BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029480
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9Q|D Chain D, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|H Chain H, The Crystal Structure Of Full Length Human Gins Complex
Length = 220
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 40 SAEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSR 96
AE D V +G+K+ELP WL++ L+ R+ +S+ +P + + R AD VDL
Sbjct: 57 GAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKM 116
Query: 97 CPYFYEFGCKI----APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTK 152
P+FY FG ++ +P D I + LL TF R++ I+ + A S +A L +
Sbjct: 117 GPHFYGFGSQLLHFDSPENAD--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDE 174
Query: 153 EETNLYEAAQSSMAAFKKWRIG 174
E L++ Q + F+ W G
Sbjct: 175 MERGLFQTGQKGLNDFQCWEKG 196
>pdb|2E9X|C Chain C, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|G Chain G, The Crystal Structure Of Human Gins Core Complex
Length = 219
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 41 AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
AE D V +G+K+ELP WL++ L+ R+ +S+ +P + + R AD VDL
Sbjct: 57 AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMG 116
Query: 98 PYFYEFGCKI----APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKE 153
P+FY FG ++ +P D I + LL TF R++ I+ + A S +A L +
Sbjct: 117 PHFYGFGSQLLHFDSPENAD--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEM 174
Query: 154 ETNLYEAAQSSMAAFKKWRIG 174
E L++ Q + F+ W G
Sbjct: 175 ERGLFQTGQKGLNDFQCWEKG 195
>pdb|2EHO|D Chain D, Crystal Structure Of Human Gins Complex
pdb|2EHO|H Chain H, Crystal Structure Of Human Gins Complex
pdb|2EHO|L Chain L, Crystal Structure Of Human Gins Complex
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 41 AEKD-CVDEGAKVELPFWLSQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRC 97
AE D V +G+K+ELP WL++ L+ R+ +S+ +P + + R AD VDL
Sbjct: 54 AETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKXG 113
Query: 98 PYFYEFGCKI----APIVGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKE 153
P+FY FG ++ +P D I + LL TF R++ I + A S +A L +
Sbjct: 114 PHFYGFGSQLLHFDSPENAD--ISQSLLQTFIGRFRRIXDSSQNAYNEDTSALVARLDEX 171
Query: 154 ETNLYEAAQSSMAAFKKWRIG 174
E L++ Q + F+ W G
Sbjct: 172 ERGLFQTGQKGLNDFQCWEKG 192
>pdb|3BVJ|A Chain A, Crystal Structure Of Human Orotidine 5'-monophosphate
Decarboxylase Complexed With Xmp
pdb|3BVJ|B Chain B, Crystal Structure Of Human Orotidine 5'-monophosphate
Decarboxylase Complexed With Xmp
pdb|3G3D|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
5-Fluoro-6-Azido-Ump
pdb|3G3D|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
5-Fluoro-6-Azido-Ump
pdb|3MW7|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-Ump(Produced From
5-Fluoro-6-Amino-Ump)
pdb|3MW7|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-Ump(Produced From
5-Fluoro-6-Amino-Ump)
pdb|4HIB|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N4-Oh
pdb|4HIB|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N4-Oh
pdb|4HKP|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N3-Oxide
pdb|4HKP|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N3-Oxide
Length = 312
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 69 HPVASKLLRLMQKKETNLCLSADVSLA 95
>pdb|3BK0|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Cn-Ump
pdb|3BK0|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Cn-Ump
pdb|3DBP|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Nh2-Ump
pdb|3DBP|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Nh2-Ump
pdb|3MO7|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
2'-Fluoro-6-Iodo-Ump
Length = 279
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 36 HPVASKLLRLMQKKETNLCLSADVSLA 62
>pdb|3G3M|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 5-Fluoro-6-Iodo-Ump
pdb|3MI2|A Chain A, Crystal Structure Of Human Orotidine-5'-Monophosphate
Decarb Complexed With Pyrazofurin Monophosphate
pdb|3MI2|B Chain B, Crystal Structure Of Human Orotidine-5'-Monophosphate
Decarb Complexed With Pyrazofurin Monophosphate
Length = 279
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 36 HPVASKLLRLMQKKETNLCLSADVSLA 62
>pdb|2EAW|A Chain A, Human Ump Synthase (C-Terminal Domain- Orotidine 5'-
Monophosphate Decarboxylase)
pdb|2EAW|B Chain B, Human Ump Synthase (C-Terminal Domain- Orotidine 5'-
Monophosphate Decarboxylase)
pdb|3BGG|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Bmp
pdb|3BGJ|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 6-Iodo-Ump
pdb|3BGJ|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 6-Iodo-Ump
Length = 291
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 48 HPVASKLLRLMQKKETNLCLSADVSLA 74
>pdb|2P1F|A Chain A, Human Ump Synthase (c-terminal Domain-orotidine
5'-monophosphate Decarboxylase)
Length = 291
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 48 HPVASKLLRLMQKKETNLCLSADVSLA 74
>pdb|2QCC|A Chain A, Crystal Structure Of The Orotidine-5'-monophosphate
Decarboxylase Domain Of Human Ump Synthase, Apo Form
pdb|2QCC|B Chain B, Crystal Structure Of The Orotidine-5'-monophosphate
Decarboxylase Domain Of Human Ump Synthase, Apo Form
pdb|2QCD|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To Ump
pdb|2QCG|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Bromo-Ump
pdb|2QCG|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Bromo-Ump
pdb|2QCH|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Iodo-Ump
pdb|2QCH|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Iodo-Ump
pdb|2QCN|A Chain A, Covalent Complex Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase With
6-Iodo-Ump
pdb|2QCN|B Chain B, Covalent Complex Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase With
6-Iodo-Ump
pdb|3EWZ|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|C Chain C, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|D Chain D, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EX1|A Chain A, Human Orotidyl-5'-monophosphate Decarboxylase Soaked With
6-cyano-ump, Converted To Ump
pdb|3EX1|B Chain B, Human Orotidyl-5'-monophosphate Decarboxylase Soaked With
6-cyano-ump, Converted To Ump
pdb|3EX2|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Cyano- Ump
pdb|3EX2|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Cyano- Ump
pdb|3EX3|A Chain A, Human Orotidyl-5'-monophosphate Decarboxylase In Complex
With 6-azido- Ump, Covalent Adduct
pdb|3EX3|B Chain B, Human Orotidyl-5'-monophosphate Decarboxylase In Complex
With 6-azido- Ump, Covalent Adduct
pdb|3EX4|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With Bmp
pdb|3L0K|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Acetyl-Ump
pdb|3L0K|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Acetyl-Ump
pdb|3L0N|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Mercapto-Ump
pdb|3L0N|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Mercapto-Ump
Length = 260
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 17 HPVASKLLRLMQKKETNLCLSADVSLA 43
>pdb|2QCL|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To Omp
pdb|2QCL|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To Omp
pdb|3EWU|A Chain A, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Acetyl-Ump, Covalent
Adduct
pdb|3EWU|B Chain B, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Acetyl-Ump, Covalent
Adduct
pdb|3EWW|A Chain A, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Cyano-Ump, Covalent
Adduct
pdb|3EWW|B Chain B, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Cyano-Ump, Covalent
Adduct
pdb|3EX6|A Chain A, D312n Mutant Of Human Orotidyl-5'-monophosphate
Decarboxylase In Complex With 6-azido-ump, Covalent
Adduct
pdb|3EX6|B Chain B, D312n Mutant Of Human Orotidyl-5'-monophosphate
Decarboxylase In Complex With 6-azido-ump, Covalent
Adduct
Length = 260
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 140 YAVASKFLAVLTKEETNLYEAAQSSMA 166
+ VASK L ++ K+ETNL +A S+A
Sbjct: 17 HPVASKLLRLMQKKETNLCLSADVSLA 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,804,298
Number of Sequences: 62578
Number of extensions: 160617
Number of successful extensions: 264
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)