AT3G55490 protein (Arabidopsis thaliana)

STRING 9.05

AT3G55490 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT3G55490	unknown protein; CONTAINS InterPro DOMAIN/s- GINS complex, Psf3 component (InterPro-IPR010492); BEST Arabidopsis thaliana protein match is- TTN10 (TITAN 10) (TAIR-AT1G19080.1); Has 224 Blast hits to 224 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 21 (source- NCBI BLink). (185 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RPB5C	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase; [...] (210 aa)	•	0.921
	NRPB5	NRPB5; DNA binding / DNA-directed RNA polymerase; Non-catalytic subunit common to DNA-dependent [...] (205 aa)	•	0.825
	RPB5D	RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase; [...] (218 aa)	•	0.821
	NRPE5	NRPE5; DNA binding / DNA-directed RNA polymerase; Non-catalytic subunit unique to Nuclear DNA-d [...] (222 aa)	•	0.790
	AT5G40600	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomem [...] (306 aa)	•	0.776
	emb1353	emb1353 (embryo defective 1353); embryo defective 1353 (emb1353); FUNCTIONS IN- molecular_funct [...] (388 aa)	•	0.776
	emb2739	emb2739 (embryo defective 2739); embryo defective 2739 (emb2739); FUNCTIONS IN- molecular_funct [...] (508 aa)	•	0.776
	MEE22	MEE22 (MATERNAL EFFECT EMBRYO ARREST 22); Encodes a novel protein of unknown function that is e [...] (1297 aa)	•	0.776
	emb2204	emb2204 (embryo defective 2204); embryo defective 2204 (emb2204); FUNCTIONS IN- molecular_funct [...] (329 aa)	•	0.776
	emb1745	emb1745 (embryo defective 1745); embryo defective 1745 (emb1745); FUNCTIONS IN- molecular_funct [...] (611 aa)	•	0.776

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: low (27%)

Permalink