Query 029481
Match_columns 192
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 22:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ifa_A Extracellular protein c 93.6 0.027 9.3E-07 49.8 2.1 117 27-156 220-338 (339)
2 4h0a_A Uncharacterized protein 93.0 0.044 1.5E-06 47.7 2.5 114 27-153 205-319 (323)
3 1cfe_A Pathogenesis-related pr 89.2 0.28 9.7E-06 36.6 3.3 47 26-73 2-48 (135)
4 3u3l_C Tablysin 15; CAP domain 54.9 5.1 0.00017 32.2 1.8 37 27-63 40-87 (233)
5 4aiw_A Golgi-associated plant 54.2 4.6 0.00016 30.7 1.3 38 27-64 9-46 (154)
6 3q2u_A Glioma pathogenesis-rel 48.8 6.3 0.00021 30.8 1.4 46 26-71 17-69 (205)
7 2vzn_A Venom allergen 3; major 44.9 9 0.00031 30.5 1.7 44 28-71 43-105 (218)
8 1qnx_A VES V 5, antigen 5; all 40.9 11 0.00037 29.7 1.6 45 28-72 46-109 (209)
9 3nt8_A Ancylostoma secreted pr 19.7 26 0.00088 30.3 0.3 15 28-42 37-51 (424)
10 1xta_A Natrin 1; crisp, serine 19.5 38 0.0013 27.2 1.3 38 26-63 13-55 (221)
No 1
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=93.57 E-value=0.027 Score=49.84 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccCce
Q 029481 27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGI 106 (192)
Q Consensus 27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~DG~ 106 (192)
.|.++|.-+|.||+..+||+|+-|+...-.|+.=|+++...-+-..++. -|. +..+.+++..+.......=+
T Consensus 220 ~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~---~G~-----~~~~R~~~~G~~~~~~GENI 291 (339)
T 4ifa_A 220 NMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSP---TLG-----TLGDRLQRGKVGFQLAGENI 291 (339)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBT---TTB-----CHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCC---CCC-----CHHHHHHHcCCCcCceeEEE
Confidence 4789999999999999999999999988888777776643322111111 011 22345554433211100000
Q ss_pred eeecccCCCccchhhcccchh--hhhcccCCCCcceeeccCCCceEEEEEec
Q 029481 107 VMPACVPNLEHSLVLSNFTKS--QYSDSLNDTKYKGAGIGSEDNWIVVILTT 156 (192)
Q Consensus 107 imPvCVP~l~~~~vltNyT~S--qy~~yLNdSkytg~GiGsed~WmVvVLtT 156 (192)
-. . ...+..++..+-.| +.+. |=+..|+-+|||-...|.+.++.+
T Consensus 292 A~--G--~~s~~~av~~WmnSpGHr~N-IL~~~~t~iGvGv~~~YwtQ~F~~ 338 (339)
T 4ifa_A 292 AA--Q--HSDGVAALQGWLNSEGHRKN-LLNEQFTGLGVGVYDKFYTQNFIR 338 (339)
T ss_dssp EE--S--CSSHHHHHHHHHTSHHHHHH-HTCTTCCEEEEEEETTEEEEEEEE
T ss_pred EE--e--CCCHHHHHHHHhCCHhHHHH-HhCCCCCEEEEEEEecEEEEEEec
Confidence 00 0 01223344444445 4444 545678888888666666666653
No 2
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=92.96 E-value=0.044 Score=47.75 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=65.0
Q ss_pred hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCCCCccCCCCCCCCCChhHhhhccccccccccCce
Q 029481 27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNSTGANTVPGTEKQLSNYPDLLAKCHLNVSNTRDGI 106 (192)
Q Consensus 27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt~~~~vPg~~pq~pnyp~~l~kC~inin~T~DG~ 106 (192)
.|.++|+-||.||+..+||+|+-|+...-.|..=|++....--. .+ -| .-.+..+.+++..+.-.....=+
T Consensus 205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~-h~----~~----~g~~~~~R~~~~g~~~~~~gENI 275 (323)
T 4h0a_A 205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSD-SV----EF----TEDALRGQLDKNHVTYKTTAQNV 275 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC-----------CC----CHHHHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCC-Cc----CC----CCCCHHHHHHHcCCCcCeeeeEE
Confidence 45689999999999999999999999988888888887432111 11 11 11123355555544321111100
Q ss_pred eeecccCCCccchhhcccchh-hhhcccCCCCcceeeccCCCceEEEE
Q 029481 107 VMPACVPNLEHSLVLSNFTKS-QYSDSLNDTKYKGAGIGSEDNWIVVI 153 (192)
Q Consensus 107 imPvCVP~l~~~~vltNyT~S-qy~~yLNdSkytg~GiGsed~WmVvV 153 (192)
-+ =-..+..++..+-.| ...+.|=|.+|+-+|||-..+|.+-+
T Consensus 276 A~----g~~~~~~vv~~WmnSpgHR~NiL~~~~t~iGvGv~~~YwTQ~ 319 (323)
T 4h0a_A 276 GY----AFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSLI 319 (323)
T ss_dssp EE----SCCSHHHHHHHHHTSHHHHHHHTCSSCCEEEEEEETTEEEEE
T ss_pred ec----CCCCHHHHHHHHHcCHHHHHHHcCCCCCEEEEEEEcCEEEEE
Confidence 00 001234455666566 24444556788888888655444433
No 3
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1
Probab=89.20 E-value=0.28 Score=36.59 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=39.8
Q ss_pred chhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhCCCCCCCCC
Q 029481 26 DEEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFKNQPCTNST 73 (192)
Q Consensus 26 d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCtntt 73 (192)
+.++++|+..|.||...++|+|+=++.-.=.|.+-|+++.+ -|...+
T Consensus 2 ~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~-~c~~~h 48 (135)
T 1cfe_A 2 NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAG-DCNLIH 48 (135)
T ss_dssp CSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTT-TCCSCS
T ss_pred cHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhc-CCCccc
Confidence 45778999999999999999999999988888899988753 476544
No 4
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*
Probab=54.85 E-value=5.1 Score=32.16 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=29.5
Q ss_pred hhhhHHhhhhhhhhhc-----------CCCccccCCCCcccHHHHHHH
Q 029481 27 EEDTLLQGLNSYRESL-----------NLTSLTKNKNAECLADELADQ 63 (192)
Q Consensus 27 ~Ed~Ll~~iN~YR~sl-----------nLp~L~kN~kA~ClA~eiA~~ 63 (192)
..+++|+..|.||... |.+.|+=++.-.=+|++-|++
T Consensus 40 ~~~~il~~HN~~R~~va~G~~~~P~A~nM~~L~Wd~~La~~Aq~~a~~ 87 (233)
T 3u3l_C 40 HRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKG 87 (233)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCCBSSCBCCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccCCccEECHHHHHHHHHHHHh
Confidence 4478999999999987 678888887766677777765
No 5
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*
Probab=54.22 E-value=4.6 Score=30.73 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=27.9
Q ss_pred hhhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHh
Q 029481 27 EEDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQF 64 (192)
Q Consensus 27 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~ 64 (192)
-+++.|+.-|.||+..+.|+|+=++.-.=.|.+-|+++
T Consensus 9 f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~~ 46 (154)
T 4aiw_A 9 FHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEAL 46 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 35789999999999999999987765433444444443
No 6
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A
Probab=48.78 E-value=6.3 Score=30.85 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=33.0
Q ss_pred chhhhHHhhhhhhhhhcCCC-----ccccCCCCcccHHHHHHH--hCCCCCCC
Q 029481 26 DEEDTLLQGLNSYRESLNLT-----SLTKNKNAECLADELADQ--FKNQPCTN 71 (192)
Q Consensus 26 d~Ed~Ll~~iN~YR~slnLp-----~L~kN~kA~ClA~eiA~~--~~~qpCtn 71 (192)
+-.+++|+..|.||....-| .|+=++.-.=.|.+-|++ +++.+|.+
T Consensus 17 ~f~~~~L~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~ 69 (205)
T 3q2u_A 17 DFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLK 69 (205)
T ss_dssp HHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTTCBSSCCTTSS
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCccCccCHHHHHHHHHHHHhCCCCCCcccc
Confidence 44478999999999988655 488777766677777776 44445543
No 7
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}
Probab=44.88 E-value=9 Score=30.47 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=31.1
Q ss_pred hhhHHhhhhhhhhhc-----------------CCCccccCCCCcccHHHHHHH--hCCCCCCC
Q 029481 28 EDTLLQGLNSYRESL-----------------NLTSLTKNKNAECLADELADQ--FKNQPCTN 71 (192)
Q Consensus 28 Ed~Ll~~iN~YR~sl-----------------nLp~L~kN~kA~ClA~eiA~~--~~~qpCtn 71 (192)
.+++|+..|.||... |+|+|+=++.-.=.|++-|++ +++.+|.+
T Consensus 43 ~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~~C~~~Hs~c~~ 105 (218)
T 2vzn_A 43 KDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRN 105 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCTTSCCCCBSCCCCCEECHHHHHHHHHHHTTCCSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCCCchhhchhccCCHHHHHHHHHHHHhCCcCCCCCCC
Confidence 467999999999975 356788777766667777766 34445543
No 8
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1
Probab=40.94 E-value=11 Score=29.69 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=31.1
Q ss_pred hhhHHhhhhhhhhhc-----------------CCCccccCCCCcccHHHHHHH--hCCCCCCCC
Q 029481 28 EDTLLQGLNSYRESL-----------------NLTSLTKNKNAECLADELADQ--FKNQPCTNS 72 (192)
Q Consensus 28 Ed~Ll~~iN~YR~sl-----------------nLp~L~kN~kA~ClA~eiA~~--~~~qpCtnt 72 (192)
.+++|+..|.||... |.|+|+=++.-.=.|.+-|++ +++.+|.++
T Consensus 46 ~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~~ 109 (209)
T 1qnx_A 46 KQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDV 109 (209)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHTTCCCSCCSCCCC
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCCCCccccccccccCHHHHHHHHHHHhcCcccCCCccCC
Confidence 467999999999975 256777777666667777765 344455443
No 9
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=19.66 E-value=26 Score=30.27 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=13.3
Q ss_pred hhhHHhhhhhhhhhc
Q 029481 28 EDTLLQGLNSYRESL 42 (192)
Q Consensus 28 Ed~Ll~~iN~YR~sl 42 (192)
.+++|+..|.||...
T Consensus 37 ~~~il~~HN~~R~~~ 51 (424)
T 3nt8_A 37 RQAFLDFHNNARRRV 51 (424)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 368999999999987
No 10
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A
Probab=19.54 E-value=38 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=27.2
Q ss_pred chhhhHHhhhhhhhhhcCCC-----ccccCCCCcccHHHHHHH
Q 029481 26 DEEDTLLQGLNSYRESLNLT-----SLTKNKNAECLADELADQ 63 (192)
Q Consensus 26 d~Ed~Ll~~iN~YR~slnLp-----~L~kN~kA~ClA~eiA~~ 63 (192)
+...++|+..|.||....-| .|+=++...=.|++-|++
T Consensus 13 ~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~ 55 (221)
T 1xta_A 13 KKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANT 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCccccCccCccCHHHHHHHHHHHhc
Confidence 44578999999999998655 577676655555555554
Done!