 111 389999999999999999
Q ss_pred CCchHHHHHHHHHhccc---c--------ccccCCCCcEEEEEecCCCC---C---C----cchHHHHHHHHHHHcCCEE
Q 029479 72 GMMAAQFKAFLDATGGL---W--------RSQQLAGKPAGIFYSTGSQG---G---G----QETTPLTAITQLVHHGMIF 130 (192)
Q Consensus 72 ~~~~~~~k~fld~~~~~---~--------~~~~l~gK~~~~~~~~g~~~---g---~----~~~~~~~~~~~l~~~g~~v 130 (192)
+++|+.||.|||++... + ....|+||++.+++++|+.. + . .+..+..+...+...|+..
T Consensus 91 ~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~G~~~ 170 (199)
T PF02525_consen 91 FSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGILKFCGIKD 170 (199)
T ss_dssp TBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHHHHTTEEE
T ss_pred cccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHHHhCCCce
Confidence 99999999999998431 1 13568999999999988651 1 1 1223334555566789999
Q ss_pred ecC
Q 029479 131 VPI 133 (192)
Q Consensus 131 v~~ 133 (192)
+..
T Consensus 171 ~~~ 173 (199)
T PF02525_consen 171 VES 173 (199)
T ss_dssp EEE
T ss_pred eeE
Confidence 864
No 32
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.51 E-value=5.7e-14 Score=105.64 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
++|||+++|+.|++.+.. |++++++++.+. ...++.+||.||||||+|+|.+++.++.
T Consensus 10 ~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~--------------------~~~~l~~yD~vIlGspi~~G~~~~~~~~ 67 (177)
T PRK11104 10 RDGQTRKIASYIASELKE--GIQCDVVNLHRI--------------------EEPDLSDYDRVVIGASIRYGHFHSALYK 67 (177)
T ss_pred CCChHHHHHHHHHHHhCC--CCeEEEEEhhhc--------------------CccCHHHCCEEEEECccccCCcCHHHHH
Confidence 589999999999999975 789999998763 1257899999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTG 106 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g 106 (192)
|+++.. ..|++|++++|+++.
T Consensus 68 fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 68 FVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHHHH-----HHhCCCeEEEEEech
Confidence 999874 579999999999874
No 33
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.51 E-value=4.1e-13 Score=97.90 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
++|||+.+|+.+++.+.+ .|.++++++..+ .+++.++|.+||++||| .|.+|...+
T Consensus 11 ~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~----------------------~~~l~~~~~li~~~sT~G~Ge~p~~~~ 67 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEE-AGFSTETLHGPL----------------------LDDLSASGLWLIVTSTHGAGDLPDNLQ 67 (146)
T ss_pred CchHHHHHHHHHHHHHHH-cCCceEEeccCC----------------------HHHhccCCeEEEEECCCCCCCCChhHH
Confidence 589999999999999998 599998877543 36788999999999999 799999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCc
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
.|++.+... ...|+|+++++|+.+.+.+...-.....+.+.|..+|...+....
T Consensus 68 ~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~ 121 (146)
T PRK09004 68 PFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETL 121 (146)
T ss_pred HHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccE
Confidence 999988531 236899999999998776533234567788888899999887643
No 34
>PRK13555 azoreductase; Provisional
Probab=99.48 E-value=4.1e-12 Score=97.77 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHhhhcC-CceEEEEEcCCCCCH----HHhhhcCCCC-----CCC----CC--CCChhHHhhcCEEEEe
Q 029479 3 GHVEKLAEEIQKGAASVE-GVEAKLWQVPETLSE----DVLGKMGAGP-----KSD----VP--TITPNELAEADGILLG 66 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~----~~~~~~~~~~-----~~d----~~--~~~~~~l~~aD~ivig 66 (192)
..|.+|++.+++.+++.. +.+|+.+||.+..+. ..+....... .++ .+ ....+++.+||.|||+
T Consensus 17 S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AD~lvi~ 96 (208)
T PRK13555 17 AVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATVDQYLNQFLEADKVVFA 96 (208)
T ss_pred cHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHHHHHHHHHHHcCEEEEE
Confidence 568899999999998842 379999999986432 1111111110 000 01 1136899999999999
Q ss_pred cccCCCCchHHHHHHHHHhcccc---------ccccCCCCcEEEEEecCCCCCCc-----chHHHHHHHHHHHcCCEEe
Q 029479 67 FPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ-----ETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 67 sP~y~~~~~~~~k~fld~~~~~~---------~~~~l~gK~~~~~~~~g~~~g~~-----~~~~~~~~~~l~~~g~~vv 131 (192)
+|.||+++|+.+|+|||++...- ..+.++||++.++++.|+...+. ......+...|...|+.-+
T Consensus 97 ~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 97 FPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYVTTVLGFWGITNP 175 (208)
T ss_pred cCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHHHHHHHhcCCCce
Confidence 99999999999999999986420 11347999999999977644331 1122445555555666533
No 35
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.47 E-value=2.2e-13 Score=100.30 Aligned_cols=109 Identities=23% Similarity=0.327 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhh--hcCC-----C-CCCCCCCC--ChhHHhhcCEEEEecccC
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLG--KMGA-----G-PKSDVPTI--TPNELAEADGILLGFPTR 70 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~--~~~~-----~-~~~d~~~~--~~~~l~~aD~ivigsP~y 70 (192)
.+|||+++|+.|++.+ |+++.-+...+..+..... .+.. . .....|.. ...++.++|.|+||+|+|
T Consensus 9 ~tGnT~~vA~~Ia~~~----gadi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~lG~PvW 84 (156)
T PF12682_consen 9 RTGNTKKVAEKIAEKT----GADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDTIFLGTPVW 84 (156)
T ss_dssp SSSHHHHHHHHHHHCC----T-EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SEEEEEEEEE
T ss_pred CCchHHHHHHHHHHHH----CCCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCEEEEechHH
Confidence 4799999999999877 4454444333222220000 0000 0 01112322 246899999999999999
Q ss_pred CCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHH
Q 029479 71 FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 122 (192)
Q Consensus 71 ~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~ 122 (192)
|+.+|+.|..||+.. .++||.++.|+++|+++ ...++..+.+.
T Consensus 85 ~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs~--~~~~~~~l~~~ 127 (156)
T PF12682_consen 85 WGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGSG--FGNSLEDLKKL 127 (156)
T ss_dssp TTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCCC--hhHHHHHHHHH
Confidence 999999999999975 58999999999987643 23345555543
No 36
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.46 E-value=1.9e-13 Score=99.37 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
.||||+++|+.|++.+.+ .+ ..+++.+.. ....++.++|.||||||+|.+.+++.++.
T Consensus 7 ~~G~Tk~~A~~ia~~l~~-~~---~~v~~~~~~------------------~~~~~~~~yD~vi~gspiy~g~~~~~~~~ 64 (143)
T PF12724_consen 7 KTGNTKKIAEWIAEKLGE-EG---ELVDLEKVE------------------EDEPDLSDYDAVIFGSPIYAGRIPGEMRE 64 (143)
T ss_pred CCchHHHHHHHHHHHHhh-hc---cEEEHHhhh------------------hcccccccCCEEEEEEEEECCcCCHHHHH
Confidence 489999999999999976 34 444554310 01368999999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
|+++.. ..|++|++++|+++++...
T Consensus 65 fi~~~~-----~~l~~k~v~~f~~~~~~~~ 89 (143)
T PF12724_consen 65 FIKKNK-----DNLKNKKVALFSVGGSSPE 89 (143)
T ss_pred HHHHHH-----HHHcCCcEEEEEEeCCCCc
Confidence 999874 4689999999999887543
No 37
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.43 E-value=6.6e-13 Score=100.46 Aligned_cols=120 Identities=24% Similarity=0.339 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhhhcCC-ceEEEEEcCCCCCHHHhhhcCCCCCCCCCC---CChhHHhhcCEEEEecccCCCCchHHH
Q 029479 3 GHVEKLAEEIQKGAASVEG-VEAKLWQVPETLSEDVLGKMGAGPKSDVPT---ITPNELAEADGILLGFPTRFGMMAAQF 78 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~---~~~~~l~~aD~ivigsP~y~~~~~~~~ 78 (192)
.-|..+++.+.+.++. .+ .++..+++..-.+++.... ++.|. ...+.+.+||++||+||+|++++|+.+
T Consensus 14 S~~~~la~~~~~~l~~-~~~~~~~~~~~~lP~~~~d~~~------~~~p~~v~~~~~~i~~aD~li~~tPeYn~s~pg~l 86 (184)
T COG0431 14 SFNRALAEAAAKLLPA-GGEVEVEFDDLDLPLYNEDLEA------DGLPPAVQALREAIAAADGLIIATPEYNGSYPGAL 86 (184)
T ss_pred chHHHHHHHHHHhhcc-cCceEEEecccccCCCCcchhh------ccCCHHHHHHHHHHHhCCEEEEECCccCCCCCHHH
Confidence 3578899999999988 35 3444444422111111110 12222 136899999999999999999999999
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
|+.||.+.. ..|.+|++++++++++..++ ..+...++..+...++.+++.+
T Consensus 87 KnaiD~l~~----~~~~~Kpv~~~~~s~g~~~~-~~a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 87 KNAIDWLSR----EALGGKPVLLLGTSGGGAGG-LRAQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred HHHHHhCCH----hHhCCCcEEEEecCCCchhH-HHHHHHHHHHHHhcCceecccc
Confidence 999999973 46999999999998776554 3456777777888999998764
No 38
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.43 E-value=5.5e-12 Score=92.49 Aligned_cols=138 Identities=22% Similarity=0.175 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCC-chHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGM-MAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~-~~~~~k 79 (192)
++|||+.+|+.|++.+.+ .|.++.+...... ...++..+|.+++|||+|..+ .+..+.
T Consensus 11 ~tGnTe~vA~~i~~~l~~-~~~~~~~~~~~~~--------------------~~~~~~~~d~~~~g~~t~~~ge~~~~~~ 69 (151)
T COG0716 11 RTGNTEKVAEIIAEELGA-DGFEVDIDIRPGI--------------------KDDLLESYDELLLGTPTWGAGELPDDWY 69 (151)
T ss_pred CCCcHHHHHHHHHHHhcc-CCceEEEeecCCc--------------------chhhhccCCEEEEEeCCCCCCcCCccHH
Confidence 689999999999999998 5888844433321 123446999999999999655 555999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCC-cchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCccee
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~-~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
.|++.+.. ..+++|++++|+++.+.... .-.....+...+...|...++..-..+ +
T Consensus 70 ~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~-------------------~ 126 (151)
T COG0716 70 DFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLG-------------------Y 126 (151)
T ss_pred HHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccc-------------------e
Confidence 99999972 47999999999995544433 223456677777778754433221110 0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHH
Q 029479 159 AGDGSRQPSELELAQAFHQGKYFAGI 184 (192)
Q Consensus 159 ~~~~~~~p~~~~~e~~~~lg~~la~~ 184 (192)
..+..|++++.++++.+++++...
T Consensus 127 --~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 127 --IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred --eccCCCCCccHHHHHHHHHHHHhh
Confidence 002347888999999999988753
No 39
>PRK07116 flavodoxin; Provisional
Probab=99.42 E-value=1.5e-12 Score=96.35 Aligned_cols=110 Identities=23% Similarity=0.325 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHH------hhh-cCCCCCCCCCCC--ChhHHhhcCEEEEecccCC
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDV------LGK-MGAGPKSDVPTI--TPNELAEADGILLGFPTRF 71 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~------~~~-~~~~~~~d~~~~--~~~~l~~aD~ivigsP~y~ 71 (192)
.+|||+++|+.|++.+.. .. +++.....+..... ... .........|.. ...++.++|.||||+|+|+
T Consensus 12 ~tGnT~~iA~~Ia~~l~~-d~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~Iiig~Pv~~ 88 (160)
T PRK07116 12 ATGTTKKVAEKLAEVTGA-DL--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDVIFLGFPIWW 88 (160)
T ss_pred CCCcHHHHHHHHHHHhcC-Ce--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCEEEEECChhc
Confidence 479999999999999954 22 23333322111000 000 000000011110 1357899999999999999
Q ss_pred CCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHH
Q 029479 72 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 122 (192)
Q Consensus 72 ~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~ 122 (192)
+.+|+.++.|++++ .+.+|++++|+++|+++.+ .+...+.+.
T Consensus 89 ~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~g--~~~~~~~~~ 130 (160)
T PRK07116 89 YVAPRIINTFLESY-------DFSGKTVIPFATSGGSGIG--NAEKELKKS 130 (160)
T ss_pred cccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCcC--cHHHHHHHH
Confidence 99999999999975 4789999999998765422 233445443
No 40
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.37 E-value=2.5e-11 Score=89.53 Aligned_cols=73 Identities=30% Similarity=0.468 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
++|||+++|++|++.+.. .+++++.+. ...+.++|.|+||+++|.|++++.++.
T Consensus 7 ~TGNTkkvA~aI~~~l~~-----~~~~~~~~~---------------------~~~~~~yD~i~lG~w~d~G~~d~~~~~ 60 (160)
T PF12641_consen 7 RTGNTKKVAEAIAEALGA-----KDIVSVEEP---------------------PEDLEDYDLIFLGFWIDKGTPDKDMKE 60 (160)
T ss_pred CCChHHHHHHHHHHHCCC-----ceeEecccc---------------------ccCCCCCCEEEEEcCccCCCCCHHHHH
Confidence 589999999999999932 566777652 122899999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQ 108 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~ 108 (192)
||.++ +||++++|+|+|..
T Consensus 61 fl~~l---------~~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 61 FLKKL---------KGKKVALFGTAGAG 79 (160)
T ss_pred HHHHc---------cCCeEEEEEecCCC
Confidence 99874 78999999998764
No 41
>PRK08105 flavodoxin; Provisional
Probab=99.35 E-value=1.9e-11 Score=89.46 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
.+|||+.+|+.|++.+.+ .|+++.++++.+.. .....++|.|||++||| .|.+|..++
T Consensus 11 ~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~~--------------------~~~~~~~~~vi~~~sT~G~Ge~p~~~~ 69 (149)
T PRK08105 11 VYGNALLVAEEAEAILTA-QGHEVTLFEDPELS--------------------DWQPYQDELVLVVTSTTGQGDLPDSIV 69 (149)
T ss_pred CchHHHHHHHHHHHHHHh-CCCceEEechhhCC--------------------chhcccCCeEEEEECCCCCCCCChhHH
Confidence 489999999999999998 59999998876521 12234579999999999 788999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCc
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
.|++.+... ...|+|+++++|+.++..+...-.....+.+.|..+|...+....
T Consensus 70 ~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~ 123 (149)
T PRK08105 70 PLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERL 123 (149)
T ss_pred HHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccE
Confidence 999998631 126899999999998765422224567788888899999887643
No 42
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.27 E-value=1.7e-10 Score=86.86 Aligned_cols=130 Identities=20% Similarity=0.114 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHhhhc-CCceEEEEEcCCCCC----HHHhhhcCCCCCCC-C---------CCCChhHHhhcCEEEEec
Q 029479 3 GHVEKLAEEIQKGAASV-EGVEAKLWQVPETLS----EDVLGKMGAGPKSD-V---------PTITPNELAEADGILLGF 67 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~-~g~~v~~~~l~~~~~----~~~~~~~~~~~~~d-~---------~~~~~~~l~~aD~ivigs 67 (192)
..|.++++.+.+..++. .+.++..+||..... ...+.+.+...... . .+...+++..||.+||++
T Consensus 16 S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~l~~ef~aAD~vVi~~ 95 (202)
T COG1182 16 SVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDKLLEEFLAADKVVIAA 95 (202)
T ss_pred cHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHHHHHHHHhcCeEEEEe
Confidence 46889999999999864 467899999987632 22333222221110 1 112368999999999999
Q ss_pred ccCCCCchHHHHHHHHHhcccc---------ccccCCCCcEEEEEecCCCCCCc----chHHHHHHHHHHHcCCEEec
Q 029479 68 PTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ----ETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 68 P~y~~~~~~~~k~fld~~~~~~---------~~~~l~gK~~~~~~~~g~~~g~~----~~~~~~~~~~l~~~g~~vv~ 132 (192)
|-||.++|+++|+|||++.... ..+.+.||++.++.+.|+.++.. +.....+...|...|+.-+.
T Consensus 96 PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YLr~ilgF~Gitd~~ 173 (202)
T COG1182 96 PMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLRTILGFLGITDVE 173 (202)
T ss_pred cccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHHHHHhhhcCCCcce
Confidence 9999999999999999995321 13467899999999988776553 33556666666677776554
No 43
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.27 E-value=1.1e-10 Score=87.99 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhccc-cc----cccCC
Q 029479 21 GVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-WR----SQQLA 95 (192)
Q Consensus 21 g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~-~~----~~~l~ 95 (192)
+.+|+++||....+... .|. ....+.+.+||.|||.+|.||+++|+.||.|+|++... |. ...++
T Consensus 33 ~~~v~~~DL~~~~p~~~---------~d~-~~eq~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~ 102 (184)
T PRK04930 33 LEHVTVHDLYAHYPDFF---------IDI-PHEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALA 102 (184)
T ss_pred CCceEEEECcccCCCCC---------CCH-HHHHHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccC
Confidence 45899999988643110 011 11357899999999999999999999999999998642 21 13589
Q ss_pred CCcEEEEEecCCCCC-----Ccc-hHHHHHHHH----HHHcCCEEecC
Q 029479 96 GKPAGIFYSTGSQGG-----GQE-TTPLTAITQ----LVHHGMIFVPI 133 (192)
Q Consensus 96 gK~~~~~~~~g~~~g-----~~~-~~~~~~~~~----l~~~g~~vv~~ 133 (192)
||++.++.|.|++.. +.. .+++.+... +...||.+++.
T Consensus 103 gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 103 GKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSP 150 (184)
T ss_pred CCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCc
Confidence 999999888776421 111 244444443 33569988764
No 44
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=83.96 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=72.3
Q ss_pred HHHHHHHHhhh-cCCceEEEEEcCCCCCHH-HhhhcCCCCCCC-CCC---CChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 8 LAEEIQKGAAS-VEGVEAKLWQVPETLSED-VLGKMGAGPKSD-VPT---ITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 8 la~~i~~~~~~-~~g~~v~~~~l~~~~~~~-~~~~~~~~~~~d-~~~---~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
+|.++.+--++ ..|.+++.+|+.++.... ......-..-|. .+. +...+|..+|.|||.||.||+++|+.+|+.
T Consensus 29 ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~ivFvtPqYN~gypA~LKNA 108 (199)
T KOG4530|consen 29 IARAVIELTKESVPGLQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEADSIVFVTPQYNFGYPAPLKNA 108 (199)
T ss_pred HHHHHHHhhhccCCCCceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhcceEEEecccccCCCchHHHHH
Confidence 44444443333 247899999999862110 000000000011 111 125789999999999999999999999999
Q ss_pred HHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 82 LDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
+|+++ ..|.||++.+++ ||+-+|+ .....+.+......|.+.
T Consensus 109 lD~ly-----heW~gKPalivS-yGGhGGg--~c~~qL~~v~~fLkm~va 150 (199)
T KOG4530|consen 109 LDWLY-----HEWAGKPALIVS-YGGHGGG--RCQYQLRQVGVFLKMHVA 150 (199)
T ss_pred HHHhh-----hhhcCCceEEEE-ecCCCCc--hHHHHHHHHHhhheeeee
Confidence 99997 579999996655 4554443 234455555555666643
No 45
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.20 E-value=2.1e-10 Score=85.90 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=71.1
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhccc-
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL- 88 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~- 88 (192)
+++.+.+.+. .+|+++||.+..+.... |. ....+.+.+||.|||.+|.||+++|+.+|.|+|++...
T Consensus 18 ~al~~~~~~~--~~v~v~dL~~~~p~~~~---------dv-~~eq~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g 85 (176)
T PRK00871 18 KRMLEQARTL--EGVEIRSLYQLYPDFNI---------DI-AAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHG 85 (176)
T ss_pred HHHHHHHHhc--CCeEEEEChhhcCCcch---------hH-HHHHHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCC
Confidence 3444444442 37889998876442100 00 01357899999999999999999999999999998632
Q ss_pred cc----cccCCCCcEEEEEecCCC-----CCCcc---hHHHHHHHHHHHcCCEEecC
Q 029479 89 WR----SQQLAGKPAGIFYSTGSQ-----GGGQE---TTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 89 ~~----~~~l~gK~~~~~~~~g~~-----~g~~~---~~~~~~~~~l~~~g~~vv~~ 133 (192)
|. ...++||++.++.+.|++ .++.. .-+..+...+...||..++.
T Consensus 86 ~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~ 142 (176)
T PRK00871 86 WAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPP 142 (176)
T ss_pred ccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcce
Confidence 21 134899999887777654 12211 11223333344578888764
No 46
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=88.15 Aligned_cols=99 Identities=24% Similarity=0.262 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC---CChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT---ITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~---~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
|..+++.+++++++ .|+++...|+..+..+..... ++++.+. ...++|.+||.||+..|.||+++|+.||.|
T Consensus 15 ~~~~~~~~~~~~n~-~~~~v~~~dl~~~~fd~~~~~----~d~~~~~Dv~~E~e~l~~AD~ivlqfPlwW~~~PaiLKg~ 89 (189)
T COG2249 15 THALSDAALERLNE-AGHEVALKDLYALGFDPYLTY----PDGEFPIDVKAEQEKLLWADVIVLQFPLWWYSMPALLKGW 89 (189)
T ss_pred hHHHHHHHHHHHHH-cchHHHhhhhhhhcCCceeec----CccCCCCCHHHHHHHHHhcceEEEEcCchhccCcHHHHHH
Confidence 46788999999999 599998888876543322110 1101221 137899999999999999999999999999
Q ss_pred HHHhcccc----cc-----ccCCCCcEEEEEecCCC
Q 029479 82 LDATGGLW----RS-----QQLAGKPAGIFYSTGSQ 108 (192)
Q Consensus 82 ld~~~~~~----~~-----~~l~gK~~~~~~~~g~~ 108 (192)
||++.... .. ..|.||++.+++|.|.+
T Consensus 90 iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 90 IDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred HHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 99986431 11 46899999999998864
No 47
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.17 E-value=4.6e-11 Score=86.18 Aligned_cols=102 Identities=18% Similarity=0.295 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
++|+|.++|+.|+..|++ .|.+|++.|+... ...++.++|+||||+|+|.+.....++.
T Consensus 10 r~GqT~kIA~~iA~~L~e-~g~qvdi~dl~~~--------------------~~~~l~~ydavVIgAsI~~~h~~~~~~~ 68 (175)
T COG4635 10 RDGQTRKIAEYIASHLRE-SGIQVDIQDLHAV--------------------EEPALEDYDAVVIGASIRYGHFHEAVQS 68 (175)
T ss_pred CCCcHHHHHHHHHHHhhh-cCCeeeeeehhhh--------------------hccChhhCceEEEecchhhhhhHHHHHH
Confidence 479999999999999999 5999999998763 1247999999999999999999999999
Q ss_pred HHHHhccccccccCCCCcEEEEEecCCCCCCc--chHHHHHHHHHHHcCC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGM 128 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~--~~~~~~~~~~l~~~g~ 128 (192)
|+.+.. ..|..||.++|++.-...... ..+-..+..+|...-+
T Consensus 69 Fv~k~~-----e~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~~~W 113 (175)
T COG4635 69 FVKKHA-----EALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMKSPW 113 (175)
T ss_pred HHHHHH-----HHHhcCCceEEEeehhhcccccCchHHHHHHHHHhcCCC
Confidence 999975 579999999999854322221 1233466666654333
No 48
>PRK05723 flavodoxin; Provisional
Probab=99.16 E-value=1.4e-09 Score=79.61 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhc--CEEEEecccC-CCCchHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEA--DGILLGFPTR-FGMMAAQ 77 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~a--D~ivigsP~y-~~~~~~~ 77 (192)
++|||+.+|+.+++.+.+ .|.++.++...+ ..++.++ |.|||++||| .|.+|..
T Consensus 10 ~tG~ae~~A~~la~~l~~-~g~~~~~~~~~~----------------------~~~~~~~~~~~li~~~sT~G~Ge~Pd~ 66 (151)
T PRK05723 10 VYGTAEEVARHAESLLKA-AGFEAWHNPRAS----------------------LQDLQAFAPEALLAVTSTTGMGELPDN 66 (151)
T ss_pred CchHHHHHHHHHHHHHHH-CCCceeecCcCC----------------------HhHHHhCCCCeEEEEECCCCCCCCchh
Confidence 589999999999999988 588876543211 2444544 8999999999 5889999
Q ss_pred HHHHHHHhccccccccCCCCcEEEEEecCCCCCC-cchHHHHHHHHHHHcCCEEecCC
Q 029479 78 FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 78 ~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~-~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
...|++.+.... ...|+++++++|+.+...++. .-.+...+...|...|...+...
T Consensus 67 ~~~f~~~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~ 123 (151)
T PRK05723 67 LMPLYSAIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPM 123 (151)
T ss_pred HHHHHHHHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeecc
Confidence 999999886311 126999999999998776532 23466788888889998887654
No 49
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.96 E-value=1.2e-08 Score=89.87 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
++||++.+|+.+++.+++ .|.+++++++.++ ..+++.+.+.+||+++|| .|.+|..++
T Consensus 71 qTGnae~lA~~la~~l~~-~g~~~~v~~~~d~--------------------~~~~L~~~~~vl~v~ST~G~Ge~Pdna~ 129 (600)
T PRK10953 71 QTGNARRVAEQLRDDLLA-AKLNVNLVNAGDY--------------------KFKQIAQEKLLIVVTSTQGEGEPPEEAV 129 (600)
T ss_pred CchHHHHHHHHHHHHHHh-CCCCcEEechHhC--------------------CHhHhccCCeEEEEECCCCCCCCChhHH
Confidence 589999999999999998 5999999998774 247788999999999999 799999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecC
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
.|++.+.... ...|.|+++++|+.+++.+...-.+...+.+.|...|..-+..
T Consensus 130 ~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~ 182 (600)
T PRK10953 130 ALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLD 182 (600)
T ss_pred HHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 9999885211 1358999999999988875433345678888889999988754
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=98.90 E-value=2.5e-08 Score=88.04 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
++|||+.+|+.+++.+++ .|.++.+.++.++ ..+++.+++.+||+++|| .|.+|..++
T Consensus 68 qTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~--------------------~~~~l~~~~~li~v~ST~GeGe~Pdna~ 126 (597)
T TIGR01931 68 QTGNARRLAKRLAEKLEA-AGFSVRLSSADDY--------------------KFKQLKKERLLLLVISTQGEGEPPEEAI 126 (597)
T ss_pred CchHHHHHHHHHHHHHHh-CCCccEEechHHC--------------------CHhhcccCceEEEEeCCCCCCcCCHHHH
Confidence 589999999999999998 5999999998874 246788999999999999 789999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecC
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
.|++.+.... ...|+|+++++|+.+++.+...-.+...+.+.|...|...+..
T Consensus 127 ~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~ 179 (597)
T TIGR01931 127 SFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLP 179 (597)
T ss_pred HHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 9999885211 1358999999999987765332345677888888999988754
No 51
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.49 E-value=2.6e-06 Score=60.22 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
++|||+++ +++ .|.++..+.+.+. ...++ ++|.|+| ||+| .|.+|.++.
T Consensus 6 ~TGNte~f-------v~~-lg~~~~~i~~~~~--------------------d~~~~-~~~~vli-TyT~G~G~vP~~~~ 55 (125)
T TIGR00333 6 KTGNVQRF-------VEK-LGFQHIRIPVDET--------------------DDIHV-DQEFVLI-TYTGGFGAVPKQTI 55 (125)
T ss_pred ccccHHHH-------HHH-cCCCcEEeecCCc--------------------chhhc-CCCEEEE-ecCCCCCcCCHHHH
Confidence 68999999 334 2556655555431 12344 8999988 9999 566999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCC
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQ 108 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~ 108 (192)
.|++.+. . +..++|+|+...
T Consensus 56 ~Fle~~~------n---~~~gV~gSGn~n 75 (125)
T TIGR00333 56 SFLNKKH------N---LLRGVAASGNKV 75 (125)
T ss_pred HHHHhhh------h---cEEEEEEcCCCc
Confidence 9999874 2 788898886543
No 52
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.26 E-value=6.6e-06 Score=59.00 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=54.7
Q ss_pred HhhcCEEEEecccCC-----CCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHH-HcCCEE
Q 029479 57 LAEADGILLGFPTRF-----GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV-HHGMIF 130 (192)
Q Consensus 57 l~~aD~ivigsP~y~-----~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~-~~g~~v 130 (192)
+...+-+||.+|||. |.+|.+++.||+... -.....++++++....|. ......+.+. ..+
T Consensus 36 ~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gsGnr~~g~---~f~~a~~~i~~~~~--- 102 (134)
T PRK03600 36 LEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEH-------NRKLLRGVIASGNRNFGD---AFALAGDVISAKCQ--- 102 (134)
T ss_pred ccCCCCEEEEEeccCCCCcCCcccHHHHHHHhccc-------cCCcEEEEEEecCchHHH---HHHHHHHHHHHHhC---
Confidence 556788999999997 489999999998753 133466677765432222 1222223332 234
Q ss_pred ecCCccCCCCCccchhcccCCCCCcceecCCCCCCCCHHHHHHHHHHHHHH
Q 029479 131 VPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYF 181 (192)
Q Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~e~~~~lg~~l 181 (192)
|+..+. + ...++++|.++++++.+++
T Consensus 103 vp~l~k---------------------~----El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 103 VPLLYR---------------------F----ELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred CCeEEE---------------------E----ecCCCHHHHHHHHHHHHHH
Confidence 232232 1 2457789999999988887
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=96.26 E-value=0.045 Score=40.12 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhhhcC-CceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCC-----
Q 029479 1 MYGHVEKLAEEIQKGAASVE-GVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGM----- 73 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~----- 73 (192)
.+|||++.++.+..-+.+.. +.++..+++.+..+. . .+.+..-.-.|+.+||| .++
T Consensus 11 ~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~----------------~-~~~~~~~~p~vli~pTY~~gG~~~~~ 73 (154)
T PRK02551 11 LSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHE----------------T-TDFFPETEPFVAFLPTYLEGGNGIDN 73 (154)
T ss_pred CChhHHHHHHHHhcHHhhccccccceecccccccCc----------------c-ccccccCCCEEEEEeeecCCCCCccc
Confidence 37999999999876553311 334444554442110 0 01134446788999999 555
Q ss_pred -----chHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 74 -----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 74 -----~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
+|.++..|+..- ..+....++|+++
T Consensus 74 ~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsG 103 (154)
T PRK02551 74 GDVEILTTPLGDFIAYH-------DNAKRCLGIIGSG 103 (154)
T ss_pred CccccchHHHHHHHcch-------hhhhheEEEEeec
Confidence 677888887532 2245566777774
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=96.18 E-value=0.034 Score=47.68 Aligned_cols=111 Identities=15% Similarity=0.064 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k 79 (192)
.+||..-+|+.|...+.. .|..+.+..+.+++ .++|.+.+.|||...|- .|.+|..||
T Consensus 10 qTGtA~dvAe~l~Re~~r-~~~~~~V~s~Deyd--------------------~~~ll~~~~vvFVcSTTGqGe~P~Nmk 68 (574)
T KOG1159|consen 10 QTGTAQDVAESLGREAHR-RGLQCLVMSMDEYD--------------------VEKLLDERLVVFVCSTTGQGEEPDNMK 68 (574)
T ss_pred CcccHHHHHHHHHHHHHh-ccCCceEeeccccC--------------------HhHhccCceEEEEEecCCCCCCCccHH
Confidence 379999999999999988 48888888887753 47888999999988887 699999999
Q ss_pred HHHHHhccc-cccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 80 AFLDATGGL-WRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 80 ~fld~~~~~-~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
.|+.-+.+. ..+..|.+-..++++-+.+++.....+...+.+.|..+|..-+-
T Consensus 69 ~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~ 122 (574)
T KOG1159|consen 69 KFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVC 122 (574)
T ss_pred HHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCccccc
Confidence 998766421 11345788899999998877655445677888888888876553
No 55
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=91.99 E-value=1.3 Score=31.76 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=53.8
Q ss_pred HhhcCEEEEecccCCCC-----chHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHH-HHcCCEE
Q 029479 57 LAEADGILLGFPTRFGM-----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL-VHHGMIF 130 (192)
Q Consensus 57 l~~aD~ivigsP~y~~~-----~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l-~~~g~~v 130 (192)
+.=-+-.|+.+|||.++ +|.++-.||..- .-..+--++++++-.-.|... ...-+.+ .+.+..+
T Consensus 37 ~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSGN~NfG~~f---~~Ag~~iS~k~~vPl 106 (141)
T COG1780 37 IEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE-------HNRALCRGVIASGNRNFGDNF---ALAGDVISAKCGVPL 106 (141)
T ss_pred ccCCCCeEEEeccccCCCccCccCHHHHHHhccc-------cchhheEEEEecCCccHHHHH---HHHHHHHHHHhCCCE
Confidence 55566789999999765 889999998532 123334455555322222221 1111222 3456555
Q ss_pred ecCCccCCCCCccchhcccCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 029479 131 VPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 188 (192)
Q Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~e~~~~lg~~la~~~~~~ 188 (192)
+.. + ...-.++|.++.++...++.+.+...
T Consensus 107 Ly~-F---------------------------EL~GT~~Dv~~v~~~v~~~~~~~~~~ 136 (141)
T COG1780 107 LYR-F---------------------------ELLGTAEDVAAVRKGVTEFWKRAPQN 136 (141)
T ss_pred EEE-E---------------------------eccCCHHHHHHHHHHHHHHHHhCCcc
Confidence 421 1 12335789999888888887766543
No 56
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=91.14 E-value=0.67 Score=32.63 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCC-CC----ch
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRF-GM----MA 75 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~-~~----~~ 75 (192)
.+|||++.++.+..-+.. .-+.+... .+++.-.+=.|+.+|||. |. +|
T Consensus 6 ~tGNt~rFv~kL~~~~~~------~~i~~~~~---------------------~~~~~~~ep~vLitpTy~~G~~~~~vp 58 (122)
T PF07972_consen 6 LTGNTRRFVEKLGLYAPA------IRIPIREI---------------------SPDLEVDEPFVLITPTYGFGENDGGVP 58 (122)
T ss_dssp SSSHHHHHHHHH-S--SE------EEE-SSCT---------------------TSTS--SS-EEEEEE-BTTTBSSTSS-
T ss_pred CCcCHHHHHHHHcccchh------cccccccc---------------------cccccCCCCEEEEecccCCCCCCCCCC
Confidence 479999988776554422 22333221 122444456789999996 44 89
Q ss_pred HHHHHHHHH
Q 029479 76 AQFKAFLDA 84 (192)
Q Consensus 76 ~~~k~fld~ 84 (192)
.++..||+.
T Consensus 59 ~~v~~FL~~ 67 (122)
T PF07972_consen 59 KQVIRFLEN 67 (122)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 999999994
No 57
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=89.91 E-value=0.78 Score=40.91 Aligned_cols=110 Identities=17% Similarity=0.073 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhh-cCEEEEecccCCCCchHHHH
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE-ADGILLGFPTRFGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~-aD~ivigsP~y~~~~~~~~k 79 (192)
.+||-+.+|+.+++.+..+ |..+.+.++.++.+ .++.+ =..+++.|....|.+|..+.
T Consensus 57 qtG~a~~~A~~~a~~~~~~-g~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~st~geGe~p~na~ 115 (587)
T COG0369 57 QTGNAEGLAEELAKELEAA-GLQVLVASLDDYKP--------------------KDIAEERLLLFVVSTQGEGEPPDNAV 115 (587)
T ss_pred CCccHHHHHHHHHHHHHhc-CCceeecchhhcCh--------------------hhHHhhhceEEEEccccCCCCCCchH
Confidence 3799999999999999984 89999999988633 33332 34566666667899999999
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
.|++-+.... ...|.+-..++++.+..+.......-..+.+.+..+|...+-
T Consensus 116 ~f~~~l~~~~-a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~ 167 (587)
T COG0369 116 AFHEFLKGKK-APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLF 167 (587)
T ss_pred HHHHHhcccc-cccccccchhhhcCCccchhhhhccchhhHHHHHhcCccccc
Confidence 9999886321 245777888888876655432222334566666777765543
No 58
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=88.19 E-value=1.5 Score=29.69 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
+|..+++.+.+.+++ .|.++++.-.... ...+.+.++|.|+++ ||++..++
T Consensus 12 SSs~la~km~~~a~~-~gi~~~i~a~~~~-------------------e~~~~~~~~Dvill~---------PQv~~~~~ 62 (99)
T cd05565 12 TSGLLANALNKGAKE-RGVPLEAAAGAYG-------------------SHYDMIPDYDLVILA---------PQMASYYD 62 (99)
T ss_pred CHHHHHHHHHHHHHH-CCCcEEEEEeeHH-------------------HHHHhccCCCEEEEc---------ChHHHHHH
Confidence 467788999999999 5988876554421 013567889977765 45666677
Q ss_pred HhccccccccCCCCcEEEEEe
Q 029479 84 ATGGLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~~ 104 (192)
.+... ..-.|+|+.++-.
T Consensus 63 ~i~~~---~~~~~ipv~~I~~ 80 (99)
T cd05565 63 ELKKD---TDRLGIKLVTTTG 80 (99)
T ss_pred HHHHH---hhhcCCCEEEeCH
Confidence 66421 1234778877764
No 59
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=87.47 E-value=7 Score=26.64 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
.|..|++.+.+..++ .|.++++-..... ...+...++|.|+++ |+++..++
T Consensus 15 sTSll~~km~~~~~~-~gi~~~V~A~~~~-------------------~~~~~~~~~DviLl~---------Pqi~~~~~ 65 (106)
T PRK10499 15 STSLLVSKMRAQAEK-YEVPVIIEAFPET-------------------LAGEKGQNADVVLLG---------PQIAYMLP 65 (106)
T ss_pred cHHHHHHHHHHHHHH-CCCCEEEEEeecc-------------------hhhccccCCCEEEEC---------HHHHHHHH
Confidence 366778788888877 5887765443221 012346688988765 78888888
Q ss_pred HhccccccccCCCCcEEEEEe--cCCCCCCcchHHHHHHHHHHHc
Q 029479 84 ATGGLWRSQQLAGKPAGIFYS--TGSQGGGQETTPLTAITQLVHH 126 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~~--~g~~~g~~~~~~~~~~~~l~~~ 126 (192)
.+. ....++|+.++.. ||...| +..+......+..+
T Consensus 66 ~i~-----~~~~~~pV~~I~~~~Yg~~dg--~~vl~~a~~~~~~~ 103 (106)
T PRK10499 66 EIQ-----RLLPNKPVEVIDSLLYGKVDG--LGVLKAAVAAIKKA 103 (106)
T ss_pred HHH-----hhcCCCCEEEEChHhhhcCCH--HHHHHHHHHHHHHh
Confidence 774 2344578888776 554432 33444444444443
No 60
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=86.52 E-value=5 Score=27.18 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
+|..|+..+.+.+++ .|.++++--.++.. ..+.+.++|.+++| ||++-.++
T Consensus 13 STSlLV~Km~~aA~~-kg~~~~I~A~s~~e-------------------~~~~~~~~DvvLlG---------PQv~y~~~ 63 (102)
T COG1440 13 STSLLVTKMKKAAES-KGKDVTIEAYSETE-------------------LSEYIDNADVVLLG---------PQVRYMLK 63 (102)
T ss_pred cHHHHHHHHHHHHHh-CCCceEEEEechhH-------------------HHHhhhcCCEEEEC---------hHHHHHHH
Confidence 588899999999998 58888776665431 13667899999998 67777777
Q ss_pred HhccccccccCCCCcEEEEEe--cCCCCC
Q 029479 84 ATGGLWRSQQLAGKPAGIFYS--TGSQGG 110 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~~--~g~~~g 110 (192)
.+... ..-.|+|+.++-+ ||-..|
T Consensus 64 ~~~~~---~~~~giPV~vI~~~dYG~mnG 89 (102)
T COG1440 64 QLKEA---AEEKGIPVEVIDMLDYGMMNG 89 (102)
T ss_pred HHHHH---hcccCCCeEEeCHHHccCcCc
Confidence 76421 2346679999887 555543
No 61
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=86.25 E-value=2.8 Score=29.34 Aligned_cols=50 Identities=28% Similarity=0.353 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
||...++++.+.+.+ .|+++++=-=... +..+ .+.++|..||+|||++-+
T Consensus 16 HTyMAAeaLe~~A~~-~g~~IKVETqGs~---------------G~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 16 HTYMAAEALEKAAKK-LGVEIKVETQGAV---------------GIENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEcCCcc---------------cccCcCCHHHHHhCCEEEEEecc
Confidence 788888999999988 4887764221111 0111 247999999999999754
No 62
>PRK11538 ribosome-associated protein; Provisional
Probab=80.67 E-value=4.9 Score=27.47 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
+++.+++.+++.+.+..|.++.++|+.+. -.-+|.+||+|-.= ..++++..+
T Consensus 2 ~~~~~~~~i~~~l~dkKa~DI~vlDv~~~------------------------~~~~Dy~VIatg~S----~rh~~aia~ 53 (105)
T PRK11538 2 QGKALQDFVIDKIDDLKGQDIIALDVQGK------------------------SSITDCMIICTGTS----SRHVMSIAD 53 (105)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEeCC----HHHHHHHHH
Confidence 35678999999998866789999999863 22568999998553 455555555
Q ss_pred Hh
Q 029479 84 AT 85 (192)
Q Consensus 84 ~~ 85 (192)
.+
T Consensus 54 ~v 55 (105)
T PRK11538 54 HV 55 (105)
T ss_pred HH
Confidence 54
No 63
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=79.55 E-value=12 Score=32.38 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
+|..++.|+.+.+.+.+. ...+.++++. +.+ .++-+--.+++..|.|.+..| +.-|
T Consensus 57 ~GtA~~~A~~~~e~~~sl-d~~~~llnl~-y~~--------------------~d~pen~~~~lv~~~~~~~~~--~d~~ 112 (601)
T KOG1160|consen 57 TGTAKKAAKSVHEKLKSL-DELPKLLNLD-YSD--------------------FDVPENALYFLVLPSYDIDPP--LDYF 112 (601)
T ss_pred cchHHHHHHHHHHHHHhc-ccchhhcCCC-CCc--------------------cCCCcceEEEEEecccCCCCc--HHHH
Confidence 688899999999999884 4456666665 321 223345567888888888877 4455
Q ss_pred HHHhcc----cc-ccccCCCCcEEEEEecCCCC
Q 029479 82 LDATGG----LW-RSQQLAGKPAGIFYSTGSQG 109 (192)
Q Consensus 82 ld~~~~----~~-~~~~l~gK~~~~~~~~g~~~ 109 (192)
+..+.. +. .+..|+|-++++|+.+....
T Consensus 113 ~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~ 145 (601)
T KOG1160|consen 113 LQWLEESANDFRVGSFPLRGLVYAVFGLGDSEY 145 (601)
T ss_pred HHHHHhhhhccccCCccccCceEEEEeccchhh
Confidence 555531 11 13457888899999865543
No 64
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=77.48 E-value=5.6 Score=30.22 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=22.6
Q ss_pred HHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 11 EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 11 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
.+++.+++ .|.++++++ . .+++.++|+|||.-+
T Consensus 15 ~~~~~l~~-~G~~~~~~~--~----------------------~~~~~~~d~iii~G~ 47 (200)
T PRK13143 15 SVSKALER-AGAEVVITS--D----------------------PEEILDADGIVLPGV 47 (200)
T ss_pred HHHHHHHH-CCCeEEEEC--C----------------------HHHHccCCEEEECCC
Confidence 44555666 388887764 1 256789999999774
No 65
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=77.36 E-value=11 Score=29.95 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=36.2
Q ss_pred hHH-hhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCC-CCCCc----chHHHHHHHHHHHcCC
Q 029479 55 NEL-AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS-QGGGQ----ETTPLTAITQLVHHGM 128 (192)
Q Consensus 55 ~~l-~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~-~~g~~----~~~~~~~~~~l~~~g~ 128 (192)
..| .++|++||+.|.--.+ ..-...||..- .+|-++.++..... ...+. ......+...|..+|+
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls--~~e~~~l~~yl-------~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi 262 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLS--EEELYALDQYL-------MNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGI 262 (271)
T ss_pred cccCCCCCEEEEECCCCCCC--HHHHHHHHHHH-------HcCCeEEEEECCcccccccccccccccccCHHHHHHHcCC
Confidence 456 8999999999986333 33333343331 13334444443321 10100 0012357777788998
Q ss_pred EEec
Q 029479 129 IFVP 132 (192)
Q Consensus 129 ~vv~ 132 (192)
.+-.
T Consensus 263 ~~~~ 266 (271)
T PF09822_consen 263 RINP 266 (271)
T ss_pred EeCC
Confidence 8754
No 66
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=75.79 E-value=32 Score=26.69 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEE-ecccCCCCch-HHHHHHHHHh
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPTRFGMMA-AQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivi-gsP~y~~~~~-~~~k~fld~~ 85 (192)
|-..+++.+++ .|.+|++-.+.+.. . ....+.|.++|+||+ +... ...++ .+.++|.+++
T Consensus 24 ~~~~~~~~L~~-~gf~V~~~~~~d~~--~--------------~~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~V 85 (215)
T cd03142 24 MHGTIAAALAE-YGFDVQTATLDEPE--H--------------GLTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRRV 85 (215)
T ss_pred HHHHHHHHHHh-cCcEEEEEeccCcc--c--------------cCCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHHH
Confidence 55677888888 58999866555421 0 012467999999998 3443 44555 5888888888
Q ss_pred c
Q 029479 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 86 ~ 86 (215)
T cd03142 86 L 86 (215)
T ss_pred H
Confidence 5
No 67
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=74.63 E-value=42 Score=26.86 Aligned_cols=109 Identities=12% Similarity=0.152 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHH---H
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL---D 83 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fl---d 83 (192)
.|...++..+.+ .|.+|.++|........ +...+....+ ...+.+.++|.||+..|.. ..++.++ +
T Consensus 6 ~mG~~mA~~L~~-~G~~V~v~dr~~~~~~~-l~~~g~~~~~----s~~~~~~~advVil~vp~~-----~~~~~v~~g~~ 74 (288)
T TIGR01692 6 NMGGPMAANLLK-AGHPVRVFDLFPDAVEE-AVAAGAQAAA----SPAEAAEGADRVITMLPAG-----QHVISVYSGDE 74 (288)
T ss_pred HhHHHHHHHHHh-CCCeEEEEeCCHHHHHH-HHHcCCeecC----CHHHHHhcCCEEEEeCCCh-----HHHHHHHcCcc
Confidence 356677788877 48899888865321111 1111110011 1135678999999999973 3455555 3
Q ss_pred HhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 84 ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
.+. ....+|+.+ +-++ +- ...+...+.+.+...|..+++.++.
T Consensus 75 ~l~----~~~~~g~~v-id~s-t~----~p~~~~~~~~~~~~~g~~~vdaPv~ 117 (288)
T TIGR01692 75 GIL----PKVAKGSLL-IDCS-TI----DPDSARKLAELAAAHGAVFMDAPVS 117 (288)
T ss_pred hHh----hcCCCCCEE-EECC-CC----CHHHHHHHHHHHHHcCCcEEECCCC
Confidence 332 111233433 2222 11 1234557777777889988886554
No 68
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=73.47 E-value=16 Score=27.39 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=26.2
Q ss_pred HHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEE-Eeccc
Q 029479 12 IQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGIL-LGFPT 69 (192)
Q Consensus 12 i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~iv-igsP~ 69 (192)
+.+.+++ .|.++++++..+. ..+++.++|+|| .|.|-
T Consensus 17 i~~~l~~-~g~~~~v~~~~~~--------------------~~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 17 LVDLIRK-LGVPMQVVNVEDL--------------------DLDEVENFSHILISPGPD 54 (190)
T ss_pred HHHHHHH-cCCcEEEEECCcc--------------------ChhHhccCCEEEECCCCC
Confidence 5666777 4889998887542 136678899999 55774
No 69
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=73.25 E-value=15 Score=30.35 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k~ 80 (192)
+|++-..+..+++.+++ .|.+++++|+....|-+. +...+.+.+++.||+.-=-+ .|++.+++..
T Consensus 209 ~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pld~-------------~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~ 274 (327)
T PRK09212 209 FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPLDT-------------ETIIESVKKTNRLVVVEEGWPFAGVGAEIAA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCCCH-------------HHHHHHHHhCCeEEEEcCCCCCCCHHHHHHH
Confidence 68899999999999988 599999999988643110 01246678888888766555 5888899988
Q ss_pred HHHHh
Q 029479 81 FLDAT 85 (192)
Q Consensus 81 fld~~ 85 (192)
++..-
T Consensus 275 ~l~~~ 279 (327)
T PRK09212 275 LIMKE 279 (327)
T ss_pred HHHHh
Confidence 88653
No 70
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=73.11 E-value=17 Score=23.73 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
||...++.+.+.+++ .|.++.+ +..... ...+ .+.+++.+||.||+..-+
T Consensus 12 ht~lAae~L~~aA~~-~G~~i~V-E~qg~~--------------g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 12 HTFMAAEALEKAAKK-RGWEVKV-ETQGSV--------------GAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------CccCCCCHHHHHhCCEEEEeccC
Confidence 677777888888888 4877643 222110 0011 235899999999999765
No 71
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=72.19 E-value=6.2 Score=28.57 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=33.2
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHH
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~ 84 (192)
+.+.+.++++ |++++.+++.+....+. .+.|.+||+|.|+ |+-+..+..++..
T Consensus 3 ~~~~~~f~~~-g~~v~~l~~~~~~~~~~----------------~~~i~~ad~I~~~-----GG~~~~l~~~l~~ 55 (154)
T PF03575_consen 3 EKFRKAFRKL-GFEVDQLDLSDRNDADI----------------LEAIREADAIFLG-----GGDTFRLLRQLKE 55 (154)
T ss_dssp HHHHHHHHHC-T-EEEECCCTSCGHHHH----------------HHHHHHSSEEEE-------S-HHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEEEEeccCCChHHH----------------HHHHHhCCEEEEC-----CCCHHHHHHHHHh
Confidence 5667788884 99988888877422222 4889999999985 4444444444433
No 72
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=71.14 E-value=7.2 Score=26.22 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
|++.+++.+.+..|.++.++|+.+. -..+|-+||+|..= +.+++...+.+
T Consensus 1 ~~~~i~~~l~~~k~~dI~v~dv~~~------------------------~~~~dy~II~T~~S----~rh~~aia~~v 50 (100)
T PF02410_consen 1 MLEEIVEALEDKKAEDIVVLDVREK------------------------SSWADYFIIATGRS----ERHVRAIADEV 50 (100)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEGCTT------------------------BSS-SEEEEEEESS----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEcCC----HHHHHHHHHHH
Confidence 5778888887755779999999862 25679999999864 34444444444
No 73
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=69.67 E-value=30 Score=26.46 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 6 EKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 6 ~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
....+.+++.+++..|++|++.+=.+. ...+.|.++|+||+-+-.-..--..+.+.|.+.+
T Consensus 18 ~~~~~~l~~ll~~~~~~~v~~~~~~~~-------------------~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v 78 (217)
T PF06283_consen 18 PAAKKALAQLLEESEGFEVTVTEDPDD-------------------LTPENLKGYDVVVFYNTGGDELTDEQRAALRDYV 78 (217)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSGGC-------------------TSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEEeCccc-------------------CChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 356667777777325777765553221 1246799999999987661112446777777776
Q ss_pred ccccccccCCCCcEEEEE
Q 029479 86 GGLWRSQQLAGKPAGIFY 103 (192)
Q Consensus 86 ~~~~~~~~l~gK~~~~~~ 103 (192)
. +|+....+=
T Consensus 79 ~--------~Ggglv~lH 88 (217)
T PF06283_consen 79 E--------NGGGLVGLH 88 (217)
T ss_dssp H--------TT-EEEEEG
T ss_pred H--------cCCCEEEEc
Confidence 3 665554443
No 74
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=64.91 E-value=23 Score=22.67 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHH-HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC
Q 029479 5 VEKLA-EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 70 (192)
Q Consensus 5 T~~la-~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y 70 (192)
|..|+ +.+.+.+++ .|++++....... .......++|.|+++..+=
T Consensus 12 TS~~~~~~i~~~~~~-~gi~~~~~~~~~~-------------------~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 12 TSLMVANKIKKALKE-LGIEVEVSAGSIL-------------------EVEEIADDADLILLTPQIA 58 (90)
T ss_dssp HHHHHHHHHHHHHHH-TTECEEEEEEETT-------------------THHHHHTT-SEEEEEESSG
T ss_pred HHHHHHHHHHHHHHh-ccCceEEEEeccc-------------------ccccccCCCcEEEEcCccc
Confidence 44455 999999999 5888777665521 0123455699998887663
No 75
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=64.37 E-value=31 Score=22.88 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
+|..+++.+.+.+++ .|.++++---.... ... ...+++.+||.||+.+-+
T Consensus 13 ~s~laa~~L~~aa~~-~g~~~~ve~~~~~g---------------~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 13 HTYMAAEALEKAAKK-LGWEIKVETQGSLG---------------IENELTAEDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEEecCcC---------------ccCcCCHHHHhhCCEEEEecCC
Confidence 466677888888888 58876543222110 001 124889999999998765
No 76
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=64.29 E-value=78 Score=25.84 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=56.4
Q ss_pred ChhHHhhcCEEEEecccCCCCc-hHHHHHHHHHhccccccccCCCCcEEEEEe-cCCCCCCcchHHHHHHHHHHHcCCEE
Q 029479 53 TPNELAEADGILLGFPTRFGMM-AAQFKAFLDATGGLWRSQQLAGKPAGIFYS-TGSQGGGQETTPLTAITQLVHHGMIF 130 (192)
Q Consensus 53 ~~~~l~~aD~ivigsP~y~~~~-~~~~k~fld~~~~~~~~~~l~gK~~~~~~~-~g~~~g~~~~~~~~~~~~l~~~g~~v 130 (192)
+.+..+++|.+|+-+| +|.. +..+|+|++.+. . .++++. +.-+. . .+...|...|-.-
T Consensus 135 D~EAvk~aei~I~ftP--fG~~t~~Iikki~~~ip--------E---gAII~~tCTIpt----~---~ly~~le~l~R~D 194 (342)
T PRK00961 135 DREAVADADIVITWLP--KGGMQPDIIEKFADDIK--------E---GAIVTHACTIPT----T---KFAKIFKDLGRDD 194 (342)
T ss_pred cHHHhcCCCEEEEecC--CCCCchHHHHHHHhhCC--------C---CCEEeccccCCH----H---HHHHHHHHhCccc
Confidence 4688999999999999 4664 688999999884 2 234443 22211 1 3444444433222
Q ss_pred ec-CCccCCCCCccchhcccCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 029479 131 VP-IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 183 (192)
Q Consensus 131 v~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~e~~~~lg~~la~ 183 (192)
++ ..++.++ .++.. |... .+...-++|+++++.+|++....
T Consensus 195 vgIsS~HPaa--------VPgt~-Gq~~---i~egyAtEEqI~klveL~~sa~k 236 (342)
T PRK00961 195 LNVTSYHPGA--------VPEMK-GQVY---IAEGYADEEAVEKLYEIGKKARG 236 (342)
T ss_pred CCeeccCCCC--------CCCCC-Ccee---cccccCCHHHHHHHHHHHHHhCC
Confidence 22 1232211 01111 2111 23456789999999999987643
No 77
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=63.25 E-value=10 Score=27.47 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCC----CCCCCCC-----CC-hhHHhhcCEEEEecccCCCCchHHH
Q 029479 9 AEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAG----PKSDVPT-----IT-PNELAEADGILLGFPTRFGMMAAQF 78 (192)
Q Consensus 9 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~----~~~d~~~-----~~-~~~l~~aD~ivigsP~y~~~~~~~~ 78 (192)
..+++.-+.. .|.+|.++.-.+. .-+.+...+.. +...++. .+ .+.+.++|.||++.|.+. +
T Consensus 11 G~AlA~~la~-~g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~~------~ 82 (157)
T PF01210_consen 11 GTALAALLAD-NGHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQA------H 82 (157)
T ss_dssp HHHHHHHHHH-CTEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GGG------H
T ss_pred HHHHHHHHHH-cCCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHHH------H
Confidence 4466666777 5888888876541 11122222211 1111111 12 356899999999999854 5
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCC
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGS 107 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~ 107 (192)
+.+++++. ..++.....++.+-|-
T Consensus 83 ~~~~~~l~-----~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 83 REVLEQLA-----PYLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHHHHT-----TTSHTT-EEEETS-SE
T ss_pred HHHHHHHh-----hccCCCCEEEEecCCc
Confidence 77888885 2344444445545443
No 78
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.82 E-value=9.9 Score=25.33 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHH
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~ 84 (192)
|..+++.+.+.+++ .|.++++....-. + ..+.+.++|.|+++. +++..++.
T Consensus 16 SS~l~~k~~~~~~~-~gi~~~v~a~~~~---~----------------~~~~~~~~Dvill~p---------qi~~~~~~ 66 (95)
T TIGR00853 16 TSLLVNKMNKAAEE-YGVPVKIAAGSYG---A----------------AGEKLDDADVVLLAP---------QVAYMLPD 66 (95)
T ss_pred HHHHHHHHHHHHHH-CCCcEEEEEecHH---H----------------HHhhcCCCCEEEECc---------hHHHHHHH
Confidence 55788999999998 5887765544321 1 124567889777653 34444444
Q ss_pred hccccccccCCCCcEEEEEe
Q 029479 85 TGGLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~~ 104 (192)
+... ..-.|.|+.++..
T Consensus 67 i~~~---~~~~~ipv~~I~~ 83 (95)
T TIGR00853 67 LKKE---TDKKGIPVEVING 83 (95)
T ss_pred HHHH---hhhcCCCEEEeCh
Confidence 4310 0123457776654
No 79
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=62.80 E-value=75 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.2
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.+.+.++|.|||++|+ ..+..++..+.
T Consensus 40 ~~~~~~~DlvvlavP~------~~~~~~l~~~~ 66 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV------SAIEDVLEEIA 66 (258)
T ss_dssp HHHGGCCSEEEE-S-H------HHHHHHHHHHH
T ss_pred HhHhcCCCEEEEcCCH------HHHHHHHHHhh
Confidence 5789999999999998 66788888875
No 80
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=62.78 E-value=16 Score=24.22 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=17.6
Q ss_pred HHHH-HHHHHHHhhhcCCceEEEEE
Q 029479 5 VEKL-AEEIQKGAASVEGVEAKLWQ 28 (192)
Q Consensus 5 T~~l-a~~i~~~~~~~~g~~v~~~~ 28 (192)
|..| +..+.+.+++ .|.++++..
T Consensus 15 TS~m~~~ki~~~l~~-~gi~~~v~~ 38 (94)
T PRK10310 15 TSTMAAEEIKELCQS-HNIPVELIQ 38 (94)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4444 7899999998 598877666
No 81
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=61.63 E-value=33 Score=28.36 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k~ 80 (192)
+|++-..|..+++.|++ .|++++++|+....|-+. +...+.+.+...||+.---| .|++-..+-.
T Consensus 209 ~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPlD~-------------~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~ 274 (327)
T CHL00144 209 YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPLDL-------------GTISKSVKKTHKVLIVEECMKTGGIGAELIA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCCCH-------------HHHHHHHHhhCcEEEEECCCCCCCHHHHHHH
Confidence 68888889999999988 599999999987643110 01135667777777766555 5778777777
Q ss_pred HHHH
Q 029479 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 275 ~l~e 278 (327)
T CHL00144 275 QINE 278 (327)
T ss_pred HHHH
Confidence 7754
No 82
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=61.24 E-value=13 Score=24.73 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
.|..|++.+.+.+++ .|.++++....- .+ ..+...++|.|++ + |+++..++
T Consensus 11 sTS~~~~ki~~~~~~-~~~~~~v~~~~~---~~----------------~~~~~~~~Diil~-~--------Pqv~~~~~ 61 (96)
T cd05564 11 STSILVKKMKKAAEK-RGIDAEIEAVPE---SE----------------LEEYIDDADVVLL-G--------PQVRYMLD 61 (96)
T ss_pred hHHHHHHHHHHHHHH-CCCceEEEEecH---HH----------------HHHhcCCCCEEEE-C--------hhHHHHHH
Confidence 356789999999998 588765544331 10 0234678886554 3 55666666
Q ss_pred HhccccccccCCCCcEEEEEe
Q 029479 84 ATGGLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~~ 104 (192)
++... ....++++.++-.
T Consensus 62 ~i~~~---~~~~~~pv~~I~~ 79 (96)
T cd05564 62 EVKKK---AAEYGIPVAVIDM 79 (96)
T ss_pred HHHHH---hccCCCcEEEcCh
Confidence 66310 1235778877765
No 83
>PRK06545 prephenate dehydrogenase; Validated
Probab=60.94 E-value=64 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|...++.++.+ .|.++.+++.... .............++......+.+.++|.||++.|.. .+..++..+.
T Consensus 10 liG~siA~~L~~-~G~~v~i~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~------~~~~vl~~l~ 81 (359)
T PRK06545 10 LIGGSLALAIKA-AGPDVFIIGYDPS-AAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD------ATAALLAELA 81 (359)
T ss_pred HHHHHHHHHHHh-cCCCeEEEEeCCC-HHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH------HHHHHHHHHh
Confidence 366788888888 4888888886542 1111111110001111111124578999999999984 4566666663
No 84
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=60.23 E-value=37 Score=23.46 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
+|...++.+.+.+++ .|.++.+ +..... ...+ .+.+++..||.||+....
T Consensus 17 ht~lAAeaL~kAA~~-~G~~i~V-E~qg~~--------------g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 17 HTYMAAERLEKLCQL-EKWGVKI-ETQGAL--------------GTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------CcCCCCCHHHHHhCCEEEEEecC
Confidence 677777888888888 5877643 222210 0111 235899999999999765
No 85
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.43 E-value=62 Score=23.08 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=51.6
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhcccc
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 89 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~ 89 (192)
+.++..+++ .|.+ ++++.-..+.+.+ .+...+.|.=+++-....+.--..|+.+++++.
T Consensus 19 ~iv~~~l~~-~Gfe--Vi~LG~~v~~e~~---------------v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~--- 77 (134)
T TIGR01501 19 KILDHAFTN-AGFN--VVNLGVLSPQEEF---------------IKAAIETKADAILVSSLYGHGEIDCKGLRQKCD--- 77 (134)
T ss_pred HHHHHHHHH-CCCE--EEECCCCCCHHHH---------------HHHHHHcCCCEEEEecccccCHHHHHHHHHHHH---
Confidence 345566666 4755 5677654332221 355666566556656666777788999999986
Q ss_pred ccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCE
Q 029479 90 RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 129 (192)
Q Consensus 90 ~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~ 129 (192)
...+.+++ +..+|...-. ..........|...|+.
T Consensus 78 -~~gl~~~~---vivGG~~vi~-~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 78 -EAGLEGIL---LYVGGNLVVG-KQDFPDVEKRFKEMGFD 112 (134)
T ss_pred -HCCCCCCE---EEecCCcCcC-hhhhHHHHHHHHHcCCC
Confidence 34465554 2233321101 11122345567777854
No 86
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=59.16 E-value=15 Score=24.70 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 9 AEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 9 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
++.+++.+.+..+.++.++|+.+. -.-+|-+||+|-. -..++++..+.+.
T Consensus 2 ~~~i~~~l~~kka~dI~vldv~~~------------------------~~~~dy~VI~Tg~----S~rh~~aia~~v~ 51 (99)
T TIGR00090 2 LELIVEALDDKKAEDIVVLDVRGK------------------------SSIADYFVIASGT----SSRHVKAIADNVE 51 (99)
T ss_pred HHHHHHHHHHcCCCCEEEEECCCC------------------------CcccCEEEEEEeC----CHHHHHHHHHHHH
Confidence 567777787655779999999863 1356889999854 4456666666554
No 87
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=58.40 E-value=39 Score=26.47 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
..+...++.+++ .|.++..+.+-+..+...+. ....++.++|.|||-||. .++.|++++.
T Consensus 11 ~~~~~~~~~l~~-~G~~~~~~P~i~~~~~~~l~------------~~l~~l~~~d~vvfTS~~-------av~~~~~~l~ 70 (248)
T COG1587 11 EQAEELAALLRK-AGAEPLELPLIEIEPLPDLE------------VALEDLDSADWVVFTSPN-------AVRFFFEALK 70 (248)
T ss_pred hhhHHHHHHHHh-CCCcceeecceeeecchhHH------------HHHhccccCCEEEEECHH-------HHHHHHHHHH
Confidence 456777788888 48877666665543210010 124566669999999985 6788888875
Q ss_pred cccccccCCCCcEEEEEe
Q 029479 87 GLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 87 ~~~~~~~l~gK~~~~~~~ 104 (192)
.... ..+++++++++|-
T Consensus 71 ~~~~-~~~~~~~i~aVG~ 87 (248)
T COG1587 71 EQGL-DALKNKKIAAVGE 87 (248)
T ss_pred hhcc-cccccCeEEEEcH
Confidence 3221 1345677766654
No 88
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=58.00 E-value=41 Score=24.16 Aligned_cols=63 Identities=13% Similarity=-0.071 Sum_probs=39.3
Q ss_pred cCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecCCCCCCCCHHHHH
Q 029479 93 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELA 172 (192)
Q Consensus 93 ~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~e 172 (192)
.|+||++.+++--.+..|. .+..-++..|.+++-.. +.+| .++.- +..|.+...
T Consensus 2 ~l~gkKviiiGdRDGiPgp------Aie~c~~~~gaevvfs~-TeCF---------Vctaa----------gaMDLEnQ~ 55 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGP------AIEECVKTAGAEVVFSS-TECF---------VCTAA----------GAMDLENQQ 55 (150)
T ss_pred ccCCcEEEEEecCCCCCcH------HHHHHHHhcCceEEEEe-eeEE---------Eeccc----------ccccHHHHH
Confidence 4799999999886554432 56667778899888543 2211 11122 245667777
Q ss_pred HHHHHHHHH
Q 029479 173 QAFHQGKYF 181 (192)
Q Consensus 173 ~~~~lg~~l 181 (192)
+.+.+.++.
T Consensus 56 rvk~~aEk~ 64 (150)
T PF04723_consen 56 RVKDLAEKY 64 (150)
T ss_pred HHHHHHHhc
Confidence 777776654
No 89
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=57.88 E-value=81 Score=26.41 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k~ 80 (192)
+|++-..|..+++.|++ .|++++++|+....|-+. +...+.+.+.+.||+.-=-+ .|++-..+..
T Consensus 236 ~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPlD~-------------~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~ 301 (356)
T PLN02683 236 FSKMVGYALKAAEILAK-EGISAEVINLRSIRPLDR-------------DTINASVRKTNRLVTVEEGWPQHGVGAEICA 301 (356)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCccCH-------------HHHHHHHhhcCeEEEEeCCCcCCCHHHHHHH
Confidence 68888888888888887 599999999987643110 01135677787777766555 5778787777
Q ss_pred HHHH
Q 029479 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 302 ~l~e 305 (356)
T PLN02683 302 SVVE 305 (356)
T ss_pred HHHH
Confidence 7754
No 90
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=57.20 E-value=1e+02 Score=24.86 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH-hh---cCEEEEecccCCCCchHHHHHHH
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-AE---ADGILLGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-~~---aD~ivigsP~y~~~~~~~~k~fl 82 (192)
.|...++..+.+ .|.++.++|...... +.+....... ..+.+++ .+ +|.|++..|.. ..++.++
T Consensus 10 ~mG~~mA~~L~~-~g~~v~v~dr~~~~~-~~~~~~g~~~-----~~s~~~~~~~~~~advVi~~vp~~-----~~~~~v~ 77 (299)
T PRK12490 10 KMGGNMAERLRE-DGHEVVGYDVNQEAV-DVAGKLGITA-----RHSLEELVSKLEAPRTIWVMVPAG-----EVTESVI 77 (299)
T ss_pred HHHHHHHHHHHh-CCCEEEEEECCHHHH-HHHHHCCCee-----cCCHHHHHHhCCCCCEEEEEecCc-----hHHHHHH
Confidence 356677777777 488888887643111 1111111000 1123444 33 69999999964 3666666
Q ss_pred HHhccccccccC-CCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 83 DATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 83 d~~~~~~~~~~l-~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
+.+. ..+ +|+.+ +-++...+ .....+.+.+...|..+++-++.
T Consensus 78 ~~i~-----~~l~~g~iv-id~st~~~-----~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 78 KDLY-----PLLSPGDIV-VDGGNSRY-----KDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred HHHh-----ccCCCCCEE-EECCCCCc-----hhHHHHHHHHHHcCCeEEeCCCC
Confidence 6653 223 33322 32222221 23446777777889888876654
No 91
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=56.05 E-value=1.1e+02 Score=24.75 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|...++..+.+ .|.+|.++|..... .+.+.........+ +....+.+..+|.|++..|. ..+..+++.+.
T Consensus 10 ~mG~~la~~L~~-~g~~V~~~dr~~~~-~~~l~~~g~~~~~s-~~~~~~~~~~~dvIi~~vp~------~~~~~v~~~l~ 80 (298)
T TIGR00872 10 RMGANIVRRLAK-RGHDCVGYDHDQDA-VKAMKEDRTTGVAN-LRELSQRLSAPRVVWVMVPH------GIVDAVLEELA 80 (298)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHHH-HHHHHHcCCcccCC-HHHHHhhcCCCCEEEEEcCc------hHHHHHHHHHH
Confidence 366777888877 48899888765321 11111111111000 00001233568999999987 35666666654
Q ss_pred cccccccC-CCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 87 GLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 87 ~~~~~~~l-~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
. .+ +|+.+ + ..+... ......+...+...|..+++.++.
T Consensus 81 ~-----~l~~g~iv--i-d~st~~---~~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 81 P-----TLEKGDIV--I-DGGNSY---YKDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred h-----hCCCCCEE--E-ECCCCC---cccHHHHHHHHHhcCCeEEecCCC
Confidence 1 23 34432 2 222211 112334555677889888876654
No 92
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=55.85 E-value=34 Score=24.85 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCC-hhHHhhcCEEEEecccCCCCchHHHHHHHHH-
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTIT-PNELAEADGILLGFPTRFGMMAAQFKAFLDA- 84 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~aD~ivigsP~y~~~~~~~~k~fld~- 84 (192)
.|-..++..+.+ .|.+|.++|............ ... ...+ .+-+.++|.|++.-|. +.+++.+++.
T Consensus 11 ~mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~-g~~-----~~~s~~e~~~~~dvvi~~v~~-----~~~v~~v~~~~ 78 (163)
T PF03446_consen 11 NMGSAMARNLAK-AGYEVTVYDRSPEKAEALAEA-GAE-----VADSPAEAAEQADVVILCVPD-----DDAVEAVLFGE 78 (163)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHT-TEE-----EESSHHHHHHHBSEEEE-SSS-----HHHHHHHHHCT
T ss_pred HHHHHHHHHHHh-cCCeEEeeccchhhhhhhHHh-hhh-----hhhhhhhHhhcccceEeeccc-----chhhhhhhhhh
Confidence 366677777777 499999999653111111111 000 0012 3567788999998875 4678888887
Q ss_pred -hccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 85 -TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 85 -~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
+. ....+|+.+.-.++. .......+.+.+...|..+++-++.
T Consensus 79 ~i~----~~l~~g~iiid~sT~------~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 79 NIL----AGLRPGKIIIDMSTI------SPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp THG----GGS-TTEEEEE-SS--------HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHh----hccccceEEEecCCc------chhhhhhhhhhhhhccceeeeeeee
Confidence 43 122355555433332 1234567888888899999887654
No 93
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=54.87 E-value=29 Score=26.07 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
||+..+++. +++ .|+++++++.. +++.++|+|||..|
T Consensus 9 ~~~~~~~~~----l~~-~g~~v~v~~~~------------------------~~l~~~d~iiipG~ 45 (198)
T cd01748 9 GNLRSVANA----LER-LGAEVIITSDP------------------------EEILSADKLILPGV 45 (198)
T ss_pred ChHHHHHHH----HHH-CCCeEEEEcCh------------------------HHhccCCEEEECCC
Confidence 566655544 445 38888887721 45778999999776
No 94
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.75 E-value=34 Score=27.61 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCC-ChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI-TPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~-~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
.|-..++..+++ .|..+.+++....... ......-...++.... ....+.++|.||+++|+ ...-.+++++
T Consensus 13 liG~s~a~~l~~-~g~~v~i~g~d~~~~~-~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi------~~~~~~l~~l 84 (279)
T COG0287 13 LMGGSLARALKE-AGLVVRIIGRDRSAAT-LKAALELGVIDELTVAGLAEAAAEADLVIVAVPI------EATEEVLKEL 84 (279)
T ss_pred hHHHHHHHHHHH-cCCeEEEEeecCcHHH-HHHHhhcCcccccccchhhhhcccCCEEEEeccH------HHHHHHHHHh
Confidence 467889999999 5989988887763211 1100000011111111 14778889999999998 4455555555
Q ss_pred c
Q 029479 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 85 ~ 85 (279)
T COG0287 85 A 85 (279)
T ss_pred c
Confidence 3
No 95
>PRK07053 glutamine amidotransferase; Provisional
Probab=54.11 E-value=32 Score=26.89 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEE-ecccC
Q 029479 11 EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPTR 70 (192)
Q Consensus 11 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivi-gsP~y 70 (192)
.|.+.+++ .|.++++++..+.. . ...++.++|+||| |+|.-
T Consensus 18 ~i~~~L~~-~g~~~~v~~~~~~~---------------~---~~~~~~~~d~lii~Ggp~~ 59 (234)
T PRK07053 18 SFEQVLGA-RGYRVRYVDVGVDD---------------L---ETLDALEPDLLVVLGGPIG 59 (234)
T ss_pred HHHHHHHH-CCCeEEEEecCCCc---------------c---CCCCccCCCEEEECCCCCC
Confidence 35666777 48888888875311 1 0234667898777 77753
No 96
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=53.94 E-value=68 Score=24.23 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcCCceEEEEEcCCCCCH--HHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 9 AEEIQKGAASVEGVEAKLWQVPETLSE--DVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 9 a~~i~~~~~~~~g~~v~~~~l~~~~~~--~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
...+.+.+++ .|.++..+.+.+..+. .... .....+..+|.|||.||. .++.|++.+.
T Consensus 10 ~~~l~~~L~~-~G~~~~~~p~~~~~~~~~~~~~------------~~~~~~~~~~~iiftS~~-------av~~~~~~~~ 69 (239)
T cd06578 10 ADELAALLEA-LGAEVLELPLIEIEPLDDAELD------------AALADLDEYDWLIFTSPN-------AVEAFFEALE 69 (239)
T ss_pred hHHHHHHHHH-cCCcEEEeeeEEEecCChHHHH------------HHHHhcCCCCEEEEECHH-------HHHHHHHHHH
Confidence 4567778887 4888877776554211 0000 113456689999999994 5566666653
No 97
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=53.67 E-value=1.1e+02 Score=24.34 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|...++..+.+ .|.+|.++|.... ..+.+......... ...+.+.++|.||+..|. +..++..+..-.
T Consensus 9 ~mG~~iA~~l~~-~G~~V~~~dr~~~-~~~~~~~~g~~~~~----~~~~~~~~aDivi~~vp~-----~~~~~~v~~~~~ 77 (291)
T TIGR01505 9 IMGSPMSINLAK-AGYQLHVTTIGPE-VADELLAAGAVTAE----TARQVTEQADVIFTMVPD-----SPQVEEVAFGEN 77 (291)
T ss_pred HHHHHHHHHHHH-CCCeEEEEcCCHH-HHHHHHHCCCcccC----CHHHHHhcCCEEEEecCC-----HHHHHHHHcCcc
Confidence 356677777777 4889888876531 11111111110010 113568899999999996 355666542110
Q ss_pred cccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCc
Q 029479 87 GLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 87 ~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
.+. ....+++.+ ...+.. . ..+...+.+.+...|+.++..++
T Consensus 78 ~~~-~~~~~g~ii---vd~st~--~-~~~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 78 GII-EGAKPGKTL---VDMSSI--S-PIESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred hHh-hcCCCCCEE---EECCCC--C-HHHHHHHHHHHHHcCCCEEecCC
Confidence 000 011223322 222211 1 12344677777778888887554
No 98
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.97 E-value=1.2e+02 Score=24.49 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|...++..+.. .|.+|.+++-.... ...+.+.++|.||+..|. ..+..+++.+.
T Consensus 14 ~~G~~lA~~l~~-~G~~V~~~~r~~~~------------------~~~~~~~~advvi~~vp~------~~~~~v~~~l~ 68 (308)
T PRK14619 14 AWGSTLAGLASA-NGHRVRVWSRRSGL------------------SLAAVLADADVIVSAVSM------KGVRPVAEQVQ 68 (308)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCCCC------------------CHHHHHhcCCEEEEECCh------HHHHHHHHHHH
Confidence 366778888877 48999888865320 113557899999999994 35666666663
No 99
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=52.86 E-value=46 Score=23.86 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.7
Q ss_pred hhHHhhcCEEEEecccC
Q 029479 54 PNELAEADGILLGFPTR 70 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y 70 (192)
.+.+++||.||-+++.-
T Consensus 66 ~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 66 QSKVHDADVVVVGSPKP 82 (140)
T ss_pred HHHHhhCCEEEEecCCC
Confidence 46799999999999876
No 100
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=52.71 E-value=67 Score=21.43 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=35.0
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 108 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~ 108 (192)
++..+||.|||-|-+.-...-..+...+.++... .-+++++++.|++...
T Consensus 32 ~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~----~~~~~~ivv~GC~aq~ 81 (98)
T PF00919_consen 32 DDPEEADVIIINTCTVRESAEQKSRNRIRKLKKL----KKPGAKIVVTGCMAQR 81 (98)
T ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHh----cCCCCEEEEEeCcccc
Confidence 4558999999999998777777777777776421 1156677777776443
No 101
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=51.64 E-value=1.1e+02 Score=23.86 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR 70 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y 70 (192)
+.+...+.+ .|...+++++.+- ++|. .+++..+|++||.-.-|
T Consensus 28 nvfvsllg~-ege~wd~frV~~g---------------efP~--~~Dl~ky~gfvIsGS~~ 70 (245)
T KOG3179|consen 28 NVFVSLLGD-EGEQWDLFRVIDG---------------EFPQ--EEDLEKYDGFVISGSKH 70 (245)
T ss_pred HHHHHHhcc-cCceeEEEEEecC---------------CCCC--hhhhhhhceEEEeCCcc
Confidence 344555655 5778888888763 3443 48899999999987777
No 102
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=51.32 E-value=69 Score=26.39 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k~ 80 (192)
||..-..+-..++.+.+ .|+++|++||+.+.|-+.- ...+.+++--.+|+..=.+ .+++.+.+-+
T Consensus 208 yg~mv~~al~AAe~l~~-~Gis~EVIDLRTl~PlD~e-------------tIi~SvkKTgR~viV~Ea~~~~g~gaei~A 273 (324)
T COG0022 208 YGAMVHTALEAAEELEK-EGISAEVIDLRTLSPLDKE-------------TIIASVKKTGRLVIVHEAPKTGGIGAEIAA 273 (324)
T ss_pred echHHHHHHHHHHHHhh-cCCCeEEEeccccCccCHH-------------HHHHHHHhhCcEEEEEeccccCChHHHHHH
Confidence 45556666677777777 5999999999987542110 1135555555555555444 3444444433
No 103
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=50.87 E-value=1.3e+02 Score=24.07 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCC-hhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTIT-PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
|...++..+.+ .|.+|.++|...... +.+..... . ...+ .+.+.++|.||+..|.. ..++..+....
T Consensus 13 mG~~~a~~l~~-~g~~v~~~d~~~~~~-~~~~~~g~-~----~~~~~~e~~~~~d~vi~~vp~~-----~~~~~v~~~~~ 80 (296)
T PRK11559 13 MGKPMSKNLLK-AGYSLVVYDRNPEAV-AEVIAAGA-E----TASTAKAVAEQCDVIITMLPNS-----PHVKEVALGEN 80 (296)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHH-HHHHHCCC-e----ecCCHHHHHhcCCEEEEeCCCH-----HHHHHHHcCcc
Confidence 45566666666 488888777543111 11111110 0 0012 24568999999999973 45555542110
Q ss_pred cccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 87 GLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 87 ~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
.+. ....+|+.+ ...+.. ...+...+...+...|+.++..++.
T Consensus 81 ~~~-~~~~~g~ii---id~st~---~~~~~~~l~~~~~~~g~~~~d~pv~ 123 (296)
T PRK11559 81 GII-EGAKPGTVV---IDMSSI---APLASREIAAALKAKGIEMLDAPVS 123 (296)
T ss_pred hHh-hcCCCCcEE---EECCCC---CHHHHHHHHHHHHHcCCcEEEcCCC
Confidence 000 111233333 222211 1233456666777778877766543
No 104
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=50.28 E-value=64 Score=25.26 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC--CChhHHhhcCEEEEecccCCCCchHHHHHHHHHhcc
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT--ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~ 87 (192)
+.+.+.+.+ .|++|+.+.+.+..+.. .+ +. .........|+|+|.||. .+++|++.+..
T Consensus 136 ~~l~~~L~~-~G~~v~~~~~Y~~~~~~----------~~-~~~~~~~~~~~~~d~v~ftS~~-------~v~~~~~~~~~ 196 (248)
T COG1587 136 EVLEEKLEE-RGAEVREVEVYRTEPPP----------LD-EATLIELLKLGEVDAVVFTSSS-------AVRALLALAPE 196 (248)
T ss_pred HHHHHHHHh-CCCEEEEEeeeeecCCC----------cc-HHHHHHHHHhCCCCEEEEeCHH-------HHHHHHHHccc
Confidence 456677777 48888777776642210 00 00 013678899999999974 78899988753
Q ss_pred ccccccCCCCcEEEEE
Q 029479 88 LWRSQQLAGKPAGIFY 103 (192)
Q Consensus 88 ~~~~~~l~gK~~~~~~ 103 (192)
.... .+..++++.++
T Consensus 197 ~~~~-~~~~~~v~~IG 211 (248)
T COG1587 197 SGIE-FLERKRVASIG 211 (248)
T ss_pred cchh-HhhCceEEEec
Confidence 2111 23345554443
No 105
>PRK08818 prephenate dehydrogenase; Provisional
Probab=50.28 E-value=37 Score=28.63 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|-..++..+++..+.+|.-+|..+.. . ....+.+.+||.|||++|+ ..+..++..+.
T Consensus 15 liGgslA~alk~~~~~~V~g~D~~d~~----~------------~~~~~~v~~aDlVilavPv------~~~~~~l~~l~ 72 (370)
T PRK08818 15 AYGRWLARFLRTRMQLEVIGHDPADPG----S------------LDPATLLQRADVLIFSAPI------RHTAALIEEYV 72 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCccc----c------------CCHHHHhcCCCEEEEeCCH------HHHHHHHHHHh
Confidence 355667777765226677667654310 0 0113568899999999998 55566666553
No 106
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=49.64 E-value=63 Score=25.52 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=33.9
Q ss_pred EEEEecccCC--CCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCC
Q 029479 62 GILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 128 (192)
Q Consensus 62 ~ivigsP~y~--~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~ 128 (192)
+||+|+-.|. +.+++.++.=++.-..++ -.||...++.|+|....+ ..-...|.+.|..+|.
T Consensus 48 ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LY----k~gk~~~ilvSGg~~~~~-~~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 48 GVVLGTAKYYRTGVINQYYRYRIQGAINAY----NSGKVNYLLLSGDNALQS-YNEPMTMRKDLIAAGV 111 (239)
T ss_pred EEEcCCcccCCCCCcCHHHHHHHHHHHHHH----HhCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHcCC
Confidence 6778987774 556666665555543222 245665567776653222 1223345555555553
No 107
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=49.28 E-value=72 Score=27.83 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k~ 80 (192)
+|+.-..|..+++.|++ .|++++++|+....|-+. ....+.+.+...||+.-=-| .+++-..+-.
T Consensus 348 ~G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPlD~-------------~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~ 413 (464)
T PRK11892 348 FSIGMTYALKAAEELAK-EGIDAEVIDLRTIRPMDT-------------ETIVESVKKTNRLVTVEEGWPQSGVGAEIAA 413 (464)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcCCH-------------HHHHHHHHhcCeEEEEeCCCcCCcHHHHHHH
Confidence 68888888888888987 599999999987643110 01246677777777666555 5777777777
Q ss_pred HHHH
Q 029479 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 414 ~l~e 417 (464)
T PRK11892 414 RVME 417 (464)
T ss_pred HHHH
Confidence 6644
No 108
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=48.74 E-value=25 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCC
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPET 32 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~ 32 (192)
+|++-..|..+++.+++ .|.+++++++.-.
T Consensus 17 ~G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 17 YGSMVEEALEAAEELEE-EGIKAGVIDLRTI 46 (124)
T ss_dssp ETTHHHHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred ehHHHHHHHHHHHHHHH-cCCceeEEeeEEE
Confidence 68888999999999998 6999999999765
No 109
>PRK08250 glutamine amidotransferase; Provisional
Probab=48.02 E-value=95 Score=24.21 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEE-ecccC
Q 029479 13 QKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPTR 70 (192)
Q Consensus 13 ~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivi-gsP~y 70 (192)
..-+++ .|.+++++++..-. ....++.++|+||| |+|-.
T Consensus 18 ~~~~~~-~g~~~~~~~~~~g~------------------~~p~~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 18 LKWAEN-RGYDISYSRVYAGE------------------ALPENADGFDLLIVMGGPQS 57 (235)
T ss_pred HHHHHH-CCCeEEEEEccCCC------------------CCCCCccccCEEEECCCCCC
Confidence 344455 48888887765311 01235778999877 88753
No 110
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=47.54 E-value=1.1e+02 Score=22.51 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEE-eccc
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPT 69 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivi-gsP~ 69 (192)
..+.+.+++ .|+++++++..... ....++.++|+||+ |.|-
T Consensus 12 ~~~~~~l~~-~G~~~~~~~~~~~~------------------~~~~~~~~~dgvil~gG~~ 53 (184)
T cd01743 12 YNLVQYLRE-LGAEVVVVRNDEIT------------------LEELELLNPDAIVISPGPG 53 (184)
T ss_pred HHHHHHHHH-cCCceEEEeCCCCC------------------HHHHhhcCCCEEEECCCCC
Confidence 345566666 48999999886421 01235789999877 6663
No 111
>PRK09065 glutamine amidotransferase; Provisional
Probab=47.53 E-value=80 Score=24.66 Aligned_cols=56 Identities=7% Similarity=-0.032 Sum_probs=31.2
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEe-cccCCCC-ch--HHHHHHHHHh
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG-FPTRFGM-MA--AQFKAFLDAT 85 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivig-sP~y~~~-~~--~~~k~fld~~ 85 (192)
+.+...+.. .|.+++++++.+.. ...++.++|+|||. +|--.+. .+ ..++.|+..+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~~~~~~-------------------~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~ 84 (237)
T PRK09065 25 HWIRVALGL-AEQPVVVVRVFAGE-------------------PLPAPDDFAGVIITGSWAMVTDRLDWSERTADWLRQA 84 (237)
T ss_pred HHHHHHhcc-CCceEEEEeccCCC-------------------CCCChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHH
Confidence 344445555 47888888876521 12356778888774 5532222 22 3456666654
No 112
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=47.08 E-value=70 Score=24.36 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=28.8
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.+.+..+|.|++.+|.....-....++++|...
T Consensus 59 ~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~ 91 (233)
T PF05368_consen 59 VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAK 91 (233)
T ss_dssp HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCceEEeecCcchhhhhhhhhhHHHhhh
Confidence 577999999999999988777788899999874
No 113
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.52 E-value=80 Score=26.43 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccC-CCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y-~~~~~~~~k~ 80 (192)
+|++-..+..+++.+++ .|++++++++..+.|-+. +...+.+..++.||+.-=.+ .|++-..+..
T Consensus 241 ~Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~Pld~-------------e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~ 306 (355)
T PTZ00182 241 YGSQVHVALKAAEELAK-EGISCEVIDLRSLRPWDR-------------ETIVKSVKKTGRCVIVHEAPPTCGIGAEIAA 306 (355)
T ss_pred eCHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCH-------------HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH
Confidence 68888888888888887 599999999987643110 01135566777766643333 5777777776
Q ss_pred HHHH
Q 029479 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 307 ~l~e 310 (355)
T PTZ00182 307 QIME 310 (355)
T ss_pred HHHH
Confidence 6644
No 114
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=46.33 E-value=79 Score=21.98 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
++..+++.+++.+.+..+.++..+|+++. -.-+|-+||+|-.-. -++++..|
T Consensus 2 ~~~~l~~~i~~alddkKAeDIv~lDv~~~------------------------s~~tDyfVIatg~s~----rhv~Aiad 53 (115)
T COG0799 2 SMEELLEVIVEALDDKKAEDIVVLDVSGK------------------------SSLTDYFVIATGNSS----RHVKAIAD 53 (115)
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEccCC------------------------cccccEEEEEEeCch----HHHHHHHH
Confidence 35678999999998765779999999863 235678888875544 45555555
Q ss_pred Hhc
Q 029479 84 ATG 86 (192)
Q Consensus 84 ~~~ 86 (192)
.+.
T Consensus 54 ~i~ 56 (115)
T COG0799 54 NVK 56 (115)
T ss_pred HHH
Confidence 553
No 115
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=46.08 E-value=86 Score=24.98 Aligned_cols=51 Identities=8% Similarity=-0.036 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCC-CCChhHHhhcCEEEEeccc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVP-TITPNELAEADGILLGFPT 69 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~-~~~~~~l~~aD~ivigsP~ 69 (192)
.-++.+++.+++ .|.++..+.+-+..+. ++.+ .....++.++|.|||.||.
T Consensus 28 ~q~~~l~~~L~~-~G~~~~~~P~i~i~~~-----------~~~~~~~~l~~l~~~d~iiftS~N 79 (266)
T PRK08811 28 GEHAPLRRAVAR-HGGRLLALSPWRLQRL-----------DTAQARDALRQALAAPIVVFTSPA 79 (266)
T ss_pred HHHHHHHHHHHH-CCCcEEEcCceeecCC-----------CchhHHHHHhhcccCCEEEEECHH
Confidence 345677788888 4877765544221110 0000 0113567799999999975
No 116
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=46.05 E-value=1.9e+02 Score=25.12 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH-------hhcCEEEEecccCCCCc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-------AEADGILLGFPTRFGMM 74 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-------~~aD~ivigsP~y~~~~ 74 (192)
+|..++|.+.|.+..+.. . -+++-+-..-..+++ -+|+.. ...++ .....|.+-||-|.++.
T Consensus 74 fGg~~~L~~aI~~~~~~~-~--P~~I~V~ttC~~eiI-------GDDi~~-v~~~~~~~~p~~~~~pvi~v~tpgF~g~~ 142 (455)
T PRK14476 74 LGGDENVEEAILNICKKA-K--PKIIGLCTTGLTETR-------GDDVAG-ALKEIRARHPELADTPIVYVSTPDFKGAL 142 (455)
T ss_pred eCCHHHHHHHHHHHHHhh-C--CCEEEEeCcchHhhh-------hccHHH-HHHHHHhhccccCCCeEEEecCCCCCCcH
Confidence 577888999988887653 2 233333221111111 122211 11222 24578899999998876
Q ss_pred hHH----HHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 75 AAQ----FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 75 ~~~----~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
..- ++.+++.+...+....-..+.+-+++-+....+. +.++.+.|...|+.++
T Consensus 143 ~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D----~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 143 EDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGD----IEELREIIEAFGLEPI 199 (455)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCccc----HHHHHHHHHHcCCceE
Confidence 544 4455554432110112234455566432111222 4588888889999875
No 117
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=45.71 E-value=14 Score=24.68 Aligned_cols=56 Identities=21% Similarity=0.183 Sum_probs=33.5
Q ss_pred hcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 59 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 59 ~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
|.|+++.- ...+-|-...+++++. -.||++.+++..+.. +-..+.+.|...|+.+-
T Consensus 4 D~dGvl~~----g~~~ipga~e~l~~L~-------~~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 4 DLDGVLYN----GNEPIPGAVEALDALR-------ERGKPVVFLTNNSSR------SREEYAKKLKKLGIPVD 59 (101)
T ss_dssp ESTTTSEE----TTEE-TTHHHHHHHHH-------HTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--
T ss_pred eCccEeEe----CCCcCcCHHHHHHHHH-------HcCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCC
Confidence 44555543 3334456688999985 258999888875432 22367777778887653
No 118
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=45.28 E-value=49 Score=24.99 Aligned_cols=38 Identities=13% Similarity=0.418 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEec
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 67 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigs 67 (192)
.=+..+.+.++. .|.+++++++.+ .+++.++|+|||.-
T Consensus 14 e~~~~~~~~l~~-~g~~~~~~~~~~----------------------~~~l~~~d~iii~G 51 (200)
T PRK13527 14 EHIDALKRALDE-LGIDGEVVEVRR----------------------PGDLPDCDALIIPG 51 (200)
T ss_pred HHHHHHHHHHHh-cCCCeEEEEeCC----------------------hHHhccCCEEEECC
Confidence 345566677777 488888888754 25677899988865
No 119
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=45.03 E-value=33 Score=27.39 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred ccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCC
Q 029479 68 PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 107 (192)
Q Consensus 68 P~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~ 107 (192)
|.+.......++.|+++-. .+.|+++++++++|.
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 5566677778999999864 567787878877763
No 120
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=44.52 E-value=1.6e+02 Score=23.41 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|...++..+.+ .|.+|..+|...... +.....+.- +......+.+.++|.||++.|. ..+..+++.+.
T Consensus 10 ~mG~sla~~L~~-~g~~V~~~d~~~~~~-~~a~~~g~~---~~~~~~~~~~~~aDlVilavp~------~~~~~~~~~l~ 78 (279)
T PRK07417 10 LIGGSLGLDLRS-LGHTVYGVSRRESTC-ERAIERGLV---DEASTDLSLLKDCDLVILALPI------GLLLPPSEQLI 78 (279)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHHHH-HHHHHCCCc---ccccCCHhHhcCCCEEEEcCCH------HHHHHHHHHHH
Confidence 366778888887 488888888643111 111111100 0000123567899999999995 34455555553
No 121
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=44.41 E-value=82 Score=22.69 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=25.7
Q ss_pred cCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 93 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 93 ~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
.|+||++.+++--.+..|. .+..-++..|.+++-..
T Consensus 3 ~l~gKkviiiGdRDGiPgp------Aie~c~k~~gaevvfs~ 38 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGP------AIEECVKTTGAEVVFSS 38 (154)
T ss_pred cccCcEEEEEecCCCCCcH------HHHHHHhccCceEEEEe
Confidence 4799999999886555432 45666677899998543
No 122
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=44.39 E-value=24 Score=26.00 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcC
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVP 30 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~ 30 (192)
.|+|.+++.+|+..|-+ .|+.|.+.+-.
T Consensus 4 ~G~~sKvaraiA~~LC~-rgv~V~m~~~~ 31 (164)
T PF12076_consen 4 TGNTSKVARAIALALCR-RGVQVVMLSKE 31 (164)
T ss_pred cccccHHHHHHHHHHHh-cCCEEEEecHH
Confidence 69999999999999988 59998888433
No 123
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=44.16 E-value=43 Score=25.76 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=16.1
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
.+++..||.||+=- -|.....|+++
T Consensus 34 ~~~i~~AD~liLPG---VGaf~~am~~L 58 (204)
T COG0118 34 PEEILKADKLILPG---VGAFGAAMANL 58 (204)
T ss_pred HHHHhhCCEEEecC---CCCHHHHHHHH
Confidence 58899999999832 24444444433
No 124
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.11 E-value=91 Score=20.46 Aligned_cols=72 Identities=11% Similarity=-0.058 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhcc
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~ 87 (192)
+...+.+.+++ .|.+...+ =.+..... ........+.++|.||+-+-.-..+....+|..-.+
T Consensus 11 ~~~~~~~~~~~-~G~~~~~h-g~~~~~~~------------~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk--- 73 (97)
T PF10087_consen 11 RERRYKRILEK-YGGKLIHH-GRDGGDEK------------KASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK--- 73 (97)
T ss_pred cHHHHHHHHHH-cCCEEEEE-ecCCCCcc------------chhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH---
Confidence 45567777777 47777666 11100000 000135789999999999988787777777765554
Q ss_pred ccccccCCCCcEEEEE
Q 029479 88 LWRSQQLAGKPAGIFY 103 (192)
Q Consensus 88 ~~~~~~l~gK~~~~~~ 103 (192)
.++|+...-
T Consensus 74 -------~~ip~~~~~ 82 (97)
T PF10087_consen 74 -------YGIPIIYSR 82 (97)
T ss_pred -------cCCcEEEEC
Confidence 456775443
No 125
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=43.96 E-value=78 Score=20.62 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
.++.+.+.+++ .|.++.+ +..... ...+ .+.+++..||.||+..-+
T Consensus 2 AAeaL~~aA~~-~G~~i~V-Etqg~~--------------g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 2 AAEALESAAKA-KGWEVKV-ETQGSI--------------GLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHHH-CCCeEEE-EecCCc--------------CcCCCCCHHHHHhCCEEEEEecC
Confidence 35667777777 4877643 222110 0111 236899999999998654
No 126
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=43.42 E-value=98 Score=23.91 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.8
Q ss_pred hcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 59 EADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 59 ~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
..|.|+|.||. .+++|++.+.
T Consensus 170 ~~d~i~f~S~~-------~~~~f~~~~~ 190 (240)
T PRK09189 170 PFDAVLLYSRV-------AARRFFALMR 190 (240)
T ss_pred CCCEEEEeCHH-------HHHHHHHHHh
Confidence 36999999987 5788888763
No 127
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=42.43 E-value=1.2e+02 Score=21.49 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=47.1
Q ss_pred HHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhh--cCEEEEecccCCCCchHHHHHHHHHhccc
Q 029479 11 EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE--ADGILLGFPTRFGMMAAQFKAFLDATGGL 88 (192)
Q Consensus 11 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~--aD~ivigsP~y~~~~~~~~k~fld~~~~~ 88 (192)
.++..++. .|.+ ++++....+.+-+ .+.+.+ +|.|.+.+ ..+.....++.+++.+..
T Consensus 22 iv~~~lr~-~G~e--Vi~LG~~vp~e~i---------------~~~a~~~~~d~V~lS~--~~~~~~~~~~~~~~~L~~- 80 (137)
T PRK02261 22 ILDRALTE-AGFE--VINLGVMTSQEEF---------------IDAAIETDADAILVSS--LYGHGEIDCRGLREKCIE- 80 (137)
T ss_pred HHHHHHHH-CCCE--EEECCCCCCHHHH---------------HHHHHHcCCCEEEEcC--ccccCHHHHHHHHHHHHh-
Confidence 44455666 4755 4666653332221 234444 55555544 445666888999998862
Q ss_pred cccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 89 WRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 89 ~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
..+.+.++. .+|...-+ +.........+...|+..+
T Consensus 81 ---~~~~~~~i~---vGG~~~~~-~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 81 ---AGLGDILLY---VGGNLVVG-KHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred ---cCCCCCeEE---EECCCCCC-ccChHHHHHHHHHcCCCEE
Confidence 334444332 22322111 1112345566777886543
No 128
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.35 E-value=50 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEE
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL 65 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivi 65 (192)
||+..+++ .+++. |+++++++ + .+++.++|+|||
T Consensus 11 gn~~s~~~----~l~~~-g~~~~~v~--~----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 11 ANLSSVKF----AIERL-GYEPVVSR--D----------------------PDVILAADKLFL 44 (196)
T ss_pred chHHHHHH----HHHHC-CCeEEEEC--C----------------------HHHhCCCCEEEE
Confidence 67777666 44453 77777774 1 266788999998
No 129
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=42.34 E-value=1.1e+02 Score=23.97 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCC--CCChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVP--TITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~--~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
-++.+++.+++ .|+++..+.+-+..+.+ +.. .....++.++|.|||.||. -++.|++++
T Consensus 14 ~~~~l~~~l~~-~G~~~~~~P~i~i~p~~-----------~~~~~~~~l~~l~~~d~iifTS~n-------aV~~~~~~l 74 (255)
T PRK05752 14 ECAALAASLAE-AGIFSSSLPLLAIEPLP-----------ETPEQRALLLELDRYCAVIVVSKP-------AARLGLELL 74 (255)
T ss_pred HHHHHHHHHHH-cCCCEEEcCcEEEeeCC-----------CCHHHHHHHhcCCCCCEEEEECHH-------HHHHHHHHH
Confidence 34667778888 48877665443321100 000 0012567899999999975 456677666
Q ss_pred c
Q 029479 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 75 ~ 75 (255)
T PRK05752 75 D 75 (255)
T ss_pred H
Confidence 3
No 130
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=41.91 E-value=2e+02 Score=23.87 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
.|..+++..+.. .|.+|.+.+-............ +... ...+.+.+||.|++..|.
T Consensus 27 smG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~------G~~~~s~~eaa~~ADVVvLaVPd 83 (330)
T PRK05479 27 SQGHAHALNLRD-SGVDVVVGLREGSKSWKKAEAD------GFEVLTVAEAAKWADVIMILLPD 83 (330)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHC------CCeeCCHHHHHhcCCEEEEcCCH
Confidence 377888899988 4888876554321111111111 1111 124568889999999994
No 131
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=41.84 E-value=82 Score=21.83 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=12.0
Q ss_pred hHHhhcCEEEEecccC
Q 029479 55 NELAEADGILLGFPTR 70 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y 70 (192)
.+-.++|.||+|+--.
T Consensus 99 a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 99 VADHGITKLVMGASSD 114 (146)
T ss_pred HHHcCCCEEEEeccCC
Confidence 4456789999998754
No 132
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=41.45 E-value=45 Score=24.32 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=26.4
Q ss_pred hhcCEEEEecc-cCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 58 AEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 58 ~~aD~ivigsP-~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
.++|.|+|..- .+.....+.++.|+.+.. -++|+++.++++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 100 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICGA 100 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 68898776543 333334567888888764 256777766654
No 133
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=41.42 E-value=72 Score=23.50 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=29.4
Q ss_pred cCCCCcEEEEEecCCCC-CCcchHHHHHHHHHHHcCCEEecCCc
Q 029479 93 QLAGKPAGIFYSTGSQG-GGQETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 93 ~l~gK~~~~~~~~g~~~-g~~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
.++||++.++.+++.-+ .-+-..++.+.+.+...|+.|++.+-
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 47888888877764321 11334677888888888999987654
No 134
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=40.40 E-value=97 Score=23.64 Aligned_cols=61 Identities=16% Similarity=0.021 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
-.+.+.+.+++ .|.++..+.+-+..+.+. +.+......+..+|.|||.||. .++.|++.+.
T Consensus 12 ~~~~l~~~l~~-~G~~v~~~p~~~~~~~~~----------~~~~~~~~~~~~~d~iiftS~~-------av~~~~~~~~ 72 (249)
T PRK05928 12 KAEELVELLRE-LGFVALHFPLIEIEPGRQ----------LPQLAAQLAALGADWVIFTSKN-------AVEFLLSALK 72 (249)
T ss_pred HHHHHHHHHHH-cCCCEEEeccEEEecCCC----------cChHHHHhhCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 34567778888 488876665544311000 0000113568899999999975 5566666653
No 135
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=40.17 E-value=2e+02 Score=23.19 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhh----cCEEEEecccCCCCchHHHHHHH
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAE----ADGILLGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~----aD~ivigsP~y~~~~~~~~k~fl 82 (192)
.|...++..+.+ .|.++.++|......... ..... . ...+.+++.+ +|.|++..|. ...++..+
T Consensus 10 ~MG~~mA~~L~~-~g~~v~v~dr~~~~~~~~-~~~g~-~----~~~~~~e~~~~~~~~dvvi~~v~~-----~~~~~~v~ 77 (301)
T PRK09599 10 RMGGNMARRLLR-GGHEVVGYDRNPEAVEAL-AEEGA-T----GADSLEELVAKLPAPRVVWLMVPA-----GEITDATI 77 (301)
T ss_pred HHHHHHHHHHHH-CCCeEEEEECCHHHHHHH-HHCCC-e----ecCCHHHHHhhcCCCCEEEEEecC-----CcHHHHHH
Confidence 366777777777 488998888754211111 11110 0 0112344433 5999999986 23455555
Q ss_pred HHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 83 DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 83 d~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
+.+. ..++...+.+-++.+++ .....+.+.+...|..+++-++.
T Consensus 78 ~~l~-----~~l~~g~ivid~st~~~-----~~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 78 DELA-----PLLSPGDIVIDGGNSYY-----KDDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred HHHH-----hhCCCCCEEEeCCCCCh-----hHHHHHHHHHHHcCCEEEeCCCC
Confidence 5553 22332233232222221 23345667778899998876554
No 136
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=40.14 E-value=77 Score=23.71 Aligned_cols=48 Identities=19% Similarity=0.058 Sum_probs=30.7
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
...-++||.+++.-|+ ...+.+.++..+|.+ -.-|.+..++++..++|
T Consensus 65 ~aSPRhADvLlVtG~v-T~km~~~l~~~yeqm--------PePK~VIA~G~CA~sGG 112 (173)
T PRK14818 65 RASPRQADFMIVAGTL-TYKMAERARLLYDQM--------PEPKYVISMGSCSNCGG 112 (173)
T ss_pred cCCcccccEEEEeCcC-ccccHHHHHHHHHhC--------CCCCEEEEeccccccCC
Confidence 3567889998887776 334444555555544 35688888888765443
No 137
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=39.86 E-value=65 Score=23.85 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=17.5
Q ss_pred hhHHhhcCEEEEecccCCCCchHH
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQ 77 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~ 77 (192)
.+.+.+||.||.+++.=. -++..
T Consensus 82 ~~~l~~aDiVIsat~~~~-ii~~~ 104 (168)
T cd01080 82 KEHTKQADIVIVAVGKPG-LVKGD 104 (168)
T ss_pred HHHHhhCCEEEEcCCCCc-eecHH
Confidence 467999999999999844 34443
No 138
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.23 E-value=2.4e+02 Score=23.91 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHh---hcCEEEEecccCCCCchHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA---EADGILLGFPTRFGMMAAQF 78 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~---~aD~ivigsP~y~~~~~~~~ 78 (192)
+|..++|.+.|.+..+.. . -+++-+-..-..+.+ .+|+.. ...++. +...|.+-+|-|.++...-.
T Consensus 68 fGg~~~L~~~i~~~~~~~-~--P~~i~v~~tC~~~~i-------GdDi~~-v~~~~~~~~~~~vi~v~t~gf~g~~~~G~ 136 (410)
T cd01968 68 FGGEKKLYKAILEIIERY-H--PKAVFVYSTCVVALI-------GDDIDA-VCKTASEKFGIPVIPVHSPGFVGNKNLGN 136 (410)
T ss_pred eccHHHHHHHHHHHHHhC-C--CCEEEEECCCchhhh-------ccCHHH-HHHHHHHhhCCCEEEEECCCcccChhHHH
Confidence 477888999998888763 2 233333322111111 122211 122222 57788888999988755433
Q ss_pred ----HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 79 ----KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 79 ----k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
+.+++.+.....+..-..+.+-+++...+. +. +.++.+.|...|+.++.
T Consensus 137 ~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d----~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 137 KLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GE----LWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-cc----HHHHHHHHHHcCCeEEE
Confidence 344444421000011124566677765442 22 44788888889998764
No 139
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=38.79 E-value=2.4e+02 Score=24.03 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH-------hhcCEEEEecccCCCCc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-------AEADGILLGFPTRFGMM 74 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-------~~aD~ivigsP~y~~~~ 74 (192)
+|..++|.+.|.+..+.. . -+++-+-..-..+.+ .+|+.. ...++ .....+.+-+|-|.++.
T Consensus 63 ~Gg~~~L~~~i~~~~~~~-~--p~~I~v~~tC~~~li-------GdDi~~-v~~~~~~~~~~~~~~~vi~v~tpgf~g~~ 131 (428)
T cd01965 63 FGGEDNLIEALKNLLSRY-K--PDVIGVLTTCLTETI-------GDDVAG-FIKEFRAEGPEPADFPVVYASTPSFKGSH 131 (428)
T ss_pred ECcHHHHHHHHHHHHHhc-C--CCEEEEECCcchhhc-------CCCHHH-HHHHHHhhccCCCCCeEEEeeCCCCCCcH
Confidence 466788888888887652 2 223333221011111 122221 12333 35668888899998776
Q ss_pred hHHHHHHHHHhcccccccc--CCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 75 AAQFKAFLDATGGLWRSQQ--LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 75 ~~~~k~fld~~~~~~~~~~--l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
..-....+..+...+.... -..+.+-+++.+....+ .+..+.+.|...|+.++.
T Consensus 132 ~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~----d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPG----DVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCcc----CHHHHHHHHHHcCCCEEE
Confidence 5444444433322111111 23344555553322221 255888888899988875
No 140
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=38.23 E-value=80 Score=24.25 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=11.8
Q ss_pred hHHhhcCEEEEecccC
Q 029479 55 NELAEADGILLGFPTR 70 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y 70 (192)
+++.++|+||+.-|--
T Consensus 35 ~~l~~~d~iIlPG~g~ 50 (210)
T CHL00188 35 SELAQVHALVLPGVGS 50 (210)
T ss_pred HHhhhCCEEEECCCCc
Confidence 5577899999876543
No 141
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=37.98 E-value=61 Score=24.41 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
.||...+++.+. . .|+++++++- .+++.++|+||+..|
T Consensus 8 ~gn~~~l~~~l~----~-~g~~v~v~~~------------------------~~~l~~~d~lii~G~ 45 (196)
T TIGR01855 8 VGNLGSVKRALK----R-VGAEPVVVKD------------------------SKEAELADKLILPGV 45 (196)
T ss_pred CcHHHHHHHHHH----H-CCCcEEEEcC------------------------HHHhccCCEEEECCC
Confidence 367666666554 4 3778887772 145778999999775
No 142
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=37.91 E-value=2.3e+02 Score=23.30 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=27.0
Q ss_pred ChhHHhhcCEEEEecccCCCCc-hHHHHHHHHHhc
Q 029479 53 TPNELAEADGILLGFPTRFGMM-AAQFKAFLDATG 86 (192)
Q Consensus 53 ~~~~l~~aD~ivigsP~y~~~~-~~~~k~fld~~~ 86 (192)
+.+..+++|.+|+-+| +|.. +..+|+|++.+.
T Consensus 133 D~EAv~~aei~I~ftP--fG~~q~~Iikkii~~lp 165 (340)
T TIGR01723 133 DREAVEDADIIITWLP--KGNKQPDIIKKFIDDIP 165 (340)
T ss_pred cHHHhcCCCEEEEEcC--CCCCchHHHHHHHhhCC
Confidence 4688999999999999 4664 688999999884
No 143
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=37.83 E-value=87 Score=27.50 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEe
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLG 66 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivig 66 (192)
||...++++.+.+++ .|.++++ +..... ...+ .+.+++.+||.||+.
T Consensus 18 ht~mAaeaL~~aA~~-~G~~i~V-Etqg~~--------------g~~~~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 18 HTYMVAEALEQKARS-LGHTIKV-ETQGSS--------------GVENRLSSEEIAAADYVILA 65 (482)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------cCCCCCCHHHHHhCCEEEEe
Confidence 677777888888888 5877643 222210 0011 236899999999999
No 144
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=37.77 E-value=1.5e+02 Score=21.92 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCC
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPE 31 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~ 31 (192)
+||..++++ +++ .|++++++....
T Consensus 9 ~~~~~l~~~----l~~-~g~~~~~~~~~~ 32 (188)
T TIGR00888 9 QYTQLIARR----LRE-LGVYSELVPNTT 32 (188)
T ss_pred hHHHHHHHH----HHH-cCCEEEEEeCCC
Confidence 455555544 466 388888887653
No 145
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.69 E-value=66 Score=27.05 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
.|-..++..+.+ .|.+|.+++..+.. ...+.+.+||.||++.|+.. +..+++.+
T Consensus 109 lmG~slA~~l~~-~G~~V~~~d~~~~~------------------~~~~~~~~aDlVilavP~~~------~~~~~~~l 162 (374)
T PRK11199 109 QLGRLFAKMLTL-SGYQVRILEQDDWD------------------RAEDILADAGMVIVSVPIHL------TEEVIARL 162 (374)
T ss_pred hhhHHHHHHHHH-CCCeEEEeCCCcch------------------hHHHHHhcCCEEEEeCcHHH------HHHHHHHH
Confidence 355677777877 48888888864310 01245779999999999853 45555555
No 146
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.23 E-value=73 Score=21.58 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhH--HhhcCEEEEecccCCCCchHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNE--LAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~--l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
.|..+++.+.+.+++ .|.++++....-. +. .+. ..++|.|+++ |+++.-
T Consensus 13 STSlla~k~k~~~~e-~gi~~~i~a~~~~---e~----------------~~~~~~~~~DvIll~---------PQi~~~ 63 (104)
T PRK09590 13 SSSMMAKKTTEYLKE-QGKDIEVDAITAT---EG----------------EKAIAAAEYDLYLVS---------PQTKMY 63 (104)
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEecHH---HH----------------HHhhccCCCCEEEEC---------hHHHHH
Confidence 456788999999988 5887765443210 00 111 2368977765 566666
Q ss_pred HHHhccccccccCCCCcEEEEEe
Q 029479 82 LDATGGLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~~ 104 (192)
++.+... ..-.++|+.++-.
T Consensus 64 ~~~i~~~---~~~~~ipv~~I~~ 83 (104)
T PRK09590 64 FKQFEEA---GAKVGKPVVQIPP 83 (104)
T ss_pred HHHHHHH---hhhcCCCEEEeCH
Confidence 6666411 1235788887765
No 147
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=37.09 E-value=2.2e+02 Score=23.71 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCC--ChhHHhhcCEEEEecccCCCCchHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI--TPNELAEADGILLGFPTRFGMMAAQFK 79 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~--~~~~l~~aD~ivigsP~y~~~~~~~~k 79 (192)
+|..+++.+.+.+.+.+. .- +++-+-..-..+.+ .+|+... ..++-.....+.+-+|-+.++...-..
T Consensus 62 ~Gg~e~l~~~i~~~~~~~-~p--~~i~v~~tc~~~li-------GdDi~~v~~~~~~~~~~~vv~~~~~gf~~~~~~G~~ 131 (399)
T cd00316 62 FGGGEKLLEAIINELKRY-KP--KVIFVYTTCTTELI-------GDDIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYD 131 (399)
T ss_pred eCCHHHHHHHHHHHHHHc-CC--CEEEEecCchhhhh-------ccCHHHHHHHHHHhhCCceEEeeCCCCcccHHHHHH
Confidence 455888888888888763 32 34444322111111 1222111 112235788999999999876665444
Q ss_pred HHHHHhcccccc----ccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 80 AFLDATGGLWRS----QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 80 ~fld~~~~~~~~----~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
..+..+...+.. ..-..+.+-+++...... ..+..+.+.|...|+.++.
T Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~ 184 (399)
T cd00316 132 AAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNA 184 (399)
T ss_pred HHHHHHHHHHhcccCcCCCCCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEE
Confidence 444444322211 222345555666542221 1245788888889998864
No 148
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=36.95 E-value=1.4e+02 Score=20.70 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=41.1
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
..-+..+|++|+....-...-...+..|++.+.. ....+.++.++++--....................++.++.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~----~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e 141 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELRE----YADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFE 141 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEE
Confidence 4567889999998776543333445566666531 12257888888873222111111122344444556776543
No 149
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=36.84 E-value=79 Score=23.88 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEec
Q 029479 13 QKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 67 (192)
Q Consensus 13 ~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigs 67 (192)
.+.+++ .|+++++++... .+++.++|+|||.-
T Consensus 17 ~~~l~~-~G~~v~~~s~~~----------------------~~~l~~~D~lilPG 48 (198)
T cd03130 17 LELLEA-AGAELVPFSPLK----------------------DEELPDADGLYLGG 48 (198)
T ss_pred HHHHHH-CCCEEEEECCCC----------------------CCCCCCCCEEEECC
Confidence 345666 488887776431 13355699999987
No 150
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=36.77 E-value=2.4e+02 Score=23.24 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=47.4
Q ss_pred hhHHhhcCEEEEecccCCCC----chHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCE
Q 029479 54 PNELAEADGILLGFPTRFGM----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 129 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~----~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~ 129 (192)
.+++.++.. .|+||+- .|-|+..=+-.+... .+.++|++++.++-+ ++ ....+.......||.
T Consensus 113 ve~lA~~s~----VPViNgLtD~~HP~Q~LADl~Ti~E~--~g~l~g~k~a~vGDg----NN---v~nSl~~~~a~~G~d 179 (310)
T COG0078 113 LEELAKYSG----VPVINGLTDEFHPCQALADLMTIKEH--FGSLKGLKLAYVGDG----NN---VANSLLLAAAKLGMD 179 (310)
T ss_pred HHHHHHhCC----CceEcccccccCcHHHHHHHHHHHHh--cCcccCcEEEEEcCc----ch---HHHHHHHHHHHhCCe
Confidence 344555543 5898863 333332222122110 134899999887664 12 223454445578887
Q ss_pred EecCCccCCCCCccchhcccCCCCCcceecCCCCCCCCHHHHHHHHHHHHH
Q 029479 130 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKY 180 (192)
Q Consensus 130 vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~e~~~~lg~~ 180 (192)
+.-.. | . ...|+++-.+.|+++++.
T Consensus 180 v~ia~-----------------P--------k-~~~p~~~~~~~a~~~a~~ 204 (310)
T COG0078 180 VRIAT-----------------P--------K-GYEPDPEVVEKAKENAKE 204 (310)
T ss_pred EEEEC-----------------C--------C-cCCcCHHHHHHHHHHHHh
Confidence 74211 1 1 136888888888887753
No 151
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=36.75 E-value=41 Score=25.01 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhc----CCceEEEEEcCCCCC--HHHhhhcCCCCCCCCCCCChhHH--hhcCEEEEecccCCCCch
Q 029479 4 HVEKLAEEIQKGAASV----EGVEAKLWQVPETLS--EDVLGKMGAGPKSDVPTITPNEL--AEADGILLGFPTRFGMMA 75 (192)
Q Consensus 4 nT~~la~~i~~~~~~~----~g~~v~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~~~l--~~aD~ivigsP~y~~~~~ 75 (192)
-|..|++.+++.+++. .|.+|+++-..+.-- .+. ..| .+++ ...+..|..+|+|.+.--
T Consensus 26 ~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eA-a~~------------ae~f~~~~V~~titvtpcWcy~~e 92 (171)
T PF07881_consen 26 QTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEA-AAC------------AEKFKREGVGVTITVTPCWCYGSE 92 (171)
T ss_dssp HHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHH-HHH------------HHHHHCCTEEEEEEEESS---HHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHH-HHH------------HHHHHHcCCCEEEEEEeeeecchh
Confidence 5778888888888762 377888887766421 111 001 2333 456789999999965432
Q ss_pred HHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 76 AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 76 ~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
. +|. ....-|++..|....++ |. -.+......+.+.|....
T Consensus 93 t-----md~-------~~~~p~aiwgfngterP-Ga--VyLaAa~aa~~Q~Gip~f 133 (171)
T PF07881_consen 93 T-----MDM-------DPNTPKAIWGFNGTERP-GA--VYLAAALAAHNQKGIPAF 133 (171)
T ss_dssp H-----S----------TTS-EEEEE---SSS--HH--HHHHHHHHHHHHCT---E
T ss_pred h-----hcc-------CcCCCccEEeecCCCCC-cH--HHHHHHHHHHhcCCCcce
Confidence 1 121 23445666677665443 22 123444445566776543
No 152
>PRK06490 glutamine amidotransferase; Provisional
Probab=36.68 E-value=1.4e+02 Score=23.41 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEE-eccc
Q 029479 12 IQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILL-GFPT 69 (192)
Q Consensus 12 i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivi-gsP~ 69 (192)
+.+.+++ .|.++++++...-. ..++++.++|++|| |+|-
T Consensus 24 l~~~l~~-~g~~~~v~~~~~~~------------------~~p~~l~~~dgvii~Ggp~ 63 (239)
T PRK06490 24 VGQLLQE-RGYPLDIRRPRLGD------------------PLPDTLEDHAGAVIFGGPM 63 (239)
T ss_pred HHHHHHH-CCCceEEEeccCCC------------------CCCCcccccCEEEEECCCC
Confidence 3444555 47788877754210 01246778897555 5663
No 153
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=36.44 E-value=1.2e+02 Score=22.74 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=23.4
Q ss_pred HHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEeccc
Q 029479 11 EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPT 69 (192)
Q Consensus 11 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~ 69 (192)
.+...++. .|+++++++..+ ++.++|+|||+...
T Consensus 14 ~l~~~~~~-~G~~~~~~~~~~------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 14 DLDPLARE-PGVDVRYVEVPE------------------------GLGDADLIILPGSK 47 (194)
T ss_pred HHHHHHhc-CCceEEEEeCCC------------------------CCCCCCEEEECCCc
Confidence 34455555 488888888643 26788999987654
No 154
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=35.57 E-value=1.6e+02 Score=20.82 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
+.++..++. .|.+ ++|+.-..+.+.+ .+...+.|.=+++-....++--..|+.+++.+.
T Consensus 17 niv~~~L~~-~Gfe--VidLG~~v~~e~~---------------v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 17 KILDHAFTE-AGFN--VVNLGVLSPQEEF---------------IDAAIETDADAILVSSLYGHGEIDCKGLREKCD 75 (128)
T ss_pred HHHHHHHHH-CCCE--EEECCCCCCHHHH---------------HHHHHHcCCCEEEEeccccCCHHHHHHHHHHHH
Confidence 345556666 4755 5677654333222 355555566566666677777789999999986
No 155
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.47 E-value=78 Score=22.88 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC--CChhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT--ITPNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~--~~~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
|-|-.+...+++.+.+ .|.+|..+-=......+ ...-.....|+.+ ...+.+..+|.||...+.+... ...+++
T Consensus 5 GatG~vG~~l~~~L~~-~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~-~~~~~~ 80 (183)
T PF13460_consen 5 GATGFVGRALAKQLLR-RGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKD-VDAAKN 80 (183)
T ss_dssp TTTSHHHHHHHHHHHH-TTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTH-HHHHHH
T ss_pred CCCChHHHHHHHHHHH-CCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhccc-cccccc
Confidence 4555677888888877 47777665533210011 0000001122221 1246688999999999887775 667788
Q ss_pred HHHHhccccccccCCCCcEEEEEecCC
Q 029479 81 FLDATGGLWRSQQLAGKPAGIFYSTGS 107 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~~~g~ 107 (192)
+++.+.. -.=|.+.++++.+.
T Consensus 81 ~~~a~~~------~~~~~~v~~s~~~~ 101 (183)
T PF13460_consen 81 IIEAAKK------AGVKRVVYLSSAGV 101 (183)
T ss_dssp HHHHHHH------TTSSEEEEEEETTG
T ss_pred ccccccc------cccccceeeecccc
Confidence 8887741 22345556666553
No 156
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=34.48 E-value=1.7e+02 Score=20.79 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
...+..+|++||....-...-...++.|+..+.. ...++.++.++++--....................++.++
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 3456789999998776654444566777776641 2235678888877422211111223344444555676654
No 157
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=34.40 E-value=76 Score=23.87 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
.||...+++ .++. .|+++++++ + .+++.++|+||+.-|
T Consensus 9 ~gn~~~~~~----~l~~-~g~~v~~~~--~----------------------~~~l~~~d~lilpG~ 46 (199)
T PRK13181 9 AGNLRSVAN----ALKR-LGVEAVVSS--D----------------------PEEIAGADKVILPGV 46 (199)
T ss_pred CChHHHHHH----HHHH-CCCcEEEEc--C----------------------hHHhccCCEEEECCC
Confidence 366766665 4455 388887763 1 366889999999553
No 158
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=34.29 E-value=2.5e+02 Score=22.75 Aligned_cols=106 Identities=12% Similarity=0.020 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhh---cCEEEEecccCCCCchHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAE---ADGILLGFPTRFGMMAAQ 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~---aD~ivigsP~y~~~~~~~ 77 (192)
+|-|..++..+.+.+.. .|.+ .+..+..-...+ .-.+.+. .+.+++-+ -|..||..|- ..
T Consensus 12 ~g~~~~~~~~~~~~~~~-~g~~-~v~~V~p~~~~~--------~v~G~~~y~sv~dlp~~~~~Dlavi~vpa------~~ 75 (286)
T TIGR01019 12 QGITGSQGSFHTEQMLA-YGTN-IVGGVTPGKGGT--------TVLGLPVFDSVKEAVEETGANASVIFVPA------PF 75 (286)
T ss_pred ecCCcHHHHHHHHHHHh-CCCC-EEEEECCCCCcc--------eecCeeccCCHHHHhhccCCCEEEEecCH------HH
Confidence 46677888888888877 4666 444443210000 0011221 24566666 4999999993 55
Q ss_pred HHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 78 FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 78 ~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
+...++.+. -+|-+.+++-+.|.+ +.....+.+....+|+.++++.
T Consensus 76 v~~~l~e~~-------~~Gvk~avIis~Gf~----e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 76 AADAIFEAI-------DAGIELIVCITEGIP----VHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred HHHHHHHHH-------HCCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEEECCC
Confidence 556666553 256566666666643 2223467777788999999863
No 159
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=33.90 E-value=65 Score=26.39 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecC
Q 029479 79 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
+.|++.+.+..-...|.||+++++..-+.. ......+.+.|...|..+.+.
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~----~~~~~~v~~~L~~AGA~v~g~ 116 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGAD----DEDVDAVRELLEQAGATVTGR 116 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCC----hHHHHHHHHHHHHCCCeEEEE
Confidence 455555544333578999999999974332 234668888899999998764
No 160
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=33.88 E-value=69 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=19.5
Q ss_pred hhHHhhcCEEEEecccCCCCc--hHHHHHHHH
Q 029479 54 PNELAEADGILLGFPTRFGMM--AAQFKAFLD 83 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~--~~~~k~fld 83 (192)
++++.++|++||+.|.-..+- -..++.|++
T Consensus 229 p~~l~d~d~LvI~~P~~~ls~~e~~~Ldqfl~ 260 (552)
T TIGR03521 229 LADLKKFDLIVIAKPTEAFSEREKYILDQYIM 260 (552)
T ss_pred cccccCcCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 466789999999999743332 234444444
No 161
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=33.52 E-value=61 Score=24.42 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=31.4
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
..-+.+|.+++--|+ +..++..+++++ ...-+-|.+..++++...+|
T Consensus 69 ~sPR~aDillVeG~V-----T~~m~~~l~~~~----e~~p~pk~VIAvGaCA~~GG 115 (180)
T PRK14820 69 FSPRQADMLMVMGTI-----AKKMAPVLKQVY----LQMAEPRWVVAVGACASSGG 115 (180)
T ss_pred CCCccceEEEEEecC-----CcccHHHHHHHH----HhcCCCCeEEEEecccccCC
Confidence 445788988887666 555567777765 23346688888888765543
No 162
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.32 E-value=2.5e+02 Score=24.03 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHh-------hcCEEEEecccCCCCc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA-------EADGILLGFPTRFGMM 74 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-------~aD~ivigsP~y~~~~ 74 (192)
+|..++|.++|.+..+.. . -+++-+-..-..+.+ .+|+.. ...++. +...+.+-||-|-++.
T Consensus 67 ~Gg~~~L~~ai~~~~~~~-~--p~~I~v~ttC~~~ii-------GdDi~~-v~~~~~~~~~~~~~~~vi~v~tpgf~gs~ 135 (435)
T cd01974 67 FGGQNNLIDGLKNAYAVY-K--PDMIAVSTTCMAEVI-------GDDLNA-FIKNAKNKGSIPADFPVPFANTPSFVGSH 135 (435)
T ss_pred ECcHHHHHHHHHHHHHhc-C--CCEEEEeCCchHhhh-------hccHHH-HHHHHHHhccCCCCCeEEEecCCCCccCH
Confidence 466788888888888762 2 234444322111111 122211 112221 4678899999998887
Q ss_pred hHHHHHHHHHhccccccc-c--CCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 75 AAQFKAFLDATGGLWRSQ-Q--LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 75 ~~~~k~fld~~~~~~~~~-~--l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
..-...+++.+...+... . -..+.+-+++. +...+ . .+.++.+.|...|+.++
T Consensus 136 ~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~--~~~~~-d-~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 136 ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPG--FDTYA-G-NMREIKRLLELMGVDYT 191 (435)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECC--CCCCc-c-hHHHHHHHHHHcCCCEE
Confidence 766555555553211111 1 12233445532 22111 1 25688888889999886
No 163
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=33.13 E-value=1.1e+02 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.012 Sum_probs=27.8
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 109 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~ 109 (192)
..-+.||.+|+.-|+ -..+.+.++...+.+ -.-|.+..+|++.-.+
T Consensus 67 aSPRhADvliVtG~V-T~km~~~L~rlyeqm--------PePK~VIA~GaCA~sG 112 (225)
T CHL00023 67 SSPRQADLILTAGTV-TMKMAPSLVRLYEQM--------PEPKYVIAMGACTITG 112 (225)
T ss_pred CCcccceEEEEecCC-ccccHHHHHHHHHhc--------CCCCeEEEEccccccC
Confidence 455678888887665 333444444444443 3557888888875543
No 164
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=33.05 E-value=2.1e+02 Score=21.32 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=45.2
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
.-+.++|++||..-+-.-.-...++.|++.+.. ...+-++.++++--.-..................++.++
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 456899999999888877766778888888852 235677778887422211111123344444555676554
No 165
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=33.00 E-value=1.1e+02 Score=27.40 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEeccc
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~ 69 (192)
||...++.+.+.+++ .|.++++ +..... ...+ .+.+++.+||.||+.+-+
T Consensus 118 ht~mAAeaL~~aA~~-~G~~i~V-Etqg~~--------------g~~n~lt~~~i~~Ad~VIia~d~ 168 (563)
T PRK10712 118 HTFMAAEAIETEAKK-RGWWVKV-ETRGSV--------------GAGNAITPEEVAAADLVIVAADI 168 (563)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------ccCCCCCHHHHHhCCEEEEecCC
Confidence 677778888888888 5877643 222110 0011 246899999999999765
No 166
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.99 E-value=1.7e+02 Score=20.47 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=33.1
Q ss_pred EEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCC
Q 029479 62 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 128 (192)
Q Consensus 62 ~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~ 128 (192)
.||+|.+.+....++.++.=++.-..++. +++.--++.|+|...+....-...+.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 58899999977766554444444332221 2333334556554433112224456666666664
No 167
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=32.98 E-value=1.9e+02 Score=20.90 Aligned_cols=45 Identities=16% Similarity=0.008 Sum_probs=30.6
Q ss_pred HHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCC
Q 029479 56 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 109 (192)
Q Consensus 56 ~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~ 109 (192)
.=+.||.+++--| ++.+|+.-+.+.+ +..-.-|.+..++++.-++
T Consensus 46 sPRhADiLlVTG~-----vT~~~~e~lkk~Y----ea~PePKiViA~GaCa~~G 90 (148)
T COG3260 46 SPRHADILLVTGA-----VTRQMREPLKKAY----EAMPEPKIVIAVGACALSG 90 (148)
T ss_pred CCccccEEEEecc-----ccHHHHHHHHHHH----HhCCCCcEEEEEcccccCC
Confidence 3456777776544 5778888888876 2334668888888876654
No 168
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=32.76 E-value=65 Score=26.17 Aligned_cols=45 Identities=18% Similarity=-0.005 Sum_probs=28.2
Q ss_pred hhHHhhcCEEEEecc-cCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 54 PNELAEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ivigsP-~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
.+++.++|.||+... .......+.+..||.+.. -.+|.++.++++
T Consensus 70 ~~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 115 (322)
T PRK09393 70 LELLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICSG 115 (322)
T ss_pred ccccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcHH
Confidence 345778999998442 112233677777777763 366777766664
No 169
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.18 E-value=95 Score=23.59 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
||...+.+++. .. |+++.+++ + .+++.++|+||+--+
T Consensus 10 gN~~s~~~al~----~~-g~~~~~v~--~----------------------~~~l~~~D~lIlPG~ 46 (192)
T PRK13142 10 GNISNVKRAIE----HL-GYEVVVSN--T----------------------SKIIDQAETIILPGV 46 (192)
T ss_pred ccHHHHHHHHH----Hc-CCCEEEEe--C----------------------HHHhccCCEEEECCC
Confidence 56666655555 33 77777664 2 377889999988554
No 170
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=31.59 E-value=3.9e+02 Score=24.51 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHh-hcCEEEEecccCCCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELA-EADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-~aD~ivigsP~y~~~~~~~~k~ 80 (192)
+|+.-..|..+++.|++ .|++++++|+....|-+. .....+. ....||..==-.-|++-+.+..
T Consensus 552 ~G~~v~~Al~AA~~L~~-~GI~v~VId~rsikPlD~--------------~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~ 616 (641)
T PLN02234 552 YGSAVQRCLEAASMLSE-RGLKITVADARFCKPLDV--------------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQ 616 (641)
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEecCCcCCCCH--------------HHHHHHHHhCCEEEEECCCCCCcHHHHHHH
Confidence 57777788888888887 599999999986533110 0123444 4444444332234889888888
Q ss_pred HHHHh
Q 029479 81 FLDAT 85 (192)
Q Consensus 81 fld~~ 85 (192)
++-..
T Consensus 617 ~l~e~ 621 (641)
T PLN02234 617 FLALD 621 (641)
T ss_pred HHHHc
Confidence 88653
No 171
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=31.28 E-value=1.1e+02 Score=27.27 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=20.5
Q ss_pred CCCHHHHH--HHHHHHHhhhcCCceEEEE
Q 029479 1 MYGHVEKL--AEEIQKGAASVEGVEAKLW 27 (192)
Q Consensus 1 ~~GnT~~l--a~~i~~~~~~~~g~~v~~~ 27 (192)
|+|.|.++ ++.+++.|.+ .|++..+-
T Consensus 1 ~~~~~~~~~~~~~l~~~L~~-~Gv~~vFg 28 (561)
T PRK06048 1 MTGSTEKMTGARAIIKCLEK-EGVEVIFG 28 (561)
T ss_pred CCCccccccHHHHHHHHHHH-cCCCEEEE
Confidence 67877776 8999999999 58886444
No 172
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=31.25 E-value=1.7e+02 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 13 QKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 13 ~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
.+.+++ .|++++++...+ ..+.++|+|||..-
T Consensus 18 ~~al~~-~G~~~~~i~~~~-----------------------~~l~~~d~lilpGG 49 (227)
T TIGR01737 18 VYALRL-LGVDAEIVWYED-----------------------GSLPDYDGVVLPGG 49 (227)
T ss_pred HHHHHH-CCCeEEEEecCC-----------------------CCCCCCCEEEECCC
Confidence 455556 488888875432 22567999888663
No 173
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=31.13 E-value=1.1e+02 Score=23.31 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=29.0
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG 111 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~ 111 (192)
..=++||.+++.-|+ ..++.+.++..++.+ -+-|.+..++++...+|.
T Consensus 63 asPR~ADvllVtG~V-t~km~~~l~~~y~qm--------PePK~VIA~GaCA~sGG~ 110 (189)
T PRK14813 63 SSPRQSDLMIVAGTV-TMKMAERVVRLYEQM--------PEPRYVLSMGSCSNCGGP 110 (189)
T ss_pred CCcccceEEEEeccC-chhhHHHHHHHHHhC--------CCCCEEEEecccccCCCC
Confidence 334568888887665 233334444444443 356888889987655444
No 174
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.11 E-value=80 Score=23.84 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=11.4
Q ss_pred hHHhhcCEEEEecc
Q 029479 55 NELAEADGILLGFP 68 (192)
Q Consensus 55 ~~l~~aD~ivigsP 68 (192)
+++.++|+|||..|
T Consensus 33 ~~l~~~d~iiipG~ 46 (205)
T PRK13141 33 EEILAADGVILPGV 46 (205)
T ss_pred HHhccCCEEEECCC
Confidence 67889999999664
No 175
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=30.88 E-value=2.9e+02 Score=23.64 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH------hhcCEEEEecccCCCCch
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL------AEADGILLGFPTRFGMMA 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l------~~aD~ivigsP~y~~~~~ 75 (192)
+|..++|.++|.+..+.. . -+++-+-..-..+.+ -+|... ...++ .....|.+-+|-|.++..
T Consensus 66 fGg~~kL~~aI~~~~~~~-~--P~~I~V~ttc~~~ii-------GdDi~~-v~~~~~~~~~~~~~~vi~v~t~gF~g~~~ 134 (429)
T cd03466 66 YGGEKNLKKGLKNVIEQY-N--PEVIGIATTCLSETI-------GEDVPR-IIREFREEVDDSEPKIIPASTPGYGGTHV 134 (429)
T ss_pred ECcHHHHHHHHHHHHHhc-C--CCEEEEeCCchHHHh-------hcCHHH-HHHHHhhcccCCCCcEEEEECCCCcccHH
Confidence 577888999998888763 2 233443322111111 122211 12222 345678888999987775
Q ss_pred HHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 76 AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 76 ~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
.-....++.+...+....-+.+.+-+++.+-+ . ..+..+.+.|...|+.++-
T Consensus 135 ~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~-~----~D~~ei~~lL~~~Gl~~~~ 186 (429)
T cd03466 135 EGYDTAVRSIVKNIAVDPDKIEKINVIAGMMS-P----ADIREIKEILREFGIEYIL 186 (429)
T ss_pred HHHHHHHHHHHHHhccCCCCCCcEEEECCCCC-h----hHHHHHHHHHHHcCCCeEE
Confidence 44444443332111111112233445543311 1 1256888888899998853
No 176
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=30.84 E-value=75 Score=24.47 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=27.7
Q ss_pred HhhcCEEEEec---ccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 57 LAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 57 l~~aD~ivigs---P~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
..++|+|+|.. |.|...-...+..|+.++. -++|+++.+|++
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaIC~g 132 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFY-------ENGKVVAAVCHG 132 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHH-------HcCCEEEEEcch
Confidence 56899999874 3454545677888887764 256666666553
No 177
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.61 E-value=3e+02 Score=22.55 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCC
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPET 32 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~ 32 (192)
+..-++...+.+++. |++++++.+.+.
T Consensus 47 s~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 73 (301)
T PRK14194 47 SQVYVRNKILRAEEA-GIRSLEHRLPAD 73 (301)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 445567777788884 999999998764
No 178
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=30.60 E-value=97 Score=22.32 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=26.4
Q ss_pred CCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecC
Q 029479 94 LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 94 l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
.+.|+++++|.+..+.-. .-...+.|..+|..+++-
T Consensus 14 ~~~K~IAvVG~S~~P~r~----sy~V~kyL~~~GY~ViPV 49 (140)
T COG1832 14 KSAKTIAVVGASDKPDRP----SYRVAKYLQQKGYRVIPV 49 (140)
T ss_pred HhCceEEEEecCCCCCcc----HHHHHHHHHHCCCEEEee
Confidence 357999999987655322 336777888999999873
No 179
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=29.89 E-value=1.6e+02 Score=23.16 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEE
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQ 28 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~ 28 (192)
|+.+ ||+.|++.+.+ .|+++...+
T Consensus 78 g~~e-La~~i~~~l~~-~gi~~~~~~ 101 (253)
T cd07363 78 GSPE-LAERVAELLKA-AGIPARLDP 101 (253)
T ss_pred CCHH-HHHHHHHHHHh-cCCCccccC
Confidence 4444 89999999988 588776644
No 180
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=29.78 E-value=2.3e+02 Score=20.82 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=35.6
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEe-cccCCCCchHHHHHHHHHhc
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG-FPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivig-sP~y~~~~~~~~k~fld~~~ 86 (192)
..+...+++ .|.+++++++... .. . ..+++.++|+|||. +|-.-.. ....+.+++.+.
T Consensus 11 ~~l~~~l~~-~~~~~~v~~~~~~-~~-~---------------~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~ 69 (192)
T PF00117_consen 11 HSLVRALRE-LGIDVEVVRVDSD-FE-E---------------PLEDLDDYDGIIISGGPGSPYD-IEGLIELIREAR 69 (192)
T ss_dssp HHHHHHHHH-TTEEEEEEETTGG-HH-H---------------HHHHTTTSSEEEEECESSSTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCeEEEEECCCc-hh-h---------------hhhhhcCCCEEEECCcCCcccc-cccccccccccc
Confidence 456666777 4889999998751 00 0 01257889988775 4444444 566666676653
No 181
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=29.68 E-value=3e+02 Score=22.16 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCCh-hHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITP-NELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~-~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
.|...++..+.+ .|.++.+++.... .+........ ...+. +...++|.||+..|.. +.++..+..-
T Consensus 10 ~MG~~ma~~L~~-~G~~v~v~~~~~~--~~~~~~~g~~-----~~~s~~~~~~~advVi~~v~~~-----~~v~~v~~~~ 76 (292)
T PRK15059 10 IMGTPMAINLAR-AGHQLHVTTIGPV--ADELLSLGAV-----SVETARQVTEASDIIFIMVPDT-----PQVEEVLFGE 76 (292)
T ss_pred HHHHHHHHHHHH-CCCeEEEEeCCHh--HHHHHHcCCe-----ecCCHHHHHhcCCEEEEeCCCh-----HHHHHHHcCC
Confidence 366777788777 4888888876531 1111111100 00122 4467899999999964 5556655321
Q ss_pred ccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 86 GGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 86 ~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
..+. ....+||.+.-.+|. ...+...+.+.+..+|..+++-++.
T Consensus 77 ~g~~-~~~~~g~ivvd~sT~------~p~~~~~~~~~~~~~G~~~vdaPVs 120 (292)
T PRK15059 77 NGCT-KASLKGKTIVDMSSI------SPIETKRFARQVNELGGDYLDAPVS 120 (292)
T ss_pred cchh-ccCCCCCEEEECCCC------CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 1000 122345544332221 1234567778888889888876554
No 182
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=29.64 E-value=1.7e+02 Score=23.40 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
+-++.+++.+++ .|.++++++..+.... ...++.+.|.++...+-.++. .+.+..+++.+
T Consensus 19 ~s~~~i~~al~~-~g~~~~~i~~~~~~~~-----------------~~~~~~~~D~v~~~~~g~~ge-~~~~~~~le~~ 78 (299)
T PRK14571 19 RSGERVKKALEK-LGYEVTVFDVDEDFLK-----------------KVDQLKSFDVVFNVLHGTFGE-DGTLQAILDFL 78 (299)
T ss_pred HHHHHHHHHHHH-cCCeEEEEccCchHHH-----------------HhhhccCCCEEEEeCCCCCCC-ccHHHHHHHHc
Confidence 346788888988 5999999987642110 012344567777666554322 24445555544
No 183
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=29.51 E-value=1.2e+02 Score=23.85 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEe
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLG 66 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivig 66 (192)
+.-+.-.+.+.+.+++. |+++..++..+ ...+.|.++|+|+++
T Consensus 44 ~~~~~y~~~~~~af~~l-G~~v~~l~~~~--------------------d~~~~l~~ad~I~v~ 86 (233)
T PRK05282 44 QSWDDYTAKVAEALAPL-GIEVTGIHRVA--------------------DPVAAIENAEAIFVG 86 (233)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEEeccch--------------------hhHHHHhcCCEEEEC
No 184
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=29.39 E-value=2.7e+02 Score=21.64 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=45.7
Q ss_pred Cce--EEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHH-HHHHHhccccccccCCCC
Q 029479 21 GVE--AKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFK-AFLDATGGLWRSQQLAGK 97 (192)
Q Consensus 21 g~~--v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k-~fld~~~~~~~~~~l~gK 97 (192)
..+ +.++++.+..+ +++ |.|....+++.+||.+|. ++.+|.+- ...+.+. + +|-
T Consensus 21 ~~~~~v~~~~~p~~l~-efI---------d~pee~Lp~i~~~Dl~I~------y~lHPDl~~~l~~~~~------e-~g~ 77 (217)
T PF02593_consen 21 DFCRSVIVYEIPEDLP-EFI---------DDPEEYLPKIPEADLLIA------YGLHPDLTYELPEIAK------E-AGV 77 (217)
T ss_pred CCCceEEEEeCCcccc-ccc---------cChHHHccCCCCCCEEEE------eccCchhHHHHHHHHH------H-cCC
Confidence 445 77788876322 111 122222345999998885 23344433 2333331 2 455
Q ss_pred cEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 98 PAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 98 ~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
++.++.+. .+. ......+.+.+...|+.++-+-
T Consensus 78 kavIvp~~--~~~--~g~~~~lk~~~e~~gi~~~~P~ 110 (217)
T PF02593_consen 78 KAVIVPSE--SPK--PGLRRQLKKQLEEFGIEVEFPK 110 (217)
T ss_pred CEEEEecC--CCc--cchHHHHHHHHHhcCceeecCc
Confidence 55554443 322 1224478888888998776543
No 185
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=29.35 E-value=1.3e+02 Score=27.33 Aligned_cols=61 Identities=25% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhcCCc-eEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHH
Q 029479 4 HVEKLAEEIQKGAASVEGV-EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fl 82 (192)
+|..+|.....-+.++ |+ -||+..|.+.. ..-=..+|++.+=+|+--++-|..+|.|+
T Consensus 162 ~~~e~a~~llpYl~el-G~T~IELMPv~e~p--------------------~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 162 GYFELAIELLPYLKEL-GITHIELMPVAEHP--------------------GDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred CHHHHHHHHhHHHHHh-CCCEEEEcccccCC--------------------CCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 5788999999999995 87 57888887631 23456799999999999999999999999
Q ss_pred HHh
Q 029479 83 DAT 85 (192)
Q Consensus 83 d~~ 85 (192)
|.+
T Consensus 221 D~a 223 (628)
T COG0296 221 DAA 223 (628)
T ss_pred HHH
Confidence 997
No 186
>PRK08655 prephenate dehydrogenase; Provisional
Probab=29.22 E-value=2.5e+02 Score=24.24 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.|...++..+.+ .|.+|.+++............. ... ......+.+.++|.||++.|.. .+..+++.+.
T Consensus 11 ~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~-gv~---~~~~~~e~~~~aDvVIlavp~~------~~~~vl~~l~ 79 (437)
T PRK08655 11 GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKEL-GVE---YANDNIDAAKDADIVIISVPIN------VTEDVIKEVA 79 (437)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHc-CCe---eccCHHHHhccCCEEEEecCHH------HHHHHHHHHH
Confidence 477788888887 4888888875431111111110 110 0001135578999999999973 4456666664
No 187
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.12 E-value=1.9e+02 Score=19.68 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhcc
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~ 87 (192)
+|-.+.+.+++ .|.++.+++-.+. ........||.+++-.|.-...-.-.+...++-..
T Consensus 13 ia~r~~ra~r~-~Gi~tv~v~s~~d-------------------~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~- 71 (110)
T PF00289_consen 13 IAVRIIRALRE-LGIETVAVNSNPD-------------------TVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIAR- 71 (110)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEEGGG-------------------TTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHH-
T ss_pred HHHHHHHHHHH-hCCcceeccCchh-------------------cccccccccccceecCcchhhhhhccHHHHhhHhh-
Confidence 46778888888 4998888876541 12467888999887764443222233344444432
Q ss_pred ccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 88 LWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 88 ~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
.. . +....++.+.-.+ -..+.+.+...|+.++++.
T Consensus 72 ----~~---g---~~~i~pGyg~lse--~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 72 ----KE---G---ADAIHPGYGFLSE--NAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp ----HT---T---ESEEESTSSTTTT--HHHHHHHHHHTT-EESSS-
T ss_pred ----hh---c---CcccccccchhHH--HHHHHHHHHHCCCEEECcC
Confidence 11 2 2223322222223 3367777778999998753
No 188
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=29.02 E-value=1.7e+02 Score=24.40 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCC
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETL 33 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~ 33 (192)
+|.+...+..+++.+++ .|.++.++++..+.
T Consensus 254 ~Gs~~~~a~eA~~~L~~-~Gi~v~vi~~~~l~ 284 (352)
T PRK07119 254 YGTSARIAKSAVDMARE-EGIKVGLFRPITLW 284 (352)
T ss_pred cCccHHHHHHHHHHHHH-cCCeEEEEeeceec
Confidence 57888888888888887 59999999987653
No 189
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=29.01 E-value=70 Score=23.69 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=27.5
Q ss_pred hhHHhhcCEEEEecc---cC--CCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 54 PNELAEADGILLGFP---TR--FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ivigsP---~y--~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
.++..++|.|||... .. ...-.+.+..|+.+.. -++|.++.++++
T Consensus 64 ~~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 113 (195)
T cd03138 64 LADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQH-------ANGATVAAACTG 113 (195)
T ss_pred ccccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHH-------HcCCEEEEecHH
Confidence 345678999999442 11 2233566777777653 356777666654
No 190
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.94 E-value=1.6e+02 Score=26.95 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCCceEEEEEcCCCCCH---HHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 9 AEEIQKGAASVEGVEAKLWQVPETLSE---DVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 9 a~~i~~~~~~~~g~~v~~~~l~~~~~~---~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
+..+++.+++ .|.++..+.+-+..+. ..+. ....++.++|.|||.||. -++.|++.+
T Consensus 15 a~~la~~L~~-~G~~vi~~Pli~i~p~~~~~~l~------------~~l~~L~~yd~iIFTS~n-------AV~~~~~~l 74 (656)
T PRK06975 15 SAALAAQLAA-AGLDVLDFPLLDIAPVADDAPLR------------AALARLSDYALVVFVSPN-------AVDRALARL 74 (656)
T ss_pred HHHHHHHHHH-cCCCEEEcccEEeeCCCChHHHH------------HHHHhCCCCCEEEEECHH-------HHHHHHHHH
Confidence 4566777777 4877766554432110 0000 013567899999999985 556677765
Q ss_pred c
Q 029479 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 75 ~ 75 (656)
T PRK06975 75 D 75 (656)
T ss_pred H
Confidence 4
No 191
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.94 E-value=1.8e+02 Score=22.04 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=16.1
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHH
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKA 80 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~ 80 (192)
.+.|.+||+|+|+- |+.+-.++.
T Consensus 75 ~~~l~~ad~I~~~G----G~~~~~~~~ 97 (210)
T cd03129 75 VARLLEADGIFVGG----GNQLRLLSV 97 (210)
T ss_pred HHHHhhCCEEEEcC----CcHHHHHHH
Confidence 57899999999974 444444444
No 192
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=28.38 E-value=3.1e+02 Score=21.99 Aligned_cols=110 Identities=13% Similarity=0.215 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHHHhcc
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~ 87 (192)
|...++..+.+ .|.+|.++|............ ...... ...+.+.++|.||+..|.. ..++..+.....
T Consensus 12 mG~~mA~~l~~-~G~~V~v~d~~~~~~~~~~~~-g~~~~~----s~~~~~~~aDvVi~~vp~~-----~~~~~vl~~~~~ 80 (296)
T PRK15461 12 MGSPMASNLLK-QGHQLQVFDVNPQAVDALVDK-GATPAA----SPAQAAAGAEFVITMLPNG-----DLVRSVLFGENG 80 (296)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHc-CCcccC----CHHHHHhcCCEEEEecCCH-----HHHHHHHcCccc
Confidence 56677777777 488998888654211111111 100000 1135578999999999974 245555433211
Q ss_pred ccccccC-CCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCcc
Q 029479 88 LWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 88 ~~~~~~l-~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~ 136 (192)
+. ..+ +|+.+ ...+. ....+...+...+...|..+++-++.
T Consensus 81 i~--~~l~~g~lv---id~sT---~~p~~~~~l~~~l~~~g~~~ldapV~ 122 (296)
T PRK15461 81 VC--EGLSRDALV---IDMST---IHPLQTDKLIADMQAKGFSMMDVPVG 122 (296)
T ss_pred Hh--hcCCCCCEE---EECCC---CCHHHHHHHHHHHHHcCCcEEEccCC
Confidence 11 112 34433 22211 11234557777888889888876654
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.35 E-value=52 Score=24.46 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
.|-|. +|.+++..+-. .|..|.+++..++ +........++........+.++|.+||==-
T Consensus 58 ~GKTh-La~ai~~~~~~-~g~~v~f~~~~~L-----~~~l~~~~~~~~~~~~~~~l~~~dlLilDDl 117 (178)
T PF01695_consen 58 TGKTH-LAVAIANEAIR-KGYSVLFITASDL-----LDELKQSRSDGSYEELLKRLKRVDLLILDDL 117 (178)
T ss_dssp SSHHH-HHHHHHHHHHH-TT--EEEEEHHHH-----HHHHHCCHCCTTHCHHHHHHHTSSCEEEETC
T ss_pred HHHHH-HHHHHHHHhcc-CCcceeEeecCce-----eccccccccccchhhhcCccccccEeccccc
Confidence 46777 56666655555 4889999998763 1111111111111113678999999998653
No 194
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=28.33 E-value=65 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.222 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029479 171 LAQAFHQGKYFAGITKK 187 (192)
Q Consensus 171 ~e~~~~lg~~la~~~~~ 187 (192)
...+.+||+||+++||-
T Consensus 108 EADa~EFGERiaELAKi 124 (151)
T PF06554_consen 108 EADAQEFGERIAELAKI 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56689999999999973
No 195
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=28.31 E-value=67 Score=24.24 Aligned_cols=47 Identities=19% Similarity=0.061 Sum_probs=30.0
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
..-++||.+++--|+ +..+...+++++ ...-+-|.+..++++...+|
T Consensus 71 ~sPR~ADillVeG~V-----T~~m~~~l~~~~----e~~p~pK~VIAvGaCA~~GG 117 (181)
T PRK14817 71 FSPRQADLLMVVGTV-----NCKQAPILQRVY----EQMADPKWVMAFGVCASSGG 117 (181)
T ss_pred CCCcceeEEEEEecC-----CccchHHHHHHH----HHcccCCEEEEeccccccCC
Confidence 456789999887776 344455555554 12345678888888765543
No 196
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=28.28 E-value=63 Score=23.50 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=25.3
Q ss_pred HhhcCEEEEeccc---CCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 57 LAEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 57 l~~aD~ivigsP~---y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
..++|.|+|.... +.....+.+..|+.+.. -++|+++.++++
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~~ic~G 105 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQE-------SKGKLVAAICAA 105 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHH-------HCCCEEEEEChh
Confidence 5679999986532 11123456777776653 356777666653
No 197
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=28.16 E-value=4.5e+02 Score=25.23 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH---hhcCEEEEecccCCCCch---
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL---AEADGILLGFPTRFGMMA--- 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l---~~aD~ivigsP~y~~~~~--- 75 (192)
+|..++|.+.|.+..+.. .-+++-+...-..+.+ .+|+... ..++ .....|.+-||-|.++..
T Consensus 94 fGG~~kL~~aI~~~~~~~---~P~~I~V~tTC~~elI-------GDDi~~v-~~~~~~~~~~pvi~v~tpGF~gs~~~G~ 162 (917)
T PRK14477 94 FGGEKKLYRAILELAERY---QPKAVFVYATCVTALT-------GDDVEAV-CKAAAEKVGIPVIPVNTPGFIGDKNIGN 162 (917)
T ss_pred eCcHHHHHHHHHHHHHhc---CCCEEEEECCchHHHh-------ccCHHHH-HHHHHHhhCCcEEEEECCCccCchhhHH
Confidence 577889999999888763 3344444432111111 1222211 1222 356788889999877654
Q ss_pred -HHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 76 -AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 76 -~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
..++.+++.+........-..+.+-+++.+.+. |. +..+...|...|+.++.
T Consensus 163 ~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~~-gd----~~elk~lL~~~Gi~v~~ 215 (917)
T PRK14477 163 RLAGEALLKHVIGTAEPEVTTPYDINLIGEYNIA-GD----LWGMLPLFDRLGIRVLS 215 (917)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCCc-ch----HHHHHHHHHHcCCeEEE
Confidence 455666666542111112234556677765442 22 34677778888998764
No 198
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.07 E-value=4.1e+02 Score=23.19 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH---hhcCEEEEecccCCCCch---
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL---AEADGILLGFPTRFGMMA--- 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l---~~aD~ivigsP~y~~~~~--- 75 (192)
+|..++|.+.|.+..+.. . -+++-+...-..+++ .+|+... ..++ .....|.+-+|-|.++..
T Consensus 101 fGg~~kL~~~I~ei~~~~-~--P~~I~V~tTC~~~lI-------GdDi~~v-~~~~~~~~~~pvi~v~t~Gf~g~~~~G~ 169 (475)
T PRK14478 101 FGGEKKLFKAIDEIIEKY-A--PPAVFVYQTCVVALI-------GDDIDAV-CKRAAEKFGIPVIPVNSPGFVGNKNLGN 169 (475)
T ss_pred eCCHHHHHHHHHHHHHhc-C--CCEEEEeCCChHHHh-------ccCHHHH-HHHHHHhhCCCEEEEECCCcccchhhhH
Confidence 588899999999988763 2 234444332111111 1222111 1222 257788888888877543
Q ss_pred -HHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 76 -AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 76 -~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
..++.+++.+........-..+.+-+++...+. +. +..+.+.|...|+.++.
T Consensus 170 ~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~-gd----~~elk~lL~~~Gl~v~~ 222 (475)
T PRK14478 170 KLAGEALLDHVIGTVEPEDTTPYDINILGEYNLA-GE----LWQVKPLLDRLGIRVVA 222 (475)
T ss_pred HHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCC-CC----HHHHHHHHHHcCCeEEE
Confidence 345555654421100111224556677765443 22 34788888889998874
No 199
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.02 E-value=3.8e+02 Score=22.88 Aligned_cols=117 Identities=18% Similarity=0.115 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH--hhcCEEEEecccCCCCchHH--
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLGFPTRFGMMAAQ-- 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~aD~ivigsP~y~~~~~~~-- 77 (192)
+|..++|.+.|.+..+.. .-+++-+...-..+.+ .+|+. ....++ ...+.|.+-+|-|.++...-
T Consensus 68 ~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~I-------GdDi~-~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~ 136 (427)
T cd01971 68 FGGEDRLRELIKSTLSII---DADLFVVLTGCIAEII-------GDDVG-AVVSEFQEGGAPIVYLETGGFKGNNYAGHE 136 (427)
T ss_pred eCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHHh-------hcCHH-HHHHHhhhcCCCEEEEECCCcCcccccHHH
Confidence 466788888888877652 2234444332111111 12221 112233 34689999999998765433
Q ss_pred --HHHHHHHhccccccc-cCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 78 --FKAFLDATGGLWRSQ-QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 78 --~k~fld~~~~~~~~~-~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
++.+++.+.. .. .-..+.+-+++............+..+.+.|...|+.+..
T Consensus 137 ~a~~al~~~~~~---~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 137 IVLKAIIDQYVG---QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred HHHHHHHHHhcc---CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 5555555431 11 1223445566643111110011245788888889988853
No 200
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=27.68 E-value=1.2e+02 Score=22.92 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=30.3
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
..-++||.+++.-| ++..|...+.+++ ...-+-|.+..++++...+|
T Consensus 69 ~SPR~ADillVtG~-----VT~~m~~~l~r~y----e~~p~pK~VIAvGsCA~~GG 115 (183)
T PRK14815 69 FSPRQADVMIVAGT-----VTYKMALAVRRIY----DQMPEPKWVIAMGACASSGG 115 (183)
T ss_pred CCCccccEEEEeCc-----CchhhHHHHHHHH----HhCCCCCEEEEeccccccCC
Confidence 34567888888644 4566666666665 23346688888888765543
No 201
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=27.68 E-value=2.6e+02 Score=25.97 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
+|++-..|..+++.|++ .|++++++|+.-..|-+. +...+.+.+.+.||..==-+.|++-..+..+
T Consensus 575 ~G~mv~~Al~AA~~L~~-~GI~vtVIdlr~ikPLD~-------------e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~ 640 (701)
T PLN02225 575 YGAMVQNCLHAHSLLSK-LGLNVTVADARFCKPLDI-------------KLVRDLCQNHKFLITVEEGCVGGFGSHVAQF 640 (701)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCH-------------HHHHHHHhhcCeEEEEcCCCCCchHHHHHHH
Confidence 67888888888888888 599999999987643110 0123566778888777655568888888887
Q ss_pred HHHh
Q 029479 82 LDAT 85 (192)
Q Consensus 82 ld~~ 85 (192)
+-..
T Consensus 641 l~~~ 644 (701)
T PLN02225 641 IALD 644 (701)
T ss_pred HHhc
Confidence 7553
No 202
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=27.63 E-value=74 Score=24.83 Aligned_cols=43 Identities=5% Similarity=-0.154 Sum_probs=28.4
Q ss_pred HHhhcCEEEEec---ccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 56 ELAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 56 ~l~~aD~ivigs---P~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
+..++|+|+|-- |.+...-.+.++.++..+. -+||+++.+|.+
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~-------~~gK~iaAIChg 136 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIY-------ANGGVVAAVCHG 136 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 478999988843 4555555677888877764 245666666553
No 203
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.60 E-value=2.6e+02 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.3
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
+.+.++|.||++.|.+ .+..+++.+.
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~ 98 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELA 98 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHH
Confidence 4578999999999964 6777777774
No 204
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=27.60 E-value=1.1e+02 Score=21.54 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=32.7
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
..-+.++|++|+....-...-...++.|+..+.. ...+.++.++++-
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK 116 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRT-----ASKHMPGVLVGNK 116 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 3567889999999877654445667778777642 2246788887774
No 205
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=27.54 E-value=2.2e+02 Score=22.20 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=25.5
Q ss_pred HHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEec-ccC
Q 029479 12 IQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF-PTR 70 (192)
Q Consensus 12 i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigs-P~y 70 (192)
+...+++ .|++++++.+.+.. ....++.++|+|||.- +.|
T Consensus 15 ~~~al~~-aG~~v~~v~~~~~~------------------~~~~~l~~~d~liipGG~~~ 55 (238)
T cd01740 15 MAYAFEL-AGFEAEDVWHNDLL------------------AGRKDLDDYDGVVLPGGFSY 55 (238)
T ss_pred HHHHHHH-cCCCEEEEeccCCc------------------cccCCHhhCCEEEECCCCCc
Confidence 4555666 48899988876521 0124578999988754 444
No 206
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.54 E-value=74 Score=20.57 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEec
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 67 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigs 67 (192)
..+.+.|++ .|.+|. ++.. ..++..+|++|+.-
T Consensus 11 s~v~~~L~~-~GyeVv--~l~~----------------------~~~~~~~daiVvtG 43 (80)
T PF03698_consen 11 SNVKEALRE-KGYEVV--DLEN----------------------EQDLQNVDAIVVTG 43 (80)
T ss_pred hHHHHHHHH-CCCEEE--ecCC----------------------ccccCCcCEEEEEC
Confidence 357788888 587664 5443 25688899999753
No 207
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=27.14 E-value=1.6e+02 Score=26.80 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCC-CChhHHhhcCEEEEecccC
Q 029479 4 HVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPT-ITPNELAEADGILLGFPTR 70 (192)
Q Consensus 4 nT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~~l~~aD~ivigsP~y 70 (192)
||...++.+.+.+++ .|.++++ +..... ...+ .+.+++.+||.||+..-+-
T Consensus 178 ht~mAae~L~~aA~~-~g~~i~v-E~~g~~--------------g~~~~lt~~~i~~Ad~Viia~d~~ 229 (631)
T PRK09765 178 HTYMAAEYLEKAGRK-LGVNVYV-EKQGAN--------------GIEGRLTADQLNSATACIFAAEVA 229 (631)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------CCCCCCCHHHHHhCCEEEEeecCc
Confidence 677777888888888 4876642 222110 0111 2368999999999987653
No 208
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=27.08 E-value=2.1e+02 Score=19.59 Aligned_cols=63 Identities=27% Similarity=0.374 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCCCCHH-HhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHH
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPETLSED-VLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQF 78 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~-~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~ 78 (192)
+..-++...+.+++. |++++++.+.+....+ +...- ....+=.+-|||++-.|....--...+
T Consensus 43 S~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~i----------~~lN~D~~V~GIlvq~PLP~~i~~~~i 106 (117)
T PF00763_consen 43 SISYVRSKQKAAEKL-GIEFELIELPEDISEEELLELI----------EKLNEDPSVHGILVQLPLPKHIDERKI 106 (117)
T ss_dssp HHHHHHHHHHHHHHH-T-EEEEEEE-TTSSHHHHHHHH----------HHHHH-TT-SEEEEESSSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCceEEEECCCCcCHHHHHHHH----------HHHhCCCCCCEEEEcCCCCCCccHHHH
Confidence 344566777777775 8999999986643322 21100 001222345899999999544333333
No 209
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=27.03 E-value=2e+02 Score=21.38 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCC-CHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHHH
Q 029479 20 EGVEAKLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 20 ~g~~v~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fld 83 (192)
.|.++.++...++. ..+.++. ..++|..||.| |+|=.+....-..+...++
T Consensus 29 p~l~l~~~~~~el~~~~~~~~~------------~~~aia~ADii-~~smlF~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 29 PGLELSVFAAAELERDPEALEE------------CEAAIARADII-FGSMLFIEDHVRPLLPALE 80 (164)
T ss_pred CCeEEEEEeHHHhhcChHHHHH------------HHHHHHhCCEE-EeehhhhHHHHHHHHHHHH
Confidence 48899999998873 2222221 14889999965 5665555544444444444
No 210
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=26.93 E-value=2.1e+02 Score=22.63 Aligned_cols=14 Identities=29% Similarity=0.264 Sum_probs=11.8
Q ss_pred hhHHhhcCEEEEec
Q 029479 54 PNELAEADGILLGF 67 (192)
Q Consensus 54 ~~~l~~aD~ivigs 67 (192)
.+.|.+||+|+|+-
T Consensus 77 ~~~l~~ad~I~~~G 90 (250)
T TIGR02069 77 IALLSNATGIFFTG 90 (250)
T ss_pred HHHHhhCCEEEEeC
Confidence 46799999999973
No 211
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.93 E-value=1e+02 Score=23.35 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=20.9
Q ss_pred CcEEEEEecCC--CCCCcchHHHHHHHHHHHcCCEE
Q 029479 97 KPAGIFYSTGS--QGGGQETTPLTAITQLVHHGMIF 130 (192)
Q Consensus 97 K~~~~~~~~g~--~~g~~~~~~~~~~~~l~~~g~~v 130 (192)
|+++++++-|= ..||.|+.++++...+...|+.+
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 46677777553 35666666667766666555543
No 212
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=26.85 E-value=1.5e+02 Score=20.32 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=33.2
Q ss_pred HHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH---hhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 11 EIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL---AEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 11 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l---~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
.++..+++ .|+++++++.... ... .+++ .+.|.|.|.+.+++ .. .++.+++++.
T Consensus 7 ~~aa~l~~-~g~~v~~~~~~~~--~~~----------------~~~~~~~~~pdiv~~S~~~~~--~~-~~~~~~~~ik 63 (127)
T cd02068 7 YLAAVLED-AGFIVAEHDVLSA--DDI----------------VEDIKELLKPDVVGISLMTSA--IY-EALELAKIAK 63 (127)
T ss_pred HHHHHHHH-CCCeeeecCCCCH--HHH----------------HHHHHHhcCCCEEEEeecccc--HH-HHHHHHHHHH
Confidence 45566666 4888888775431 111 2333 58899999875553 33 6677777774
No 213
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=26.44 E-value=2.9e+02 Score=23.43 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=43.8
Q ss_pred ChhHHhhcCEEEEecccCCCCchHHH-HHH-HHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEE
Q 029479 53 TPNELAEADGILLGFPTRFGMMAAQF-KAF-LDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 130 (192)
Q Consensus 53 ~~~~l~~aD~ivigsP~y~~~~~~~~-k~f-ld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~v 130 (192)
+.+.+.+....|.-+|-++...-++. -.. +...+. ....+.||+++++|.+ .... .+.+.+..+||.+
T Consensus 73 D~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~--~g~~L~gktvGIIG~G-----~IG~---~vA~~l~a~G~~V 142 (378)
T PRK15438 73 DEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER--DGFSLHDRTVGIVGVG-----NVGR---RLQARLEALGIKT 142 (378)
T ss_pred CHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc--CCCCcCCCEEEEECcC-----HHHH---HHHHHHHHCCCEE
Confidence 45678888888999998775533321 111 111111 1246899999999883 1111 5667778899998
Q ss_pred ec
Q 029479 131 VP 132 (192)
Q Consensus 131 v~ 132 (192)
+.
T Consensus 143 ~~ 144 (378)
T PRK15438 143 LL 144 (378)
T ss_pred EE
Confidence 75
No 214
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.27 E-value=1.1e+02 Score=22.99 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=10.2
Q ss_pred hHHhhcCEEEEec
Q 029479 55 NELAEADGILLGF 67 (192)
Q Consensus 55 ~~l~~aD~ivigs 67 (192)
+++..+|+|||--
T Consensus 33 ~~l~~~d~lilPG 45 (201)
T PRK13152 33 KDLQKADKLLLPG 45 (201)
T ss_pred HHHcCCCEEEECC
Confidence 5678899999933
No 215
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=26.26 E-value=1.7e+02 Score=19.35 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhhhcCCc--eEEEEEcCC
Q 029479 3 GHVEKLAEEIQKGAASVEGV--EAKLWQVPE 31 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~--~v~~~~l~~ 31 (192)
|++..+...+.+.+++ .|+ +++...+.+
T Consensus 13 gSS~~ik~kve~~l~~-~gi~~~~~~~~v~~ 42 (93)
T COG3414 13 GSSTMIKMKVEEVLKE-LGIDVDVEQCAVDE 42 (93)
T ss_pred cHHHHHHHHHHHHHHH-cCCCceeeeEEecc
Confidence 5666777888899988 487 555555544
No 216
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=26.17 E-value=3.2e+02 Score=21.42 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHH
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fl 82 (192)
|..+-+-+.+...+-+..| .+++||....|.+-+ .+..++-...+++...-.-.--..++..+
T Consensus 114 GDvHdIGk~iV~~ml~~aG--fevidLG~dvP~e~f---------------ve~a~e~k~d~v~~SalMTttm~~~~~vi 176 (227)
T COG5012 114 GDVHDIGKNIVATMLEAAG--FEVIDLGRDVPVEEF---------------VEKAKELKPDLVSMSALMTTTMIGMKDVI 176 (227)
T ss_pred ccHHHHHHHHHHHHHHhCC--cEEEecCCCCCHHHH---------------HHHHHHcCCcEEechHHHHHHHHHHHHHH
Confidence 3444455444444433245 556788764443322 24444444444544444333334589999
Q ss_pred HHhccccccccCCCCcEEE
Q 029479 83 DATGGLWRSQQLAGKPAGI 101 (192)
Q Consensus 83 d~~~~~~~~~~l~gK~~~~ 101 (192)
|.|. ...+++|....
T Consensus 177 E~L~----eeGiRd~v~v~ 191 (227)
T COG5012 177 ELLK----EEGIRDKVIVM 191 (227)
T ss_pred HHHH----HcCCccCeEEe
Confidence 9986 45677776633
No 217
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=26.01 E-value=2.3e+02 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=9.2
Q ss_pred HHhhcCEEEEec
Q 029479 56 ELAEADGILLGF 67 (192)
Q Consensus 56 ~l~~aD~ivigs 67 (192)
++.++|+|||..
T Consensus 38 ~l~~~D~lvipG 49 (219)
T PRK03619 38 DLDGVDAVVLPG 49 (219)
T ss_pred CCCCCCEEEECC
Confidence 467889988875
No 218
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.97 E-value=92 Score=22.11 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=28.1
Q ss_pred hcCEEEEecccCC-CC---chHHHHHHHHHhccccccccCCCCcEEEEEe
Q 029479 59 EADGILLGFPTRF-GM---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 59 ~aD~ivigsP~y~-~~---~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~ 104 (192)
..+.||+|-|... |+ ....++.|.+.+. ..+.+.++.++-=
T Consensus 51 ~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~-----~~~~~ipV~~~DE 95 (135)
T PF03652_consen 51 QIDGIVVGLPLNMDGSESEQARRVRKFAEELK-----KRFPGIPVILVDE 95 (135)
T ss_dssp CECEEEEEEEBBCTSSC-CCHHHHHHHHHHHH-----HHH-TSEEEEEEC
T ss_pred CCCEEEEeCCcccCCCccHHHHHHHHHHHHHH-----HhcCCCcEEEECC
Confidence 5699999999975 33 4567888888885 3345667655543
No 219
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=25.95 E-value=39 Score=27.23 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=12.0
Q ss_pred HHhhcCEEEEeccc
Q 029479 56 ELAEADGILLGFPT 69 (192)
Q Consensus 56 ~l~~aD~ivigsP~ 69 (192)
.-..+|++|++|||
T Consensus 162 ~~~r~DGliVsTPT 175 (281)
T COG0061 162 ESFRGDGLIVSTPT 175 (281)
T ss_pred EEEecCEEEEEcCC
Confidence 34579999999998
No 220
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=25.90 E-value=1.9e+02 Score=21.95 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=29.0
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
..-++||.+++--++=.. +-+.++...+.+ -+-|.+..++++...+|
T Consensus 70 ~sPr~aDvllV~G~vt~~-~~~~l~~~~e~m--------p~pk~VIA~GaCA~~GG 116 (183)
T PRK06411 70 ASPRQADLMIVAGTLTNK-MAPALRRLYDQM--------PEPKWVISMGSCANSGG 116 (183)
T ss_pred CCCCceeEEEEEeCCCcc-chHHHHHHHHHc--------CcCCeEEEEecccccCC
Confidence 345669999987777333 334444444433 35688888988765543
No 221
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=25.87 E-value=3.9e+02 Score=22.24 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=26.3
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 108 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~ 108 (192)
+.+.+||.||++.|. ..+..+++++. ..++.+...+-.+-|-.
T Consensus 78 eal~~ADiIIlAVPs------~~i~~vl~~l~-----~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 78 EAAKGADILVFVIPH------QFLEGICKQLK-----GHVKPNARAISCIKGLE 120 (342)
T ss_pred HHHhcCCEEEEECCh------HHHHHHHHHHH-----hhcCCCCEEEEEeCCcc
Confidence 457889999999997 45566666664 22333333344455543
No 222
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=25.67 E-value=1.1e+02 Score=22.17 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=26.9
Q ss_pred HHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCC
Q 029479 56 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 109 (192)
Q Consensus 56 ~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~ 109 (192)
.-++||.+++--|+ +..++..+.+++ +..-+-|.+..++++...+
T Consensus 54 sPr~aDvllVtG~v-----t~~~~~~l~~~~----e~~p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 54 SPRQADVMIVAGTV-----TKKMAPALRRLY----DQMPEPKWVISMGACANSG 98 (145)
T ss_pred CCCcceEEEEecCC-----cHHHHHHHHHHH----HhccCCceEEEecceeecC
Confidence 34558888886555 444455555554 1223567888888875543
No 223
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=25.60 E-value=1.1e+02 Score=22.54 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=26.1
Q ss_pred hHHhhcCEEEEec-ccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 55 NELAEADGILLGF-PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 55 ~~l~~aD~ivigs-P~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
.+..++|.|||.. +.......+.+..|+.+.. -++|.++.++++
T Consensus 60 ~~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~-------~~~~~i~aic~g 104 (185)
T cd03136 60 EDAPPLDYLFVVGGLGARRAVTPALLAWLRRAA-------RRGVALGGIDTG 104 (185)
T ss_pred cccCCCCEEEEeCCCCccccCCHHHHHHHHHHH-------hcCCEEEEEcHH
Confidence 4567899999832 2222334566777776653 256666666654
No 224
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=25.46 E-value=82 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCC
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 32 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~ 32 (192)
|.|.|...++.+.+.|++ .|.||-++.....
T Consensus 192 mfGvTTp~V~~~~~~Le~-~G~Ev~VFHAtG~ 222 (403)
T PF06792_consen 192 MFGVTTPCVDAIRERLEE-EGYEVLVFHATGT 222 (403)
T ss_pred CCCCcHHHHHHHHHHHHh-cCCeEEEEcCCCC
Confidence 789999999999999999 5999999988764
No 225
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=25.17 E-value=1.1e+02 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=23.1
Q ss_pred ccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 92 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 92 ~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
..|.||++++++.. . + ...+..++...||+++..+
T Consensus 331 ~~L~GKrv~i~~g~--~----~--~~~~~~~l~ELGmevv~~g 365 (466)
T TIGR01282 331 PRLEGKTVMLYVGG--L----R--PRHVIGAFEDLGMEVIGTG 365 (466)
T ss_pred HhcCCCEEEEECCC--C----c--HHHHHHHHHHCCCEEEEEe
Confidence 46899998887531 1 1 1244456788999998544
No 226
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=24.87 E-value=1.3e+02 Score=21.33 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=31.5
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
..-+.++|++|+....-...-...++.+++.+. ....++++.++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~-----~~~~~~p~ivv~nK 113 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELR-----EYRPEIPCIVVANK 113 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHH-----HhCCCCcEEEEEEC
Confidence 456889999999777644433345667777764 22356788888874
No 227
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=24.86 E-value=2.8e+02 Score=20.20 Aligned_cols=48 Identities=25% Similarity=0.137 Sum_probs=30.2
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
.-+..+|++|+..-.....-....+..++.+.. ...+.++++.++++-
T Consensus 80 ~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK 127 (184)
T smart00178 80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNK 127 (184)
T ss_pred HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeC
Confidence 457899999998666443223445555665531 124578888888873
No 228
>PRK05665 amidotransferase; Provisional
Probab=24.81 E-value=3.4e+02 Score=21.23 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=16.5
Q ss_pred hHHhhcCEEEE-ecccCCCCchHH---HHHHHHHh
Q 029479 55 NELAEADGILL-GFPTRFGMMAAQ---FKAFLDAT 85 (192)
Q Consensus 55 ~~l~~aD~ivi-gsP~y~~~~~~~---~k~fld~~ 85 (192)
.++.++|+||| |||---+...+- ++.||.++
T Consensus 53 ~~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~ 87 (240)
T PRK05665 53 ADDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKL 87 (240)
T ss_pred CCcccCCEEEECCCCCCccccchHHHHHHHHHHHH
Confidence 35667998877 555433333333 34444443
No 229
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.77 E-value=1.3e+02 Score=22.94 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=11.7
Q ss_pred hhHHhhcCEEEEec
Q 029479 54 PNELAEADGILLGF 67 (192)
Q Consensus 54 ~~~l~~aD~ivigs 67 (192)
.+++.++|+|||.-
T Consensus 36 ~~~l~~~d~lIlpG 49 (209)
T PRK13146 36 PDAVAAADRVVLPG 49 (209)
T ss_pred HHHhcCCCEEEECC
Confidence 47799999999955
No 230
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=24.75 E-value=4.4e+02 Score=22.41 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCC---ChhHHhhcCEEEEecccCCCC-chH-
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI---TPNELAEADGILLGFPTRFGM-MAA- 76 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~---~~~~l~~aD~ivigsP~y~~~-~~~- 76 (192)
+|..++|.++|.+..+.. - +.+++-+-..-..+.+ .+|+... ..++..+...|.+-+|-|.+. ...
T Consensus 69 fGg~~~L~~aI~~~~~~~-p-~p~~i~V~~tc~~~li-------GdDi~~v~~~~~~~~~~~~vi~v~tpgf~g~~~~~G 139 (415)
T cd01977 69 FGGEKKLKKNIIEAFKEF-P-DIKRMTVYTTCTTALI-------GDDIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKG 139 (415)
T ss_pred eccHHHHHHHHHHHHHhC-C-CCcEEEEECCCchhhh-------cCCHHHHHHHHHHhcCCCeEEEEeCCCcCCcchhHH
Confidence 466788888888877652 1 2333443322111111 1222111 012222367899999999874 332
Q ss_pred ---HHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEec
Q 029479 77 ---QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 132 (192)
Q Consensus 77 ---~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~ 132 (192)
.++.+++.+........-..+.+-+++..-+. +. +..+.+.|...|+.++.
T Consensus 140 ~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~-~d----~~ei~~lL~~~Gl~v~~ 193 (415)
T cd01977 140 HHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQ-GD----TEVLQKYFERMGIQVLS 193 (415)
T ss_pred HHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCc-cc----HHHHHHHHHHcCCeEEE
Confidence 23455665542111112234566677654432 22 34788888899999863
No 231
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=24.73 E-value=1.8e+02 Score=18.47 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEE
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKL 26 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~ 26 (192)
.|.+..|+..+.+.+.+ .+..+++
T Consensus 11 ~~tS~~l~~~i~~~~~~-~~i~~~v 34 (89)
T cd05566 11 VATSTVVASKVKELLKE-NGIDVKV 34 (89)
T ss_pred ccHHHHHHHHHHHHHHH-CCCceEE
Confidence 35677888999999977 4765444
No 232
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=24.59 E-value=2.7e+02 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHH
Q 029479 166 PSELELAQAFHQGKYFA 182 (192)
Q Consensus 166 p~~~~~e~~~~lg~~la 182 (192)
++..+++.++.+++++.
T Consensus 39 rh~~Ele~A~~iak~lg 55 (222)
T COG0603 39 RHRKELEAAKELAKKLG 55 (222)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 44788999999988775
No 233
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=24.43 E-value=4e+02 Score=21.86 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCC-ChhHHhhcCEEEEecccC
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTI-TPNELAEADGILLGFPTR 70 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~-~~~~l~~aD~ivigsP~y 70 (192)
.|..+++.++.. .|.++.+.+-............ ..... ..+.+.+||.|++..|.+
T Consensus 13 ~mG~AiA~~L~~-sG~~Viv~~~~~~~~~~~a~~~------Gv~~~s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 13 SQGHAQALNLRD-SGLNVIVGLRKGGASWKKATED------GFKVGTVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred HHHHHHHHHHHH-CCCeEEEEECcChhhHHHHHHC------CCEECCHHHHHhcCCEEEEeCCcH
Confidence 378899999988 4877644332221110111110 11001 134578999999999954
No 234
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=24.37 E-value=1.8e+02 Score=21.95 Aligned_cols=47 Identities=17% Similarity=0.057 Sum_probs=29.0
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
..-++||.+++.-|+ +-.|+..+.+++. ..-+-|.+..++++...+|
T Consensus 77 ~sPRhADvllVtG~V-----T~~m~~~l~~~~e----~~p~pK~VIAvGsCA~~GG 123 (182)
T PRK14816 77 ASPRQADMIMVCGTI-----TNKMAPVLKRLYD----QMADPKYVIAVGGCAVSGG 123 (182)
T ss_pred CCCCcceEEEEecCC-----cchhHHHHHHHHH----hcCCCCEEEEeccccccCC
Confidence 344568888776554 5555555555541 2345688888888766544
No 235
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=24.15 E-value=1e+02 Score=21.05 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=27.8
Q ss_pred ccCCCCcEEEEEecCCCCCC-cchHHHHHHHHHHHcCCEEecCCc
Q 029479 92 QQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 92 ~~l~gK~~~~~~~~g~~~g~-~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
..++||++.++-++...+-. +-..+..+.+.+...|+.|++.+-
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFPc 61 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFPC 61 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEB
T ss_pred HHcCCCEEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeeeh
Confidence 46889998887776432111 123455666666678999987653
No 236
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=23.73 E-value=1.9e+02 Score=20.60 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=30.7
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecC
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 106 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g 106 (192)
...+.++|++|+..-.-...-...++.++..+.. ...+.++++.++++--
T Consensus 61 ~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK~ 110 (167)
T cd04161 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANKQ 110 (167)
T ss_pred HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeCC
Confidence 3557899999997443332223344556655531 2345789998888843
No 237
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=23.60 E-value=4.5e+02 Score=22.13 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=21.6
Q ss_pred CCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 94 LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 94 l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
++|+++++++.+....|........+...+..+|+.++
T Consensus 168 l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~ 205 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 205 (357)
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 67888887766543333212223445555667788764
No 238
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=23.46 E-value=2.3e+02 Score=21.51 Aligned_cols=14 Identities=43% Similarity=0.413 Sum_probs=12.4
Q ss_pred hhHHhhcCEEEEec
Q 029479 54 PNELAEADGILLGF 67 (192)
Q Consensus 54 ~~~l~~aD~ivigs 67 (192)
.+.|.+||+|+|+-
T Consensus 75 ~~~l~~ad~I~l~G 88 (212)
T cd03146 75 LDALLEADVIYVGG 88 (212)
T ss_pred HHHHhcCCEEEECC
Confidence 58899999999975
No 239
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=23.42 E-value=1.7e+02 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.8
Q ss_pred hhHHhhcCEEEEec
Q 029479 54 PNELAEADGILLGF 67 (192)
Q Consensus 54 ~~~l~~aD~ivigs 67 (192)
.+++.++|+|||.-
T Consensus 33 ~~~L~~~DgLILPG 46 (248)
T PLN02832 33 PEQLEGVSGLIIPG 46 (248)
T ss_pred HHHhccCCEEEeCC
Confidence 36788999999976
No 240
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=23.13 E-value=3.7e+02 Score=21.03 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=38.0
Q ss_pred EEEecccCCC-CchHHHHHHHHHhccccccccCC--CCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCC
Q 029479 63 ILLGFPTRFG-MMAAQFKAFLDATGGLWRSQQLA--GKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 63 ivigsP~y~~-~~~~~~k~fld~~~~~~~~~~l~--gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~ 134 (192)
+.+++.+|.+ .+...+..|+... ++ +|+++.+=+++...... ..++..++.|..+|+.+....
T Consensus 4 L~Ls~~~~~~~~~~~~~~~~i~n~--------l~g~~~~i~FIPtAs~~~~~~-~Yv~k~~~~l~~lg~~v~~L~ 69 (224)
T COG3340 4 LLLSSSTFSFEDVLEHFLPFIANF--------LQGKRKTIAFIPTASVDSEDD-FYVEKVRNALAKLGLEVSELH 69 (224)
T ss_pred EEecCCCcccchhhhhhhHHHHHH--------hcCCCceEEEEecCccccchH-HHHHHHHHHHHHcCCeeeeee
Confidence 5566655532 2334444444332 33 45887777766544332 357788888999999997653
No 241
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.92 E-value=4.2e+02 Score=21.62 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCC
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPET 32 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~ 32 (192)
+..-++...+.+++. |++++++++.+.
T Consensus 46 s~~Yv~~k~k~a~~~-Gi~~~~~~l~~~ 72 (296)
T PRK14188 46 SQVYVRSKGKQTKEA-GMASFEHKLPAD 72 (296)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 445567777778774 888888888764
No 242
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=22.91 E-value=5.2e+02 Score=22.60 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCC-CCCChhH----HhhcCEEEEecccCCCCchHHHHHH
Q 029479 7 KLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDV-PTITPNE----LAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~-~~~~~~~----l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
.|...++..+.+ .|.+|.++|........... .+... ... ...+.++ +..+|.|++..|. ...+..+
T Consensus 9 ~MG~~mA~nL~~-~G~~V~v~drt~~~~~~l~~-~~~~g-~~~~~~~s~~e~v~~l~~~dvIil~v~~-----~~~v~~V 80 (467)
T TIGR00873 9 VMGSNLALNMAD-HGFTVSVYNRTPEKTDEFLA-EHAKG-KKIVGAYSIEEFVQSLERPRKIMLMVKA-----GAPVDAV 80 (467)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHh-hccCC-CCceecCCHHHHHhhcCCCCEEEEECCC-----cHHHHHH
Confidence 367788888887 59999998875421111111 10000 000 1112333 3468989988776 3456667
Q ss_pred HHHhccccccccC-CCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCccCCCCCccchhcccCCCCCcceecC
Q 029479 82 LDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 82 ld~~~~~~~~~~l-~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
++.+.+ .+ +|+.+ ...+.. ... ........+...|..+++.++.-+. . +...|.....
T Consensus 81 i~~l~~-----~L~~g~iI---ID~gns--~~~-~t~~~~~~l~~~gi~fvdapVsGG~-----~----gA~~G~~im~- 139 (467)
T TIGR00873 81 INQLLP-----LLEKGDII---IDGGNS--HYP-DTERRYKELKAKGILFVGSGVSGGE-----E----GARKGPSIMP- 139 (467)
T ss_pred HHHHHh-----hCCCCCEE---EECCCc--CHH-HHHHHHHHHHhcCCEEEcCCCCCCH-----H----HHhcCCcCCC-
Confidence 776642 23 34433 233221 112 2234455677889999987765321 0 1112221110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q 029479 161 DGSRQPSELELAQAFHQGKYFAGI 184 (192)
Q Consensus 161 ~~~~~p~~~~~e~~~~lg~~la~~ 184 (192)
| -+++..++++.+-+.++..
T Consensus 140 -G---G~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 140 -G---GSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -C---CCHHHHHHHHHHHHHHhhh
Confidence 1 2466788888777777654
No 243
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.87 E-value=49 Score=26.86 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=10.9
Q ss_pred hhcCEEEEeccc
Q 029479 58 AEADGILLGFPT 69 (192)
Q Consensus 58 ~~aD~ivigsP~ 69 (192)
-.+|+||++|||
T Consensus 175 ~~~DGlIVSTPT 186 (287)
T PRK14077 175 YFGDGVIVATPA 186 (287)
T ss_pred EEcCEEEEeCCC
Confidence 469999999998
No 244
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.86 E-value=3.9e+02 Score=21.24 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhcCCc----eEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHHH
Q 029479 7 KLAEEIQKGAASVEGV----EAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 7 ~la~~i~~~~~~~~g~----~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~fl 82 (192)
.|+.+++.++.+ .|. ++.+++................... ...+.+.++|.||++.|. ..+..++
T Consensus 12 ~MG~aia~~L~~-~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~----~~~e~~~~aDiIiLavkP------~~~~~vl 80 (272)
T PRK12491 12 NMGIAMIGGMIN-KNIVSPDQIICSDLNVSNLKNASDKYGITITT----NNNEVANSADILILSIKP------DLYSSVI 80 (272)
T ss_pred HHHHHHHHHHHH-CCCCCCceEEEECCCHHHHHHHHHhcCcEEeC----CcHHHHhhCCEEEEEeCh------HHHHHHH
Confidence 478888998877 353 3444443211001111101100011 112456899999999995 4455555
Q ss_pred HHh
Q 029479 83 DAT 85 (192)
Q Consensus 83 d~~ 85 (192)
+.+
T Consensus 81 ~~l 83 (272)
T PRK12491 81 NQI 83 (272)
T ss_pred HHH
Confidence 554
No 245
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=22.83 E-value=1e+02 Score=24.05 Aligned_cols=30 Identities=10% Similarity=-0.205 Sum_probs=20.0
Q ss_pred HhhcCEEEEec---ccCCCCchHHHHHHHHHhc
Q 029479 57 LAEADGILLGF---PTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 57 l~~aD~ivigs---P~y~~~~~~~~k~fld~~~ 86 (192)
..++|+|+|-- |.|...-.+.+..++..+.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~ 126 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAI 126 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHH
Confidence 46899998843 4555555566777776664
No 246
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=22.69 E-value=5e+02 Score=22.33 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH--hhcCEEEEecccCCCCchHHHHHHH
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL--AEADGILLGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~aD~ivigsP~y~~~~~~~~k~fl 82 (192)
.+..++.+.+.+++ .++++...+.......+.... .+++ .++|+||+..++|..+ +.++
T Consensus 21 ~~~~~~~~~~~l~~-~~~~vv~~~~~~~~~~~~~~~-------------~~~~~~~~~d~ii~~~~tf~~~-----~~~~ 81 (452)
T cd00578 21 VEEYAREVADLLNE-LPVEVVDKPEVTGTPDEARKA-------------AEEFNEANCDGLIVWMHTFGPA-----KMWI 81 (452)
T ss_pred HHHHHHHHHHHHhc-CCceEEecCcccCCHHHHHHH-------------HHHHhhcCCcEEEEcccccccH-----HHHH
Confidence 45667788888876 365554444322112211111 1112 2689999999987544 2222
Q ss_pred HHhccccccccCCCCcEEEEEecCCCC-------CCcchHHHHHHHHHHHcCCE
Q 029479 83 DATGGLWRSQQLAGKPAGIFYSTGSQG-------GGQETTPLTAITQLVHHGMI 129 (192)
Q Consensus 83 d~~~~~~~~~~l~gK~~~~~~~~g~~~-------g~~~~~~~~~~~~l~~~g~~ 129 (192)
.-+. . -++|+.+++....+. ....-....+...|...|+.
T Consensus 82 ~~~~------~-~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~ 128 (452)
T cd00578 82 AGLS------E-LRKPVLLLATQFNREIPDFMNLNQSACGLREFGNILARLGIP 128 (452)
T ss_pred HHHH------h-cCCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHHcCCc
Confidence 2221 2 257887777754211 01111334555566666654
No 247
>PRK03094 hypothetical protein; Provisional
Probab=22.64 E-value=1.1e+02 Score=19.76 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEec
Q 029479 10 EEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGF 67 (192)
Q Consensus 10 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigs 67 (192)
..|.+.|++ .|.+|+ +|.. ..+...+|++|+.-
T Consensus 11 s~i~~~L~~-~GYeVv--~l~~----------------------~~~~~~~Da~VitG 43 (80)
T PRK03094 11 TDVQQALKQ-KGYEVV--QLRS----------------------EQDAQGCDCCVVTG 43 (80)
T ss_pred HHHHHHHHH-CCCEEE--ecCc----------------------ccccCCcCEEEEeC
Confidence 357888888 587664 5543 13467788888866
No 248
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=22.63 E-value=2.8e+02 Score=19.51 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=39.2
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
...+.++|++|+....-...--..++.++..+.. ....+.++.++++--.-.................++..++
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEE----HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHH----hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 4567899999998876443333345555555531 1234677777776321111111123344444555666544
No 249
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=22.61 E-value=5.8e+02 Score=23.10 Aligned_cols=18 Identities=6% Similarity=-0.232 Sum_probs=14.4
Q ss_pred HHhhcCEEEEecccCCCC
Q 029479 56 ELAEADGILLGFPTRFGM 73 (192)
Q Consensus 56 ~l~~aD~ivigsP~y~~~ 73 (192)
+-.+.|++|+.+|+|.++
T Consensus 73 k~~~Vd~tItvtpcWcyg 90 (587)
T TIGR01089 73 SRENVGLTITVTPCWCYG 90 (587)
T ss_pred hhcCCCEEEEecceecCc
Confidence 345689999999999655
No 250
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=22.50 E-value=97 Score=23.51 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCceEEEEEcCCCCC---HHHhhhcCCCCCCCCCCCChhHHh--hcCEEEEeccc
Q 029479 11 EIQKGAASVEGVEAKLWQVPETLS---EDVLGKMGAGPKSDVPTITPNELA--EADGILLGFPT 69 (192)
Q Consensus 11 ~i~~~~~~~~g~~v~~~~l~~~~~---~~~~~~~~~~~~~d~~~~~~~~l~--~aD~ivigsP~ 69 (192)
.+++.+++ .|.++..+.+-+..+ ...+. ...+.+. .+|.|||.||.
T Consensus 2 ~l~~~l~~-~G~~~~~~P~i~~~~~~~~~~l~------------~~l~~l~~~~~d~viftS~~ 52 (231)
T PF02602_consen 2 ELAALLRA-LGAEVIELPLIEIEPLPDLASLE------------AALEQLPPGNYDWVIFTSPN 52 (231)
T ss_dssp HHHHHHHH-TTEEEEEEESEEEEECCHHHHHH------------HHHHHHTGCCSSEEEESSHH
T ss_pred HHHHHHHH-CCCcEEEECCEEEEeCCCHHHHH------------HHHHhcccCCCCEEEEECHH
Confidence 46677777 488877766654422 11110 0135555 99999999985
No 251
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=22.43 E-value=1.8e+02 Score=25.99 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=11.0
Q ss_pred hHHhhcCEEEEec
Q 029479 55 NELAEADGILLGF 67 (192)
Q Consensus 55 ~~l~~aD~ivigs 67 (192)
+++.++|+|||.-
T Consensus 40 ~~l~~~D~lIlpG 52 (538)
T PLN02617 40 EDILNADRLIFPG 52 (538)
T ss_pred hhhccCCEEEECC
Confidence 5688999999965
No 252
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=22.42 E-value=2e+02 Score=21.81 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=31.3
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCCC
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG 110 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g 110 (192)
...-+++|.+|+. |.++..|-..+.+++ .+...-|-+..++++...+|
T Consensus 70 r~SPRQaDvmIva-----Gt~t~Kmap~lr~~Y----dQMPePK~VIsMGsCa~~GG 117 (194)
T COG0377 70 RASPRQADLMIVA-----GTLTNKMAPALRRVY----DQMPEPKWVISMGSCANSGG 117 (194)
T ss_pred CCCcccccEEEEe-----ccchHHHHHHHHHHH----HhCCCCcEEEEecccccCCC
Confidence 4566788988875 455555555555554 23346688888888876543
No 253
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=22.39 E-value=2.3e+02 Score=23.72 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=31.1
Q ss_pred HhhcCEEEEec--ccCCCCchHHHHHHHHHhccc---------c--------ccccCCCCcEEEEEecCCC
Q 029479 57 LAEADGILLGF--PTRFGMMAAQFKAFLDATGGL---------W--------RSQQLAGKPAGIFYSTGSQ 108 (192)
Q Consensus 57 l~~aD~ivigs--P~y~~~~~~~~k~fld~~~~~---------~--------~~~~l~gK~~~~~~~~g~~ 108 (192)
+.+.+|+||+| |..-|..+.-.+.++..-..+ + .+-.+.|+.+++++..|.+
T Consensus 28 imd~~G~IIaS~d~~Rig~~HegA~~~~~~~~~~~i~~~~~~~~~g~k~GiN~Pi~~~~~viGvIgItG~p 98 (385)
T PRK11477 28 VMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEP 98 (385)
T ss_pred EECCCCEEEecCChHHcccccHHHHHHHhcCCeeeecHHHHhhcCCCCcCceeeEEECCEEEEEEecCCCh
Confidence 44556777776 355577776666555332110 0 1124789999999987755
No 254
>PRK00865 glutamate racemase; Provisional
Probab=22.28 E-value=2.8e+02 Score=21.92 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecCCc
Q 029479 95 AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 95 ~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~~~ 135 (192)
.++++++|-|+ -|| .+.+..+.+.+-...+.+++..-
T Consensus 4 ~~~~IgvfDSG---iGG-Ltvl~~i~~~lp~~~~iY~~D~~ 40 (261)
T PRK00865 4 MNAPIGVFDSG---VGG-LTVLREIRRLLPDEHIIYVGDTA 40 (261)
T ss_pred CCCeEEEEECC---ccH-HHHHHHHHHHCCCCCEEEEecCC
Confidence 45788888884 234 34556666655456666666543
No 255
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=22.15 E-value=2.1e+02 Score=23.62 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=38.6
Q ss_pred hhHHhhcCEEEEecccCCCCchHH--HHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHH-cCCE
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQ--FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH-HGMI 129 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~--~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~-~g~~ 129 (192)
.+.|.+||.||+|--.++-++-|. ++.+-+.+. .-+.+++.+.-.+.-++.....++....+.+.. .|..
T Consensus 167 l~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~------~s~a~kV~v~N~~tq~gEt~g~~~~dhv~~i~~~~g~~ 239 (310)
T TIGR01826 167 VEAIREADLIILGPGSLYTSIIPNLLVPEIAEALR------ESKAPKVYVCNLMTQPGETDGFSLEDHVDALHRHLGKP 239 (310)
T ss_pred HHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHH------hCCCCEEEEeCCCCCCCCCCCCCHHHHHHHHHHHcCCC
Confidence 689999999999988887776542 233333332 123455544333333333333455555555544 3543
No 256
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=22.13 E-value=3.5e+02 Score=24.53 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc-cCCCCchHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP-TRFGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP-~y~~~~~~~~k~ 80 (192)
+|++-..|-.+++.|++ .|++++++|+....|-+. +.....+.....||+.-= ...|++-+.+..
T Consensus 503 ~G~~v~~al~Aa~~L~~-~gi~~~VId~~~lkPlD~-------------e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~ 568 (617)
T TIGR00204 503 FGTLVPEALEVAESLNE-KGIEATVVDARFVKPLDE-------------ELILEIAASHEKLVTVEENAIMGGAGSAVLE 568 (617)
T ss_pred cCHHHHHHHHHHHHHHh-cCCCEEEEecCcCCcCCH-------------HHHHHHHhhcCeEEEEECCCCccChHHHHHH
Confidence 57777777777888877 599999999987533110 001234445555444433 335777777666
Q ss_pred HHHH
Q 029479 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 569 ~l~~ 572 (617)
T TIGR00204 569 FLMD 572 (617)
T ss_pred HHHh
Confidence 6643
No 257
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.80 E-value=46 Score=26.77 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=11.6
Q ss_pred HhhcCEEEEeccc
Q 029479 57 LAEADGILLGFPT 69 (192)
Q Consensus 57 l~~aD~ivigsP~ 69 (192)
--.+|++|++|||
T Consensus 155 ~~~~DGlIVsTPT 167 (271)
T PRK01185 155 TFKADGVIVATPT 167 (271)
T ss_pred EEEeeEEEEeCCC
Confidence 3689999999998
No 258
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.80 E-value=2.7e+02 Score=18.94 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHH-hhcCEEEEecccCCCCchHHHHHHHHH
Q 029479 6 EKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNEL-AEADGILLGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 6 ~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l-~~aD~ivigsP~y~~~~~~~~k~fld~ 84 (192)
.+.+..+...+.+ .|.++-.++......... .+ + ...+++ ...|.+++..|- ..+-.+++.
T Consensus 13 ~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~--~~-------y--~sl~e~p~~iDlavv~~~~------~~~~~~v~~ 74 (116)
T PF13380_consen 13 GKFGYRVLRNLKA-AGYEVYPVNPKGGEILGI--KC-------Y--PSLAEIPEPIDLAVVCVPP------DKVPEIVDE 74 (116)
T ss_dssp TSHHHHHHHHHHH-TT-EEEEESTTCSEETTE--E--------B--SSGGGCSST-SEEEE-S-H------HHHHHHHHH
T ss_pred CChHHHHHHHHHh-CCCEEEEECCCceEECcE--Ee-------e--ccccCCCCCCCEEEEEcCH------HHHHHHHHH
Confidence 3456777777777 487777666554211000 00 0 123434 688999999884 677777777
Q ss_pred hccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecC
Q 029479 85 TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
+. .+ |-+.++|-++ .. ..++.+.+..+|+.++++
T Consensus 75 ~~------~~-g~~~v~~~~g----~~----~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 75 AA------AL-GVKAVWLQPG----AE----SEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HH------HH-T-SEEEE-TT----S------HHHHHHHHHTT-EEEES
T ss_pred HH------Hc-CCCEEEEEcc----hH----HHHHHHHHHHcCCEEEeC
Confidence 74 22 4444444443 11 226777778899999965
No 259
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.77 E-value=3.5e+02 Score=24.99 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k~f 81 (192)
+|++-..|..+++.|++ .|++++++|+.-..|-+. ......+.....||..=--+-+++-..+..+
T Consensus 551 ~G~~v~~Al~Aa~~L~~-~GI~~~VId~~~lkPlD~-------------~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~ 616 (677)
T PLN02582 551 YGTAVQSCLAAASLLER-HGLSATVADARFCKPLDR-------------ALIRSLAKSHEVLITVEEGSIGGFGSHVAQF 616 (677)
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEEcCcCCCCCH-------------HHHHHHhhhCCEEEEECCCCCCcHHHHHHHH
Confidence 67888888888888887 599999999986533110 0011233445555554444447777776666
Q ss_pred HHH
Q 029479 82 LDA 84 (192)
Q Consensus 82 ld~ 84 (192)
+-.
T Consensus 617 l~~ 619 (677)
T PLN02582 617 MAL 619 (677)
T ss_pred HHh
Confidence 644
No 260
>PRK05670 anthranilate synthase component II; Provisional
Probab=21.71 E-value=3.4e+02 Score=20.07 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=15.3
Q ss_pred HHHHHHHhhhcCCceEEEEEcCC
Q 029479 9 AEEIQKGAASVEGVEAKLWQVPE 31 (192)
Q Consensus 9 a~~i~~~~~~~~g~~v~~~~l~~ 31 (192)
...+.+-+++ .|.+++++....
T Consensus 12 ~~~i~~~l~~-~g~~~~v~~~~~ 33 (189)
T PRK05670 12 TYNLVQYLGE-LGAEVVVYRNDE 33 (189)
T ss_pred HHHHHHHHHH-CCCcEEEEECCC
Confidence 3456666777 488998888653
No 261
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=21.69 E-value=5.1e+02 Score=22.07 Aligned_cols=62 Identities=8% Similarity=-0.065 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHhhhcCCceEEEEEcCCCCC--HHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecccCCCCchHHHH
Q 029479 2 YGHVEKLAEEIQKGAASVEGVEAKLWQVPETLS--EDVLGKMGAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFK 79 (192)
Q Consensus 2 ~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP~y~~~~~~~~k 79 (192)
+|.+..-++.+.+.+++ .|..|-++.+.-+.| .+.+ .+-+..++.|++.-=.+..+..++|.
T Consensus 269 ~GS~~~~~keav~~LR~-~G~kVGllri~~~rPFP~~~i---------------~~~l~~~k~ViVvE~n~s~g~~g~l~ 332 (394)
T PRK08367 269 MGSLAGTLKEFVDKLRE-EGYKVGAAKLTVYRPFPVEEI---------------RALAKKAKVLAFLEKNISFGLGGAVF 332 (394)
T ss_pred eCccHHHHHHHHHHHHh-cCCcceeEEEeEecCCCHHHH---------------HHHHccCCEEEEEeCCCCCCCCCcHH
Confidence 58888889999999988 598999998876533 2111 35677889988776665444445553
No 262
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=21.67 E-value=2.2e+02 Score=21.65 Aligned_cols=46 Identities=20% Similarity=-0.009 Sum_probs=29.7
Q ss_pred hHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEecCCCC
Q 029479 55 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG 109 (192)
Q Consensus 55 ~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~ 109 (192)
..-++||.+++.-|+ +..|+..+.+++ ...-+-|.+..++++...+
T Consensus 69 ~sPR~ADvllVtG~V-----T~~m~~~l~~~y----eqmp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 69 FSPRQADMILVLGTI-----TYKMAPVLRQIY----DQMAEPKFVISVGACASSG 114 (186)
T ss_pred CCcccceEEEEeccC-----chhhHHHHHHHH----HhcCCCCeEEEeccccccC
Confidence 445788888886554 555666666665 1233567888888876543
No 263
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=21.60 E-value=1e+02 Score=23.72 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=18.3
Q ss_pred cCEEEEecccCCC-CchHHHHHHHHHh
Q 029479 60 ADGILLGFPTRFG-MMAAQFKAFLDAT 85 (192)
Q Consensus 60 aD~ivigsP~y~~-~~~~~~k~fld~~ 85 (192)
+|.+|+|+|++.. ++-..++.+...+
T Consensus 185 ad~~VvGr~I~~a~dp~~a~~~i~~~i 211 (216)
T PRK13306 185 VKTFIAGRAIRGAADPAAAARAFKDEI 211 (216)
T ss_pred CCEEEECCcccCCCCHHHHHHHHHHHH
Confidence 8999999999854 4445556555554
No 264
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.53 E-value=52 Score=26.96 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=11.1
Q ss_pred hhcCEEEEeccc
Q 029479 58 AEADGILLGFPT 69 (192)
Q Consensus 58 ~~aD~ivigsP~ 69 (192)
-.+|++|++|||
T Consensus 179 ~~~DGlIVsTPT 190 (305)
T PRK02649 179 IAADGVILSTPT 190 (305)
T ss_pred EecCeEEEeCCC
Confidence 589999999998
No 265
>PRK02399 hypothetical protein; Provisional
Probab=21.45 E-value=1.1e+02 Score=26.22 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCceEEEEEcCCC
Q 029479 1 MYGHVEKLAEEIQKGAASVEGVEAKLWQVPET 32 (192)
Q Consensus 1 ~~GnT~~la~~i~~~~~~~~g~~v~~~~l~~~ 32 (192)
|.|.|...++.+.+.|++ .|.|+-++.....
T Consensus 193 mfGvTtp~v~~~~~~Le~-~GyEvlVFHATG~ 223 (406)
T PRK02399 193 MFGVTTPCVQAAREELEA-RGYEVLVFHATGT 223 (406)
T ss_pred cCCCcHHHHHHHHHHHHh-CCCeEEEEcCCCC
Confidence 789999999999999999 5999999988764
No 266
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=21.31 E-value=2.1e+02 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=23.8
Q ss_pred HHhhcCEEEEecccCCCCchHHHHHHHHHh
Q 029479 56 ELAEADGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 56 ~l~~aD~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
+=..+|+|++..|-|+..-...+..|+..+
T Consensus 93 ~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v 122 (290)
T TIGR00683 93 TELGYDCLSAVTPFYYKFSFPEIKHYYDTI 122 (290)
T ss_pred HHhCCCEEEEeCCcCCCCCHHHHHHHHHHH
Confidence 344689999999999876677888887776
No 267
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.19 E-value=55 Score=26.85 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=10.9
Q ss_pred hhcCEEEEeccc
Q 029479 58 AEADGILLGFPT 69 (192)
Q Consensus 58 ~~aD~ivigsP~ 69 (192)
-.+|+||++|||
T Consensus 183 ~~~DGlIVsTPT 194 (306)
T PRK03372 183 FGCDGVLVSTPT 194 (306)
T ss_pred EecCEEEEeCCC
Confidence 478999999998
No 268
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=21.18 E-value=4.3e+02 Score=21.10 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcC-CCC---CC----CCC-CCCh-hHHhhcCEEEEecccCCCCchHH
Q 029479 8 LAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMG-AGP---KS----DVP-TITP-NELAEADGILLGFPTRFGMMAAQ 77 (192)
Q Consensus 8 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~-~~~---~~----d~~-~~~~-~~l~~aD~ivigsP~y~~~~~~~ 77 (192)
|...++..+.+ .|.+|.+++....... .+.... ... .. ... ..+. +.+.++|.||+..|.+ .
T Consensus 12 mG~~~a~~L~~-~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~------~ 83 (325)
T PRK00094 12 WGTALAIVLAR-NGHDVTLWARDPEQAA-EINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ------A 83 (325)
T ss_pred HHHHHHHHHHh-CCCEEEEEECCHHHHH-HHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH------H
Confidence 55667777777 4889988886432111 111111 000 00 010 0123 3567999999999973 5
Q ss_pred HHHHHHHhc
Q 029479 78 FKAFLDATG 86 (192)
Q Consensus 78 ~k~fld~~~ 86 (192)
+..+++.+.
T Consensus 84 ~~~v~~~l~ 92 (325)
T PRK00094 84 LREVLKQLK 92 (325)
T ss_pred HHHHHHHHH
Confidence 666666664
No 269
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=21.11 E-value=3e+02 Score=20.14 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=11.7
Q ss_pred hHHhhcCEEEEeccc
Q 029479 55 NELAEADGILLGFPT 69 (192)
Q Consensus 55 ~~l~~aD~ivigsP~ 69 (192)
.++.++|+|||.---
T Consensus 42 ~~~~~~dgvil~Gg~ 56 (188)
T cd01741 42 PDLDDYDGLVILGGP 56 (188)
T ss_pred CCcccCCEEEECCCC
Confidence 568899999997643
No 270
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=20.98 E-value=3.9e+02 Score=22.68 Aligned_cols=71 Identities=14% Similarity=-0.000 Sum_probs=43.4
Q ss_pred ChhHHhhcCEEEEecccCCCCchHHH-HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 53 TPNELAEADGILLGFPTRFGMMAAQF-KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 53 ~~~~l~~aD~ivigsP~y~~~~~~~~-k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
+.+.+.+....|.-+|-++...-++. -..+=.+... ....+.||+++++|.+ ... ..+.+.+..+||.++
T Consensus 73 D~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-~g~~l~gktvGIIG~G-----~IG---~~va~~l~a~G~~V~ 143 (381)
T PRK00257 73 DLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-EGVDLAERTYGVVGAG-----HVG---GRLVRVLRGLGWKVL 143 (381)
T ss_pred CHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-cCCCcCcCEEEEECCC-----HHH---HHHHHHHHHCCCEEE
Confidence 45678888888888998875533321 1111111111 1246899999998873 111 156667778999887
Q ss_pred c
Q 029479 132 P 132 (192)
Q Consensus 132 ~ 132 (192)
.
T Consensus 144 ~ 144 (381)
T PRK00257 144 V 144 (381)
T ss_pred E
Confidence 5
No 271
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=20.94 E-value=2.4e+02 Score=23.24 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=37.3
Q ss_pred hhHHhhcCEEEEecccCCCCchHHH--HHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHH-HcC
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQF--KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV-HHG 127 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~--k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~-~~g 127 (192)
.+.|.+||.||+|--.++-++-|.+ ..+-+.+. .-+.|++.+--....++.....++....+.+. ..+
T Consensus 170 ~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~------~s~a~kV~v~N~~~~~get~~~~~~d~v~~i~~~~~ 240 (308)
T cd07187 170 LEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIR------ASKAPKVYICNLMTQPGETDGFTLSDHVRALLRHLG 240 (308)
T ss_pred HHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHH------hCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999888887765432 23333332 22456665544444433222223444444443 344
No 272
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=20.77 E-value=1.7e+02 Score=20.92 Aligned_cols=46 Identities=4% Similarity=-0.067 Sum_probs=30.8
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEe
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 104 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~ 104 (192)
...+..+|++|+..-.....--..++.|+..+.. ...+.++.++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~piiiv~n 112 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCGNIPIVLCGN 112 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEE
Confidence 3456789999998776554444556777777742 223788877777
No 273
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=20.70 E-value=1.5e+02 Score=24.81 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhhhcCCceEEEEEcCCCCCHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc-cCCCCch--HHHH
Q 029479 3 GHVEKLAEEIQKGAASVEGVEAKLWQVPETLSEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP-TRFGMMA--AQFK 79 (192)
Q Consensus 3 GnT~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP-~y~~~~~--~~~k 79 (192)
|+.+.-...+.+.+++ |.+++++++.++.. +-.-+-.-.+||| +..-.+| .+..
T Consensus 22 G~p~~~~~~~~~~l~~--~~~v~lv~~del~d---------------------d~~v~~v~~~GsP~v~~E~lp~g~e~~ 78 (353)
T PF06032_consen 22 GDPYIGRLMAEQALRE--GGPVRLVDPDELPD---------------------DDLVVPVGMMGSPTVSVEKLPSGDEAL 78 (353)
T ss_dssp S-HHHHHHHHTT-SBT--TS-EEEE-GGG--S---------------------SE-EEEEEEEE-HHHTT-SS-HHHHHH
T ss_pred ccHHHHHHHHHHHHhC--CCCeEEEEHhHcCC---------------------CCcEeEEEEeCCChHHhccCCCchHHH
Confidence 5555555555566655 66999999876422 1122234567899 4455553 3556
Q ss_pred HHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEecC
Q 029479 80 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 133 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv~~ 133 (192)
..++.+. +..||++..+.+.- -|+. .++.-+... ...|..+|+-
T Consensus 79 ~a~~~le------~~~g~~~~av~~~E--iGG~-N~~~pl~~A-a~~GlPvvDa 122 (353)
T PF06032_consen 79 RAVEALE------KYLGRKIDAVIPIE--IGGS-NGLNPLLAA-AQLGLPVVDA 122 (353)
T ss_dssp HHHHHHH------HHTT--EEEEE-SS--SSCC-HHHHHHHHH-HHHT-EEESB
T ss_pred HHHHHHH------HhhCCCccEEeehh--cCcc-chhHHHHHH-HHhCCCEEcC
Confidence 6666663 34455555444421 1222 223333321 3578888864
No 274
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.67 E-value=4.7e+02 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCCC
Q 029479 5 VEKLAEEIQKGAASVEGVEAKLWQVPET 32 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v~~~~l~~~ 32 (192)
+..-++...+.+++. |++++++++.+.
T Consensus 46 s~~Yv~~k~k~~~~~-Gi~~~~~~l~~~ 72 (284)
T PRK14179 46 SQVYVRNKERSALAA-GFKSEVVRLPET 72 (284)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEECCCC
Confidence 345567777888884 999999999864
No 275
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=20.66 E-value=2e+02 Score=20.49 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=31.4
Q ss_pred hhHHhhcCEEEEecccCCCCchHHHHHHHHHhccccccccCCCCcEEEEEec
Q 029479 54 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ivigsP~y~~~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~~~ 105 (192)
...+..+|++|+....-...-...++.++..+.. ...+.++++.++++-
T Consensus 61 ~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 109 (169)
T cd04158 61 KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANK 109 (169)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeC
Confidence 3557899999999776543333455666665531 123566788888874
No 276
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.45 E-value=2.1e+02 Score=22.77 Aligned_cols=29 Identities=24% Similarity=0.122 Sum_probs=22.9
Q ss_pred hhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 58 AEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 58 ~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
..+|+|++..|.|+..-...+..|+..+.
T Consensus 94 ~G~d~v~~~~P~~~~~~~~~l~~~~~~ia 122 (284)
T cd00950 94 AGADAALVVTPYYNKPSQEGLYAHFKAIA 122 (284)
T ss_pred cCCCEEEEcccccCCCCHHHHHHHHHHHH
Confidence 47899999999987655677777777764
No 277
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=20.37 E-value=3.5e+02 Score=21.43 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=16.9
Q ss_pred hHHhhc---CEEEEecccCCCCchHHHHHHHHHh
Q 029479 55 NELAEA---DGILLGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 55 ~~l~~a---D~ivigsP~y~~~~~~~~k~fld~~ 85 (192)
..++.+ |-|+|-||. ++...++.|=++.
T Consensus 179 ~alk~~~~~d~ivfFSPs---gv~~~lq~f~~~~ 209 (260)
T KOG4132|consen 179 HALKECGFIDWIVFFSPS---GVKSSLQYFGDSN 209 (260)
T ss_pred HHHHhcCCcceEEEECcc---hHHHHHHHHHHhc
Confidence 445554 677777775 4555556555554
No 278
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=20.28 E-value=2.1e+02 Score=22.98 Aligned_cols=29 Identities=10% Similarity=0.008 Sum_probs=22.7
Q ss_pred hhcCEEEEecccCCCCchHHHHHHHHHhc
Q 029479 58 AEADGILLGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 58 ~~aD~ivigsP~y~~~~~~~~k~fld~~~ 86 (192)
..+|++++..|.|+..-...+..++..+.
T Consensus 98 ~Gad~v~v~~P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 98 LGYDAISAVTPFYYPFSFEEICDYYREII 126 (293)
T ss_pred cCCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 45799999999997766677777777763
No 279
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=20.26 E-value=5.5e+02 Score=22.25 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=37.9
Q ss_pred hcCEEEEecccCCCCchH----HHHHHHHHhccccccccCCCCcEEEEEecCCCCCCcchHHHHHHHHHHHcCCEEe
Q 029479 59 EADGILLGFPTRFGMMAA----QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 131 (192)
Q Consensus 59 ~aD~ivigsP~y~~~~~~----~~k~fld~~~~~~~~~~l~gK~~~~~~~~g~~~g~~~~~~~~~~~~l~~~g~~vv 131 (192)
....|.+.||-|.++... .++.+++.+.. ... ..+.+-+++. +.. ...+..+.+.|...|+.+.
T Consensus 125 ~~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~---~~~-~~~~VNii~~--~~~---~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 125 EVHLIPVHTPSFKGSMVTGYDEAVRSVVKTIAK---KGA-PSGKLNVFTG--WVN---PGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred CCeEEEeeCCCcCCCHHHHHHHHHHHHHHHhcc---cCC-CCCcEEEECC--CCC---hHHHHHHHHHHHHcCCCEE
Confidence 467788899999987654 44555555431 111 2233545542 221 1235688888888998876
No 280
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.18 E-value=59 Score=26.03 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=10.9
Q ss_pred hhcCEEEEeccc
Q 029479 58 AEADGILLGFPT 69 (192)
Q Consensus 58 ~~aD~ivigsP~ 69 (192)
-.+|+||++||+
T Consensus 147 ~~~DGlIVsTPt 158 (264)
T PRK03501 147 FRGDGMVVSTPT 158 (264)
T ss_pred EecCEEEEeCCC
Confidence 469999999998
No 281
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=20.11 E-value=2.9e+02 Score=18.68 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhcCCceE-EEEEcCCCC-CHHHhhhcCCCCCCCCCCCChhHHhhcCEEEEecc
Q 029479 5 VEKLAEEIQKGAASVEGVEA-KLWQVPETL-SEDVLGKMGAGPKSDVPTITPNELAEADGILLGFP 68 (192)
Q Consensus 5 T~~la~~i~~~~~~~~g~~v-~~~~l~~~~-~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ivigsP 68 (192)
++...+.+.+.+++ .|.+. +..-..... ...++ ...+-.++|.||+|+-
T Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~i~--------------~~a~~~~adliV~G~~ 122 (154)
T COG0589 72 AEELLAEAKALAEA-AGVPVVETEVVEGSPSAEEIL--------------ELAEEEDADLIVVGSR 122 (154)
T ss_pred HHHHHHHHHHHHHH-cCCCeeEEEEecCCCcHHHHH--------------HHHHHhCCCEEEECCC
Confidence 45666677777776 36653 332222211 12222 1234448999999997
No 282
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.06 E-value=51 Score=26.82 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=10.9
Q ss_pred hhcCEEEEeccc
Q 029479 58 AEADGILLGFPT 69 (192)
Q Consensus 58 ~~aD~ivigsP~ 69 (192)
-.+|+||++|||
T Consensus 174 ~~~DGlIVsTPT 185 (292)
T PRK01911 174 YWADGLIVATPT 185 (292)
T ss_pred EeeceeEECCCC
Confidence 469999999999
No 283
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.05 E-value=61 Score=25.96 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=11.1
Q ss_pred hhcCEEEEeccc
Q 029479 58 AEADGILLGFPT 69 (192)
Q Consensus 58 ~~aD~ivigsP~ 69 (192)
-.+|++|++||+
T Consensus 146 ~~gDGlIVsTpt 157 (265)
T PRK04885 146 FRGDGLCVSTPT 157 (265)
T ss_pred EEcCEEEEECCC
Confidence 589999999998
Done!