BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029484
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 7/179 (3%)
Query: 7 MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPL 63
+GELG + V RNDE++++ ++R +P ++ISPGPG P+ D G+SL + LG P+
Sbjct: 21 VGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPI 80
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
GVC+G Q IG AFG KI R V HGK S + L G++ F A RYHSLV
Sbjct: 81 LGVCLGHQAIGYAFGAKI-RRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLV 139
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
+++ P ++A ED IMA H++Y + GVQFHPES+ T+ G I+ NF+ +
Sbjct: 140 VDEVHRPLIVDAISA--EDNEIMAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 105/178 (58%), Gaps = 12/178 (6%)
Query: 11 GYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67
G+ +YRN E+ +E L+ +++SPGPG P ++G + + L +P+ G+C
Sbjct: 25 GHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGIC 84
Query: 68 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE 127
+G Q I EA+GG++ ++ ++HGK+S + +D GE G+ AG++NP RYHSLV
Sbjct: 85 LGHQAIVEAYGGQVGQAG-EILHGKASAIAHD--GE-GMFAGMANPLPVARYHSLV--GS 138
Query: 128 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185
+ P+D L V A + ++MA R + + + G QFHPESI+TT G ++ + + K
Sbjct: 139 NIPAD-LTVNARFGE-MVMAVRDDR-RRVCGFQFHPESILTTHGARLLEQTLAWALAK 193
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 14/179 (7%)
Query: 11 GYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66
G++ +YRN + ++ L KNP +++SPGPG P ++G + + L +P+ G+
Sbjct: 24 GHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGI 82
Query: 67 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK 126
C+G Q I EA+GG + ++ ++HGK++ + +D + + AGL+NP RYHSLV
Sbjct: 83 CLGHQAIVEAYGGYVGQAG-EILHGKATSIEHDGQ---AMFAGLANPLPVARYHSLV--G 136
Query: 127 ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185
+ P+ L + A +G++MA RH + + G QFHPESI+TT+G ++ + +K
Sbjct: 137 SNVPA-GLTINAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQK 192
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 12/160 (7%)
Query: 24 VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKI 81
+EE+K NP+G++ S GP +++G + + VLE VP+ G+C+G Q I + FGGK+
Sbjct: 36 LEEIKAMNPKGIIFSGGPSL-ENTG-NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKV 93
Query: 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141
R + SLV + E + GL P + S + E + P ++ A +E
Sbjct: 94 GRGE----KAEYSLVEIEIIDEXEIFKGL--PKRLKVWESHMDEVKELPPK-FKILARSE 146
Query: 142 DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
I A +H++ + GVQFHPE T +G+ I+RNF K+
Sbjct: 147 TXPIEAMKHEELP-IYGVQFHPEVAHTEKGEEILRNFAKL 185
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 12/160 (7%)
Query: 24 VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKI 81
+EE+K NP+G++ S GP +++G + + VLE VP+ G+C+G Q I + FGGK+
Sbjct: 56 LEEIKAMNPKGIIFSGGPSL-ENTG-NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKV 113
Query: 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141
R + SLV + ED + GL P + S + E + P ++ A +E
Sbjct: 114 GRGE----KAEYSLVEIEIIDEDEIFKGL--PKRLKVWESHMDEVKELPPK-FKILARSE 166
Query: 142 DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
I A +H++ + GVQFHPE T +G+ I+RNF K+
Sbjct: 167 TCPIEAMKHEELP-IYGVQFHPEVAHTEKGEEILRNFAKL 205
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLELGPTVPLFGV 66
ELG + E++ D +T +++ NP G+++S GP + ++S + Q V E G VP+FGV
Sbjct: 29 ELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAG--VPVFGV 85
Query: 67 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI-- 124
C G+Q + GG + S + + + L+ G+ + TA L +
Sbjct: 86 CYGMQTMAMQLGGHVEASN----EREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWM 141
Query: 125 ----EKESFPSDALEVTAWTEDG--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNF 178
+ + PSD + V + TE IMA K++ GVQFHPE T +G ++ F
Sbjct: 142 SHGDKVTAIPSDFITVAS-TESCPFAIMANEEKRF---YGVQFHPEVTHTRQGMRMLERF 197
Query: 179 IKMIVRKEA 187
++ I + EA
Sbjct: 198 VRDICQCEA 206
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 24 VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 83
+EE+ + P+ +++S GP + D +PL G+C G+Q + + GG++ R
Sbjct: 35 LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVER 94
Query: 84 SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 143
+ +GK+ L + E L GL H + + P V A TE+
Sbjct: 95 AGRA-EYGKALLTRH----EGPLFRGLEGEVQVWMSHQDAV---TAPPPGWRVVAETEEN 146
Query: 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+ AA GVQFHPE T +G I+ NF+++
Sbjct: 147 PV-AAIASPDGRAYGVQFHPEVAHTPKGMQILENFLEL 183
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 24 VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 83
+EE+ + P+ +++S GP + D +PL G+C G Q + + GG++ R
Sbjct: 35 LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGXQLLAQELGGRVER 94
Query: 84 SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 143
+ +GK+ L + E L GL H + + P V A TE+
Sbjct: 95 AGRA-EYGKALLTRH----EGPLFRGLEGEVQVWXSHQDAV---TAPPPGWRVVAETEEN 146
Query: 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+ AA GVQFHPE T +G I+ NF+++
Sbjct: 147 PV-AAIASPDGRAYGVQFHPEVAHTPKGXQILENFLEL 183
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 21 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 138 AWTEDGLIMAARHKKYKHLQGVQFHPE-SIITTEGKTIVRNFIKMI 182
+ + H+ K Q HPE S + + +FI++I
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEASPFPHDAAPLFDHFIELI 374
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 21 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 138 AWTEDGLIMAARHKKYKHLQGVQFHPES 165
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 27 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 84
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG + +
Sbjct: 63 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKK 120
Query: 85 PL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141
+ GV + + D L GL H ++K +D +V A
Sbjct: 121 SVREDGVFN-----ISVDNTCS--LFRGLQKEEVVLLTHGDSVDK---VADGFKVVA--R 168
Query: 142 DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
G I+A + K L G QFHPE +T GK I++NF+
Sbjct: 169 SGNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 206
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 21 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 138 AWTEDGLIMAARHKKYKHLQGVQFHPES 165
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 27 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 84
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG + +
Sbjct: 68 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKK 125
Query: 85 PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144
+ + + L GL H ++K + D +V A + G
Sbjct: 126 SVR----EDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVA---DGFKVVARS--GN 176
Query: 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
I+A + K L G QFHPE +T GK I++NF+
Sbjct: 177 IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 211
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 21 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALAS 279
Query: 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 138 AWTEDGLIMAARHKKYKHLQGVQFHPES 165
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 21 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 279
Query: 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 138 AWTEDGLIMAARHKKYKHLQGVQFHPES 165
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 11/181 (6%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGV 66
E+G + E+ D + E ++ NP G+++S GP S + + E+G P+ G+
Sbjct: 32 EIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFEIG--CPVLGI 88
Query: 67 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS---NPFTAGRYHSLV 123
C G+Q + GGK+ R+ V DG+ +S P
Sbjct: 89 CYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGD 148
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183
I E P E TA T++ + A K + G+QFHPE T +G I+ +F+ I
Sbjct: 149 IVSELPP--GFEATACTDNSPLAAMADFKRRFF-GLQFHPEVTHTPQGHRILAHFVIHIC 205
Query: 184 R 184
+
Sbjct: 206 Q 206
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 21 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 221 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 278
Query: 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 279 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 327
Query: 138 AWTEDGLIMAARHKKYKHLQGVQFHPES 165
+ + H+ K Q +PE+
Sbjct: 328 HKSLFDGTLQGIHRTDKPAFSFQGNPEA 355
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 38/194 (19%)
Query: 24 VEELKRKNPRGVLISPGPGAPQDSGIS--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGG 79
++++K N +GV++S GP + ++G + V E L +P+FG+C G+Q I G
Sbjct: 43 LKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNG 102
Query: 80 KIVRSP--------LGVMHGK--SSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF 129
++ +S + ++ +++ Y G+ L + + + E+
Sbjct: 103 EVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLF--ENI 160
Query: 130 PSDALEVTAW-------------------TEDGLIMAARHKKYKHLQGVQFHPESIITTE 170
SD T W +E+ LI + +K+Y ++ GVQ+HPE + +
Sbjct: 161 KSDI--TTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEY-NIYGVQYHPEVYESLD 217
Query: 171 GKTIVRNFIKMIVR 184
G+ + NF I +
Sbjct: 218 GELMFYNFAYNICK 231
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
P+ G+C+G Q I FG +V++ V + E + GL + T H+
Sbjct: 87 PILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVXHSEN----IFGGLPSEITVWENHN 142
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
E + P D + A + + HK + + QFHPE T G+ I RNFI +
Sbjct: 143 --DEIINLPDD-FTLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIFRNFIGI 198
Query: 182 IVRKEAADSQN 192
+N
Sbjct: 199 CASYREIQKEN 209
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 26/163 (15%)
Query: 35 VLISPGPGAPQDSGIS--------LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 86
V++ PGPG P D+G L+ +++ G P VC+ Q + G +VR +
Sbjct: 490 VVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGK--PFMAVCLSHQILNAILGIPLVRREV 547
Query: 87 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED---G 143
+ + + ++ G N + A ++ D + A + D G
Sbjct: 548 PNQGIQVEIDLFGQRER----VGFYNTYVAQTV------RDEMDVDGVGTVAISRDPRTG 597
Query: 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 186
+ A R + +Q FH ES++T +G I+ I +R+E
Sbjct: 598 EVHALRGPTFSSMQ---FHAESVLTVDGPRILGEAITHAIRRE 637
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 33.9 bits (76), Expect = 0.065, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 35 VLISPGPGAPQDSGIS--------LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 86
V++ PGPG P D+G L+ +++ G P V + Q + G +VR +
Sbjct: 490 VVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGK--PFMAVXLSHQILNAILGIPLVRREV 547
Query: 87 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED---G 143
+ + + ++ G N + A ++ D + A + D G
Sbjct: 548 PNQGIQVEIDLFGQRER----VGFYNTYVAQTV------RDEMDVDGVGTVAISRDPRTG 597
Query: 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 186
+ A R + +Q FH ES++T +G I+ I +R+E
Sbjct: 598 EVHALRGPTFSSMQ---FHAESVLTVDGPRILGEAITHAIRRE 637
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 14 FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCM 68
F+V R D + ++ G+ GP + D T+L L VP+ G C+
Sbjct: 31 FQVLRXDRSDPLPAEIRDCSGLAXXGGPXSANDDLPWXPTLLALIRDAVAQRVPVIGHCL 90
Query: 69 GLQCIGEAFGGKIVRSP 85
G Q + +A GG++ SP
Sbjct: 91 GGQLLAKAXGGEVTDSP 107
>pdb|3L7N|A Chain A, Crystal Structure Of Smu.1228c
Length = 236
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE-DGLLAGLSNPFTAGRYH 120
+ GVC+G Q +G A+G + SP + + L+ E G+ D L+ S+ G +H
Sbjct: 87 IVGVCLGAQLMGVAYGADYLHSPKKEI--GNYLISLTEAGKMDSYLSDFSDDLLVGHWH 143
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGKSSL-VYYDEKGEDGLLAGLSNPFTA 116
P+FG C GL + + G +P L V+ ++S D D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGS--DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTG 131
Query: 117 GRYHSLVIEKESFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 175
+ I V +E +G I+AA+ ++ G FHPE TE +
Sbjct: 132 -----VFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFL---GCSFHPE---LTEDHRVT 180
Query: 176 RNFIKMI 182
+ F++M+
Sbjct: 181 QLFVEMV 187
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 10 LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISL--QTVLELGPTV--PLFG 65
LGY + R+ ++ + K L PG G ++ +L + ++EL V PL G
Sbjct: 25 LGYAVTISRDPQVVLAADK-------LFLPGVGTASEAXKNLTERDLIELVKRVEKPLLG 77
Query: 66 VCMGLQCIG---EAFGGKI--VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 120
+C+G Q +G E G K + LG++ G+ L+ + G+ L N H
Sbjct: 78 ICLGXQLLGKLSEEKGQKADEIVQCLGLVDGEVRLL---QTGDLPLPHXGWNTVQVKEGH 134
Query: 121 SLV--IEKESF----PSDALEVTAWT----EDGLIMAARHKKYKHLQGVQFHPESIITTE 170
L IE +++ S A V +T E G +A + + GVQFHPE +
Sbjct: 135 PLFNGIEPDAYFYFVHSFAXPVGDYTIAQCEYGQPFSAAIQAGNYY-GVQFHPER-SSKA 192
Query: 171 GKTIVRNFIKM 181
G +++NF+++
Sbjct: 193 GARLIQNFLEL 203
>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e
Protein
Length = 109
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 57
L +M ++GYH +YR L PR L G + +D GI++ TVL +
Sbjct: 49 LLDWMMKVGYHKSLYR--------LSTSFPRRALEVEGGSSLEDIGITVDTVLNV 95
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGKSSL-VYYDEKGEDGLLAGLSNPFTA 116
P+FG C GL + + G +P L V+ ++S D D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGS--DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTG 131
Query: 117 GRYHSLVIEKESFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 175
+ I V +E +G I+AA+ ++ G F+PE TE +
Sbjct: 132 -----VFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFL---GCSFNPE---LTEDHRVT 180
Query: 176 RNFIKMI 182
+ F++M+
Sbjct: 181 QLFVEMV 187
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG 171
V+ + P +V A + D + RH KY H G+ + P+ +I G
Sbjct: 242 VLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGG 290
>pdb|2GSH|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2GSH|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
Length = 414
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 26 ELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGKI 81
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 266 ELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAK 321
Query: 82 VRSPLGVMHGKS 93
R L V HG S
Sbjct: 322 SRGQLVVPHGSS 333
>pdb|2P3Z|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2P3Z|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|3BOX|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3BOX|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3CXO|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
pdb|3CXO|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
Length = 415
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 26 ELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGKI 81
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 267 ELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAK 322
Query: 82 VRSPLGVMHGKS 93
R L V HG S
Sbjct: 323 SRGQLVVPHGSS 334
>pdb|3D46|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D47|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
Length = 405
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 25 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 80
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 264 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 319
Query: 81 IVRSPLGVMHGKS 93
R L V HG S
Sbjct: 320 KSRGQLVVPHGSS 332
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 139 WTEDGLIMAA--RHKKYKHLQGVQFHP 163
W ++G M A KKY+ L GV+F P
Sbjct: 472 WVDNGYNMVAIQEEKKYQRLSGVEFGP 498
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,160,273
Number of Sequences: 62578
Number of extensions: 271392
Number of successful extensions: 749
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 38
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)