Query 029481
Match_columns 192
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 13:36:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05379 SCP_bacterial SCP_bact 97.7 5.8E-05 1.3E-09 54.2 4.7 41 29-69 2-42 (122)
2 TIGR02909 spore_YkwD uncharact 97.3 0.0011 2.3E-08 50.7 6.8 107 26-144 3-112 (127)
3 PF00188 CAP: Cysteine-rich se 90.7 0.069 1.5E-06 36.1 -0.1 35 32-66 1-36 (124)
4 cd05384 SCP_PRY1_like SCP_PRY1 85.5 0.58 1.3E-05 35.0 2.0 39 27-65 2-40 (129)
5 cd05381 SCP_PR-1_like SCP_PR-1 85.2 0.74 1.6E-05 34.8 2.4 45 28-73 1-45 (136)
6 cd00168 SCP SCP: SCP-like extr 83.3 0.7 1.5E-05 34.0 1.6 36 29-64 2-38 (122)
7 PF14412 AHH: A nuclease famil 81.4 0.69 1.5E-05 34.5 0.9 57 76-135 20-78 (109)
8 cd05382 SCP_GAPR-1_like SCP_GA 77.8 1.8 3.9E-05 32.1 2.1 39 28-66 3-41 (132)
9 COG2340 Uncharacterized protei 70.3 2.7 5.9E-05 35.2 1.7 109 25-145 78-188 (207)
10 PF07172 GRP: Glycine rich pro 64.7 4.5 9.8E-05 31.0 1.8 24 1-24 1-26 (95)
11 cd05385 SCP_GLIPR-1_like SCP_G 57.0 11 0.00023 29.0 2.6 45 28-72 3-54 (144)
12 cd05380 SCP_euk SCP_euk: SCP-l 53.6 7.7 0.00017 28.6 1.3 36 29-64 2-49 (144)
13 PF10001 DUF2242: Uncharacteri 39.8 23 0.0005 29.0 2.2 56 108-163 42-109 (121)
14 smart00198 SCP SCP / Tpx-1 / A 36.5 32 0.0007 25.7 2.4 36 28-63 3-49 (144)
15 PF12637 TSCPD: TSCPD domain; 32.7 62 0.0013 24.3 3.4 34 57-95 57-90 (95)
16 PF10513 EPL1: Enhancer of pol 27.4 49 0.0011 26.2 2.2 31 20-50 117-148 (160)
17 COG3075 GlpB Anaerobic glycero 26.9 53 0.0012 31.7 2.6 55 57-112 154-226 (421)
18 PF03164 Mon1: Trafficking pro 26.8 54 0.0012 30.6 2.6 40 104-158 220-259 (415)
19 PF00344 SecY: SecY translocas 21.7 73 0.0016 28.7 2.4 31 57-95 267-297 (346)
No 1
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=97.72 E-value=5.8e-05 Score=54.19 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=36.6
Q ss_pred hhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCC
Q 029481 29 DTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPC 69 (192)
Q Consensus 29 d~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpC 69 (192)
..+++.||.||+..++|+|+.+++-.+.|.+-|++.....+
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~ 42 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGY 42 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCc
Confidence 46899999999999999999999999999999998865555
No 2
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=97.27 E-value=0.0011 Score=50.69 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=62.7
Q ss_pred chhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccCc
Q 029481 26 DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDG 105 (192)
Q Consensus 26 d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~DG 105 (192)
+.|+++|+-||.||+..+||+|+-|+.-.-.|++=|+++..+.--.. .-|. .-..-+.+++..++-. .-|
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H----~~~~----~~~~~~r~~~~g~~~~--~~g 72 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSH----TSPT----YGSPFDMMKKFGISYR--MAG 72 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccc----cCCC----CCCHHHHHHHcCCCcc--cce
Confidence 56889999999999999999999999998888888877754322111 1121 1111244444433211 111
Q ss_pred eeeecccCCCccchhhcccchh--hhhcccC-CCCcceeecc
Q 029481 106 IVMPACVPNLEHSLVLSNFTKS--QYSDSLN-DTKYKGAGIG 144 (192)
Q Consensus 106 ~imPvCVP~l~~~~vltNyT~S--qy~~yLN-dSkytg~GiG 144 (192)
-.+-. -...+..++..+-+| ++..-|+ +.+..|||+.
T Consensus 73 ENi~~--g~~~~~~~v~~W~~S~gH~~nil~~~~~~~Gvg~~ 112 (127)
T TIGR02909 73 ENIAY--GNSTVEAVHNAWMNSPGHRANILNPNYTEIGVGYV 112 (127)
T ss_pred eeeec--cCCCHHHHHHHHHcCHhHHHHHcCCCcCeEeEEEE
Confidence 11100 012344567777766 5666665 4566666664
No 3
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=90.69 E-value=0.069 Score=36.13 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=25.7
Q ss_pred Hhhhhhhh-hhcCCCccccCCCCcccHHHHHHHhCC
Q 029481 32 LQGLNSYR-ESLNLTSLTKNKNAECLADELADQFKN 66 (192)
Q Consensus 32 l~~iN~YR-~slnLp~L~kN~kA~ClA~eiA~~~~~ 66 (192)
|+-+|.|| +..++|+|+-++...=.|++-|++...
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~ 36 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCAN 36 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCS
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhh
Confidence 57899999 889999999887777677777777655
No 4
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=85.51 E-value=0.58 Score=35.00 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=34.3
Q ss_pred hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhC
Q 029481 27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFK 65 (192)
Q Consensus 27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~ 65 (192)
-+..+|+.+|.||...++|+|+=|..-+=.|.+-|++..
T Consensus 2 ~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~ 40 (129)
T cd05384 2 FASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYD 40 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999988888888888853
No 5
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=85.20 E-value=0.74 Score=34.75 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=38.2
Q ss_pred hhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCC
Q 029481 28 EDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNST 73 (192)
Q Consensus 28 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt 73 (192)
|+++|+..|.||...++|+|+=++.-.=.|.+-|+++. +.|....
T Consensus 1 ~~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~-~~c~~~~ 45 (136)
T cd05381 1 PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRR-GDCALVH 45 (136)
T ss_pred ChHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhc-CCCCccc
Confidence 35799999999999999999999888888888888886 5786544
No 6
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=83.31 E-value=0.7 Score=34.04 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=31.6
Q ss_pred hhHHhhhhhhhhhc-CCCccccCCCCcccHHHHHHHh
Q 029481 29 DTLLQGLNSYRESL-NLTSLTKNKNAECLADELADQF 64 (192)
Q Consensus 29 d~Ll~~iN~YR~sl-nLp~L~kN~kA~ClA~eiA~~~ 64 (192)
+++|+-+|.||... ++++|.=+..-+=.|.+-|++.
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c 38 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRC 38 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhc
Confidence 36899999999999 9999999988888888888774
No 7
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=81.43 E-value=0.69 Score=34.47 Aligned_cols=57 Identities=11% Similarity=0.275 Sum_probs=43.8
Q ss_pred ccCCCCCC-CCCChhHhhhccccccccccCceeeecccCCCccchhhcccchhh-hhcccCC
Q 029481 76 NTVPGTEK-QLSNYPDLLAKCHLNVSNTRDGIVMPACVPNLEHSLVLSNFTKSQ-YSDSLND 135 (192)
Q Consensus 76 ~~vPg~~p-q~pnyp~~l~kC~inin~T~DG~imPvCVP~l~~~~vltNyT~Sq-y~~yLNd 135 (192)
..||.... ..+...+.|+++.+++|...+|+.||..-. +....++-.|+. |.+++++
T Consensus 20 HII~~~~~~~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~---~~~~~H~g~H~~~Y~~~V~~ 78 (109)
T PF14412_consen 20 HIIPKNNFERSPKLRKILEKYGIDINDPENGVWLPNSEK---PGRPPHRGRHPNEYNKYVRE 78 (109)
T ss_pred eecCccchhccHHHHHHHHHcCCCcCCccceeeeeccCC---CCcCCcCCCCcHHHHHHHHH
Confidence 35677765 667788999999999999999999997655 555666656665 8877754
No 8
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=77.78 E-value=1.8 Score=32.12 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=32.4
Q ss_pred hhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCC
Q 029481 28 EDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKN 66 (192)
Q Consensus 28 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~ 66 (192)
+.++|+-+|.||...++|+|+=|+.-.=.|++-|++...
T Consensus 3 ~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~ 41 (132)
T cd05382 3 QKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLAS 41 (132)
T ss_pred HHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhh
Confidence 567999999999999999999887766677777776654
No 9
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=70.31 E-value=2.7 Score=35.21 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=69.4
Q ss_pred CchhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccC
Q 029481 25 TDEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRD 104 (192)
Q Consensus 25 ~d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~D 104 (192)
.+.|...++-+|.+|+..+||+|+-|+-..=.|++-|++..++ -.-+++.| .-+++-+-+++=++.-. .-
T Consensus 78 ~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~----g~~sH~~~----~g~~~~~r~~~~g~~~~--~a 147 (207)
T COG2340 78 AQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKN----GYFSHTSP----TGETPADRLKKYGISGA--TA 147 (207)
T ss_pred chhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHc----CCccccCC----CCCCHHHHHHhCCcccc--cc
Confidence 4788899999999999999999999999888888888876442 22223333 12233344554444332 11
Q ss_pred ceeeecccCCCcc-chhhcccchhh-hhcccCCCCcceeeccC
Q 029481 105 GIVMPACVPNLEH-SLVLSNFTKSQ-YSDSLNDTKYKGAGIGS 145 (192)
Q Consensus 105 G~imPvCVP~l~~-~~vltNyT~Sq-y~~yLNdSkytg~GiGs 145 (192)
|-.+..-- .++ ..++-.+=.|. ..+.|=|..|+.+|+|.
T Consensus 148 gENIa~g~--~~~~~~~v~~Wl~S~gH~~nll~~~~~~~Gv~~ 188 (207)
T COG2340 148 GENIAYGS--NDPPEAAVDGWLNSPGHRKNLLNPAYTEIGVGV 188 (207)
T ss_pred cceeecCC--CCchHHHHHHhcCChhhhhhccCcchhheeEEE
Confidence 11111100 011 45666677775 77778888999999884
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.66 E-value=4.5 Score=31.04 Aligned_cols=24 Identities=38% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCcchhHHH-H-HHHHHHhccccccC
Q 029481 1 MASPWLHLL-L-LVSFLSMNLLVKCD 24 (192)
Q Consensus 1 Ma~~kl~l~-l-~~~~lll~s~v~c~ 24 (192)
|||-++-|+ | |.++||++|.|.-.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 895555555 4 45667777777543
No 11
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=57.01 E-value=11 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=29.6
Q ss_pred hhhHHhhhhhhhhhc-----CCCccccCCCCcccHHHHHHH--hCCCCCCCC
Q 029481 28 EDTLLQGLNSYRESL-----NLTSLTKNKNAECLADELADQ--FKNQPCTNS 72 (192)
Q Consensus 28 Ed~Ll~~iN~YR~sl-----nLp~L~kN~kA~ClA~eiA~~--~~~qpCtnt 72 (192)
.+++|+-.|.||... +++.|+=+..-+=.|.+-|++ +++.+|.++
T Consensus 3 ~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~~~~ 54 (144)
T cd05385 3 IDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGK 54 (144)
T ss_pred HHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCchhhc
Confidence 467999999999987 445677665555566666665 233455444
No 12
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=53.63 E-value=7.7 Score=28.56 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.9
Q ss_pred hhHHhhhhhhhhhc------------CCCccccCCCCcccHHHHHHHh
Q 029481 29 DTLLQGLNSYRESL------------NLTSLTKNKNAECLADELADQF 64 (192)
Q Consensus 29 d~Ll~~iN~YR~sl------------nLp~L~kN~kA~ClA~eiA~~~ 64 (192)
+.+|+.+|.||... +.++|+=+..-+=.|++-|++.
T Consensus 2 ~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C 49 (144)
T cd05380 2 QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTC 49 (144)
T ss_pred cHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcC
Confidence 46899999999998 8899998877777777777775
No 13
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=39.82 E-value=23 Score=28.97 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=44.1
Q ss_pred eecccCCCcc---chhhcccchhhhh-cccCCCCcceee--------ccCCCceEEEEEecCCCCCcc
Q 029481 108 MPACVPNLEH---SLVLSNFTKSQYS-DSLNDTKYKGAG--------IGSEDNWIVVILTTSTPAGSY 163 (192)
Q Consensus 108 mPvCVP~l~~---~~vltNyT~Sqy~-~yLNdSkytg~G--------iGsed~WmVvVLtTnT~~Gsf 163 (192)
=-||.|.... +.++.|=++.+|+ |=-|+|-=.|+| +|++||=||=|-+.--+.+.|
T Consensus 42 ~vvCa~~~~~~~~s~~fvnAlQdrY~lKks~~SASvGV~~lGSvSlP~~ss~DslVKv~seTI~~~~F 109 (121)
T PF10001_consen 42 RVVCAPDGSGGQSSTVFVNALQDRYALKKSNNSASVGVGVLGSVSLPISSSDDSLVKVASETIADGDF 109 (121)
T ss_pred EEEECCCCCCCeeEEEEEEeeeeeeeeeecCCcceEeeeeeEEEEeeccCCCccEEEeeeeeecchhH
Confidence 3589999766 8899999999986 556777666665 468999999887776666776
No 14
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=36.50 E-value=32 Score=25.72 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=27.6
Q ss_pred hhhHHhhhhhhhhhcC-----------CCccccCCCCcccHHHHHHH
Q 029481 28 EDTLLQGLNSYRESLN-----------LTSLTKNKNAECLADELADQ 63 (192)
Q Consensus 28 Ed~Ll~~iN~YR~sln-----------Lp~L~kN~kA~ClA~eiA~~ 63 (192)
.+.+|...|.||.... .++|.=++.-+=.|.+.|++
T Consensus 3 ~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~ 49 (144)
T smart00198 3 QQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQ 49 (144)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHh
Confidence 4679999999999977 88888776655556666655
No 15
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=32.70 E-value=62 Score=24.33 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhcc
Q 029481 57 ADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKC 95 (192)
Q Consensus 57 A~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC 95 (192)
.++|++||++..|........ .+...-||++.|-
T Consensus 57 ~~~ii~~L~gi~~~~~~~~~~-----~~~~S~~D~Ia~~ 90 (95)
T PF12637_consen 57 PEEIIDQLRGIRCGPSGTVGG-----SRVTSCPDAIAKA 90 (95)
T ss_pred HHHHHHHhcCCCCCCCCccCC-----CccCcHHHHHHHH
Confidence 789999999999976654443 5788888888763
No 16
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=27.44 E-value=49 Score=26.19 Aligned_cols=31 Identities=42% Similarity=0.465 Sum_probs=24.3
Q ss_pred ccccCCchhh-hHHhhhhhhhhhcCCCccccC
Q 029481 20 LVKCDTDEED-TLLQGLNSYRESLNLTSLTKN 50 (192)
Q Consensus 20 ~v~c~~d~Ed-~Ll~~iN~YR~slnLp~L~kN 50 (192)
.|..|-|+|| .-|+.+|..|+..+++.|+..
T Consensus 117 ~veYDmDeeD~~wL~~~N~~r~~~~~~~ls~~ 148 (160)
T PF10513_consen 117 GVEYDMDEEDEEWLELLNKKRKSDGLEPLSEE 148 (160)
T ss_pred CcCCCCchHHHHHHHHHHHHhhhcCCCCCCHH
Confidence 5666666664 569999999999999988753
No 17
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=26.91 E-value=53 Score=31.68 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCCCCCCCCccCCCCCC------------------CCCChhHhhhccccccccccCceeeeccc
Q 029481 57 ADELADQFKNQPCTNSTGANTVPGTEK------------------QLSNYPDLLAKCHLNVSNTRDGIVMPACV 112 (192)
Q Consensus 57 A~eiA~~~~~qpCtntt~~~~vPg~~p------------------q~pnyp~~l~kC~inin~T~DG~imPvCV 112 (192)
+.-.|+.++.+.|.-+|+.-.+|+-+- +=++++.+.+.= +.+.++-|-|+||+|.
T Consensus 154 p~l~Aa~L~~a~~~~~t~~l~iP~ld~LR~n~~efR~vNiarlLd~~~~~~~L~d~l-~~~a~~ad~V~~PAc~ 226 (421)
T COG3075 154 PQLAAANLRQAGLPVTTAELNLPELDVLRDNATEFRAVNIARLLDNEEAWPALADEL-IPVANTAEMVLMPACF 226 (421)
T ss_pred HHHHHHHHHHcCCcceeccccCCChhhhhcCchhhhhcCHHHHhcchhhhHHHHHHH-HHhcCCcceEeeceee
Confidence 567788888899999999988886431 224555555554 7889999999999995
No 18
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=26.80 E-value=54 Score=30.61 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=28.2
Q ss_pred CceeeecccCCCccchhhcccchhhhhcccCCCCcceeeccCCCceEEEEEecCC
Q 029481 104 DGIVMPACVPNLEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTST 158 (192)
Q Consensus 104 DG~imPvCVP~l~~~~vltNyT~Sqy~~yLNdSkytg~GiGsed~WmVvVLtTnT 158 (192)
.=.-+|+|.|+..++--|.= |-+||.+ +.+...|.++++.
T Consensus 220 ~E~W~PICLP~FN~~GFLya-----yv~~l~~----------~~~~~lvLiS~~~ 259 (415)
T PF03164_consen 220 GESWIPICLPKFNPNGFLYA-----YVSYLDE----------DSPVCLVLISTDK 259 (415)
T ss_pred CCceeccCCcccCCCceEEE-----EeeeccC----------CCceEEEEEeCCH
Confidence 34679999999887766654 4466766 6677777777764
No 19
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=21.72 E-value=73 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhcc
Q 029481 57 ADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKC 95 (192)
Q Consensus 57 A~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC 95 (192)
++|+||++|++ ...+||-.|. .+-.++|+|=
T Consensus 267 p~~iA~~lkk~-------g~~I~GirpG-~~T~~yL~~~ 297 (346)
T PF00344_consen 267 PKDIAENLKKS-------GDYIPGIRPG-KPTEKYLNKV 297 (346)
T ss_dssp HHHHHHHCHCT-------TSSSSTCTTS-CHHHHHHHHH
T ss_pred HHHHHHHHHHh-------CCEeCCCCCC-hhHHHHHHHH
Confidence 57999999754 4567888887 6667777763
Done!