BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029480
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0UPV4|PSF3_PHANO DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=PSF3 PE=3
SV=1
Length = 179
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 8/169 (4%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQA--- 67
Y+ +D IL + + VP F + G+ + +G+KVELP WL + L L Q+
Sbjct: 4 YYSVDAILTDAQKVPCTFELTVPGLGFLEGNMSGDMKQGSKVELPLWLGEMLALSQSLNT 63
Query: 68 ---VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTF 124
V+++ P+ + + ++AD VDLR+ P+FY+ G +I + + + ++L TF
Sbjct: 64 SSLVTLDPPSALSPRVLNALKADPRTVDLRALAPHFYDLGARILELFEEEKMIEVLSDTF 123
Query: 125 QMRYKDILTKAHT--AAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
+ R I +AH A + F+ L + E L+ AA S A + W
Sbjct: 124 KARAAVIADQAHNPRGALGEGADFMRGLDENERQLFRAAHDSAKAARTW 172
>sp|Q4WQ54|PSF3_ASPFU DNA replication complex GINS protein psf3 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=psf3 PE=3 SV=2
Length = 178
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYL------ 64
Y+D+D IL + + +P F G+ + + + G +++LP WL L +
Sbjct: 3 YYDVDSILTDSQKLPCTFELEVPGLGILEGNPGEDIKAGTRIDLPLWLGVMLSIGARLGT 62
Query: 65 RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTF 124
+ V++++P+ + + ++AD VDLRS P+FY ++ + + + +L++TF
Sbjct: 63 SRLVTLDLPSALSDRVVNALKADPRTVDLRSLAPHFYSLSERVLDLFEEEEMVDVLINTF 122
Query: 125 QMRYKDILTKAHT--AAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
+ R +I AH A + FL L + E L+ A S + W
Sbjct: 123 KKRAAEIADHAHNPKGALGEGADFLRGLDETERQLFRVAHDSARETRIW 171
>sp|Q5RDV0|PSF3_PONAB DNA replication complex GINS protein PSF3 OS=Pongo abelii GN=GINS3
PE=2 SV=1
Length = 216
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 10 KYFDIDEILIEEELVPV-----------VFHKSANGVKVDPSAEKDCVDEGAKVELPFWL 58
+ +D+IL+ E +PV F + + G + D + V +G+K+ELP WL
Sbjct: 18 NFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETD-----NAVPQGSKLELPLWL 72
Query: 59 SQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVG 112
++ L+ R+ +S+ +P + + R AD VDL P+FY FG ++ +P
Sbjct: 73 AKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENA 132
Query: 113 DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
D I + LL TF R++ I+ + A S +A L + E L++ Q+ + F+ W
Sbjct: 133 D--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQIGQNGLNDFQCWE 190
Query: 173 IG 174
G
Sbjct: 191 KG 192
>sp|Q9BRX5|PSF3_HUMAN DNA replication complex GINS protein PSF3 OS=Homo sapiens GN=GINS3
PE=1 SV=1
Length = 216
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 10 KYFDIDEILIEEELVPV-----------VFHKSANGVKVDPSAEKDCVDEGAKVELPFWL 58
+ +D+IL+ E +PV F + + G + D + V +G+K+ELP WL
Sbjct: 18 NFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETD-----NAVPQGSKLELPLWL 72
Query: 59 SQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVG 112
++ L+ R+ +S+ +P + + R AD VDL P+FY FG ++ +P
Sbjct: 73 AKGLFDNKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENA 132
Query: 113 DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
D I + LL TF R++ I+ + A S +A L + E L++ Q + F+ W
Sbjct: 133 D--ISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWE 190
Query: 173 IG 174
G
Sbjct: 191 KG 192
>sp|Q9CY94|PSF3_MOUSE DNA replication complex GINS protein PSF3 OS=Mus musculus GN=Gins3
PE=2 SV=1
Length = 216
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 11 YFDIDEILIEEELVPVVFHK-----SANGVKVDPSAEKDC-VDEGAKVELPFWLSQELY- 63
+ +D+IL+ +E +PV A ++ +E D + +G K+ELP WL++ L+
Sbjct: 19 FLSLDDILMSQEKLPVRVETPMPRLGAFFLERGAGSEPDHPLPQGTKLELPLWLAKGLFD 78
Query: 64 -LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVGDRTIGK 118
R+ +S+ +P + + R ADA VDL P+FY FG ++ +P D I +
Sbjct: 79 HKRRILSVELPKMYQEGWRTVFSADANVVDLHKMGPHFYGFGSQLLHFDSPENAD--ISQ 136
Query: 119 MLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWRIG 174
LL TF R++ I+ + + S +A L + E L++ Q S+ F+ W G
Sbjct: 137 SLLKTFIGRFRRIMDSSQNSYNEDTSALVARLDETERGLFQIGQRSLNDFQSWEKG 192
>sp|Q08E12|PSF3_BOVIN DNA replication complex GINS protein PSF3 OS=Bos taurus GN=GINS3
PE=2 SV=1
Length = 216
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 10 KYFDIDEILIEEELVPV-----------VFHKSANGVKVDPSAEKDCVDEGAKVELPFWL 58
+ +D+IL+ E + V F + G + D + + EG K+ELP WL
Sbjct: 18 NFLSLDDILMSHEKLSVRTEIPMPRLGAFFLDRSGGAETD-----NAIPEGTKLELPLWL 72
Query: 59 SQELY--LRQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKI----APIVG 112
++ L+ R+ +S+ +P + + R ADA VDL P+FY FG ++ +P
Sbjct: 73 AKGLFDNKRRILSVELPKIYQEGWRTVFSADANVVDLHKMGPHFYGFGSQLLHFDSPENA 132
Query: 113 DRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
D I LL TF R++ I+ + A S +A L + E L++ Q + F+ W
Sbjct: 133 D--ISHSLLQTFVGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWE 190
Query: 173 IG 174
G
Sbjct: 191 KG 192
>sp|Q9UTC3|PSF3_SCHPO DNA replication complex GINS protein psf3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=psf3 PE=3 SV=1
Length = 166
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
Y+DID IL E + VP S G+ E V G+KVELPFWL++ L + VSI
Sbjct: 3 YYDIDSILSENQKVPCTSTVSIPGL----GHEGRMVPTGSKVELPFWLAEVLAINSFVSI 58
Query: 71 NVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYKD 130
++PA F+ R ++A+ +V +R ++Y F K+ ++ D ++ ++ L+T + R
Sbjct: 59 HMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLISDDSLVQISLNTLRSRAML 118
Query: 131 ILTKAHTAAYAVA--SKFLAVLTKEETNLYEAAQSSMAAFKKWR 172
I + A+ S+F+ L E ++ + ++ + W+
Sbjct: 119 IADASLNPQGALQQNSQFIEGLDDFEKHILRVSHNAHRSLINWQ 162
>sp|Q54EH6|PSF3_DICDI Probable DNA replication complex GINS protein PSF3 OS=Dictyostelium
discoideum GN=gins3 PE=3 SV=1
Length = 265
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 11 YFDIDEILIEEELVPV-VFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVS 69
YFDI++IL EE+ + F+ + N +++ + + +G+KV+LP+W++ L VS
Sbjct: 3 YFDINDILAEEQKITCNFFYDAYNLGQLEEGSRDPDMKKGSKVDLPYWMALALAKSNFVS 62
Query: 70 INVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLSTFQMRYK 129
+ +P + + + ++ AD + +R PY+ + G +++ GDR + +L F+ R+
Sbjct: 63 VIMPPEYQDEYKNKLIADPNVISMR-LFPYYDKIGVQLSDFFGDRKLKLLLFRVFRERFL 121
Query: 130 DILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
+I +++ SK L LT +E ++ S + KW
Sbjct: 122 NIYSQSINLKETDISKILGNLTYQEREVFSNGYKSSNDYDKW 163
>sp|Q6BYZ4|PSF3_DEBHA DNA replication complex GINS protein PSF3 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=PSF3 PE=3 SV=2
Length = 176
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 9 GKYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYL---- 64
YFD+D+IL + E +P F+ + G+ + + K+ELP WL++ L +
Sbjct: 3 SNYFDLDDILSDGEKIPCRFNITVPGLGYLEGNPGKSIAKDTKIELPLWLAEILAICELS 62
Query: 65 ----RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKML 120
+ + ++ P N K I+ +A N+DL S +Y+ K A + D + +++
Sbjct: 63 EDSQQSFIDLSQPDFINYKVINAIKTNAVNIDLHSILTNYYKLSEKWASMFNDVELIEVV 122
Query: 121 LSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
+ + R +I A A+ + + F+ L + E L++ S +KW
Sbjct: 123 MQMLKERSFEINNYASNASKQINNNFIFSLDEFEKKLFKVTSDSNKQMRKW 173
>sp|P0CQ32|PSF3_CRYNJ DNA replication complex GINS protein PSF3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PSF3 PE=3 SV=1
Length = 189
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
YF I IL + + F A G+ + ++ + EG KVELPFWL+Q L + Q +
Sbjct: 5 YFSITSILADNHKMSCTFALDAEGLGYLEGSTENDIHEGTKVELPFWLAQTLSVNQFTTF 64
Query: 71 NVPACFNQKTRREIQADAANVDLRSRC---PYFYEFGCKIAPIVGDR---TIGKMLLSTF 124
+P ++ + + + A +V L + ++Y +G K+A ++ D I MLL F
Sbjct: 65 TLPLPYSSRVQSALVASPVSVKLSNLVGGNGWWYRWGKKLADMLEDEQATNIRNMLLRAF 124
Query: 125 QMRYKDI--LTKAHTAA--------YAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
R + L H +A + A F + +E L+ Q S FK W
Sbjct: 125 TGRLPTLQDLAAHHASADHTMPELSTSKAEMFRDGMEGDERELFSIGQDSGRLFKAW 181
>sp|P0CQ33|PSF3_CRYNB DNA replication complex GINS protein PSF3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PSF3 PE=3 SV=1
Length = 189
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSI 70
YF I IL + + F A G+ + ++ + EG KVELPFWL+Q L + Q +
Sbjct: 5 YFSITSILADNHKMSCTFALDAEGLGYLEGSTENDIHEGTKVELPFWLAQTLSVNQFTTF 64
Query: 71 NVPACFNQKTRREIQADAANVDLRSRC---PYFYEFGCKIAPIVGDR---TIGKMLLSTF 124
+P ++ + + + A +V L + ++Y +G K+A ++ D I MLL F
Sbjct: 65 TLPLPYSSRVQSALVASPVSVKLSNLVGGNGWWYRWGKKLADMLEDEQATNIRNMLLRAF 124
Query: 125 QMRYKDI--LTKAHTAA--------YAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
R + L H +A + A F + +E L+ Q S FK W
Sbjct: 125 TGRLPTLQDLAAHHASADHTMPELSTSKAEMFRDGMEGDERELFSIGQDSGRLFKAW 181
>sp|Q4IEA5|PSF3_GIBZE DNA replication complex GINS protein PSF3 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=PSF3 PE=3 SV=1
Length = 179
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 31/181 (17%)
Query: 11 YFDIDEILIEEELVPVVFH----------KSANGVKVDPSAEKDCVDEGAKVELPFWLSQ 60
Y+DID IL + E VP F S NG+K + + LP WL++
Sbjct: 3 YYDIDAILTDAEKVPCQFEIDVPYLGHLDNSPNGLKAN-----------TPLTLPLWLAE 51
Query: 61 ELYL------RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDR 114
L L +++N+P C + ++AD V LR +FY G ++ + ++
Sbjct: 52 MLALASTPTSNSPLTLNLPPCLSTAVLSALKADPRAVPLRDHSLHFYGVGVRMLDLFDEK 111
Query: 115 TIGKMLLSTFQMRYKDILTKAHTAAYAV----ASKFLAVLTKEETNLYEAAQSSMAAFKK 170
+ ++L TF +R D+ A A + +FL L + E L+ + K+
Sbjct: 112 DVAEVLRKTFVVRAGDVGLHARKADEGMVGGNGEEFLRGLEEWERGLFRRGHEGVKGAKE 171
Query: 171 W 171
W
Sbjct: 172 W 172
>sp|Q5AFK3|PSF3_CANAL DNA replication complex GINS protein PSF3 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=PSF3 PE=3 SV=1
Length = 177
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELY---LRQA 67
Y+D+D+IL + E + F+ + G+ + E K+ELP WLS L + +
Sbjct: 5 YYDLDDILADSEKLTCKFNITVPGLGYLEGNPGKPIHEDTKLELPHWLSGILATVAIDED 64
Query: 68 VSINV-----PACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLLS 122
+IN P +K I+ D VDL PY+Y K + D+T+ +++
Sbjct: 65 SNINFLDLADPDIIKEKVINAIKTDPLAVDLHKLTPYYYSLILKWGNLYTDKTLIANVMN 124
Query: 123 TFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
+ R +I ++ A + ++FL L + E L+++ S + +KW
Sbjct: 125 CLKARSLEIYNFSNNANKTLNNEFLYTLDEFERALFKSTSDSNKSMRKW 173
>sp|Q6CPV6|PSF3_KLULA DNA replication complex GINS protein PSF3 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=PSF3 PE=3 SV=1
Length = 188
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 25/186 (13%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQA--- 67
Y+DID+IL + P F+ G+ + + AK+ELP W+ L + A
Sbjct: 3 YYDIDDILADGTRFPCRFNYDVPGLGYLEGNPGRPISKNAKLELPLWMVHLLAVVGAQSN 62
Query: 68 -----------VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTI 116
V + P F + I++ A ++DL S P+FY K A + D+ +
Sbjct: 63 EDSRVEEPLPFVELLPPDLFAPRVLNAIKSGATSLDLHSISPHFYTLAEKWATLFSDKEL 122
Query: 117 GKMLLSTFQMRYKDILTKAHTAAYAVASK---------FLAVLTKEETNLYEAAQSSMAA 167
++L R ++I H + ++ S FL L + E +Y +
Sbjct: 123 SQVLKDMLLERGQEI--NNHAISVSMFSNCNQTNDSAVFLQTLDEFEKTIYRDTNVNCKE 180
Query: 168 FKKWRI 173
KKW +
Sbjct: 181 MKKWLV 186
>sp|Q6FW66|PSF3_CANGA DNA replication complex GINS protein PSF3 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=PSF3 PE=3 SV=1
Length = 249
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQA--- 67
Y+DID+IL++ VP F+ G+ + + + K+ LP WL++ L + A
Sbjct: 3 YYDIDDILVDSTEVPCKFNYEIPGLGYLENNPGKPIRKNTKLSLPLWLARVLAIVGADSQ 62
Query: 68 ------------------VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAP 109
V + P F+ K I+ D ++DL + PYF + K
Sbjct: 63 EQEDMDPNAEEEDGGDAFVELLTPDMFSNKVINAIKTDPKSLDLHAINPYFLDMALKWIA 122
Query: 110 IVGDRTIGKMLLSTFQMRYKDILTKAHTAA 139
+ D+ +G+++ R + I A + +
Sbjct: 123 LYSDKDLGEIVYELLLERAQQINNYASSVS 152
>sp|Q7S432|PSF3_NEUCR DNA replication complex GINS protein psf-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=psf-3 PE=3 SV=1
Length = 218
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYL------ 64
Y+DID IL + E +P F + + + G++V LP WL++ L +
Sbjct: 3 YYDIDAILTDAEKIPCTFQIDVPDLGYLDNQPGHTLKSGSRVALPIWLAEMLAIANTGAV 62
Query: 65 ---------RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRT 115
+ ++ ++P + ++AD +V LR + +FY + + +
Sbjct: 63 DMDDPSQSSKSFITFDLPPALGNDVVQALKADPRSVPLRDQSAHFYALATHMMELSEEPE 122
Query: 116 IGKMLLSTFQMRYKDILTKA 135
+ +L TF R +I A
Sbjct: 123 LSAVLRKTFVSRAAEIALHA 142
>sp|Q74Z08|PSF3_ASHGO DNA replication complex GINS protein PSF3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=PSF3 PE=3 SV=1
Length = 185
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLS---------QE 61
Y+D+D+IL + F+ G+ V + +KVELP WL+ QE
Sbjct: 3 YYDLDDILADSSKFACRFNYELPGLGYLEGNPGKPVGKHSKVELPLWLASVLATVTGEQE 62
Query: 62 LYLRQA---VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGK 118
+A V P F+ + I+ADA +D+ S +FY G + A + D +
Sbjct: 63 HVDEEALPFVEFLPPEMFSARVVNAIKADAPTLDVHSINGHFYALGTRWAALFSDAGLAG 122
Query: 119 MLLSTFQMRYKDILTKAHTAAYA------VASKFLAVLTKEETNLYEAAQSSMAAFKKW 171
ML R ++ A +AA ++ L L + E LY A ++ K W
Sbjct: 123 MLAGMVLERALEVQRHAASAAVEATAPTDATARMLQTLDEWERQLYRRAHAASRDAKLW 181
>sp|Q2GPK5|PSF3_CHAGB DNA replication complex GINS protein PSF3 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=PSF3 PE=3 SV=1
Length = 207
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 10 KYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYL----- 64
Y+DID IL + E + G KV LP WL++ L +
Sbjct: 2 SYYDIDAILTDAE----------------------PLKAGTKVNLPLWLAEMLAIANTGD 39
Query: 65 ---RQAVSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGKMLL 121
+ VS ++P + ++AD V LR +FY + + ++ + L
Sbjct: 40 VEGKSFVSFDLPPAMGNDVVQALKADPRAVPLRDHSAHFYGLAIHMMELSEEQELAAALR 99
Query: 122 STFQMRYKDILTKAHTAAYAVASKFLAV 149
TF R ++ A +++++
Sbjct: 100 KTFITRASEVALHAQGPEQDATGRWISI 127
>sp|Q12146|PSF3_YEAST DNA replication complex GINS protein PSF3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PSF3 PE=1
SV=2
Length = 194
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 31/190 (16%)
Query: 11 YFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQA--- 67
Y+DID++L + P F G+ + + + K+ LP WL++ L +
Sbjct: 3 YYDIDDVLADGTEFPCKFQYDIPGLGYLENNPGRPITKNTKLSLPLWLARILAIVGGDEA 62
Query: 68 ---------VSINVPACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPIVGDRTIGK 118
V + P F+ K I+ D +DL S +F+ K + ++ +
Sbjct: 63 LVDEEPVPFVELLPPDMFSTKVMNAIKTDPVALDLHSINSHFFSLAIKWIMLFSEKELAN 122
Query: 119 MLLSTFQMRYKDILTKAHTAAYAV-----------------ASKFLAVLTKEETNLYEAA 161
++ R +++ H ++ ++ S FL L + E +Y+ +
Sbjct: 123 VVSELLLQRAQEL--NHHASSLSIDLNADSTGKNSANTNIATSTFLLKLEEMEKEIYKKS 180
Query: 162 QSSMAAFKKW 171
S K+W
Sbjct: 181 HESYKDTKRW 190
>sp|P57230|SYFB_BUCAI Phenylalanine--tRNA ligase beta subunit OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=pheT PE=3
SV=1
Length = 795
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 19 IEEELVPVVFHKSANGVKVDPSAEKDCVDEGAK--------VELPFWLSQELYLRQAVSI 70
++ LVP V K N +D A+K+C++ + V+ PFW+ ++L+ +S
Sbjct: 190 LKNRLVPAVIQKKIN---IDIQADKECMNFFGRIIENININVDTPFWMKKKLFFSNVLSE 246
Query: 71 NV 72
N+
Sbjct: 247 NI 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,193,628
Number of Sequences: 539616
Number of extensions: 2394994
Number of successful extensions: 4610
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4572
Number of HSP's gapped (non-prelim): 23
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)