BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029481
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OGH|B Chain B, Crystal Structure Of Ycie Protein From E. Coli Cft073, A
           Member Of Ferritine-Like Superfamily Of
           Diiron-Containing Four-Helix-Bundle Proteins
 pdb|3OGH|A Chain A, Crystal Structure Of Ycie Protein From E. Coli Cft073, A
           Member Of Ferritine-Like Superfamily Of
           Diiron-Containing Four-Helix-Bundle Proteins
          Length = 171

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 52  NAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPAC 111
           NA    +   D  ++         + +     ++ NYP+L A+   ++S T++ IV    
Sbjct: 2   NAXNRIEHYHDWLRDAHAXEKQAESXLESXASRIDNYPELRARIEQHLSETKNQIVQ--- 58

Query: 112 VPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIG 144
              LE  L  ++ ++S   DS +     G  IG
Sbjct: 59  ---LETILDRNDISRSVIKDSXSKXAALGQSIG 88


>pdb|3V98|A Chain A, S663d Stable-5-Lox
 pdb|3V98|B Chain B, S663d Stable-5-Lox
 pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
 pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
          Length = 691

 Score = 27.3 bits (59), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 144 GSEDNWIVVILTTSTPAGSYVPY 166
           GS D+W +  +T  TP G Y+ +
Sbjct: 93  GSNDDWYLKYITLKTPHGDYIEF 115


>pdb|3V92|B Chain B, S663a Stable-5-Lox
 pdb|3V92|A Chain A, S663a Stable-5-Lox
          Length = 691

 Score = 27.3 bits (59), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 144 GSEDNWIVVILTTSTPAGSYVPY 166
           GS D+W +  +T  TP G Y+ +
Sbjct: 93  GSNDDWYLKYITLKTPHGDYIEF 115


>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
 pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
          Length = 691

 Score = 27.3 bits (59), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 144 GSEDNWIVVILTTSTPAGSYVPY 166
           GS D+W +  +T  TP G Y+ +
Sbjct: 93  GSNDDWYLKYITLKTPHGDYIEF 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,095,438
Number of Sequences: 62578
Number of extensions: 201229
Number of successful extensions: 250
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 4
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)