BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029481
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84MC0|UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis
thaliana GN=At3g06035 PE=2 SV=1
Length = 200
Score = 232 bits (592), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/180 (63%), Positives = 137/180 (76%), Gaps = 5/180 (2%)
Query: 18 NLLVKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANT 77
N V DTDEED LL G+NSYR + NLT L+KN+NAECLADE+ADQFKN+PCTN TG+ T
Sbjct: 19 NRPVLSDTDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSAT 78
Query: 78 VPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTK 137
VPGTE Q +NYP +LAKCHLNVS+TRDG +MPACVP LE +LVL+NFTKSQYS SLND+K
Sbjct: 79 VPGTEPQFANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSK 138
Query: 138 YKGAGIGSEDNWIVVILTTSTPAGSYVPYNAASLISN-----IGLIYCLLFWLISALLIF 192
+ G GIG ED+WIVV+LTT+TP GSY SN IGL+ L+ ++ S+ F
Sbjct: 139 FTGIGIGKEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFF 198
>sp|P59833|UGPI3_ARATH Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis
thaliana GN=At5g19250 PE=1 SV=1
Length = 196
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/147 (69%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Query: 20 LVKCDT-DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTV 78
LV DT DEED LL G+NSYR SLNLT+L N NAECLADE+ADQFKNQPCTN+TG+ +V
Sbjct: 21 LVLSDTADEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASV 80
Query: 79 PGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKY 138
PGT N P+LL+KC LN + TRDG ++PACVPNL+ SLVL+NFT SQYS LND+K+
Sbjct: 81 PGTTPGFPNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKF 140
Query: 139 KGAGIGSEDNWIVVILTTSTPAGSYVP 165
G GIGS+DNWIVV+LTTSTP GSY P
Sbjct: 141 TGIGIGSDDNWIVVVLTTSTPEGSYSP 167
>sp|Q84VZ5|UGPI2_ARATH Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis
thaliana GN=At5g19240 PE=2 SV=2
Length = 199
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 114/167 (68%), Gaps = 4/167 (2%)
Query: 21 VKCDTDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPG 80
V +TD E+ L N YRES+NLT+L KNKNAECLADE+ DQ +NQPCTN+TG+ +VPG
Sbjct: 23 VLSNTDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPG 82
Query: 81 TEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKG 140
T+ + N+P+LLAKC LN + TRDG+++ C P + LS+F + + +LND+K+ G
Sbjct: 83 TDPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFA-NVLTKNLNDSKFTG 141
Query: 141 AGIG--SEDNWIVVILTTSTPAGSYVPYNAASLISNIGLIYCLLFWL 185
AG+G S+ W+V +LTT+TP GSY A + N GL+ L +L
Sbjct: 142 AGVGIDSDGIWLVTVLTTNTPGGSYSNSGAFAFGVN-GLVSSSLMFL 187
>sp|Q8GUL8|UGPI1_ARATH Uncharacterized GPI-anchored protein At5g19230 OS=Arabidopsis
thaliana GN=At5g19230 PE=1 SV=1
Length = 189
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 107/165 (64%), Gaps = 11/165 (6%)
Query: 1 MASPWLHLLLLVS-FLSMNLLVKCDTD-EEDTLLQGLNSYRESLNLTSLTKNKNAECLAD 58
MA LHLL L+S FLS++ LV TD E+D LL N YR LNL +LTKN+NAECLAD
Sbjct: 1 MAISKLHLLCLLSVFLSLHRLVLSGTDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLAD 60
Query: 59 ELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHS 118
E+ DQ KNQPCTN+ + VPG +LLAKC LN + RDG++M C P + +
Sbjct: 61 EVVDQLKNQPCTNTNNSAPVPGN--------NLLAKCSLNTTVVRDGVIMQVCFPKHDKN 112
Query: 119 LVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTSTPAGSY 163
LSNF S +LND+K G GIGS D W+VVILTT+TP G Y
Sbjct: 113 PDLSNF-NSVVLKNLNDSKITGIGIGSGDIWVVVILTTNTPEGGY 156
>sp|Q3U487|HECD3_MOUSE E3 ubiquitin-protein ligase HECTD3 OS=Mus musculus GN=Hectd3 PE=1
SV=2
Length = 861
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KCDTD----------EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQF 64
+CD D +ED L + Y ES++++S T+ N CL D AD +
Sbjct: 217 ECDEDLIHFLYDHLGKEDENLGSVKQYVESIDVSSYTEEFNVSCLTDSNADTY 269
>sp|Q5T447|HECD3_HUMAN E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1
SV=1
Length = 861
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 22 KCDTD----------EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQF 64
+CD D +ED L + Y ES++++S T+ N CL D AD +
Sbjct: 217 ECDEDLIHFLYDHLGKEDENLGSVKQYVESIDVSSYTEEFNVSCLTDSNADTY 269
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus
laevis GN=ercc5 PE=2 SV=1
Length = 1196
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 19 LLVKCDTDEEDTLLQGLNSYRESLNLT-----SLTKNKNAECLADELADQFKNQPCTNST 73
+LV +DEED L + + +L + S + + E AD L + +++P
Sbjct: 424 VLVISSSDEEDDCLNYQDGTKTTLGASLIKSISPSSMQCQESTADSLPNYTRSKP----- 478
Query: 74 GANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSN 123
V E+ ++++ L + NV N +D +++P + N++ ++LSN
Sbjct: 479 ----VSQIEEPMADHN--LQGDNCNVPNAKDKLIVPPSLGNVDKPIILSN 522
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,459,012
Number of Sequences: 539616
Number of extensions: 2776021
Number of successful extensions: 7042
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7031
Number of HSP's gapped (non-prelim): 11
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)