Query 029481
Match_columns 192
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 22:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029481.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029481hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1smba_ d.111.1.1 (A:) Golgi-a 76.1 0.44 3.2E-05 33.7 1.3 37 28-64 7-43 (149)
2 d1cfea_ d.111.1.1 (A:) Pathoge 43.8 6.1 0.00044 27.3 2.3 37 29-65 5-41 (135)
3 d2qrra1 d.58.18.13 (A:2-98) Me 24.0 20 0.0014 24.0 2.2 40 58-100 4-48 (97)
4 d1uwva1 b.40.4.12 (A:15-74) rR 20.5 17 0.0012 22.4 1.1 19 135-153 9-27 (60)
5 d2ge7a1 d.254.1.2 (A:8-114) Co 19.3 5.3 0.00039 29.0 -1.8 30 73-103 76-105 (107)
6 d1smra_ b.50.1.2 (A:) Chymosin 18.8 30 0.0022 25.8 2.5 35 115-157 3-37 (335)
7 d1wkta_ b.11.1.2 (A:) Yeast ki 18.5 22 0.0016 24.4 1.4 22 139-160 26-47 (88)
8 g1lya.1 b.50.1.2 (A:,B:) Cathe 15.8 39 0.0028 24.6 2.4 31 120-158 6-36 (338)
9 d1rc9a1 d.111.1.1 (A:1-164) Cy 15.5 25 0.0018 24.4 1.2 39 26-64 13-56 (164)
10 d1yvca1 b.40.4.12 (A:1-69) Hyp 15.2 23 0.0017 22.6 0.9 21 133-153 23-43 (69)
No 1
>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.07 E-value=0.44 Score=33.71 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=28.0
Q ss_pred hhhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHh
Q 029481 28 EDTLLQGLNSYRESLNLTSLTKNKNAECLADELADQF 64 (192)
Q Consensus 28 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~ 64 (192)
|+++|+..|.||+..++|+|+=++.-+=.|...|+++
T Consensus 7 ~~~il~~HN~~R~~~g~~pL~wd~~La~~A~~~A~~~ 43 (149)
T d1smba_ 7 HNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEAL 43 (149)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhh
Confidence 5679999999999999999998875333444444444
No 2
>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}
Probab=43.82 E-value=6.1 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=31.6
Q ss_pred hhHHhhhhhhhhhcCCCccccCCCCcccHHHHHHHhC
Q 029481 29 DTLLQGLNSYRESLNLTSLTKNKNAECLADELADQFK 65 (192)
Q Consensus 29 d~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~ 65 (192)
+++|+-=|.||+..++|+|+=++.-.=.|.+-|++..
T Consensus 5 q~~l~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~~ 41 (135)
T d1cfea_ 5 QDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRA 41 (135)
T ss_dssp HHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcCEECHHHHHHHHHHHHHHh
Confidence 4689999999999999999998877777778888764
No 3
>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}
Probab=23.95 E-value=20 Score=23.95 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHHHHHhCCCCCCCCCCCcc-----CCCCCCCCCChhHhhhccccccc
Q 029481 58 DELADQFKNQPCTNSTGANT-----VPGTEKQLSNYPDLLAKCHLNVS 100 (192)
Q Consensus 58 ~eiA~~~~~qpCtntt~~~~-----vPg~~pq~pnyp~~l~kC~inin 100 (192)
++++++++.+|= .+..+ .+|...+=|-..++.+++++++|
T Consensus 4 ~~~~~~L~~~~~---~g~~~llrl~f~g~~a~~Pvis~l~~~~~i~vn 48 (97)
T d2qrra1 4 EDYQARLQPNRV---EGSYPLVRMEFTGATVDAPLMSQISRKYNIDVS 48 (97)
T ss_dssp HHHHHHEESSCC---TTCEEEEEEEECTTSCSSCHHHHHHHHSCCEEE
T ss_pred HHHHHHhccccC---CCCceEEEEEEeCCCcCchHHHHHHHHHCCCeE
Confidence 688999988882 33333 48999999999999999999876
No 4
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.48 E-value=17 Score=22.42 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.6
Q ss_pred CCCcceeeccCCCceEEEE
Q 029481 135 DTKYKGAGIGSEDNWIVVI 153 (192)
Q Consensus 135 dSkytg~GiGsed~WmVvV 153 (192)
|=.+.|-|||.-|+|.|+|
T Consensus 9 ~l~~~G~Gv~r~~g~vvfV 27 (60)
T d1uwva1 9 DLDSFGQGVARHNGKTLFI 27 (60)
T ss_dssp EECTTSEEEEEETTEEEEE
T ss_pred ECCCCCcEEEEECCEEEEE
Confidence 4457899999999998877
No 5
>d2ge7a1 d.254.1.2 (A:8-114) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=19.31 E-value=5.3 Score=28.98 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCCccCCCCCCCCCChhHhhhcccccccccc
Q 029481 73 TGANTVPGTEKQLSNYPDLLAKCHLNVSNTR 103 (192)
Q Consensus 73 t~~~~vPg~~pq~pnyp~~l~kC~inin~T~ 103 (192)
+++-.||-..|++++|-++|+.| ||-.-|+
T Consensus 76 ~~~~~vpk~dP~~~~~~k~l~~~-~d~~~t~ 105 (107)
T d2ge7a1 76 EFTTVVPRDDPQFDNYVKICDQC-VDGVGTR 105 (107)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHH-BTCTTCC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH-hhhhccC
Confidence 45557899988888888888888 6665553
No 6
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.84 E-value=30 Score=25.77 Aligned_cols=35 Identities=40% Similarity=0.617 Sum_probs=27.6
Q ss_pred CccchhhcccchhhhhcccCCCCcceeeccCCCceEEEEEecC
Q 029481 115 LEHSLVLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTS 157 (192)
Q Consensus 115 l~~~~vltNyT~Sqy~~yLNdSkytg~GiGsed~WmVvVLtTn 157 (192)
+++.+.|+||-..+| |+-|.||+..+++-|++-|-
T Consensus 3 ~~~~~~l~n~~~~~Y--------~~~i~iGtP~Q~~~l~~DTG 37 (335)
T d1smra_ 3 LISPVVLTNYLNSQY--------YGEIGIGTPPQTFKVIFDTG 37 (335)
T ss_dssp BCEEEEEEEETTTEE--------EEEEEETTTTEEEEEEEETT
T ss_pred cccceeecccCCCEE--------EEEEEECCCCeEEEEEEECC
Confidence 466778999877776 34589999999999988774
No 7
>d1wkta_ b.11.1.2 (A:) Yeast killer toxin {Williopsis mrakii [TaxId: 4963]}
Probab=18.45 E-value=22 Score=24.42 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.2
Q ss_pred ceeeccCCCceEEEEEecCCCC
Q 029481 139 KGAGIGSEDNWIVVILTTSTPA 160 (192)
Q Consensus 139 tg~GiGsed~WmVvVLtTnT~~ 160 (192)
|-+|||++-.|||--=+|+.-.
T Consensus 26 tcvgig~nvhwmvtg~st~g~q 47 (88)
T d1wkta_ 26 TCVGIGANVHWMVTGGSTDGKQ 47 (88)
T ss_dssp SCEECCSSCCEEEECCTTTTSC
T ss_pred eeEeeccceEEEEecCCcCCcc
Confidence 6789999999999766665443
No 8
>g1lya.1 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.77 E-value=39 Score=24.59 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=24.1
Q ss_pred hhcccchhhhhcccCCCCcceeeccCCCceEEEEEecCC
Q 029481 120 VLSNFTKSQYSDSLNDTKYKGAGIGSEDNWIVVILTTST 158 (192)
Q Consensus 120 vltNyT~Sqy~~yLNdSkytg~GiGsed~WmVvVLtTnT 158 (192)
-|+||...+| +.-|.||+..+|+-+++-|-.
T Consensus 6 ~l~~~~d~~Y--------~~~i~iGtP~q~~~~~~DTGS 36 (338)
T g1lya.1 6 VLKNYMDAQY--------YGEIGIGTPPQCFTVVFDTGS 36 (338)
T ss_dssp EEEEETTTEE--------EEEEEETTTTEEEEEEEETTC
T ss_pred cceecCCcEE--------EEEEEEcCCCeEEEEEEECCC
Confidence 4778876666 346899999999999998743
No 9
>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}
Probab=15.54 E-value=25 Score=24.44 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=26.7
Q ss_pred chhhhHHhhhhhhhhhcCCCc-----cccCCCCcccHHHHHHHh
Q 029481 26 DEEDTLLQGLNSYRESLNLTS-----LTKNKNAECLADELADQF 64 (192)
Q Consensus 26 d~Ed~Ll~~iN~YR~slnLp~-----L~kN~kA~ClA~eiA~~~ 64 (192)
+...++|+.-|.||....-|| |.=+..-+=.|.+.|++.
T Consensus 13 ~~~~~il~~HN~~R~~~~~~a~~m~~L~Wd~~La~~A~~~a~~c 56 (164)
T d1rc9a1 13 EIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRC 56 (164)
T ss_dssp HHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccccccCHHHHHHHHHHHHHH
Confidence 344678888899999877666 666555555566666654
No 10
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=15.17 E-value=23 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=17.8
Q ss_pred cCCCCcceeeccCCCceEEEE
Q 029481 133 LNDTKYKGAGIGSEDNWIVVI 153 (192)
Q Consensus 133 LNdSkytg~GiGsed~WmVvV 153 (192)
+.|-.+.|-|||..|+|.|+|
T Consensus 23 I~~l~~~G~Giar~~g~vvfV 43 (69)
T d1yvca1 23 IEDMGKGGDGIARIDGFVVFV 43 (69)
T ss_dssp CCEECTTSCEEEEETTEEEEE
T ss_pred EEECCCCCcEEEEECCEEEEe
Confidence 556678899999999998887
Done!