Query 029480
Match_columns 192
No_of_seqs 110 out of 243
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e9x_C GINS complex subunit 3; 100.0 9E-61 3.1E-65 391.9 10.0 192 1-192 12-216 (219)
2 3anw_B GINS23, putative unchar 99.6 4.2E-16 1.4E-20 122.1 5.7 148 10-174 1-170 (171)
3 2e9x_B DNA replication complex 99.5 2.5E-14 8.7E-19 113.7 5.9 145 16-161 7-159 (185)
4 3anw_A GINS51, putative unchar 95.2 0.0074 2.5E-07 47.5 1.9 46 115-167 62-107 (188)
5 2e9x_A DNA replication complex 60.1 20 0.00067 26.5 5.8 56 115-170 71-126 (149)
6 2q9q_C DNA replication complex 56.8 21 0.0007 27.6 5.6 57 114-170 70-126 (196)
7 3ci9_A Heat shock factor-bindi 30.3 90 0.0031 18.6 4.3 39 115-157 9-47 (48)
8 3swf_A CGMP-gated cation chann 27.8 1.3E+02 0.0044 19.7 5.1 39 119-161 14-52 (74)
9 3swy_A Cyclic nucleotide-gated 24.7 1.2E+02 0.0039 18.0 4.5 33 120-156 13-45 (46)
10 2e9x_D GINS complex subunit 4; 23.6 1.5E+02 0.0052 23.1 5.7 52 114-168 83-140 (223)
11 3arc_J Photosystem II reaction 22.1 23 0.00079 20.4 0.4 12 53-64 7-18 (40)
No 1
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=100.00 E-value=9e-61 Score=391.92 Aligned_cols=192 Identities=28% Similarity=0.504 Sum_probs=160.2
Q ss_pred CCCCCCCCCcccccchhhhccceeceEEEeccCccc--c-CC--CCcccc-cccCCcccchhhhhhhh--hhhhheeccC
Q 029480 1 MNDTSSRNGKYFDIDEILIEEELVPVVFHKSANGVK--V-DP--SAEKDC-VDEGAKVELPFWLSQEL--YLRQAVSINV 72 (192)
Q Consensus 1 ~~~~~~~~~~YydiddILa~~ekVpc~f~~~~~~lG--~-d~--~~~~~~-l~~g~kveLPlWLA~~L--~~~~~v~i~~ 72 (192)
||.+.+++++|||||||||++|+|||+|++++|||| + |+ ++...+ |++|++||||||||+.| ..+++|+|++
T Consensus 12 ~~~~~~~~~~YydiDdILa~~ekVpC~f~~~~~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~ 91 (219)
T 2e9x_C 12 ESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVEL 91 (219)
T ss_dssp CCCTTSSSCCTTCHHHHHHTTSEEEEEESSCBTTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECC
T ss_pred CccccccccCcCCHHHHHhcCCeeeeEEeecCCCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeC
Confidence 455557889999999999999999999999999999 7 88 455456 99999999999999999 8899999999
Q ss_pred CcccchhhHHHhhhccccccccccCcceeecCceeccc--ccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhh
Q 029480 73 PACFNQKTRREIQADAANVDLRSRCPYFYEFGCKIAPI--VGDRTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVL 150 (192)
Q Consensus 73 P~~~~~~~~~~L~Adp~~V~L~~~~~~fY~~g~~l~~l--~~d~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~L 150 (192)
|++|++.++++|+|||++|||+++|||||++|.+|+.+ .+|++|.++|++||++|+++|+++|+|..++++++|..+|
T Consensus 92 P~~y~~~~~~~L~Adp~~VdL~~~~p~fY~lG~~L~~l~~~ed~~L~~~L~~tf~~R~~~I~d~a~~~~~~~~~~~~~~L 171 (219)
T 2e9x_C 92 PKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARL 171 (219)
T ss_dssp CGGGSHHHHHHHHHCGGGSCTTTSCSSHHHHHHHGGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTC
T ss_pred chhhhHHHHHHHhcCCcEEecccCCchHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHhcC
Confidence 99999999999999999999999999999999999999 7789999999999999999999999999766778999999
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhcCc-cceeeccc--cccCCCCC
Q 029480 151 TKEETNLYEAAQSSMAAFKKWRIGGP-RIQRASVL--GRKRKPID 192 (192)
Q Consensus 151 t~~Er~lf~~g~~s~~~~~~W~~~~~-~~~~~~~~--~rkrk~~~ 192 (192)
|++||+||++|+++.++|++|++|+. +|++|+++ |||||+.+
T Consensus 172 d~~Er~Lf~~g~~~~~~~~~W~~~~~~~i~~s~~v~~~~krk~~~ 216 (219)
T 2e9x_C 172 DEMERGLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRKFTD 216 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhhccccc
Confidence 99999999999999999999999877 99999995 88888653
No 2
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=99.61 E-value=4.2e-16 Score=122.05 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=113.2
Q ss_pred cccccchhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccC--CcccchhhHHHhhhc
Q 029480 10 KYFDIDEILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINV--PACFNQKTRREIQAD 87 (192)
Q Consensus 10 ~YydiddILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~--P~~~~~~~~~~L~Ad 87 (192)
+||-=...++....|||++..+. .+.++|+.++||.|+|..|...|+|+|.- +..- ...-+++-.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f-----------~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I-~eL~~il~eE 68 (171)
T 3anw_B 1 NYFQGSHMFTGKALIAVKVMKPF-----------GDWKSGDIVLVEDWKARELWEAGVVEIVDETDKII-GEIDKVIAEE 68 (171)
T ss_dssp CCCCCCSCCCSCSEEEEEECSCC-----------TTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHH-HHHHHHHHHH
T ss_pred CccccccccccceeeehHHhhhh-----------hhcCCCCeeeccHHHHHHHHHCCCEeeccccchHH-HHHHHHHHHh
Confidence 46666777778888999887543 36899999999999999999999999964 3333 3556666555
Q ss_pred cccccccccCcceeecCceecccc-c--------c-----------hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 029480 88 AANVDLRSRCPYFYEFGCKIAPIV-G--------D-----------RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFL 147 (192)
Q Consensus 88 p~~V~L~~~~~~fY~~g~~l~~l~-~--------d-----------~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~ 147 (192)
-..-.|..+.++||.........+ . | .++.+.+.+++..|+++|+..|....+ +.+++
T Consensus 69 r~~~~L~~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la~~~~~--~~eil 146 (171)
T 3anw_B 69 RESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAVMLRPN--SLELL 146 (171)
T ss_dssp TTSSSCCCCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--C--CHHHH
T ss_pred hccCccccCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHH
Confidence 555688888899998665544322 1 2 356778899999999999999977764 37899
Q ss_pred HhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 029480 148 AVLTKEETNLYEAAQSSMAAFKKWRIG 174 (192)
Q Consensus 148 ~~Lt~~Er~lf~~g~~s~~~~~~W~~~ 174 (192)
++||++|+.||...+.+ .+.|...
T Consensus 147 ~rLTpEEk~iy~~l~~~---i~~w~g~ 170 (171)
T 3anw_B 147 SRLAPEERRIYLQMSKI---RNEWLGD 170 (171)
T ss_dssp TTSCHHHHHHHHHHHHH---HHHHTCC
T ss_pred hcCCHHHHHHHHHHHHH---HHHHccC
Confidence 99999999999999988 7777653
No 3
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=99.49 E-value=2.5e-14 Score=113.74 Aligned_cols=145 Identities=20% Similarity=0.250 Sum_probs=113.2
Q ss_pred hhhhccceeceEEEeccCccccCCCCcccccccCCcccchhhhhhhhhhhhheeccCCcccchhhHHHhhhcccc-cccc
Q 029480 16 EILIEEELVPVVFHKSANGVKVDPSAEKDCVDEGAKVELPFWLSQELYLRQAVSINVPACFNQKTRREIQADAAN-VDLR 94 (192)
Q Consensus 16 dILa~~ekVpc~f~~~~~~lG~d~~~~~~~l~~g~kveLPlWLA~~L~~~~~v~i~~P~~~~~~~~~~L~Adp~~-V~L~ 94 (192)
+|||++|.|.+++++.+.++-+-.|. -.++.+|.++++|+|||..|.+++.|+|.+|.|++.+..+.+...... -.+.
T Consensus 7 eFlae~e~I~IvP~f~~~~~~lI~g~-~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~~~~~f~ 85 (185)
T 2e9x_B 7 EFLAEKELVTIIPNFSLDKIYLIGGD-LGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERKEETFT 85 (185)
T ss_dssp HHHHTTSEEEEEESSCBCCEEETTEE-ECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHHHCSSCC
T ss_pred HHHhcCCeEEEEeCCCCCceeeeecc-cCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHhcccccc
Confidence 68999999999999999988763332 257999999999999999999999999999999998877666533222 2344
Q ss_pred ccCc-ceeecCceecccccc-----hhHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhHHHhhhhhhhhHHHHH
Q 029480 95 SRCP-YFYEFGCKIAPIVGD-----RTIGKMLLSTFQMRYKDILTKAHTAAY-AVASKFLAVLTKEETNLYEAA 161 (192)
Q Consensus 95 ~~~~-~fY~~g~~l~~l~~d-----~~l~~~L~~~f~~R~~~I~~~a~~~~~-~~~~~~~~~Lt~~Er~lf~~g 161 (192)
.+.. |||+.+..|++...| .+++.++.++...|..||.+....... +...--+.+|+..|....+..
T Consensus 86 ~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~f 159 (185)
T 2e9x_B 86 PMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTF 159 (185)
T ss_dssp CCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHHH
Confidence 4444 699999999876653 478999999999999999988766532 112234688999998866655
No 4
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=95.16 E-value=0.0074 Score=47.52 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHH
Q 029480 115 TIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAA 167 (192)
Q Consensus 115 ~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g~~s~~~ 167 (192)
.+.+++.++|..|+++|++.|... ...+||++|+.||.........
T Consensus 62 ~~~~~~~~i~~~Rl~KIv~~a~~~-------~~~~Lt~EEk~l~~~l~~~i~~ 107 (188)
T 3anw_A 62 IAESLMKEIIKLRLHKIVDLAVEG-------KIAEMTAEEKRLFNVIRAFIER 107 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------EECCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhhhCCHHHHHHHHHHHHHHHh
Confidence 477889999999999999999221 3689999999999998877544
No 5
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=60.10 E-value=20 Score=26.50 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHhhh
Q 029480 115 TIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKK 170 (192)
Q Consensus 115 ~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g~~s~~~~~~ 170 (192)
....+|+-=...|+.+|-...-+.+....++....|++.|.+-|+.-.+....|..
T Consensus 71 RnKrcLlAYl~~Rl~kI~~~~w~~g~~L~~~~~~~LS~~E~~f~~~Y~~lL~~y~~ 126 (149)
T 2e9x_A 71 RNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRSLATYMR 126 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCChHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 55777777788999999998877654334567899999999999999999888876
No 6
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=56.75 E-value=21 Score=27.61 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHHHHHHHHhhh
Q 029480 114 RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAAQSSMAAFKK 170 (192)
Q Consensus 114 ~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g~~s~~~~~~ 170 (192)
.....+|+.=...|+.+|-..+-+.+..-..+....|++.|++-|+.-.+....|..
T Consensus 70 ~R~Kr~l~aYlr~Rl~KI~~~~w~~~~~l~~~~~~~LS~~E~~y~~~y~~ll~~y~~ 126 (196)
T 2q9q_C 70 LRNRRCTVAYLYDRLLRIRALRWEYGSILPNALRFHMAAEEMEWFNNYKRSLATYMR 126 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 356777777788999999999877653223556899999999999999888777765
No 7
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=30.29 E-value=90 Score=18.64 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhH
Q 029480 115 TIGKMLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNL 157 (192)
Q Consensus 115 ~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~l 157 (192)
...+.|++-+..||..+-+.-.... .+...++|..|+.|
T Consensus 9 ~~vq~LL~qmq~kFq~mS~~I~~ri----DdM~~RIDdLE~si 47 (48)
T 3ci9_A 9 SVVQTLLQQMQDKFQTISDQIIGRI----DDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHhhc
Confidence 3456677778888887776665554 34677888888765
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.81 E-value=1.3e+02 Score=19.67 Aligned_cols=39 Identities=26% Similarity=0.243 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhhHHHHH
Q 029480 119 MLLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETNLYEAA 161 (192)
Q Consensus 119 ~L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~lf~~g 161 (192)
.-++++..|+.+|+..-.++ ...+.+++|..|..+=...
T Consensus 14 ~sld~LQTrfARLLaEy~ss----Q~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESM----QQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccC
Confidence 33578999999998553332 3678999999999776533
No 9
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.72 E-value=1.2e+02 Score=18.01 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHhhhhhhhh
Q 029480 120 LLSTFQMRYKDILTKAHTAAYAVASKFLAVLTKEETN 156 (192)
Q Consensus 120 L~~~f~~R~~~I~~~a~~~~~~~~~~~~~~Lt~~Er~ 156 (192)
-.+++..|+..|+..=.++ ...+.+++|..|..
T Consensus 13 ~ld~LqTr~ArLlae~~ss----q~KlKqRit~lE~~ 45 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNAT----QMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 3578899999998543332 36688999999875
No 10
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A*
Probab=23.58 E-value=1.5e+02 Score=23.06 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH------HhhhhhhhhHHHHHHHHHHHh
Q 029480 114 RTIGKMLLSTFQMRYKDILTKAHTAAYAVASKFL------AVLTKEETNLYEAAQSSMAAF 168 (192)
Q Consensus 114 ~~l~~~L~~~f~~R~~~I~~~a~~~~~~~~~~~~------~~Lt~~Er~lf~~g~~s~~~~ 168 (192)
..++-+|+.-++.|+.+|-..+.+... ..-. ..|++.|.+.|+.-......+
T Consensus 83 eR~k~~l~sYlR~RL~KIe~~~~~~~~---~~~~r~~~~~~~LS~~E~~f~~~y~~ll~~~ 140 (223)
T 2e9x_D 83 ERIRYVLSSYLRCRLMKIEKFFPHVLE---KEKTRPEGEPSSLSPEELAFAREFMANTESY 140 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHH---HHHTCCTTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---hhhhccccccccCCHHHHHHHHHHHHHHHHH
No 11
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=22.08 E-value=23 Score=20.42 Aligned_cols=12 Identities=17% Similarity=0.659 Sum_probs=8.8
Q ss_pred cchhhhhhhhhh
Q 029480 53 ELPFWLSQELYL 64 (192)
Q Consensus 53 eLPlWLA~~L~~ 64 (192)
.+||||.-....
T Consensus 7 RiPLWlvgtv~G 18 (40)
T 3arc_J 7 RIPLWIVATVAG 18 (40)
T ss_dssp SSCHHHHHHHHH
T ss_pred cccEEeeeeehh
Confidence 689999766543
Done!