Query 029484
Match_columns 192
No_of_seqs 114 out of 1208
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 13:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02335 anthranilate synthase 100.0 6.6E-43 1.4E-47 272.3 20.6 189 1-189 32-220 (222)
2 COG0512 PabA Anthranilate/para 100.0 9.4E-42 2E-46 253.8 17.8 175 1-181 15-190 (191)
3 PRK07649 para-aminobenzoate/an 100.0 5.2E-41 1.1E-45 257.0 20.6 178 1-184 13-190 (195)
4 PRK08007 para-aminobenzoate sy 100.0 3.9E-41 8.5E-46 256.3 19.6 174 1-180 13-186 (187)
5 TIGR00566 trpG_papA glutamine 100.0 6.4E-40 1.4E-44 249.9 19.6 174 1-180 13-187 (188)
6 PRK05670 anthranilate synthase 100.0 7.2E-40 1.6E-44 250.0 19.7 176 1-182 13-188 (189)
7 CHL00101 trpG anthranilate syn 100.0 1.2E-39 2.6E-44 248.9 19.1 175 2-181 14-188 (190)
8 PRK06774 para-aminobenzoate sy 100.0 5.6E-39 1.2E-43 245.5 19.6 174 1-180 13-190 (191)
9 PRK06895 putative anthranilate 100.0 1.5E-38 3.3E-43 242.8 19.2 172 2-180 16-187 (190)
10 PRK08857 para-aminobenzoate sy 100.0 3.7E-38 8.1E-43 241.2 19.6 174 2-181 14-192 (193)
11 cd01743 GATase1_Anthranilate_S 100.0 9.1E-38 2E-42 237.5 19.4 170 2-179 13-184 (184)
12 PRK05637 anthranilate synthase 100.0 4.2E-37 9.1E-42 237.3 18.4 176 1-183 15-206 (208)
13 TIGR00888 guaA_Nterm GMP synth 100.0 6.4E-37 1.4E-41 233.6 19.1 172 2-183 13-185 (188)
14 PRK07765 para-aminobenzoate sy 100.0 3.2E-36 7E-41 233.6 19.5 175 2-182 15-192 (214)
15 KOG0026 Anthranilate synthase, 100.0 4.7E-36 1E-40 216.4 14.5 184 2-185 33-217 (223)
16 cd01742 GATase1_GMP_Synthase T 100.0 2.5E-35 5.4E-40 223.4 17.2 167 2-179 13-181 (181)
17 PRK00758 GMP synthase subunit 100.0 4.1E-35 8.9E-40 222.9 18.3 168 2-183 14-182 (184)
18 COG0505 CarA Carbamoylphosphat 100.0 7.1E-35 1.5E-39 233.9 16.4 174 1-187 191-367 (368)
19 COG0518 GuaA GMP synthase - Gl 100.0 5.4E-35 1.2E-39 223.1 14.2 171 3-183 17-194 (198)
20 PLN02347 GMP synthetase 100.0 1.7E-34 3.7E-39 248.8 18.7 177 2-187 25-207 (536)
21 PF00117 GATase: Glutamine ami 100.0 3.3E-35 7.2E-40 224.6 12.6 176 2-181 12-191 (192)
22 PRK14607 bifunctional glutamin 100.0 2.2E-34 4.8E-39 249.4 19.1 177 1-183 13-190 (534)
23 TIGR01368 CPSaseIIsmall carbam 100.0 3.3E-34 7.2E-39 236.0 18.0 170 2-183 186-357 (358)
24 PRK09522 bifunctional glutamin 100.0 5.9E-34 1.3E-38 245.6 18.5 175 1-184 15-192 (531)
25 PRK12838 carbamoyl phosphate s 100.0 1.5E-33 3.2E-38 231.9 19.1 171 2-184 180-352 (354)
26 cd01744 GATase1_CPSase Small c 100.0 1.2E-33 2.6E-38 213.7 17.2 166 1-179 10-178 (178)
27 PRK00074 guaA GMP synthase; Re 100.0 7.4E-34 1.6E-38 244.9 17.5 174 2-186 18-193 (511)
28 PRK12564 carbamoyl phosphate s 100.0 1.4E-33 3.1E-38 232.6 18.0 168 2-182 190-360 (360)
29 CHL00197 carA carbamoyl-phosph 100.0 4E-33 8.6E-38 230.8 18.0 172 1-187 204-379 (382)
30 TIGR01815 TrpE-clade3 anthrani 100.0 8E-33 1.7E-37 244.8 19.7 177 2-185 531-711 (717)
31 PRK13566 anthranilate synthase 100.0 8.1E-33 1.8E-37 245.1 19.2 175 2-183 541-719 (720)
32 PLN02771 carbamoyl-phosphate s 100.0 8.9E-33 1.9E-37 229.4 16.2 162 1-175 252-415 (415)
33 PRK09065 glutamine amidotransf 100.0 3.4E-32 7.4E-37 214.2 16.7 165 4-181 28-199 (237)
34 PRK11366 puuD gamma-glutamyl-g 100.0 1.5E-31 3.3E-36 212.3 18.7 180 3-188 31-250 (254)
35 PLN02889 oxo-acid-lyase/anthra 100.0 1.2E-31 2.7E-36 240.1 18.9 179 1-186 95-339 (918)
36 PRK07567 glutamine amidotransf 100.0 1.9E-31 4.1E-36 210.4 17.2 158 2-166 19-193 (242)
37 PRK06490 glutamine amidotransf 100.0 1E-30 2.2E-35 205.8 17.4 163 2-181 23-192 (239)
38 cd01741 GATase1_1 Subgroup of 100.0 6E-31 1.3E-35 200.6 14.6 164 2-179 15-188 (188)
39 PRK07053 glutamine amidotransf 100.0 1.4E-30 3E-35 204.4 16.7 165 2-180 18-190 (234)
40 PRK05665 amidotransferase; Pro 100.0 2.8E-30 6.1E-35 203.2 18.4 155 3-166 28-189 (240)
41 PRK08250 glutamine amidotransf 100.0 4.1E-30 8.9E-35 202.1 16.0 165 3-180 17-192 (235)
42 cd01745 GATase1_2 Subgroup of 100.0 4.9E-30 1.1E-34 195.7 14.4 145 2-179 23-189 (189)
43 COG2071 Predicted glutamine am 100.0 1.9E-29 4.2E-34 193.6 15.5 177 2-185 30-241 (243)
44 COG0118 HisH Glutamine amidotr 100.0 2.9E-29 6.3E-34 188.0 14.7 164 2-182 16-203 (204)
45 TIGR01823 PabB-fungal aminodeo 100.0 6.7E-29 1.4E-33 221.5 19.6 178 1-186 19-208 (742)
46 cd01748 GATase1_IGP_Synthase T 100.0 6.6E-29 1.4E-33 190.8 13.8 162 2-179 13-198 (198)
47 PRK13170 hisH imidazole glycer 100.0 1.7E-28 3.8E-33 188.1 15.9 160 2-180 15-195 (196)
48 PRK13146 hisH imidazole glycer 100.0 1.1E-28 2.5E-33 190.8 13.9 165 2-181 16-207 (209)
49 CHL00188 hisH imidazole glycer 100.0 1.9E-28 4.1E-33 189.3 14.7 164 2-181 16-209 (210)
50 PRK13141 hisH imidazole glycer 100.0 3.5E-28 7.5E-33 187.8 14.2 166 2-183 14-203 (205)
51 PRK14004 hisH imidazole glycer 100.0 7E-28 1.5E-32 186.1 15.1 167 1-181 13-209 (210)
52 PRK13525 glutamine amidotransf 100.0 7.7E-28 1.7E-32 183.5 15.0 157 3-183 16-188 (189)
53 PRK13152 hisH imidazole glycer 100.0 1.3E-27 2.8E-32 184.1 15.3 162 1-180 13-200 (201)
54 PRK13181 hisH imidazole glycer 100.0 8.9E-28 1.9E-32 184.7 13.7 162 2-180 14-198 (199)
55 cd01746 GATase1_CTP_Synthase T 100.0 5.6E-28 1.2E-32 189.5 12.6 176 3-179 23-235 (235)
56 PRK13527 glutamine amidotransf 100.0 1.7E-27 3.6E-32 183.3 14.7 167 2-183 18-198 (200)
57 PF07722 Peptidase_C26: Peptid 100.0 7.9E-28 1.7E-32 187.1 12.8 156 2-164 28-217 (217)
58 cd01747 GATase1_Glutamyl_Hydro 100.0 1E-26 2.2E-31 186.3 18.4 168 2-171 24-220 (273)
59 TIGR01855 IMP_synth_hisH imida 100.0 3.2E-27 7E-32 181.1 14.9 162 2-180 13-195 (196)
60 PRK06186 hypothetical protein; 99.9 5.2E-27 1.1E-31 181.6 14.3 174 2-183 19-227 (229)
61 PRK13143 hisH imidazole glycer 99.9 1E-26 2.3E-31 178.8 15.0 164 2-182 15-198 (200)
62 KOG1622 GMP synthase [Nucleoti 99.9 2.1E-27 4.6E-32 194.7 8.5 172 3-185 32-207 (552)
63 PRK05380 pyrG CTP synthetase; 99.9 8E-26 1.7E-30 192.4 17.0 175 2-187 306-531 (533)
64 TIGR00337 PyrG CTP synthase. C 99.9 5.2E-26 1.1E-30 193.5 14.4 178 2-180 307-524 (525)
65 PRK13142 hisH imidazole glycer 99.9 5.3E-25 1.2E-29 167.1 14.0 155 2-181 14-187 (192)
66 KOG3179 Predicted glutamine sy 99.9 3.4E-25 7.4E-30 165.0 11.7 156 4-166 31-195 (245)
67 KOG0370 Multifunctional pyrimi 99.9 1.4E-24 3E-29 190.5 14.4 171 2-188 185-358 (1435)
68 cd01749 GATase1_PB Glutamine A 99.9 1.3E-24 2.8E-29 165.0 11.3 152 4-179 14-183 (183)
69 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 5.9E-24 1.3E-28 161.3 14.0 154 2-179 13-183 (184)
70 PLN02327 CTP synthase 99.9 5E-24 1.1E-28 181.8 13.8 158 31-188 362-552 (557)
71 COG0504 PyrG CTP synthase (UTP 99.9 4.6E-24 1E-28 177.4 10.9 185 2-187 306-531 (533)
72 PLN02617 imidazole glycerol ph 99.9 3.7E-23 8.1E-28 178.4 16.2 169 1-185 20-213 (538)
73 TIGR01737 FGAM_synth_I phospho 99.9 2.2E-23 4.7E-28 163.3 12.9 172 2-181 16-226 (227)
74 KOG1224 Para-aminobenzoate (PA 99.9 5.7E-23 1.2E-27 171.7 12.6 175 1-183 28-218 (767)
75 PRK05368 homoserine O-succinyl 99.9 4.6E-21 1E-25 154.4 14.6 153 24-183 92-252 (302)
76 PRK03619 phosphoribosylformylg 99.9 8.3E-21 1.8E-25 147.8 14.1 171 3-180 17-218 (219)
77 PLN02832 glutamine amidotransf 99.8 1.7E-19 3.7E-24 141.6 14.4 70 2-77 15-89 (248)
78 COG0047 PurL Phosphoribosylfor 99.8 7.4E-19 1.6E-23 134.0 12.6 174 3-182 19-230 (231)
79 PRK13526 glutamine amidotransf 99.8 7E-19 1.5E-23 131.6 12.1 151 4-180 18-178 (179)
80 PRK01175 phosphoribosylformylg 99.8 1.6E-18 3.4E-23 137.8 13.3 180 2-183 19-258 (261)
81 cd01740 GATase1_FGAR_AT Type 1 99.8 2.1E-18 4.5E-23 136.1 11.7 173 2-177 14-236 (238)
82 KOG1559 Gamma-glutamyl hydrola 99.8 1.4E-18 3E-23 133.2 8.1 166 2-169 81-274 (340)
83 KOG2387 CTP synthase (UTP-ammo 99.8 2.6E-18 5.6E-23 141.3 8.7 153 31-184 363-549 (585)
84 COG0311 PDX2 Predicted glutami 99.7 3.5E-16 7.5E-21 115.7 12.5 157 4-184 16-192 (194)
85 PF01174 SNO: SNO glutamine am 99.7 4.9E-17 1.1E-21 121.3 6.0 159 4-183 12-187 (188)
86 PF13507 GATase_5: CobB/CobQ-l 99.7 5.8E-16 1.3E-20 122.9 10.0 177 3-181 18-258 (259)
87 KOG0623 Glutamine amidotransfe 99.7 6.1E-16 1.3E-20 124.1 9.7 164 2-180 16-206 (541)
88 TIGR01857 FGAM-synthase phosph 99.5 2.3E-13 5.1E-18 126.4 13.8 177 3-181 994-1238(1239)
89 TIGR01735 FGAM_synt phosphorib 99.4 2.9E-12 6.3E-17 120.5 11.5 163 3-167 1072-1281(1310)
90 PLN03206 phosphoribosylformylg 99.4 7E-12 1.5E-16 117.4 13.7 163 3-167 1054-1273(1307)
91 PRK05297 phosphoribosylformylg 99.4 1E-11 2.2E-16 117.1 13.2 164 3-168 1052-1261(1290)
92 PF04204 HTS: Homoserine O-suc 99.2 3.7E-11 8E-16 96.5 6.7 153 24-184 91-252 (298)
93 cd03131 GATase1_HTS Type 1 glu 99.2 6.5E-11 1.4E-15 88.7 5.8 108 27-138 58-174 (175)
94 TIGR01001 metA homoserine O-su 99.1 7.1E-10 1.5E-14 88.6 10.8 151 24-183 92-251 (300)
95 KOG3210 Imidazoleglycerol-phos 99.1 7.1E-10 1.5E-14 81.0 9.6 65 11-79 40-110 (226)
96 PHA03366 FGAM-synthase; Provis 99.1 1.2E-09 2.6E-14 103.3 12.6 163 3-167 1045-1268(1304)
97 PRK06278 cobyrinic acid a,c-di 99.1 1.6E-09 3.4E-14 93.0 10.9 70 2-77 10-82 (476)
98 cd03130 GATase1_CobB Type 1 gl 99.0 2.7E-09 5.8E-14 82.0 10.9 70 4-77 17-92 (198)
99 TIGR01739 tegu_FGAM_synt herpe 99.0 2.4E-09 5.2E-14 100.7 12.5 162 3-167 946-1169(1202)
100 cd01750 GATase1_CobQ Type 1 gl 99.0 9.6E-10 2.1E-14 84.2 5.6 71 2-78 14-90 (194)
101 TIGR00379 cobB cobyrinic acid 98.6 4.2E-07 9.1E-12 78.1 10.8 70 4-77 263-338 (449)
102 PRK01077 cobyrinic acid a,c-di 98.6 2.1E-06 4.5E-11 73.9 14.8 70 4-77 264-339 (451)
103 PRK00784 cobyric acid synthase 98.4 4E-07 8.6E-12 79.1 5.2 66 5-77 269-342 (488)
104 KOG1907 Phosphoribosylformylgl 98.4 1.8E-06 3.9E-11 77.5 8.6 162 4-167 1076-1286(1320)
105 cd01653 GATase1 Type 1 glutami 98.4 1E-06 2.3E-11 59.3 5.7 72 2-73 16-92 (115)
106 PRK13896 cobyrinic acid a,c-di 98.4 8.2E-06 1.8E-10 69.6 12.1 68 5-77 253-325 (433)
107 COG1897 MetA Homoserine trans- 98.3 3.2E-06 7E-11 66.0 8.3 139 24-166 92-239 (307)
108 PF07685 GATase_3: CobB/CobQ-l 98.3 1.9E-06 4.2E-11 63.8 6.6 48 31-78 7-60 (158)
109 cd03128 GAT_1 Type 1 glutamine 98.2 3.7E-06 8E-11 54.1 5.5 72 2-73 16-92 (92)
110 PRK11780 isoprenoid biosynthes 98.2 1E-05 2.2E-10 63.0 8.8 74 4-77 26-145 (217)
111 cd03133 GATase1_ES1 Type 1 glu 98.1 1.2E-05 2.7E-10 62.3 7.6 75 4-78 23-143 (213)
112 cd03169 GATase1_PfpI_1 Type 1 98.0 2.6E-05 5.7E-10 58.8 6.8 46 31-76 76-124 (180)
113 cd03147 GATase1_Ydr533c_like T 97.9 4E-05 8.7E-10 60.3 7.4 47 30-76 93-143 (231)
114 COG3442 Predicted glutamine am 97.9 0.00014 3E-09 55.9 9.9 72 3-76 26-103 (250)
115 TIGR00313 cobQ cobyric acid sy 97.9 1.1E-05 2.4E-10 69.8 3.9 47 31-77 284-336 (475)
116 TIGR01382 PfpI intracellular p 97.9 4.6E-05 1E-09 56.5 6.5 74 3-76 18-108 (166)
117 cd03146 GAT1_Peptidase_E Type 97.8 2.8E-05 6.1E-10 60.3 4.6 71 2-76 50-130 (212)
118 cd03134 GATase1_PfpI_like A ty 97.8 9E-05 2E-09 54.9 7.1 74 3-76 18-110 (165)
119 COG1492 CobQ Cobyric acid synt 97.7 3.8E-05 8.2E-10 65.7 4.3 61 11-77 276-342 (486)
120 cd03144 GATase1_ScBLP_like Typ 97.6 2.7E-05 5.8E-10 54.4 1.9 43 31-73 44-90 (114)
121 PRK04155 chaperone protein Hch 97.6 0.00033 7.2E-09 56.8 7.9 48 29-76 145-196 (287)
122 cd03132 GATase1_catalase Type 97.6 0.0002 4.4E-09 51.7 6.0 74 3-76 20-111 (142)
123 cd03141 GATase1_Hsp31_like Typ 97.5 0.00044 9.5E-09 54.0 7.0 46 31-76 90-139 (221)
124 cd03148 GATase1_EcHsp31_like T 97.5 0.00071 1.5E-08 53.3 7.9 47 30-76 95-145 (232)
125 cd03140 GATase1_PfpI_3 Type 1 97.4 0.00049 1.1E-08 51.4 6.5 46 31-76 60-107 (170)
126 cd03135 GATase1_DJ-1 Type 1 gl 97.4 0.00084 1.8E-08 49.4 7.3 74 3-76 17-109 (163)
127 COG0693 ThiJ Putative intracel 97.4 0.00048 1E-08 52.2 5.9 74 4-77 22-116 (188)
128 cd03137 GATase1_AraC_1 AraC tr 97.4 0.00071 1.5E-08 51.1 6.6 46 31-76 64-112 (187)
129 PRK05282 (alpha)-aspartyl dipe 97.3 0.00062 1.3E-08 53.6 5.5 74 3-78 53-131 (233)
130 PF09825 BPL_N: Biotin-protein 97.3 0.014 3E-07 48.9 13.6 45 31-75 49-97 (367)
131 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.2 0.0001 2.2E-09 53.7 0.3 55 22-76 28-87 (147)
132 PRK11574 oxidative-stress-resi 97.1 0.003 6.5E-08 48.1 8.0 73 4-76 22-115 (196)
133 cd03139 GATase1_PfpI_2 Type 1 96.8 0.0056 1.2E-07 45.9 6.9 46 31-76 62-110 (183)
134 KOG2764 Putative transcription 96.7 0.0064 1.4E-07 47.2 6.8 73 4-76 25-116 (247)
135 TIGR01383 not_thiJ DJ-1 family 96.6 0.0033 7.1E-08 47.0 4.3 47 30-76 62-112 (179)
136 COG1797 CobB Cobyrinic acid a, 96.6 0.019 4.1E-07 48.8 9.1 162 4-182 264-450 (451)
137 cd03138 GATase1_AraC_2 AraC tr 96.4 0.0063 1.4E-07 46.2 4.7 46 31-76 69-120 (195)
138 PF06283 ThuA: Trehalose utili 96.3 0.077 1.7E-06 41.1 10.7 153 3-166 24-199 (217)
139 PF13278 DUF4066: Putative ami 96.2 0.0056 1.2E-07 45.3 3.6 46 31-76 61-109 (166)
140 PRK11249 katE hydroperoxidase 96.0 0.015 3.2E-07 53.0 5.7 74 3-76 616-707 (752)
141 cd03129 GAT1_Peptidase_E_like 95.9 0.016 3.6E-07 44.7 5.1 74 3-76 49-130 (210)
142 PLN02929 NADH kinase 95.7 0.028 6.2E-07 45.8 5.9 58 3-69 39-96 (301)
143 cd03136 GATase1_AraC_ArgR_like 95.6 0.024 5.2E-07 42.7 4.9 46 31-76 64-111 (185)
144 PRK09393 ftrA transcriptional 95.2 0.034 7.4E-07 45.7 4.9 46 31-76 75-122 (322)
145 PRK03372 ppnK inorganic polyph 93.8 0.19 4.2E-06 41.2 6.1 61 3-70 26-106 (306)
146 PRK04539 ppnK inorganic polyph 93.7 0.27 6E-06 40.1 6.8 61 3-70 26-102 (296)
147 PRK03378 ppnK inorganic polyph 93.6 0.26 5.5E-06 40.2 6.4 61 3-70 26-97 (292)
148 PRK01911 ppnK inorganic polyph 93.3 0.24 5.3E-06 40.4 5.9 61 3-70 21-98 (292)
149 PRK03708 ppnK inorganic polyph 93.1 0.23 5E-06 40.2 5.4 62 3-70 21-90 (277)
150 PRK02231 ppnK inorganic polyph 92.9 0.32 7E-06 39.2 6.0 60 3-69 5-75 (272)
151 PRK02155 ppnK NAD(+)/NADH kina 92.7 0.46 9.9E-06 38.7 6.7 62 2-70 25-97 (291)
152 PRK14077 pnk inorganic polypho 92.5 0.39 8.6E-06 39.0 6.0 61 3-70 30-98 (287)
153 PRK02649 ppnK inorganic polyph 91.9 0.45 9.8E-06 39.0 5.8 61 3-70 22-102 (305)
154 PF03575 Peptidase_S51: Peptid 91.5 0.13 2.8E-06 37.7 2.0 71 3-73 5-82 (154)
155 smart00852 MoCF_biosynth Proba 90.9 1 2.2E-05 32.0 6.2 54 3-57 23-82 (135)
156 COG4090 Uncharacterized protei 90.8 0.64 1.4E-05 33.1 4.8 44 31-76 85-130 (154)
157 PRK04885 ppnK inorganic polyph 90.7 0.45 9.9E-06 38.2 4.5 49 3-70 20-71 (265)
158 COG3340 PepE Peptidase E [Amin 90.5 0.51 1.1E-05 36.6 4.4 68 4-73 55-131 (224)
159 PRK14075 pnk inorganic polypho 90.3 0.84 1.8E-05 36.5 5.8 55 3-70 18-72 (256)
160 TIGR02069 cyanophycinase cyano 90.3 0.79 1.7E-05 36.5 5.6 74 3-76 48-132 (250)
161 PRK01231 ppnK inorganic polyph 90.0 0.84 1.8E-05 37.3 5.6 61 3-70 25-96 (295)
162 COG4977 Transcriptional regula 88.5 1 2.3E-05 37.3 5.1 46 31-76 76-124 (328)
163 KOG4180 Predicted kinase [Gene 87.9 0.66 1.4E-05 38.1 3.5 56 3-66 80-135 (395)
164 cd00885 cinA Competence-damage 87.8 4.7 0.0001 30.1 7.9 74 3-78 24-103 (170)
165 PRK11104 hemG protoporphyrinog 87.6 1.6 3.5E-05 32.7 5.4 62 4-69 22-87 (177)
166 COG4285 Uncharacterized conser 87.4 9.2 0.0002 29.9 9.3 48 31-83 49-100 (253)
167 PRK14076 pnk inorganic polypho 87.0 1.4 3.1E-05 39.3 5.5 62 3-70 311-382 (569)
168 PRK03501 ppnK inorganic polyph 86.9 1.7 3.6E-05 35.0 5.3 50 3-69 22-74 (264)
169 PRK02645 ppnK inorganic polyph 86.8 2.1 4.5E-05 35.2 6.0 60 3-68 24-89 (305)
170 cd00886 MogA_MoaB MogA_MoaB fa 86.1 7.2 0.00016 28.4 8.0 53 3-56 25-85 (152)
171 cd00758 MoCF_BD MoCF_BD: molyb 85.1 4.8 0.0001 28.6 6.5 54 3-57 24-83 (133)
172 PLN02727 NAD kinase 84.7 2.3 5E-05 39.9 5.7 61 3-70 698-777 (986)
173 cd03145 GAT1_cyanophycinase Ty 84.7 3.3 7.1E-05 32.1 5.9 75 3-77 49-134 (217)
174 PF01513 NAD_kinase: ATP-NAD k 84.4 1 2.3E-05 36.4 3.1 38 27-70 72-110 (285)
175 PF09897 DUF2124: Uncharacteri 84.0 0.33 7.1E-06 35.2 0.1 37 31-68 80-119 (147)
176 TIGR00177 molyb_syn molybdenum 84.0 7.1 0.00015 28.1 7.1 53 2-55 31-89 (144)
177 TIGR02667 moaB_proteo molybden 83.4 8 0.00017 28.6 7.3 42 3-44 27-76 (163)
178 PRK05568 flavodoxin; Provision 83.4 7.3 0.00016 27.6 7.0 36 3-40 22-57 (142)
179 PRK01185 ppnK inorganic polyph 82.7 2.8 6.1E-05 33.8 4.9 58 3-69 21-82 (271)
180 PF03698 UPF0180: Uncharacteri 82.5 1.8 3.9E-05 28.2 3.0 37 2-44 12-48 (80)
181 COG1058 CinA Predicted nucleot 82.1 7.1 0.00015 31.2 6.9 46 3-48 26-77 (255)
182 COG3155 ElbB Uncharacterized p 81.9 2.5 5.4E-05 31.4 3.9 51 31-81 85-149 (217)
183 PRK03094 hypothetical protein; 81.2 2.1 4.6E-05 27.8 3.0 37 2-44 12-48 (80)
184 PRK04761 ppnK inorganic polyph 81.0 2.1 4.5E-05 34.1 3.5 34 31-70 25-59 (246)
185 PRK00561 ppnK inorganic polyph 80.9 2.2 4.7E-05 34.2 3.6 34 31-70 33-67 (259)
186 PLN02935 Bifunctional NADH kin 80.8 5.6 0.00012 35.0 6.3 61 3-69 215-295 (508)
187 TIGR01753 flav_short flavodoxi 79.4 17 0.00037 25.3 7.7 36 3-40 19-54 (140)
188 PRK03670 competence damage-ind 78.5 13 0.00027 29.7 7.3 45 3-47 25-76 (252)
189 cd02067 B12-binding B12 bindin 77.8 6.7 0.00015 27.0 5.0 61 3-64 19-85 (119)
190 PRK06703 flavodoxin; Provision 75.5 10 0.00022 27.3 5.6 34 3-38 22-55 (151)
191 PRK01372 ddl D-alanine--D-alan 75.3 12 0.00026 30.2 6.6 37 2-38 27-63 (304)
192 PF00994 MoCF_biosynth: Probab 75.3 4.9 0.00011 28.8 3.8 74 3-78 22-101 (144)
193 PRK01215 competence damage-ind 74.3 13 0.00028 29.9 6.4 42 3-44 28-75 (264)
194 COG0303 MoeA Molybdopterin bio 74.2 10 0.00022 32.5 5.9 52 3-55 208-265 (404)
195 cd03142 GATase1_ThuA Type 1 gl 73.8 25 0.00054 27.4 7.6 109 3-116 28-143 (215)
196 COG3199 Predicted inorganic po 73.2 8.2 0.00018 32.2 5.0 37 31-74 100-137 (355)
197 PRK14690 molybdopterin biosynt 73.1 15 0.00032 31.6 6.8 41 3-43 225-271 (419)
198 COG0521 MoaB Molybdopterin bio 72.9 14 0.00031 27.6 5.8 45 3-47 32-83 (169)
199 COG1597 LCB5 Sphingosine kinas 72.8 17 0.00037 29.7 6.9 42 3-44 25-71 (301)
200 PRK10680 molybdopterin biosynt 71.5 19 0.00042 30.8 7.1 41 3-43 209-255 (411)
201 PRK13059 putative lipid kinase 71.5 15 0.00033 29.7 6.3 42 3-44 24-69 (295)
202 COG0061 nadF NAD kinase [Coenz 70.8 6.5 0.00014 31.8 3.9 62 2-69 20-88 (281)
203 PRK05569 flavodoxin; Provision 70.3 35 0.00075 24.0 7.9 35 3-39 22-56 (141)
204 COG2185 Sbm Methylmalonyl-CoA 70.0 11 0.00024 27.4 4.5 39 3-42 32-74 (143)
205 PRK03673 hypothetical protein; 69.6 23 0.0005 30.3 7.1 45 3-47 26-76 (396)
206 cd00887 MoeA MoeA family. Memb 69.5 20 0.00043 30.5 6.8 41 3-43 200-246 (394)
207 PF09075 STb_secrete: Heat-sta 69.2 1 2.2E-05 24.9 -0.7 17 62-78 31-47 (48)
208 PLN02884 6-phosphofructokinase 69.2 4.5 9.7E-05 34.7 2.8 50 26-75 138-200 (411)
209 TIGR01839 PHA_synth_II poly(R) 69.1 5.6 0.00012 35.4 3.4 62 2-75 238-304 (560)
210 PRK00549 competence damage-ind 69.0 24 0.00051 30.3 7.1 44 3-46 25-74 (414)
211 cd00363 PFK Phosphofructokinas 68.9 3.1 6.7E-05 34.7 1.7 49 27-75 88-149 (338)
212 COG4635 HemG Flavodoxin [Energ 68.6 6.6 0.00014 29.2 3.1 66 3-70 21-89 (175)
213 COG1454 EutG Alcohol dehydroge 68.4 19 0.00041 30.6 6.3 47 3-50 49-104 (377)
214 PF00072 Response_reg: Respons 67.7 8.9 0.00019 25.3 3.6 64 3-67 14-78 (112)
215 PRK06756 flavodoxin; Provision 67.7 24 0.00052 25.2 6.1 35 3-39 22-57 (148)
216 cd06292 PBP1_LacI_like_10 Liga 66.7 40 0.00087 26.1 7.7 38 3-40 21-64 (273)
217 PRK07308 flavodoxin; Validated 66.6 37 0.00081 24.1 6.9 33 3-37 22-54 (146)
218 cd06284 PBP1_LacI_like_6 Ligan 66.5 25 0.00053 27.1 6.4 58 3-67 21-84 (267)
219 PRK14497 putative molybdopteri 65.9 22 0.00047 31.8 6.4 41 3-43 211-257 (546)
220 PTZ00286 6-phospho-1-fructokin 65.6 4.8 0.0001 35.0 2.3 50 26-75 171-233 (459)
221 cd06309 PBP1_YtfQ_like Peripla 65.5 30 0.00064 27.0 6.7 39 2-40 20-64 (273)
222 COG4126 Hydantoin racemase [Am 65.5 18 0.00039 28.3 5.1 47 31-84 69-115 (230)
223 PRK07085 diphosphate--fructose 64.4 5.2 0.00011 35.7 2.3 49 27-75 160-223 (555)
224 PRK03604 moaC bifunctional mol 63.6 35 0.00076 28.2 6.9 54 3-57 180-240 (312)
225 TIGR02477 PFKA_PPi diphosphate 63.4 5.4 0.00012 35.4 2.3 49 27-75 157-220 (539)
226 cd06295 PBP1_CelR Ligand bindi 63.3 34 0.00075 26.6 6.7 38 3-40 32-73 (275)
227 cd03522 MoeA_like MoeA_like. T 62.6 42 0.0009 27.7 7.1 53 3-56 184-243 (312)
228 cd01545 PBP1_SalR Ligand-bindi 62.5 39 0.00084 26.1 6.9 38 3-40 21-65 (270)
229 PRK06830 diphosphate--fructose 62.3 5.9 0.00013 34.3 2.2 50 26-75 167-229 (443)
230 PRK14072 6-phosphofructokinase 62.0 5.3 0.00012 34.3 1.9 49 27-75 99-160 (416)
231 PRK14498 putative molybdopteri 61.7 34 0.00074 31.0 7.1 41 3-43 218-264 (633)
232 TIGR00147 lipid kinase, YegS/R 61.7 42 0.00091 26.9 7.1 42 3-44 24-70 (293)
233 cd08187 BDH Butanol dehydrogen 61.4 22 0.00047 30.0 5.5 48 3-51 49-105 (382)
234 PRK06555 pyrophosphate--fructo 61.1 6.8 0.00015 33.5 2.4 49 27-75 108-169 (403)
235 PF02310 B12-binding: B12 bind 60.8 12 0.00026 25.6 3.2 37 2-39 19-59 (121)
236 TIGR00200 cinA_nterm competenc 60.7 23 0.00049 30.5 5.4 43 3-45 25-73 (413)
237 cd08170 GlyDH Glycerol dehydro 60.6 32 0.00069 28.6 6.3 60 3-67 41-108 (351)
238 cd01574 PBP1_LacI Ligand-bindi 60.3 53 0.0011 25.2 7.3 38 3-40 21-65 (264)
239 PLN03028 pyrophosphate--fructo 60.3 7 0.00015 35.3 2.4 49 27-75 169-232 (610)
240 TIGR02638 lactal_redase lactal 60.1 26 0.00056 29.6 5.7 46 3-49 49-103 (379)
241 PRK01390 murD UDP-N-acetylmura 59.5 33 0.00072 29.6 6.4 42 1-42 22-76 (460)
242 PRK03767 NAD(P)H:quinone oxido 59.3 64 0.0014 24.4 7.3 18 3-20 22-40 (200)
243 PRK15454 ethanol dehydrogenase 59.1 24 0.00053 30.0 5.4 47 3-50 69-124 (395)
244 PLN02251 pyrophosphate-depende 58.8 7.7 0.00017 34.7 2.4 49 27-75 186-249 (568)
245 cd01575 PBP1_GntR Ligand-bindi 58.7 66 0.0014 24.6 7.6 38 3-40 21-64 (268)
246 cd06299 PBP1_LacI_like_13 Liga 58.2 60 0.0013 24.9 7.2 39 3-41 21-65 (265)
247 PRK14491 putative bifunctional 57.9 45 0.00097 30.2 7.0 41 3-43 399-445 (597)
248 cd08178 AAD_C C-terminal alcoh 57.3 40 0.00087 28.6 6.4 48 3-51 41-97 (398)
249 cd08194 Fe-ADH6 Iron-containin 57.3 36 0.00077 28.6 6.1 48 3-51 43-99 (375)
250 cd06281 PBP1_LacI_like_5 Ligan 57.1 68 0.0015 24.8 7.4 38 3-40 21-64 (269)
251 cd08179 NADPH_BDH NADPH-depend 56.9 43 0.00093 28.2 6.5 49 3-52 44-101 (375)
252 COG1609 PurR Transcriptional r 56.8 58 0.0013 26.8 7.2 37 3-39 80-122 (333)
253 cd01541 PBP1_AraR Ligand-bindi 56.4 74 0.0016 24.6 7.5 40 3-42 21-66 (273)
254 cd06287 PBP1_LacI_like_8 Ligan 56.0 62 0.0013 25.4 7.0 37 3-40 29-65 (269)
255 cd06280 PBP1_LacI_like_4 Ligan 56.0 67 0.0015 24.7 7.2 38 3-40 21-64 (263)
256 cd08193 HVD 5-hydroxyvalerate 55.9 38 0.00083 28.5 6.1 49 3-52 46-103 (376)
257 cd01424 MGS_CPS_II Methylglyox 55.1 62 0.0014 21.8 6.2 60 4-64 36-99 (110)
258 cd00765 Pyrophosphate_PFK Phos 54.9 9.6 0.00021 34.0 2.3 49 27-75 162-225 (550)
259 PLN02564 6-phosphofructokinase 54.9 9.2 0.0002 33.5 2.2 50 26-75 171-233 (484)
260 PRK10222 PTS system L-ascorbat 54.7 21 0.00045 23.3 3.4 35 1-38 5-41 (85)
261 cd08183 Fe-ADH2 Iron-containin 54.7 41 0.00088 28.3 6.0 48 3-51 39-94 (374)
262 TIGR01755 flav_wrbA NAD(P)H:qu 54.1 76 0.0016 24.0 6.9 17 4-20 22-39 (197)
263 cd08171 GlyDH-like2 Glycerol d 54.0 33 0.00072 28.5 5.3 61 3-68 41-110 (345)
264 PRK10624 L-1,2-propanediol oxi 53.7 38 0.00082 28.6 5.7 46 3-49 50-104 (382)
265 cd06273 PBP1_GntR_like_1 This 53.4 69 0.0015 24.6 6.9 59 2-66 20-84 (268)
266 PRK09271 flavodoxin; Provision 53.1 58 0.0012 23.7 6.0 37 3-39 21-59 (160)
267 cd06290 PBP1_LacI_like_9 Ligan 53.0 81 0.0018 24.2 7.2 38 3-40 21-64 (265)
268 cd06298 PBP1_CcpA_like Ligand- 52.5 83 0.0018 24.1 7.2 38 3-40 21-64 (268)
269 cd06320 PBP1_allose_binding Pe 52.4 65 0.0014 25.0 6.6 60 3-66 21-88 (275)
270 cd02071 MM_CoA_mut_B12_BD meth 52.1 59 0.0013 22.5 5.6 38 3-41 19-60 (122)
271 cd08185 Fe-ADH1 Iron-containin 51.9 43 0.00093 28.2 5.7 48 3-51 46-102 (380)
272 PRK08227 autoinducer 2 aldolas 51.8 24 0.00052 28.4 4.0 50 4-55 164-213 (264)
273 PRK09423 gldA glycerol dehydro 51.5 43 0.00093 28.1 5.7 61 3-68 48-116 (366)
274 PRK00421 murC UDP-N-acetylmura 51.3 53 0.0012 28.4 6.3 42 1-42 20-77 (461)
275 cd01538 PBP1_ABC_xylose_bindin 51.0 62 0.0013 25.5 6.3 60 3-66 21-86 (288)
276 PRK09860 putative alcohol dehy 50.9 47 0.001 28.1 5.8 48 3-51 51-107 (383)
277 cd06274 PBP1_FruR Ligand bindi 50.4 73 0.0016 24.5 6.6 39 3-41 21-65 (264)
278 cd06305 PBP1_methylthioribose_ 50.2 67 0.0015 24.8 6.4 37 3-40 21-64 (273)
279 cd08191 HHD 6-hydroxyhexanoate 50.0 38 0.00081 28.7 5.1 49 3-52 42-99 (386)
280 cd08186 Fe-ADH8 Iron-containin 49.6 58 0.0013 27.5 6.2 48 3-51 47-103 (383)
281 cd08550 GlyDH-like Glycerol_de 49.5 44 0.00094 27.8 5.3 60 3-67 41-108 (349)
282 cd06267 PBP1_LacI_sugar_bindin 49.3 55 0.0012 24.8 5.7 57 3-66 21-84 (264)
283 cd06279 PBP1_LacI_like_3 Ligan 49.3 81 0.0018 24.7 6.7 38 3-40 26-65 (283)
284 cd06318 PBP1_ABC_sugar_binding 49.0 79 0.0017 24.6 6.6 37 3-39 21-63 (282)
285 cd00532 MGS-like MGS-like doma 49.0 83 0.0018 21.4 6.1 60 4-64 35-103 (112)
286 cd08176 LPO Lactadehyde:propan 48.9 50 0.0011 27.8 5.7 47 3-50 48-103 (377)
287 cd02065 B12-binding_like B12 b 48.7 45 0.00098 22.6 4.6 39 3-42 19-61 (125)
288 PRK04308 murD UDP-N-acetylmura 48.5 69 0.0015 27.5 6.6 42 1-42 18-78 (445)
289 TIGR01082 murC UDP-N-acetylmur 48.4 61 0.0013 27.9 6.2 42 1-42 12-69 (448)
290 cd08192 Fe-ADH7 Iron-containin 48.3 56 0.0012 27.4 5.9 49 3-52 44-101 (370)
291 cd06282 PBP1_GntR_like_2 Ligan 47.9 72 0.0016 24.4 6.2 60 3-67 21-86 (266)
292 PF13407 Peripla_BP_4: Peripla 47.2 65 0.0014 24.7 5.8 62 3-69 20-89 (257)
293 PF00532 Peripla_BP_1: Peripla 47.2 73 0.0016 25.4 6.2 38 3-40 23-65 (279)
294 cd08181 PPD-like 1,3-propanedi 47.1 67 0.0015 26.8 6.2 48 3-51 46-102 (357)
295 cd06277 PBP1_LacI_like_1 Ligan 47.0 79 0.0017 24.4 6.3 38 3-40 24-67 (268)
296 cd06296 PBP1_CatR_like Ligand- 47.0 1.1E+02 0.0024 23.5 7.1 38 3-40 21-64 (270)
297 cd01422 MGS Methylglyoxal synt 47.0 93 0.002 21.4 7.0 60 3-64 36-105 (115)
298 cd06324 PBP1_ABC_sugar_binding 46.5 1.1E+02 0.0023 24.5 7.1 38 3-40 22-67 (305)
299 PRK10423 transcriptional repre 46.1 1.3E+02 0.0028 24.0 7.6 39 3-41 78-122 (327)
300 cd08189 Fe-ADH5 Iron-containin 45.8 82 0.0018 26.4 6.5 49 3-52 46-103 (374)
301 cd08173 Gro1PDH Sn-glycerol-1- 45.6 44 0.00095 27.6 4.8 20 31-51 78-97 (339)
302 cd01542 PBP1_TreR_like Ligand- 45.3 1.1E+02 0.0025 23.3 6.9 38 3-40 21-64 (259)
303 cd00763 Bacterial_PFK Phosphof 45.3 13 0.00028 30.7 1.6 43 27-75 88-143 (317)
304 PRK00153 hypothetical protein; 45.0 81 0.0018 21.3 5.3 47 133-181 28-74 (104)
305 cd06283 PBP1_RegR_EndR_KdgR_li 45.0 1.1E+02 0.0024 23.4 6.8 38 3-40 21-64 (267)
306 cd06278 PBP1_LacI_like_2 Ligan 44.8 1.2E+02 0.0025 23.2 6.9 38 3-40 21-63 (266)
307 cd08190 HOT Hydroxyacid-oxoaci 44.8 67 0.0015 27.5 5.9 46 3-49 43-97 (414)
308 cd08551 Fe-ADH iron-containing 44.8 73 0.0016 26.6 6.0 47 3-50 43-98 (370)
309 cd06322 PBP1_ABC_sugar_binding 44.2 1.2E+02 0.0025 23.4 6.8 38 3-40 21-64 (267)
310 cd00764 Eukaryotic_PFK Phospho 44.1 17 0.00036 33.8 2.2 49 27-75 474-536 (762)
311 COG1214 Inactive homolog of me 44.0 30 0.00064 27.0 3.3 43 31-74 58-102 (220)
312 PF02575 YbaB_DNA_bd: YbaB/Ebf 43.8 90 0.0019 20.3 6.5 32 134-166 21-52 (93)
313 cd06275 PBP1_PurR Ligand-bindi 43.8 1.5E+02 0.0032 22.8 7.8 38 3-40 21-64 (269)
314 smart00851 MGS MGS-like domain 43.8 83 0.0018 20.3 5.1 60 4-64 23-89 (90)
315 cd06297 PBP1_LacI_like_12 Liga 42.9 1.4E+02 0.003 23.1 7.2 38 3-40 21-64 (269)
316 cd06314 PBP1_tmGBP Periplasmic 42.9 1.4E+02 0.003 23.1 7.2 38 3-40 20-64 (271)
317 TIGR02483 PFK_mixed phosphofru 42.8 16 0.00035 30.3 1.7 44 27-76 90-146 (324)
318 cd06301 PBP1_rhizopine_binding 42.8 1E+02 0.0022 23.8 6.4 38 3-40 21-65 (272)
319 PF12724 Flavodoxin_5: Flavodo 42.7 22 0.00048 25.3 2.3 62 4-68 19-83 (143)
320 cd06271 PBP1_AglR_RafR_like Li 42.6 1.3E+02 0.0028 23.0 6.9 38 3-40 25-68 (268)
321 cd08180 PDD 1,3-propanediol de 42.4 67 0.0014 26.5 5.4 35 31-66 78-115 (332)
322 TIGR02634 xylF D-xylose ABC tr 42.3 1.1E+02 0.0024 24.4 6.7 38 3-40 20-63 (302)
323 PRK10703 DNA-binding transcrip 42.3 1.6E+02 0.0034 23.8 7.6 38 3-40 81-124 (341)
324 cd02070 corrinoid_protein_B12- 42.3 61 0.0013 24.6 4.8 37 3-40 102-142 (201)
325 PLN02958 diacylglycerol kinase 42.1 32 0.0007 30.2 3.6 41 4-44 136-181 (481)
326 PF00465 Fe-ADH: Iron-containi 41.8 25 0.00055 29.3 2.8 38 3-40 41-87 (366)
327 PRK15408 autoinducer 2-binding 41.7 1.2E+02 0.0026 25.0 6.8 37 3-39 45-88 (336)
328 cd06319 PBP1_ABC_sugar_binding 41.6 1.2E+02 0.0027 23.3 6.7 37 3-40 21-64 (277)
329 KOG1273 WD40 repeat protein [G 41.5 31 0.00068 28.6 3.1 21 144-166 99-119 (405)
330 cd06313 PBP1_ABC_sugar_binding 41.4 1.1E+02 0.0025 23.8 6.4 37 3-39 21-63 (272)
331 cd08172 GlyDH-like1 Glycerol d 41.1 44 0.00096 27.7 4.1 32 31-67 76-107 (347)
332 TIGR02482 PFKA_ATP 6-phosphofr 41.0 18 0.00039 29.7 1.8 44 27-75 87-143 (301)
333 COG4242 CphB Cyanophycinase an 40.8 60 0.0013 26.1 4.5 74 2-75 71-155 (293)
334 cd05565 PTS_IIB_lactose PTS_II 40.7 44 0.00096 22.6 3.4 36 3-39 20-55 (99)
335 cd08175 G1PDH Glycerol-1-phosp 40.6 64 0.0014 26.8 5.0 19 31-50 80-98 (348)
336 PLN02699 Bifunctional molybdop 40.3 1.5E+02 0.0032 27.3 7.6 41 3-43 214-261 (659)
337 TIGR00853 pts-lac PTS system, 40.2 42 0.0009 22.4 3.2 37 2-39 22-58 (95)
338 PRK00843 egsA NAD(P)-dependent 40.2 53 0.0012 27.3 4.5 16 31-47 87-102 (350)
339 PRK02261 methylaspartate mutas 40.0 1.4E+02 0.003 21.3 6.4 39 3-42 23-65 (137)
340 cd06317 PBP1_ABC_sugar_binding 39.9 1.2E+02 0.0026 23.3 6.3 37 3-40 22-65 (275)
341 PRK10310 PTS system galactitol 39.8 68 0.0015 21.2 4.2 35 2-39 22-58 (94)
342 PRK09417 mogA molybdenum cofac 39.8 1.3E+02 0.0029 22.9 6.3 52 3-56 28-90 (193)
343 cd06315 PBP1_ABC_sugar_binding 39.6 98 0.0021 24.3 5.8 37 3-40 22-65 (280)
344 PRK13057 putative lipid kinase 39.5 1.1E+02 0.0024 24.5 6.2 42 3-44 18-63 (287)
345 COG0771 MurD UDP-N-acetylmuram 39.5 98 0.0021 27.0 6.0 40 2-41 21-79 (448)
346 cd06288 PBP1_sucrose_transcrip 39.4 1.7E+02 0.0037 22.4 7.1 38 3-40 22-65 (269)
347 cd08188 Fe-ADH4 Iron-containin 39.1 97 0.0021 26.1 5.9 18 31-49 85-102 (377)
348 PTZ00468 phosphofructokinase f 39.0 22 0.00048 34.9 2.2 50 27-76 192-256 (1328)
349 PRK09461 ansA cytoplasmic aspa 38.8 60 0.0013 27.0 4.6 36 31-66 233-270 (335)
350 cd08549 G1PDH_related Glycerol 38.6 64 0.0014 26.7 4.7 59 3-67 43-111 (332)
351 PF03358 FMN_red: NADPH-depend 38.3 33 0.00071 24.4 2.6 66 3-69 23-115 (152)
352 cd06293 PBP1_LacI_like_11 Liga 38.1 1.8E+02 0.004 22.3 7.3 38 3-40 21-64 (269)
353 cd05564 PTS_IIB_chitobiose_lic 37.7 48 0.001 22.0 3.2 37 3-40 19-55 (96)
354 TIGR03702 lip_kinase_YegS lipi 37.7 63 0.0014 26.1 4.5 42 3-44 19-65 (293)
355 TIGR01357 aroB 3-dehydroquinat 37.2 75 0.0016 26.3 4.9 33 33-68 83-115 (344)
356 PF11051 Mannosyl_trans3: Mann 37.2 21 0.00045 28.7 1.5 34 33-66 2-35 (271)
357 PRK13055 putative lipid kinase 37.2 71 0.0015 26.4 4.8 42 3-44 25-72 (334)
358 PRK15029 arginine decarboxylas 37.0 99 0.0021 28.9 6.0 64 2-67 23-92 (755)
359 TIGR01501 MthylAspMutase methy 36.7 1.5E+02 0.0033 21.2 5.8 36 3-39 21-60 (134)
360 TIGR01849 PHB_depoly_PhaZ poly 36.6 79 0.0017 27.2 5.0 63 2-75 121-184 (406)
361 PRK14571 D-alanyl-alanine synt 36.6 1.2E+02 0.0027 24.3 6.0 61 2-65 23-84 (299)
362 PRK13054 lipid kinase; Reviewe 36.5 72 0.0016 25.8 4.6 42 3-44 23-69 (300)
363 TIGR01754 flav_RNR ribonucleot 36.3 1.1E+02 0.0024 21.5 5.1 37 3-39 21-58 (140)
364 PF04230 PS_pyruv_trans: Polys 36.1 1.7E+02 0.0037 22.2 6.7 19 2-20 10-28 (286)
365 PRK11303 DNA-binding transcrip 36.0 2.3E+02 0.0049 22.7 7.6 38 3-40 83-126 (328)
366 cd06310 PBP1_ABC_sugar_binding 35.7 1.7E+02 0.0038 22.4 6.7 38 3-40 21-66 (273)
367 TIGR02990 ectoine_eutA ectoine 35.6 82 0.0018 24.9 4.7 61 3-67 137-213 (239)
368 cd08182 HEPD Hydroxyethylphosp 35.5 1.2E+02 0.0026 25.3 6.0 48 3-51 40-96 (367)
369 PF02302 PTS_IIB: PTS system, 35.3 47 0.001 21.3 2.8 38 2-40 19-56 (90)
370 PRK00002 aroB 3-dehydroquinate 35.3 86 0.0019 26.2 5.0 32 33-67 94-125 (358)
371 cd06300 PBP1_ABC_sugar_binding 35.2 1.3E+02 0.0028 23.2 5.8 37 3-40 21-69 (272)
372 cd06316 PBP1_ABC_sugar_binding 35.2 2.1E+02 0.0047 22.4 7.2 37 3-39 21-64 (294)
373 cd08195 DHQS Dehydroquinate sy 35.2 97 0.0021 25.7 5.3 33 33-68 87-119 (345)
374 PF03709 OKR_DC_1_N: Orn/Lys/A 35.0 8.1 0.00018 26.7 -1.0 67 2-68 8-75 (115)
375 TIGR00640 acid_CoA_mut_C methy 34.9 91 0.002 22.1 4.4 38 3-41 22-63 (132)
376 cd06308 PBP1_sensor_kinase_lik 34.9 2.1E+02 0.0046 22.0 7.2 38 3-40 21-65 (270)
377 cd02068 radical_SAM_B12_BD B12 34.7 76 0.0017 21.9 4.0 37 3-39 8-47 (127)
378 cd06286 PBP1_CcpB_like Ligand- 34.7 2.1E+02 0.0045 21.8 7.2 38 3-40 21-64 (260)
379 PF02056 Glyco_hydro_4: Family 34.5 50 0.0011 25.1 3.1 20 58-77 158-177 (183)
380 PF13941 MutL: MutL protein 34.5 1.6E+02 0.0035 25.8 6.5 60 6-65 96-160 (457)
381 PRK11914 diacylglycerol kinase 34.4 66 0.0014 26.1 4.1 42 3-44 31-77 (306)
382 PF00258 Flavodoxin_1: Flavodo 34.1 87 0.0019 21.9 4.3 33 3-37 17-51 (143)
383 cd01540 PBP1_arabinose_binding 34.0 1.3E+02 0.0029 23.4 5.8 37 3-40 21-63 (289)
384 PRK03803 murD UDP-N-acetylmura 33.8 1.7E+02 0.0038 25.0 6.8 19 1-19 19-37 (448)
385 cd07766 DHQ_Fe-ADH Dehydroquin 33.7 93 0.002 25.5 4.9 34 31-67 78-111 (332)
386 cd05014 SIS_Kpsf KpsF-like pro 33.3 91 0.002 21.2 4.2 63 4-68 19-82 (128)
387 cd01544 PBP1_GalR Ligand-bindi 33.3 1.9E+02 0.004 22.4 6.5 35 3-39 26-60 (270)
388 PRK14569 D-alanyl-alanine synt 33.2 1.9E+02 0.0041 23.3 6.6 36 2-37 26-62 (296)
389 cd06276 PBP1_FucR_like Ligand- 33.1 1.7E+02 0.0038 22.5 6.2 39 2-40 19-61 (247)
390 cd08184 Fe-ADH3 Iron-containin 32.8 1.1E+02 0.0024 25.5 5.2 19 31-50 81-99 (347)
391 PRK03202 6-phosphofructokinase 32.7 20 0.00044 29.6 0.9 18 27-44 89-106 (320)
392 PRK05395 3-dehydroquinate dehy 32.7 1.3E+02 0.0029 21.9 4.9 36 3-40 35-76 (146)
393 cd06289 PBP1_MalI_like Ligand- 32.7 1.7E+02 0.0036 22.3 6.1 38 3-40 21-64 (268)
394 TIGR01088 aroQ 3-dehydroquinat 32.6 1.6E+02 0.0035 21.3 5.3 35 4-40 34-74 (141)
395 PRK09526 lacI lac repressor; R 32.4 2.7E+02 0.0058 22.4 7.8 36 3-38 85-127 (342)
396 cd06294 PBP1_ycjW_transcriptio 32.2 2.3E+02 0.005 21.6 7.0 38 3-40 26-69 (270)
397 PRK10355 xylF D-xylose transpo 32.1 1.6E+02 0.0034 24.1 6.0 38 3-40 47-90 (330)
398 TIGR02955 TMAO_TorT TMAO reduc 32.1 1.4E+02 0.0031 23.6 5.7 37 3-39 21-65 (295)
399 PRK13337 putative lipid kinase 31.9 1E+02 0.0022 25.0 4.8 42 3-44 24-70 (304)
400 cd06354 PBP1_BmpA_PnrA_like Pe 31.8 2.2E+02 0.0048 22.1 6.7 38 3-40 24-66 (265)
401 cd06329 PBP1_SBP_like_3 Peripl 31.7 2.1E+02 0.0045 23.3 6.7 73 3-78 163-245 (342)
402 PTZ00468 phosphofructokinase f 31.6 37 0.0008 33.5 2.4 49 27-75 796-864 (1328)
403 PLN02204 diacylglycerol kinase 31.3 53 0.0012 29.7 3.2 43 3-45 182-232 (601)
404 PF03437 BtpA: BtpA family; I 31.3 77 0.0017 25.4 3.9 65 3-69 130-208 (254)
405 PF00455 DeoRC: DeoR C termina 31.2 78 0.0017 23.1 3.7 64 3-67 34-101 (161)
406 cd06270 PBP1_GalS_like Ligand 31.2 2.4E+02 0.0052 21.6 7.2 38 3-40 21-64 (268)
407 cd06291 PBP1_Qymf_like Ligand 31.0 2.4E+02 0.0051 21.6 6.7 38 3-40 21-64 (265)
408 cd06285 PBP1_LacI_like_7 Ligan 31.0 2.4E+02 0.0053 21.5 6.8 37 3-39 21-63 (265)
409 cd06323 PBP1_ribose_binding Pe 31.0 1.6E+02 0.0034 22.5 5.6 36 3-39 21-63 (268)
410 KOG0283 WD40 repeat-containing 30.7 71 0.0015 29.5 3.9 51 112-164 360-420 (712)
411 TIGR02478 6PF1K_euk 6-phosphof 30.6 34 0.00073 31.8 2.0 50 27-76 474-537 (745)
412 PRK02006 murD UDP-N-acetylmura 30.6 2.1E+02 0.0045 25.0 6.8 19 1-19 20-38 (498)
413 TIGR03682 arCOG04112 arCOG0411 30.5 1.5E+02 0.0032 24.4 5.5 44 3-46 234-277 (308)
414 PF07505 Gp37_Gp68: Phage prot 30.4 1.7E+02 0.0038 23.5 5.7 63 6-69 159-230 (261)
415 cd08199 EEVS 2-epi-5-epi-valio 30.3 1.1E+02 0.0024 25.6 4.9 63 3-68 45-122 (354)
416 cd01139 TroA_f Periplasmic bin 30.3 1.7E+02 0.0037 23.9 6.0 45 22-68 82-126 (342)
417 PRK13015 3-dehydroquinate dehy 30.2 1.7E+02 0.0036 21.4 5.1 36 3-40 35-76 (146)
418 cd06306 PBP1_TorT-like TorT-li 30.0 2.6E+02 0.0057 21.6 7.2 38 3-40 21-66 (268)
419 COG2247 LytB Putative cell wal 29.9 84 0.0018 26.1 3.9 38 7-44 48-88 (337)
420 cd01537 PBP1_Repressors_Sugar_ 29.8 2.4E+02 0.0052 21.1 6.7 39 3-41 21-65 (264)
421 cd06302 PBP1_LsrB_Quorum_Sensi 29.5 2.4E+02 0.0053 22.3 6.6 36 3-39 21-64 (298)
422 PRK09701 D-allose transporter 29.2 2.2E+02 0.0049 22.8 6.4 38 3-40 46-91 (311)
423 cd06272 PBP1_hexuronate_repres 29.1 1.8E+02 0.0039 22.2 5.7 38 3-40 21-60 (261)
424 TIGR01319 glmL_fam conserved h 28.9 2E+02 0.0043 25.3 6.2 60 6-65 92-156 (463)
425 COG1656 Uncharacterized conser 28.9 92 0.002 23.2 3.6 36 2-39 17-54 (165)
426 PRK10586 putative oxidoreducta 28.8 95 0.0021 26.1 4.2 58 4-67 54-117 (362)
427 PRK11921 metallo-beta-lactamas 28.8 2.7E+02 0.0058 23.6 7.0 37 3-39 268-308 (394)
428 cd06312 PBP1_ABC_sugar_binding 28.6 2.1E+02 0.0045 22.1 6.0 61 3-67 22-89 (271)
429 cd00636 TroA-like Helical back 28.5 1.8E+02 0.004 19.4 5.7 43 20-69 50-92 (148)
430 PF08497 Radical_SAM_N: Radica 28.4 3.4E+02 0.0073 22.4 7.8 40 3-42 38-80 (302)
431 PRK14071 6-phosphofructokinase 28.1 32 0.0007 28.9 1.3 46 26-76 102-160 (360)
432 PRK14987 gluconate operon tran 28.0 3E+02 0.0065 22.0 7.0 37 3-39 85-127 (331)
433 cd05569 PTS_IIB_fructose PTS_I 28.0 1.8E+02 0.004 19.2 4.9 37 3-41 21-63 (96)
434 PRK03369 murD UDP-N-acetylmura 27.8 2E+02 0.0043 25.2 6.2 17 2-18 26-42 (488)
435 PRK05928 hemD uroporphyrinogen 27.8 34 0.00073 26.3 1.3 76 3-82 16-103 (249)
436 cd01539 PBP1_GGBP Periplasmic 27.7 2.1E+02 0.0045 22.8 6.0 60 3-66 21-88 (303)
437 smart00427 H2B Histone H2B. 27.3 69 0.0015 21.3 2.5 26 160-185 13-38 (89)
438 KOG1314 DHHC-type Zn-finger pr 27.2 26 0.00056 29.4 0.6 32 155-190 74-105 (414)
439 TIGR01838 PHA_synth_I poly(R)- 27.2 81 0.0017 28.2 3.7 19 2-20 211-229 (532)
440 PF14359 DUF4406: Domain of un 27.2 1.8E+02 0.004 19.2 4.6 59 3-64 21-90 (92)
441 PRK09590 celB cellobiose phosp 27.0 1.1E+02 0.0023 20.8 3.5 37 3-39 21-58 (104)
442 PF01220 DHquinase_II: Dehydro 26.9 1.3E+02 0.0028 21.8 4.0 36 3-40 34-75 (140)
443 TIGR02417 fruct_sucro_rep D-fr 26.9 3.3E+02 0.0071 21.7 7.6 38 3-40 82-125 (327)
444 cd01423 MGS_CPS_I_III Methylgl 26.8 1.1E+02 0.0023 20.8 3.6 60 4-64 36-105 (116)
445 cd00466 DHQase_II Dehydroquina 26.8 1.7E+02 0.0038 21.1 4.7 36 3-40 33-74 (140)
446 cd01536 PBP1_ABC_sugar_binding 26.8 2.6E+02 0.0057 21.1 6.2 38 3-40 21-64 (267)
447 cd08197 DOIS 2-deoxy-scyllo-in 26.7 1.7E+02 0.0037 24.5 5.4 32 34-68 87-118 (355)
448 PRK10653 D-ribose transporter 26.7 2.4E+02 0.0052 22.2 6.2 38 3-40 48-91 (295)
449 PRK10014 DNA-binding transcrip 26.6 2.3E+02 0.0049 22.8 6.1 39 3-41 86-130 (342)
450 KOG4435 Predicted lipid kinase 26.2 69 0.0015 27.6 2.9 38 7-44 88-129 (535)
451 PRK05234 mgsA methylglyoxal sy 26.1 2.5E+02 0.0055 20.2 7.5 76 3-78 41-124 (142)
452 PRK01710 murD UDP-N-acetylmura 25.9 2.5E+02 0.0053 24.3 6.4 19 1-19 27-45 (458)
453 TIGR01012 Sa_S2_E_A ribosomal 25.9 1E+02 0.0022 23.7 3.5 11 57-67 128-138 (196)
454 COG1736 DPH2 Diphthamide synth 25.5 1.5E+02 0.0034 24.9 4.8 46 2-47 258-304 (347)
455 PLN00158 histone H2B; Provisio 25.5 81 0.0018 22.0 2.6 28 158-185 37-64 (116)
456 PF08901 DUF1847: Protein of u 25.3 2.8E+02 0.0062 20.5 6.5 72 3-77 73-149 (157)
457 TIGR01481 ccpA catabolite cont 25.2 3.5E+02 0.0077 21.5 7.5 38 3-40 81-124 (329)
458 PRK10936 TMAO reductase system 25.0 3.2E+02 0.007 22.3 6.7 59 3-66 68-134 (343)
459 TIGR03151 enACPred_II putative 24.8 2.9E+02 0.0062 22.6 6.3 79 3-82 101-187 (307)
460 KOG0721 Molecular chaperone (D 24.7 8.9 0.00019 29.9 -2.4 52 132-185 100-151 (230)
461 PF00763 THF_DHG_CYH: Tetrahyd 24.7 1.2E+02 0.0026 20.9 3.5 36 3-38 50-94 (117)
462 PRK06372 translation initiatio 24.6 2.2E+02 0.0047 22.8 5.3 63 3-68 126-193 (253)
463 PRK01368 murD UDP-N-acetylmura 24.6 3.2E+02 0.007 23.7 6.9 40 2-42 20-74 (454)
464 PF08532 Glyco_hydro_42M: Beta 24.6 86 0.0019 23.9 3.0 31 3-39 35-65 (207)
465 cd06321 PBP1_ABC_sugar_binding 24.4 2.4E+02 0.0052 21.7 5.6 36 3-39 21-65 (271)
466 PRK14048 ferrichrome/ferrioxam 24.3 2.8E+02 0.006 23.1 6.3 47 21-69 111-157 (374)
467 cd02069 methionine_synthase_B1 24.2 2.2E+02 0.0047 22.0 5.2 36 4-40 109-148 (213)
468 PRK00141 murD UDP-N-acetylmura 24.1 2.6E+02 0.0055 24.4 6.2 18 1-18 28-45 (473)
469 COG0205 PfkA 6-phosphofructoki 24.1 1.2E+02 0.0027 25.4 4.0 19 27-45 90-108 (347)
470 TIGR02637 RhaS rhamnose ABC tr 24.0 3.1E+02 0.0068 21.6 6.4 37 3-39 20-64 (302)
471 cd01453 vWA_transcription_fact 23.9 1.7E+02 0.0037 21.8 4.5 27 59-85 135-166 (183)
472 cd06557 KPHMT-like Ketopantoat 23.8 1.8E+02 0.0038 23.3 4.7 33 31-70 171-203 (254)
473 PRK09468 ompR osmolarity respo 23.8 2.9E+02 0.0063 20.7 5.9 64 3-68 21-85 (239)
474 TIGR00288 conserved hypothetic 23.8 3.1E+02 0.0067 20.3 5.8 59 3-67 71-136 (160)
475 PF10230 DUF2305: Uncharacteri 23.6 57 0.0012 26.0 1.9 34 34-67 5-39 (266)
476 COG3453 Uncharacterized protei 23.6 1.3E+02 0.0028 21.3 3.4 11 59-69 86-96 (130)
477 PF01606 Arteri_env: Arterivir 23.3 14 0.00031 27.7 -1.5 12 155-166 118-129 (214)
478 cd06167 LabA_like LabA_like pr 23.3 2.5E+02 0.0054 19.7 5.1 63 2-69 56-132 (149)
479 PF00781 DAGK_cat: Diacylglyce 23.2 90 0.002 21.6 2.7 41 3-43 20-66 (130)
480 PF14340 DUF4395: Domain of un 23.1 28 0.00061 24.8 0.1 13 63-75 115-127 (131)
481 cd01147 HemV-2 Metal binding p 23.1 3.3E+02 0.0071 20.9 6.2 44 21-69 64-107 (262)
482 PTZ00463 histone H2B; Provisio 22.9 97 0.0021 21.7 2.6 26 160-185 40-65 (117)
483 PRK15341 invasion lipoprotein 22.9 29 0.00062 24.1 0.0 26 158-183 98-124 (147)
484 PRK10401 DNA-binding transcrip 22.8 3.9E+02 0.0086 21.5 6.8 38 3-40 81-124 (346)
485 TIGR03436 acidobact_VWFA VWFA- 22.6 1.5E+02 0.0033 23.7 4.3 50 34-84 168-238 (296)
486 PTZ00445 p36-lilke protein; Pr 22.6 2.7E+02 0.0059 21.8 5.3 61 3-73 34-104 (219)
487 COG1983 PspC Putative stress-r 22.5 49 0.0011 20.9 1.1 21 55-78 6-26 (70)
488 TIGR01205 D_ala_D_alaTIGR D-al 22.5 3.4E+02 0.0074 21.7 6.3 20 2-21 22-41 (315)
489 cd01451 vWA_Magnesium_chelatas 22.5 3.1E+02 0.0068 19.9 6.2 28 58-85 130-165 (178)
490 PF02602 HEM4: Uroporphyrinoge 22.4 89 0.0019 23.8 2.8 76 2-81 2-94 (231)
491 cd01543 PBP1_XylR Ligand-bindi 22.3 3.1E+02 0.0067 21.0 5.9 37 3-39 20-58 (265)
492 TIGR00259 thylakoid_BtpA membr 22.3 1.5E+02 0.0033 23.8 4.0 46 31-77 171-218 (257)
493 TIGR00443 hisZ_biosyn_reg ATP 22.3 2.2E+02 0.0047 23.2 5.2 71 3-77 237-312 (314)
494 TIGR01081 mpl UDP-N-acetylmura 22.2 4.9E+02 0.011 22.3 7.5 18 2-19 14-31 (448)
495 PF00389 2-Hacid_dh: D-isomer 22.1 2.6E+02 0.0056 19.3 4.9 35 4-41 12-48 (133)
496 PRK00311 panB 3-methyl-2-oxobu 22.1 2E+02 0.0042 23.2 4.7 33 31-70 174-206 (264)
497 PTZ00287 6-phosphofructokinase 21.8 64 0.0014 32.2 2.1 47 27-75 924-987 (1419)
498 PRK00726 murG undecaprenyldiph 21.8 1.5E+02 0.0032 24.2 4.1 48 10-68 233-280 (357)
499 PTZ00254 40S ribosomal protein 21.7 1.6E+02 0.0035 23.6 4.0 11 57-67 138-148 (249)
500 PF04741 InvH: InvH outer memb 21.6 30 0.00065 24.4 -0.1 26 159-184 99-125 (147)
No 1
>PLN02335 anthranilate synthase
Probab=100.00 E-value=6.6e-43 Score=272.31 Aligned_cols=189 Identities=86% Similarity=1.378 Sum_probs=165.3
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||+++|+++|+++++++++..+.+++...++|+|||+|||+++.+.+...+.+++.+.++||||||+|||+|+.++||+
T Consensus 32 ~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIClG~QlLa~alGg~ 111 (222)
T PLN02335 32 YNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 111 (222)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEecHHHHHHHHHhCCE
Confidence 37899999999999999987667777766689999999999999988776677777788899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+...+..+|.+.++......++++|++++..+.++++|++.|+.++++...++++|+++++.+++++++++|++||+|
T Consensus 112 v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQ 191 (222)
T PLN02335 112 IVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQ 191 (222)
T ss_pred EEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEE
Confidence 99987655688888887765556789999999999999999999876676555999999999999999999887799999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHhhhh
Q 029484 161 FHPESIITTEGKTIVRNFIKMIVRKEAAD 189 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~~~~~~~ 189 (192)
||||+..+++|..||++|++.+.+.++++
T Consensus 192 fHPE~~~~~~g~~i~~nF~~~~~~~~~~~ 220 (222)
T PLN02335 192 FHPESIITTEGKTIVRNFIKIIEKKESEK 220 (222)
T ss_pred eCCCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 99999988899999999999887665543
No 2
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.4e-42 Score=253.85 Aligned_cols=175 Identities=51% Similarity=0.933 Sum_probs=157.9
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||++++++.|.++.|+++++.+.++++..++|+|||++|||+|.+.+...+.++++..++||||||+|||.|++++||+
T Consensus 15 yNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~ 94 (191)
T COG0512 15 YNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGK 94 (191)
T ss_pred HHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECccHHHHHHHhCCE
Confidence 48999999999999999988777777887889999999999999999988899998888899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC-CceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~ 159 (192)
|.+.. ...||....+... ...+|+++|+++.+..+|+-.+.++.+| +.++++|+++| +.|+|++++++| ++|+
T Consensus 95 V~~a~-~~~HGK~s~i~h~---g~~iF~glp~~f~v~RYHSLvv~~~~lP-~~l~vtA~~~d~~~IMai~h~~~p-i~gv 168 (191)
T COG0512 95 VVRAK-EPMHGKTSIITHD---GSGLFAGLPNPFTVTRYHSLVVDPETLP-EELEVTAESEDGGVIMAVRHKKLP-IYGV 168 (191)
T ss_pred EEecC-CCcCCeeeeeecC---CcccccCCCCCCEEEeeEEEEecCCCCC-CceEEEEEeCCCCEEEEEeeCCCC-EEEE
Confidence 99998 4668887744443 4679999999999999999999877766 78999999866 599999999998 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
|||||...++.|.+|++||++.
T Consensus 169 QFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 169 QFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred ecCCccccccchHHHHHHHHhh
Confidence 9999999999999999999975
No 3
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=5.2e-41 Score=256.97 Aligned_cols=178 Identities=46% Similarity=0.893 Sum_probs=154.8
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.||+++|++.|.++.++++++.+.+++...++|+|||+|||+++.+.+.....++.+.+++|+||||+|||+|+.++||+
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIClG~Qlla~~lGg~ 92 (195)
T PRK07649 13 FNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGE 92 (195)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcHHHHHHHHHcCCE
Confidence 37999999999999999987677777776789999999999999988777777777778999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+|.+..+... .+++|++++..+.+++||++.+..+++ +++++++|.++++.++|+++++++ +||+|
T Consensus 93 V~~~~~-~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~H~~~v~~~~l-p~~~~~~a~s~~~~v~a~~~~~~~-i~gvQ 166 (195)
T PRK07649 93 VVRAER-LMHGKTSLMHHD---GKTIFSDIPNPFTATRYHSLIVKKETL-PDCLEVTSWTEEGEIMAIRHKTLP-IEGVQ 166 (195)
T ss_pred EeeCCC-cccCCeEEEEEC---CChhhcCCCCCCEEEEechheEecccC-CCCeEEEEEcCCCcEEEEEECCCC-EEEEE
Confidence 999874 457777655432 467999999999999999999854344 478999999999999999999887 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
||||...++.|..|+++|++.+..
T Consensus 167 FHPE~~~t~~g~~il~nfl~~~~~ 190 (195)
T PRK07649 167 FHPESIMTSHGKELLQNFIRKYSP 190 (195)
T ss_pred ECCCCCCCccHHHHHHHHHHHhHh
Confidence 999998888999999999997764
No 4
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=3.9e-41 Score=256.33 Aligned_cols=174 Identities=44% Similarity=0.856 Sum_probs=151.8
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.||+++|++.|+++.++++++.+.+++...++|+|||+|||+++.+.+...+.++.+.+++|+||||+|+|+|+.++||+
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIClG~Q~la~a~Gg~ 92 (187)
T PRK08007 13 WNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGK 92 (187)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECHHHHHHHHHcCCE
Confidence 37999999999999999987677888877789999999999999888766666666778999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+... ..+|.+.++... .+.+|++++..+.++++|++.|...++ +++++++|+++++.++|+++.+.| ++|+|
T Consensus 93 v~~~~~-~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~v~a~~~~~~i~a~~~~~~~-i~GvQ 166 (187)
T PRK08007 93 VVRAAK-VMHGKTSPITHN---GEGVFRGLANPLTVTRYHSLVVEPDSL-PACFEVTAWSETREIMGIRHRQWD-LEGVQ 166 (187)
T ss_pred EEeCCC-cccCCceEEEEC---CCCcccCCCCCcEEEEcchhEEccCCC-CCCeEEEEEeCCCcEEEEEeCCCC-EEEEE
Confidence 999874 357777666544 456899998889999999999964444 478999999999999999999877 99999
Q ss_pred ccCCCCCCCchHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~ 180 (192)
||||+..++.|.+||+||++
T Consensus 167 fHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 167 FHPESILSEQGHQLLANFLH 186 (187)
T ss_pred eCCcccCCcchHHHHHHHhh
Confidence 99999888899999999986
No 5
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=6.4e-40 Score=249.90 Aligned_cols=174 Identities=45% Similarity=0.842 Sum_probs=149.1
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||+++++++|+++.+++++..+.+++...++|||||+|||+++.+.....+.++++.+++||||||+|||+|+.++||+
T Consensus 13 ~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Qll~~~~GG~ 92 (188)
T TIGR00566 13 YNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGD 92 (188)
T ss_pred HHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECHHHHHHHHHcCCE
Confidence 47899999999999999987677888877789999999999999876655566666677899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCC-ceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g~ 159 (192)
+.+.. ...+|.+..+... .++++.++++++.++++|++.+..+.+ +++++++|+++++ .++|++++++| +||+
T Consensus 93 v~~~~-~~~~g~~~~v~~~---~~~~~~~l~~~~~v~~~H~~~v~~~~l-~~~~~v~a~s~~~~~v~a~~~~~~~-i~gv 166 (188)
T TIGR00566 93 VVRAN-TVMHGKTSEIEHN---GAGIFRGLFNPLTATRYHSLVVEPETL-PTCFPVTAWEEENIEIMAIRHRDLP-LEGV 166 (188)
T ss_pred EeeCC-CccccceEEEEEC---CCccccCCCCCcEEEEcccceEecccC-CCceEEEEEcCCCCEEEEEEeCCCC-EEEE
Confidence 99987 4457877777654 456788887789999999999964444 4689999999875 99999999987 9999
Q ss_pred eccCCCCCCCchHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~ 180 (192)
|||||+..++.|.+||+||+.
T Consensus 167 QfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 167 QFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EeCCCccCCcccHHHHHHHHh
Confidence 999999888999999999985
No 6
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=7.2e-40 Score=249.99 Aligned_cols=176 Identities=53% Similarity=0.987 Sum_probs=149.0
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.+++++|+++|+++++++++..+.+++...++||||++|||+++.+.....+.++++..++||||||+|||+|+.++||+
T Consensus 13 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIClG~Qlla~alGg~ 92 (189)
T PRK05670 13 YNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGK 92 (189)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCE
Confidence 37899999999999999987556666666679999999999999877666666666777899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+|.+.++.. ..+++|++++..+.++++|++.|....+ +++++++|+++++.++|+++++++ +||+|
T Consensus 93 v~~~~~-~~~g~~~~v~~---~~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~~la~s~~~~i~a~~~~~~~-~~gvQ 166 (189)
T PRK05670 93 VVRAKE-IMHGKTSPIEH---DGSGIFAGLPNPFTVTRYHSLVVDRESL-PDCLEVTAWTDDGEIMGVRHKELP-IYGVQ 166 (189)
T ss_pred EEecCC-cccCceeEEEe---CCCchhccCCCCcEEEcchhheeccccC-CCceEEEEEeCCCcEEEEEECCCC-EEEEe
Confidence 999874 34666655552 2567899988889999999999953334 478999999999999999998877 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~ 182 (192)
||||+..++++.+||++|++++
T Consensus 167 fHPE~~~~~~g~~i~~~F~~~~ 188 (189)
T PRK05670 167 FHPESILTEHGHKLLENFLELA 188 (189)
T ss_pred eCCCcCCCcchHHHHHHHHHhh
Confidence 9999987789999999999874
No 7
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=1.2e-39 Score=248.89 Aligned_cols=175 Identities=54% Similarity=0.978 Sum_probs=148.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
||+++|++.|+++.+++.+..+.+++...++||||++|||+++.+.......++.+++++|+||||+|||+|+.++||+|
T Consensus 14 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V 93 (190)
T CHL00101 14 NLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKI 93 (190)
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEE
Confidence 78999999999999999876677777666899999999999998765444444457789999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEec
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQF 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Qf 161 (192)
.+.+. ..+|.+..+.. ..+++|.+++..+.++++|++.|+..++ +++++++|+++++.+++++++++|++||+||
T Consensus 94 ~~~~~-~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~vla~s~~~~v~a~~~~~~~~i~gvQf 168 (190)
T CHL00101 94 IKAPK-PMHGKTSKIYH---NHDDLFQGLPNPFTATRYHSLIIDPLNL-PSPLEITAWTEDGLIMACRHKKYKMLRGIQF 168 (190)
T ss_pred EECCC-cccCceeeEee---CCcHhhccCCCceEEEcchhheeecccC-CCceEEEEEcCCCcEEEEEeCCCCCEEEEEe
Confidence 99874 34777766543 2567999999899999999999964334 4689999999999999999998766999999
Q ss_pred cCCCCCCCchHHHHHHHHHH
Q 029484 162 HPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 162 HPE~~~~~~~~~l~~~f~~~ 181 (192)
|||+..++.|.+|++||++.
T Consensus 169 HPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 169 HPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred CCccCCChhHHHHHHHHHhh
Confidence 99998778999999999874
No 8
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=5.6e-39 Score=245.49 Aligned_cols=174 Identities=44% Similarity=0.852 Sum_probs=146.1
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.||+++|++.|.++.+++++..+.+++...++|+|||+|||+++.+.+.....++.+++++||||||+|||+|+.++||+
T Consensus 13 ~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~G~Qlla~~~GG~ 92 (191)
T PRK06774 13 YNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGAR 92 (191)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECHHHHHHHHHhCCE
Confidence 37999999999999999987677888887789999999999999988777677777788999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCC----ceEEEeeCCCCce
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG----LIMAARHKKYKHL 156 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~----~i~ai~~~~~~~~ 156 (192)
+.+... .++|....... ..+++|++++..+.++++|++.+...++ ++++.++|+++++ .++++++++.| +
T Consensus 93 v~~~~~-~~~G~~~~~~~---~~~~lf~~l~~~~~v~~~Hs~~v~~~~l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~-i 166 (191)
T PRK06774 93 VVRARQ-VMHGKTSAICH---SGQGVFRGLNQPLTVTRYHSLVIAADSL-PGCFELTAWSERGGEMDEIMGIRHRTLP-L 166 (191)
T ss_pred EEeCCc-ceecceEEEEe---cCchhhcCCCCCcEEEEeCcceeeccCC-CCCeEEEEEeCCCCCcceEEEEEeCCCC-E
Confidence 999874 44665443332 2567899998889999999999853334 4789999998643 47788888776 9
Q ss_pred EEEeccCCCCCCCchHHHHHHHHH
Q 029484 157 QGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 157 ~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
||+|||||+.++++|.+||+||++
T Consensus 167 ~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 167 EGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred EEEEECCCcCCCccHHHHHHHHhh
Confidence 999999999878899999999985
No 9
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=1.5e-38 Score=242.84 Aligned_cols=172 Identities=33% Similarity=0.613 Sum_probs=145.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
|++++|+++|.++.++++++.+.+++. ++|+|||+|||+++.+.....+.++++++++|+||||+|||+|+.++||+|
T Consensus 16 ~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlla~~~Gg~V 93 (190)
T PRK06895 16 NLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGEL 93 (190)
T ss_pred HHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcHHHHHHHHHhCCeE
Confidence 689999999999999997654555555 799999999999875545555566667789999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEec
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQF 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Qf 161 (192)
.+.+. ..+|.+..+... .++++|++++..+.++++|++.+...+++ +++.+++.++++.+++++++++| +||+||
T Consensus 94 ~~~~~-~~~g~~~~v~~~--~~~~l~~~~~~~~~v~~~Hs~~v~~~~lp-~~l~~~a~~~~~~i~a~~~~~~p-i~GvQF 168 (190)
T PRK06895 94 YNLNN-VRHGQQRPLKVR--SNSPLFDGLPEEFNIGLYHSWAVSEENFP-TPLEITAVCDENVVMAMQHKTLP-IYGVQF 168 (190)
T ss_pred eecCC-CccCceEEEEEC--CCChhhhcCCCceEEEcchhheecccccC-CCeEEEEECCCCcEEEEEECCCC-EEEEEe
Confidence 88763 457887766543 36789999999999999999999744444 68999999999999999999987 999999
Q ss_pred cCCCCCCCchHHHHHHHHH
Q 029484 162 HPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 162 HPE~~~~~~~~~l~~~f~~ 180 (192)
|||+..++.|..|++||++
T Consensus 169 HPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 169 HPESYISEFGEQILRNWLA 187 (190)
T ss_pred CCCcCCCcchHHHHHHHHh
Confidence 9999888999999999986
No 10
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=3.7e-38 Score=241.22 Aligned_cols=174 Identities=43% Similarity=0.815 Sum_probs=146.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
||+++|+++|+.+.+++++..+.+++...++|++|++|||+++.+.....+.++.+++++|+||||+|||+|+.++||++
T Consensus 14 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlia~a~Gg~v 93 (193)
T PRK08857 14 NLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQV 93 (193)
T ss_pred HHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcHHHHHHHHHhCCEE
Confidence 78999999999999999875666666666899999999999998877776777777889999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC--C---CceEEEeeCCCCce
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--D---GLIMAARHKKYKHL 156 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~--~---~~i~ai~~~~~~~~ 156 (192)
.+.+. ..+|....+... .+++|.+++..+.+++||++.+...++ +++++++|+++ + +.+++++++++| +
T Consensus 94 ~~~~~-~~~G~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~p-i 167 (193)
T PRK08857 94 VRARQ-VMHGKTSPIRHT---GRSVFKGLNNPLTVTRYHSLVVKNDTL-PECFELTAWTELEDGSMDEIMGFQHKTLP-I 167 (193)
T ss_pred EeCCC-ceeCceEEEEEC---CCcccccCCCccEEEEccEEEEEcCCC-CCCeEEEEEecCcCCCcceEEEEEeCCCC-E
Confidence 99874 346664444433 467999998889999999999864444 47899999886 4 358999999987 9
Q ss_pred EEEeccCCCCCCCchHHHHHHHHHH
Q 029484 157 QGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 157 ~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
||+|||||+..+++|.+||+||++.
T Consensus 168 ~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 168 EAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred EEEeeCCCcCCCcchHHHHHHHHhh
Confidence 9999999999888999999999863
No 11
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=9.1e-38 Score=237.50 Aligned_cols=170 Identities=54% Similarity=0.921 Sum_probs=141.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
++.++++++|+++++++++..........++||||++||++++.+...+...++.+.+++|+||||+|||+|+.++||++
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v 92 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKV 92 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEE
Confidence 57899999999999999865443322334899999999999987766544444456678999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCC--eEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
.+.+. ..++.+.++... ++++|++++..+.++++|++.+.. ++.+ ++++|.++++.++|++++++| +||+
T Consensus 93 ~~~~~-~~~g~~~~v~~~---~~~~~~~~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~~~~~v~a~~~~~~~-i~gv 164 (184)
T cd01743 93 VRAPE-PMHGKTSEIHHD---GSGLFKGLPQPFTVGRYHSLVVDP---DPLPDLLEVTASTEDGVIMALRHRDLP-IYGV 164 (184)
T ss_pred EeCCC-CCcCceeEEEEC---CCccccCCCCCcEEEeCcEEEEec---CCCCceEEEEEeCCCCeEEEEEeCCCC-EEEE
Confidence 99874 346666666554 567899999999999999999975 4444 899999999999999999887 9999
Q ss_pred eccCCCCCCCchHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~ 179 (192)
|||||+..++.|.+||+||+
T Consensus 165 QfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 165 QFHPESILTEYGLRLLENFL 184 (184)
T ss_pred eeCCCcCCCcchHHHHHhhC
Confidence 99999988899999999995
No 12
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=4.2e-37 Score=237.28 Aligned_cols=176 Identities=31% Similarity=0.563 Sum_probs=144.0
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+|+++.|+.+|+.+++++++ .+.+++...++|+|||+|||+++.+.....+.++....++||||||+|||+|+.++||+
T Consensus 15 ~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~Qlla~alGG~ 93 (208)
T PRK05637 15 YNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGK 93 (208)
T ss_pred HHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHHHHHHHHcCCe
Confidence 47899999999999999975 56777776789999999999999887655555554446899999999999999999999
Q ss_pred eeecCCccccccceeeEEc-ccCCCccccCCC------------CcccccccccccccccCCCCCCeEEEEEcCC--C-c
Q 029484 81 IVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLS------------NPFTAGRYHSLVIEKESFPSDALEVTAWTED--G-L 144 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~------------~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~--~-~ 144 (192)
+.+.. ..+|.+..+..+ .+.++++|.+++ .++.++++|++.+.. ++++++++|++++ + .
T Consensus 94 V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~---lp~~~~vlA~s~~~~~~v 168 (208)
T PRK05637 94 VEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV---APDGMESLGTCSSEIGPV 168 (208)
T ss_pred eccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc---CCCCeEEEEEecCCCCCE
Confidence 98764 346666555443 233667888775 357899999999976 5689999999754 3 4
Q ss_pred eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++++++.+.+ +||+|||||...++.|..||+||++-+.
T Consensus 169 ~~a~~~~~~~-~~GvQfHPE~~~T~~G~~il~nfl~~~~ 206 (208)
T PRK05637 169 IMAAETTDGK-AIGLQFHPESVLSPTGPIILSRCVEQLL 206 (208)
T ss_pred EEEEEECCCC-EEEEEeCCccCcCCCHHHHHHHHHHHHh
Confidence 6788888876 9999999999999999999999998764
No 13
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=6.4e-37 Score=233.56 Aligned_cols=172 Identities=26% Similarity=0.444 Sum_probs=142.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
++.++++..|+++++++++ .+.+++...++|||||+||++++++.... ..++. ++.++|+||||+|||+|+.++||+
T Consensus 13 ~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~~-~~i~~~~~~~~PilGIC~G~Qll~~~lgg~ 90 (188)
T TIGR00888 13 LIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENAP-RADEKIFELGVPVLGICYGMQLMAKQLGGE 90 (188)
T ss_pred HHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCch-HHHHHHHhCCCCEEEECHHHHHHHHhcCce
Confidence 5789999999999999975 45677776677899999999998876432 22332 567899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+... .+. ++..+.... .+++|.++++.+.++++|++.+.. ++++++++|+++++.+++++.++++ ++|+|
T Consensus 91 v~~~~~-~~~-g~~~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~~~v~a~~~~~~~-~~g~Q 162 (188)
T TIGR00888 91 VGRAEK-REY-GKAELEILD--EDDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDNCPVAAMAHEEKP-IYGVQ 162 (188)
T ss_pred EecCCC-ccc-eeEEEEEec--CCHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCCCCeEEEEECCCC-EEEEe
Confidence 998763 333 455555543 457999998889999999999865 5688999999999999999999876 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
||||++.+++|.+||++|+..++
T Consensus 163 fHPE~~~~~~g~~i~~~f~~~~~ 185 (188)
T TIGR00888 163 FHPEVTHTEYGNELLENFVYDVC 185 (188)
T ss_pred eCCccCCChhhHHHHHHHHHHhh
Confidence 99999877789999999998654
No 14
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=3.2e-36 Score=233.59 Aligned_cols=175 Identities=45% Similarity=0.799 Sum_probs=141.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHh--ccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
++.+++++.|+++++++++.....+.. ..++|||||+|||+++.+.....+.+++ +++++||||||+|||+|+.++|
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~G 94 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFG 94 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhC
Confidence 578999999999999998642222222 2379999999999998766544455554 5678999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g 158 (192)
|++.+.+.. .+|....+... .+.+|.+++..+.++++|++.+..+.+ +++++++|+++++.++|+++++++ +||
T Consensus 95 G~v~~~~~~-~~g~~~~v~~~---~~~~~~~~~~~~~v~~~H~~~v~~~~l-p~~~~vla~s~~~~vqa~~~~~~~-i~g 168 (214)
T PRK07765 95 ATVDRAPEL-LHGKTSSVHHT---GVGVLAGLPDPFTATRYHSLTILPETL-PAELEVTARTDSGVIMAVRHRELP-IHG 168 (214)
T ss_pred CEEeeCCCC-ccCceeEEEEC---CCccccCCCCccEEEecchheEecccC-CCceEEEEEcCCCcEEEEEeCCCC-EEE
Confidence 999997643 35655555544 345888888889999999999964344 478999999999999999999877 999
Q ss_pred EeccCCCCCCCchHHHHHHHHHHH
Q 029484 159 VQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 159 ~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
+|||||+..+..|.+++++|+..+
T Consensus 169 vQfHPE~~~t~~g~~~l~~f~~~~ 192 (214)
T PRK07765 169 VQFHPESVLTEGGHRMLANWLTVC 192 (214)
T ss_pred EeeCCCcccCcchHHHHHHHHHHh
Confidence 999999987789999999999765
No 15
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-36 Score=216.37 Aligned_cols=184 Identities=86% Similarity=1.402 Sum_probs=172.7
Q ss_pred cHHHHH-HhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l-~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|+.++| -+.|+.+.|.++|+...+++..+++++++|++|||.|.|.+--.+.++++...+|+||||+|.|.|.+++||+
T Consensus 33 Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGvCMGlQCi~e~fGGk 112 (223)
T KOG0026|consen 33 NLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 112 (223)
T ss_pred HHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeeeehhhhhhhhhhCcE
Confidence 678888 7789999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+........||....+..+...+..+|+++++.+.+..+|+-+...+.||.+.++++|+++++.|++.+++.|.++-|+|
T Consensus 113 v~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQ 192 (223)
T KOG0026|consen 113 IVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQ 192 (223)
T ss_pred EeccCcceeeccccccccCCccccccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeecccccccccee
Confidence 99998778899999999887777889999999999999999999988898899999999999999999999998899999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
||||...++.|..++|||++...+.
T Consensus 193 fHPESIlteeGk~~irNflni~~~t 217 (223)
T KOG0026|consen 193 FHPESIITTEGKTIVRNFIKIVEKK 217 (223)
T ss_pred ecchhhhhhhhHHHHHHHHHhcccc
Confidence 9999999999999999999987643
No 16
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=2.5e-35 Score=223.45 Aligned_cols=167 Identities=31% Similarity=0.489 Sum_probs=135.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
++.++|+.+|+++++++++ .+.++....++||||++||++++++.. .+.+.+ ++.++|+||||+|||+|+.++||
T Consensus 13 ~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Qll~~~~gg 89 (181)
T cd01742 13 LIARRVRELGVYSEILPNT-TPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEI--FELGVPVLGICYGMQLIAKALGG 89 (181)
T ss_pred HHHHHHHhcCceEEEecCC-CChhhhcccCCCEEEECCCcccccccccchhhHHH--HhcCCCEEEEcHHHHHHHHhcCC
Confidence 5789999999999999975 344433344899999999999887653 222333 34589999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... . ..++..+... ..+++|.+++..+.++++|++.+.. ++++++++|+++++.++++++++++ ++|+
T Consensus 90 ~v~~~~~-~-~~G~~~v~~~--~~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~i~a~~~~~~~-~~g~ 161 (181)
T cd01742 90 KVERGDK-R-EYGKAEIEID--DSSPLFEGLPDEQTVWMSHGDEVVK---LPEGFKVIASSDNCPVAAIANEEKK-IYGV 161 (181)
T ss_pred eEEeCCC-C-cceEEEEEec--CCChhhcCCCCceEEEcchhhhhhh---cCCCcEEEEeCCCCCEEEEEeCCCc-EEEE
Confidence 9999763 2 3345555433 3577999998889999999999975 5678999999999999999998776 9999
Q ss_pred eccCCCCCCCchHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~ 179 (192)
|||||++.+++|.+||++|+
T Consensus 162 QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 162 QFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EcCCccccCcChHHHHHhhC
Confidence 99999997779999999984
No 17
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=4.1e-35 Score=222.90 Aligned_cols=168 Identities=29% Similarity=0.441 Sum_probs=134.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCC-CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~-dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
++.++++++|+++.+++++ .+.+++. ++ ||||++||+. ........+.++ +.++||||||+|||+|+.++||+
T Consensus 14 ~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~~-~~~~~~~~~~l~--~~~~PilGIC~G~Q~L~~a~Gg~ 87 (184)
T PRK00758 14 LIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGPD-IERAGNCPEYLK--ELDVPILGICLGHQLIAKAFGGE 87 (184)
T ss_pred HHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCCC-hhhccccHHHHH--hCCCCEEEEeHHHHHHHHhcCcE
Confidence 5789999999999999964 5666776 55 9999999983 322222222332 45799999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+| +..+..+. .+++|.+++..+.++++|++.+.. ++++++++|+++++.++|++.++++ ++|+|
T Consensus 88 v~~~~~-~~~g-~~~i~~~~--~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~v~a~~~~~~~-~~g~Q 159 (184)
T PRK00758 88 VGRGEY-GEYA-LVEVEILD--EDDILKGLPPEIRVWASHADEVKE---LPDGFEILARSDICEVEAMKHKEKP-IYGVQ 159 (184)
T ss_pred EecCCC-ceee-eEEEEEcC--CChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECCCCCEEEEEECCCC-EEEEE
Confidence 998763 3344 33444432 467898899899999999999965 5678999999999999999998876 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
||||++.++++.+||++|++.+.
T Consensus 160 fHPE~~~~~~g~~l~~~f~~~~~ 182 (184)
T PRK00758 160 FHPEVAHTEYGEEIFKNFLEICG 182 (184)
T ss_pred cCCccCCCchHHHHHHHHHHHHc
Confidence 99999877899999999997653
No 18
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=7.1e-35 Score=233.86 Aligned_cols=174 Identities=26% Similarity=0.505 Sum_probs=148.9
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
.|+.+.|.+.|+++.|+|++ .+.+++...++|||+||.|||+|......+..+++ ++..+|++|||+|||+|+.|+|+
T Consensus 191 ~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga 269 (368)
T COG0505 191 RNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGA 269 (368)
T ss_pred HHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCC
Confidence 37899999999999999985 88999988899999999999999776767777777 46667999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g 158 (192)
+..+++.++ +|.++++.--. . .....+.++|+|+|+.+.+.... +++..+ +|+.+++++++++| +++
T Consensus 270 ~T~KmkFGH-rG~NhPV~dl~-------t--grv~ITSQNHGyaVd~~s~~~~~-~vth~nlnDgTvEGi~h~~~P-~fS 337 (368)
T COG0505 270 KTYKMKFGH-RGANHPVKDLD-------T--GRVYITSQNHGYAVDEDSLVETL-KVTHVNLNDGTVEGIRHKDLP-AFS 337 (368)
T ss_pred ceeecccCC-CCCCcCccccc-------C--CeEEEEecCCceecChhhcCCCc-eeEEEeCCCCCccceecCCCc-eEE
Confidence 999999775 88877764321 1 24567889999999987665443 788888 89999999999998 999
Q ss_pred EeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 159 VQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
+|||||.+++| |...||..|++++...+.
T Consensus 338 VQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 338 VQYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred EccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence 99999999999 899999999999986653
No 19
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.4e-35 Score=223.15 Aligned_cols=171 Identities=32% Similarity=0.420 Sum_probs=141.2
Q ss_pred HHHHHHhCC-CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHH----HHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQ----TVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~----~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+.+++++.| ...+++++ ..+.+++...++||+||+|||.++++...|.. .|++ ...++||||||+|||+|+.+
T Consensus 17 i~r~~re~g~v~~e~~~~-~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 17 IARRLRELGYVYSEIVPY-TGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred HHHHHHHcCCceEEEEeC-CCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 678999999 77777776 46777777778899999999999998875543 3333 34667899999999999999
Q ss_pred hCCeeeecCCccccccceeeEEcccCCCccccCCCCcc-cccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 77 FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 77 ~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
+||+|.+... .+. ++.++.... ..+.+|++++... .+++||+|.+.. ++++++++|+|+.+++++++.. .+
T Consensus 96 lGg~V~~~~~-~E~-G~~~v~~~~-~~~~l~~gl~~~~~~v~~sH~D~v~~---lP~g~~vlA~s~~cp~qa~~~~-~~- 167 (198)
T COG0518 96 LGGKVERGPK-REI-GWTPVELTE-GDDPLFAGLPDLFTTVFMSHGDTVVE---LPEGAVVLASSETCPNQAFRYG-KR- 167 (198)
T ss_pred hCCEEeccCC-Ccc-ceEEEEEec-CccccccCCccccCccccchhCcccc---CCCCCEEEecCCCChhhheecC-Cc-
Confidence 9999999874 434 456666654 4557999998888 599999999987 6789999999999999999988 44
Q ss_pred eEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 156 LQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 156 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+||+|||||.+. +.+..+++||...+.
T Consensus 168 ~~gvQFHpEv~~-~~~~~~l~nf~~~i~ 194 (198)
T COG0518 168 AYGVQFHPEVTH-EYGEALLENFAHEIC 194 (198)
T ss_pred EEEEeeeeEEeH-HHHHHHHHHhhhhhc
Confidence 999999999984 789999999997443
No 20
>PLN02347 GMP synthetase
Probab=100.00 E-value=1.7e-34 Score=248.76 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=146.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHH--hCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~--~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+. +...+.+ .+.++||||||+|||+|+.++
T Consensus 25 ~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~al 103 (536)
T PLN02347 25 LITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKL 103 (536)
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHc
Confidence 6889999999999999975 6788887678999999999999976542 2233332 246899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCc--ccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP--FTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
||+|.+.. ..++| +..+... .++++|++++.. +.++++|++.+.. ++++++++|+++++.++++++.+.|
T Consensus 104 GG~V~~~~-~~e~G-~~~v~i~--~~~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~vlA~s~~~~iaai~~~~~~- 175 (536)
T PLN02347 104 GGEVKPGE-KQEYG-RMEIRVV--CGSQLFGDLPSGETQTVWMSHGDEAVK---LPEGFEVVAKSVQGAVVAIENRERR- 175 (536)
T ss_pred CCEEEecC-Ccccc-eEEEEEc--CCChhhhcCCCCceEEEEEEEEEEeee---CCCCCEEEEEeCCCcEEEEEECCCC-
Confidence 99999876 34454 4445443 356799999876 7899999999865 5689999999999999999998876
Q ss_pred eEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 156 LQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 156 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
+||+|||||++.++.|.+|++||+..+++++.
T Consensus 176 i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~ 207 (536)
T PLN02347 176 IYGLQYHPEVTHSPKGMETLRHFLFDVCGVTA 207 (536)
T ss_pred EEEEEccCCCCccchHHHHHHHHHHHHhCcCC
Confidence 99999999999889999999999987776543
No 21
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=3.3e-35 Score=224.61 Aligned_cols=176 Identities=35% Similarity=0.582 Sum_probs=140.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHH--hccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
+|.+++++.|.++++++++. +..+. ...++||+||+||++++++.....+.++. .+.++|+||||+|||+|+.++|
T Consensus 12 ~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G 90 (192)
T PF00117_consen 12 SLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHALG 90 (192)
T ss_dssp HHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHHTT
T ss_pred HHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHhcC
Confidence 68999999999999999863 33333 24589999999999999984444444544 4579999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCC-ceEEEeeCCCCceE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQ 157 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~ 157 (192)
+++.+.......+....+.... .++++.++++.+.++++|++.|....+.+++++++|+++++ .++++.+.++| ++
T Consensus 91 ~~v~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~ 167 (192)
T PF00117_consen 91 GKVVPSPEKPHHGGNIPISETP--EDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNP-IY 167 (192)
T ss_dssp HEEEEEESEEEEEEEEEEEEEE--EHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTS-EE
T ss_pred Cccccccccccccccccccccc--ccccccccccccccccccceeeecccccccccccccccccccccccccccccE-EE
Confidence 9999876333344444443322 25789999999999999999997422235789999999765 89999999987 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
|+|||||++.++.+..+++||+-.
T Consensus 168 g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 168 GVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EESSBTTSTTSTTHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCcchhhhheeEe
Confidence 999999999888999999999754
No 22
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.2e-34 Score=249.43 Aligned_cols=177 Identities=50% Similarity=0.876 Sum_probs=150.5
Q ss_pred CcHHHHHHhCCCe-EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+||++.|++.|.+ +.+++.++.+.+++...++||||++|||+++.+.+...+.++.+..++||||||+|||+|+.++||
T Consensus 13 ~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIClG~QlLa~a~Gg 92 (534)
T PRK14607 13 YNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGG 92 (534)
T ss_pred HHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEcHHHHHHHHHcCC
Confidence 4899999999996 777766667788887678999999999999988776666666677889999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... ..+|.+..+... .+++|.+++..+.++++|++.+....+ +++++++|+++++.+++++++++| +||+
T Consensus 93 ~V~~~~~-~~~G~~~~v~~~---~~~lf~~~~~~~~v~~~Hs~~v~~~~l-p~~~~vlA~s~d~~i~a~~~~~~p-i~Gv 166 (534)
T PRK14607 93 KIVHAKR-ILHGKTSPIDHN---GKGLFRGIPNPTVATRYHSLVVEEASL-PECLEVTAKSDDGEIMGIRHKEHP-IFGV 166 (534)
T ss_pred eEecCCc-cccCCceeEEEC---CCcchhcCCCCcEEeeccchheecccC-CCCeEEEEEcCCCCEEEEEECCCC-EEEE
Confidence 9999874 346766665543 456899988889999999999864444 478999999999999999999987 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
|||||+..++++.+||++|++.+.
T Consensus 167 QFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 167 QFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred EeCCCCCCChhHHHHHHHHHHHhh
Confidence 999999877899999999998764
No 23
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=3.3e-34 Score=236.02 Aligned_cols=170 Identities=29% Similarity=0.520 Sum_probs=138.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
|++++|+++|+.+++++++ .+.+++....+|||||+|||+++.+....++.++++-.++||||||+|||+|+.++||++
T Consensus 186 ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~Gg~v 264 (358)
T TIGR01368 186 NILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKT 264 (358)
T ss_pred HHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCce
Confidence 7899999999999999975 567777766789999999999987655555556553338999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEEe
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~Q 160 (192)
.+++++ .+|..+++.... . ...+.+.++|+++|..+.++.+++++++++ +|+.|++++++++| ++|+|
T Consensus 265 ~kl~~g-h~G~nhpV~~~~--~-------~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~p-i~gVQ 333 (358)
T TIGR01368 265 YKMKFG-HRGGNHPVKDLI--T-------GRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLP-VFSVQ 333 (358)
T ss_pred eccCcC-cCCCceeeEECC--C-------CcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCC-EEEEE
Confidence 998754 366665554321 0 123456678999998766665789999997 78999999999998 99999
Q ss_pred ccCCCCCCC-chHHHHHHHHHHHH
Q 029484 161 FHPESIITT-EGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~~-~~~~l~~~f~~~~~ 183 (192)
||||+..++ +...||++|++++.
T Consensus 334 fHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 334 YHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred ECCCCCCCCCChHHHHHHHHHHhh
Confidence 999999888 67889999998874
No 24
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.9e-34 Score=245.63 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=143.6
Q ss_pred CcHHHHHHhCCCeEEEEeCCCC---CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 1 MTFLKYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~---~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+||++.+++.|.++.|++.+.. ..+++...++|+|||+|||+++.+.+.....+..+..++||||||+|||+|+.++
T Consensus 15 ~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~ 94 (531)
T PRK09522 15 YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAY 94 (531)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhc
Confidence 4799999999999999986421 2556665678999999999999887655444545667899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~ 157 (192)
||+|.+.. ...+|....+.. ..+++|.+++..+.++.+|++.+.. ++++++++|+ +++.++++++.+.+ +|
T Consensus 95 GG~V~~~~-~~~~G~~~~i~~---~~~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~vlA~-sd~~v~ai~~~~~~-i~ 165 (531)
T PRK09522 95 GGYVGQAG-EILHGKASSIEH---DGQAMFAGLTNPLPVARYHSLVGSN---IPAGLTINAH-FNGMVMAVRHDADR-VC 165 (531)
T ss_pred CCEEEeCC-ceeeeeEEEEee---cCCccccCCCCCcEEEEehheeccc---CCCCcEEEEe-cCCCEEEEEECCCC-EE
Confidence 99999875 233554443332 2456899999899999999999865 5689999997 58889999998876 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
|+|||||+..++.|..|++||++.+..
T Consensus 166 GVQFHPEs~~T~~G~~il~NFl~~~~~ 192 (531)
T PRK09522 166 GFQFHPESILTTQGARLLEQTLAWAQQ 192 (531)
T ss_pred EEEecCccccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999988753
No 25
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1.5e-33 Score=231.91 Aligned_cols=171 Identities=29% Similarity=0.540 Sum_probs=139.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
|++++|+++|+.+.+++++ .+.+++...++|||||+|||+++.+...+++.++++...+|+||||+|||+|+.++||++
T Consensus 180 ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~Gg~v 258 (354)
T PRK12838 180 SILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADT 258 (354)
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCEE
Confidence 7899999999999999975 556777666899999999999987776666666664334999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEEe
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~Q 160 (192)
.+++.+ .+|..+++..... + ..+.+.++|+++|..+.++..++.+++.+ +|+.|+|++++++| ++|+|
T Consensus 259 ~kl~~g-h~G~~hpV~~~~~--~-------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~p-i~gVQ 327 (354)
T PRK12838 259 EKLPFG-HRGANHPVIDLTT--G-------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKP-VLSVQ 327 (354)
T ss_pred ecCCCC-ccCCceEEEECCC--C-------eEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCC-EEEEE
Confidence 998755 3677766654321 1 22456688999997666654568999975 79999999999988 99999
Q ss_pred ccCCCCCCC-chHHHHHHHHHHHHH
Q 029484 161 FHPESIITT-EGKTIVRNFIKMIVR 184 (192)
Q Consensus 161 fHPE~~~~~-~~~~l~~~f~~~~~~ 184 (192)
||||+..++ ++..||++|++++.+
T Consensus 328 fHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 328 FHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHh
Confidence 999998887 788999999998863
No 26
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=100.00 E-value=1.2e-33 Score=213.71 Aligned_cols=166 Identities=28% Similarity=0.521 Sum_probs=129.6
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+|++++++++|+.+++++++ .+.+++...++||||++||++++.+.....+.+++ +++++|+||||+|+|+|+.++||
T Consensus 10 ~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg 88 (178)
T cd01744 10 HNILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGA 88 (178)
T ss_pred HHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCC
Confidence 37899999999999999986 45556555589999999999987665555555554 56789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g 158 (192)
++.+.+.+ .++...++.... . ...+.++.+|++.+..+.++ ++++++|++ +++.++++++++.| +||
T Consensus 89 ~v~~~~~~-~~g~~~~v~~~~--~-------~~~~~v~~~H~~~v~~~~lp-~~~~v~a~s~~~~~i~a~~~~~~~-i~G 156 (178)
T cd01744 89 KTYKMKFG-HRGSNHPVKDLI--T-------GRVYITSQNHGYAVDPDSLP-GGLEVTHVNLNDGTVEGIRHKDLP-VFS 156 (178)
T ss_pred ceecCCCC-CCCCceeeEEcC--C-------CCcEEEEcCceEEEcccccC-CceEEEEEECCCCcEEEEEECCCC-eEE
Confidence 99986532 244444433221 0 13355778999999754554 689999997 68899999999887 999
Q ss_pred EeccCCCCCCC-chHHHHHHHH
Q 029484 159 VQFHPESIITT-EGKTIVRNFI 179 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~ 179 (192)
+|||||+..++ +..+||.+|+
T Consensus 157 vQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 157 VQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EeeCCCCCCCCCCchHhHhhhC
Confidence 99999998775 6778999985
No 27
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=7.4e-34 Score=244.90 Aligned_cols=174 Identities=29% Similarity=0.474 Sum_probs=144.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+.+++++++ .+.+++...++|||||+||+.++++... ..+.+ ++.++||||||+|||+|+.++||
T Consensus 18 li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~~~~PvLGIC~G~QlLa~~lGG 94 (511)
T PRK00074 18 LIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FELGVPVLGICYGMQLMAHQLGG 94 (511)
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHH--HhCCCCEEEECHHHHHHHHHhCC
Confidence 5789999999999999974 5677887667899999999999877543 22322 45689999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+.. ..+.| +..+.... ++++|++++..+.++++|++.|.. ++++++++|+++++.++++++.+.+ +||+
T Consensus 95 ~V~~~~-~~e~G-~~~i~i~~--~~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~v~ai~~~~~~-i~Gv 166 (511)
T PRK00074 95 KVERAG-KREYG-RAELEVDN--DSPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIASTENCPIAAIANEERK-FYGV 166 (511)
T ss_pred eEEecC-Ccccc-eEEEEEcC--CChhhhcCCCceEEEEECCeEEEe---cCCCcEEEEEeCCCCEEEEEeCCCC-EEEE
Confidence 999986 33454 44455442 567999998889999999999976 5689999999999999999988776 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHHh
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~~~~ 186 (192)
|||||++.+++|.+||+||+..+++++
T Consensus 167 QFHPE~~~t~~G~~il~nFl~~i~~~~ 193 (511)
T PRK00074 167 QFHPEVTHTPQGKKLLENFVFDICGCK 193 (511)
T ss_pred eCCCCcCCchhHHHHHHHHHHHhcCCC
Confidence 999999988899999999997766543
No 28
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=1.4e-33 Score=232.57 Aligned_cols=168 Identities=29% Similarity=0.527 Sum_probs=136.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|++++|+++|+.+.+++++ .+.+++...++|||||+|||+++.+.....+.++. ++.++|+||||+|||+|+.++||+
T Consensus 190 nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~ 268 (360)
T PRK12564 190 NILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAK 268 (360)
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCc
Confidence 7899999999999999975 56777776689999999999988665444445554 456899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+.+.+ .+|...++.... .+..+.+.++|+++|+.++++ +++++++++ +|+.+++++++++| ++|+
T Consensus 269 v~kl~~g-h~G~~~pv~~~~---------~~~~~its~~H~~~V~~~~lp-~~l~v~a~~~~Dg~iegi~~~~~p-i~gV 336 (360)
T PRK12564 269 TYKMKFG-HRGANHPVKDLE---------TGKVEITSQNHGFAVDEDSLP-ANLEVTHVNLNDGTVEGLRHKDLP-AFSV 336 (360)
T ss_pred EeccCCC-ccCCceeeEECC---------CCcEEEEecCcccEEcccccC-CceEEEEEeCCCCcEEEEEECCCC-EEEE
Confidence 9998754 356555554321 013356778999999765664 679999998 68999999999988 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHH
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMI 182 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~ 182 (192)
|||||+..++ ++..||++|++++
T Consensus 337 QfHPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 337 QYHPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHhC
Confidence 9999999887 6889999999863
No 29
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=4e-33 Score=230.77 Aligned_cols=172 Identities=24% Similarity=0.462 Sum_probs=137.5
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+||+++|+++|+++.+++++ .+.+++...++|||||+|||+++.+...+.+.+++ ++.++||||||+|||+|+.++||
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg 282 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEA 282 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCC
Confidence 37899999999999999975 66778877789999999999999776666666655 35689999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcc-cccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~ 157 (192)
++.+++.+. .+...++. +...+ ...++|++.+..+.++..++.+++.+ +|+.+++++++++| ++
T Consensus 283 ~v~k~~~Gh-~g~n~pv~------------~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~p-i~ 348 (382)
T CHL00197 283 KTFKLKFGH-RGLNHPSG------------LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKP-YF 348 (382)
T ss_pred EEeccCCCC-CCCCEecC------------CCCceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECCCC-cE
Confidence 999987553 34333221 11222 33478999997766654578888875 78999999999997 99
Q ss_pred EEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 158 GVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 158 g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
|+|||||+..++ +...+|++|++++.+.+.
T Consensus 349 gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~~~ 379 (382)
T CHL00197 349 SVQYHPEASPGPHDADYLFEYFIEIIKHSKS 379 (382)
T ss_pred EEeeCCCCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 999999999888 566799999999876543
No 30
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=100.00 E-value=8e-33 Score=244.82 Aligned_cols=177 Identities=39% Similarity=0.670 Sum_probs=144.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+|.++|++.|+++.+++++ ...+.+...++|+|||+||||++.+... .+.+++ ++.++||||||+|||+|+.++||+
T Consensus 531 ~l~~~L~~~G~~v~vv~~~-~~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~ 608 (717)
T TIGR01815 531 TLANYLRQTGASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLPVFGVCLGLQGMVEAFGGA 608 (717)
T ss_pred HHHHHHHHCCCeEEEEECC-CChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCCEEEECHHHHHHhhhhCCE
Confidence 7899999999999999875 3333333348999999999999987543 333433 568899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+|.+..+.... .+++|++++..+.++++|++.+..+.++ ++++++|+++++.++|+++++.| +||+|
T Consensus 609 V~~~~~-p~~G~~~~V~~~~--~~~Lf~~lp~~~~v~~~HS~~~~~~~LP-~~~~vlA~s~d~~v~Ai~~~~~~-i~GVQ 683 (717)
T TIGR01815 609 LDVLPE-PVHGKASRIRVLG--PDALFAGLPERLTVGRYHSLFARRDRLP-AELTVTAESADGLIMAIEHRRLP-LAAVQ 683 (717)
T ss_pred EEECCC-CeeCcceEEEECC--CChhhhcCCCCCEEEEECCCCcccccCC-CCeEEEEEeCCCcEEEEEECCCC-EEEEE
Confidence 999874 3577776665543 4679999999999999999987544444 78999999999999999999877 99999
Q ss_pred ccCCCCCC---CchHHHHHHHHHHHHHH
Q 029484 161 FHPESIIT---TEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 161 fHPE~~~~---~~~~~l~~~f~~~~~~~ 185 (192)
||||+..+ ..|.+||+||+..+...
T Consensus 684 FHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 684 FHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred eCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 99999644 45899999999988643
No 31
>PRK13566 anthranilate synthase; Provisional
Probab=100.00 E-value=8.1e-33 Score=245.09 Aligned_cols=175 Identities=44% Similarity=0.727 Sum_probs=145.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+|++++++.|+++++++++ .+.+.+...++|||||+|||+++.+.. ....++. +++++||||||+|||+|+.++||+
T Consensus 541 ~l~~~Lr~~G~~v~vv~~~-~~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~iPILGIClG~QlLa~alGG~ 618 (720)
T PRK13566 541 TLANYFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARNLPIFGVCLGLQAIVEAFGGE 618 (720)
T ss_pred HHHHHHHHCCCEEEEEECC-CChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCCCcEEEEehhHHHHHHHcCCE
Confidence 6899999999999999985 445555556899999999999987654 2333443 567899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.... .+|.+..+.... .+.+|++++..+.++++|++.+..+.++ ++++++|.++++.|++++++++| +||+|
T Consensus 619 V~~~~~~-~~G~~~~V~v~~--~~~Lf~~lp~~~~v~~~Hs~~v~~~~Lp-~~~~vlA~s~dg~V~ai~~~~~p-i~GVQ 693 (720)
T PRK13566 619 LGQLAYP-MHGKPSRIRVRG--PGRLFSGLPEEFTVGRYHSLFADPETLP-DELLVTAETEDGVIMAIEHKTLP-VAAVQ 693 (720)
T ss_pred EEECCCC-ccCCceEEEECC--CCchhhcCCCCCEEEEecceeEeeccCC-CceEEEEEeCCCcEEEEEECCCC-EEEEe
Confidence 9998743 477777776653 4579999999999999999887644554 78999999999999999999877 99999
Q ss_pred ccCCCCCC---CchHHHHHHHHHHHH
Q 029484 161 FHPESIIT---TEGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~---~~~~~l~~~f~~~~~ 183 (192)
||||+..+ +.|.+||+||+..+.
T Consensus 694 FHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 694 FHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred ccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 99999754 469999999998764
No 32
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=8.9e-33 Score=229.36 Aligned_cols=162 Identities=28% Similarity=0.511 Sum_probs=133.2
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||++.|+++|+++++++++ .+.+++...++|||||+|||+++.+.....+.++++..++||||||+|||+|+.++||+
T Consensus 252 ~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGICLGhQlLa~AlGGk 330 (415)
T PLN02771 252 HNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGK 330 (415)
T ss_pred HHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEcHHHHHHHHhcCCe
Confidence 47899999999999999985 67788877799999999999999877666666666546899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+++.+ .+|...++..... .....+.++|+++|+.+.++ .++++++.+ +|+.+++++++++| ++|+
T Consensus 331 v~K~~~G-h~G~n~pV~~~~~---------~~v~itsqnHg~aVd~~sLp-~~~~vt~~nlnDgtvegi~~~~~p-i~gV 398 (415)
T PLN02771 331 TFKMKFG-HHGGNHPVRNNRT---------GRVEISAQNHNYAVDPASLP-EGVEVTHVNLNDGSCAGLAFPALN-VMSL 398 (415)
T ss_pred EEECCCC-cccceEEEEECCC---------CCEEEEecCHHHhhccccCC-CceEEEEEeCCCCcEEEEEECCCC-EEEE
Confidence 9999865 4777766553211 12235678999999766664 689999987 79999999999987 9999
Q ss_pred eccCCCCCCC-chHHHH
Q 029484 160 QFHPESIITT-EGKTIV 175 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~ 175 (192)
|||||..++| |...+|
T Consensus 399 QFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 399 QYHPEASPGPHDSDNAF 415 (415)
T ss_pred EcCCCCCCCCCcChhhC
Confidence 9999999998 555543
No 33
>PRK09065 glutamine amidotransferase; Provisional
Probab=100.00 E-value=3.4e-32 Score=214.19 Aligned_cols=165 Identities=25% Similarity=0.309 Sum_probs=128.4
Q ss_pred HHHHHhCCCeEEEEeCCCCC-HHHHhccCCCeEEECCCCCCCCCcchhHHH----HHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGISLQT----VLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~-~~~~~~~~~dglii~GG~~~~~~~~~~~~~----~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.++..|.++.+++..... ..++. ++|||||+||+.+.++..+|+.. +++ ++.++||||||+|||+|+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~~~--~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~al 105 (237)
T PRK09065 28 RVALGLAEQPVVVVRVFAGEPLPAPD--DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHAL 105 (237)
T ss_pred HHHhccCCceEEEEeccCCCCCCChh--hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHc
Confidence 34455678999988775322 22333 89999999999999887776533 333 567899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCce
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHL 156 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~ 156 (192)
||+|.+.+.+.+.| +..+..+ .+..+++|+++++.+.++++|++.+.. ++++++++|+++++.+++++.++ ++
T Consensus 106 Gg~V~~~~~g~e~G-~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v~~---lp~~~~~la~s~~~~iqa~~~~~--~i 179 (237)
T PRK09065 106 GGEVGYNPAGRESG-TVTVELHPAAADDPLFAGLPAQFPAHLTHLQSVLR---LPPGAVVLARSAQDPHQAFRYGP--HA 179 (237)
T ss_pred CCccccCCCCCccc-eEEEEEccccccChhhhcCCccCcEeeehhhhhhh---CCCCCEEEEcCCCCCeeEEEeCC--CE
Confidence 99999886554444 4555544 344677999999999999999999875 56899999999999999999875 49
Q ss_pred EEEeccCCCCCCCchHHHHHHHHHH
Q 029484 157 QGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 157 ~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
+|+|||||++ ..+++.|++.
T Consensus 180 ~gvQfHPE~~-----~~~~~~~~~~ 199 (237)
T PRK09065 180 WGVQFHPEFT-----AHIMRAYLRA 199 (237)
T ss_pred EEEEeCCcCC-----HHHHHHHHHh
Confidence 9999999996 5566666653
No 34
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=1.5e-31 Score=212.30 Aligned_cols=180 Identities=25% Similarity=0.307 Sum_probs=128.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCC--------Ccc---hh-----HHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ--------DSG---IS-----LQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~--------~~~---~~-----~~~~~~-~~~~~Pi 63 (192)
++++++.+|.....++....+.+.+.. ..+||||++||+.+.. +.. .. ++.++. +++++||
T Consensus 31 y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PI 110 (254)
T PRK11366 31 YLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPI 110 (254)
T ss_pred HHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCE
Confidence 567888899888888753222222211 2699999999986652 111 11 123333 6789999
Q ss_pred EeeeHhHHHHHHHhCCeeeecCC----ccccc------------cceeeEEcccCCCccccCC-C--Ccccccccccccc
Q 029484 64 FGVCMGLQCIGEAFGGKIVRSPL----GVMHG------------KSSLVYYDEKGEDGLLAGL-S--NPFTAGRYHSLVI 124 (192)
Q Consensus 64 lGIC~G~Q~l~~~~gg~v~~~~~----~~~~~------------~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~H~~~v 124 (192)
||||+|+|+|+.++||++.+... ...++ ....+... +++++..+ + ..+.++.+|+++|
T Consensus 111 LGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~---~~s~l~~i~~~~~~~~Vns~H~q~V 187 (254)
T PRK11366 111 FAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVE---EGGLLSALLPECSNFWVNSLHGQGA 187 (254)
T ss_pred EEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEEC---CCCcHHHhcCCCceEEeehHHHHHH
Confidence 99999999999999999998621 10111 12333333 33344333 2 4678999999999
Q ss_pred cccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCch--HHHHHHHHHHHHHHhhh
Q 029484 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG--KTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 125 ~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~--~~l~~~f~~~~~~~~~~ 188 (192)
.. ++++++++|+++|+.|+|++++++++++|+|||||+...+++ .+||++|++.+......
T Consensus 188 ~~---l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~~ 250 (254)
T PRK11366 188 KV---VSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIAE 250 (254)
T ss_pred hh---cccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 86 678999999999999999999988867999999999876655 78999999988765443
No 35
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=100.00 E-value=1.2e-31 Score=240.14 Aligned_cols=179 Identities=36% Similarity=0.585 Sum_probs=149.5
Q ss_pred CcHHHHHHhC-CCeEEEEeCCCCCHHHHhc-----cCCCeEEECCCCCCCCCcch---hHHHHHHhCCCCCEEeeeHhHH
Q 029484 1 MTFLKYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 1 ~~l~~~l~~~-g~~~~v~~~~~~~~~~~~~-----~~~dglii~GG~~~~~~~~~---~~~~~~~~~~~~PilGIC~G~Q 71 (192)
+||++.|++. |..+.|+++++.+.+++.. ..+|+|||+||||+|..... ..+.+.+. .++||||||+|||
T Consensus 95 yNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-~~iPILGICLGhQ 173 (918)
T PLN02889 95 YNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQ 173 (918)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-CCCcEEEEcHHHH
Confidence 4899999998 9999999988777777643 37999999999999964433 34555544 4699999999999
Q ss_pred HHHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCC----cccccccccccccccCCCCCCeEEEEEcCC-----
Q 029484 72 CIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN----PFTAGRYHSLVIEKESFPSDALEVTAWTED----- 142 (192)
Q Consensus 72 ~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~----- 142 (192)
+|+.++||+|.+.+. ..||....+... .+.+|.++|. .|.+..+|+..|+.+.++ +.++++|++++
T Consensus 174 ~i~~~~Gg~V~~~~~-~~HG~~s~I~h~---~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP-~~L~~~A~t~~~~~~~ 248 (918)
T PLN02889 174 ALGYVHGARIVHAPE-PVHGRLSEIEHN---GCRLFDDIPSGRNSGFKVVRYHSLVIDAESLP-KELVPIAWTSSSDTLS 248 (918)
T ss_pred HHHHhcCceEEeCCC-ceeeeeeeEeec---CchhhcCCCcCCCCCceEEeCCCcccccCCCC-CceEEEEEECCCcccc
Confidence 999999999999884 568887777654 4569999986 599999999999755554 78999997754
Q ss_pred ------------------------------------------------CceEEEeeCCCCceEEEeccCCCCCCCchHHH
Q 029484 143 ------------------------------------------------GLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174 (192)
Q Consensus 143 ------------------------------------------------~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l 174 (192)
+.++|++|+.+| +||+|||||...++.|.+|
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P-~~GVQfHPESi~t~~G~~l 327 (918)
T PLN02889 249 FLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRP-HYGLQFHPESIATCYGRQI 327 (918)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCc-eEEEEeCCccccCchhHHH
Confidence 579999999998 9999999999988999999
Q ss_pred HHHHHHHHHHHh
Q 029484 175 VRNFIKMIVRKE 186 (192)
Q Consensus 175 ~~~f~~~~~~~~ 186 (192)
|+||++.+.+..
T Consensus 328 ~~nF~~~~~~~~ 339 (918)
T PLN02889 328 FKNFREITQDYW 339 (918)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 36
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.98 E-value=1.9e-31 Score=210.39 Aligned_cols=158 Identities=23% Similarity=0.322 Sum_probs=121.3
Q ss_pred cHHHHHHhCCCe---EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHH----HHH-----hCCCCCEEe
Q 029484 2 TFLKYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQT----VLE-----LGPTVPLFG 65 (192)
Q Consensus 2 ~l~~~l~~~g~~---~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~----~~~-----~~~~~PilG 65 (192)
++.++++..|.. +.+++.+..........+||||||+||++++++. .+|+.. +++ ++.++||||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLG 98 (242)
T PRK07567 19 EYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLG 98 (242)
T ss_pred hHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 457788888876 6666654332111122379999999999999876 455432 211 378999999
Q ss_pred eeHhHHHHHHHhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCc
Q 029484 66 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144 (192)
Q Consensus 66 IC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~ 144 (192)
||+|||+|+.++||+|.+ ..+.+.| +..+..+ .+..+++|.+++..+.++++|++.|.. ++++++++|+++++.
T Consensus 99 IC~G~Qlla~a~GG~V~~-~~g~e~G-~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~---lp~~~~vlA~s~~~~ 173 (242)
T PRK07567 99 ACYGVGTLGHHQGGVVDR-TYGEPVG-AVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSA---LPPGAVLLATSPTCP 173 (242)
T ss_pred EchhHHHHHHHcCCEEec-CCCCcCc-cEEEEECCccCCChhhcCCCCceEEEeehhhhhhh---CCCCCEEEEeCCCCC
Confidence 999999999999999998 3344444 5555544 344678999999999999999999975 568999999999999
Q ss_pred eEEEeeCCCCceEEEeccCCCC
Q 029484 145 IMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
+|+++..+ ++||+|||||++
T Consensus 174 vqa~~~~~--~~~gvQfHPE~~ 193 (242)
T PRK07567 174 VQMFRVGE--NVYATQFHPELD 193 (242)
T ss_pred EEEEEeCC--CEEEEEeCCcCC
Confidence 99999865 499999999996
No 37
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.97 E-value=1e-30 Score=205.84 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=124.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhHHH----HHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISLQT----VLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~----~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++|++.|.++.++++.... .+++. ++||+||+||++++++..+|+.. +++ ++.++|+||||+|+|+|+
T Consensus 23 ~l~~~l~~~g~~~~v~~~~~~~~~p~~l~--~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla 100 (239)
T PRK06490 23 RVGQLLQERGYPLDIRRPRLGDPLPDTLE--DHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLA 100 (239)
T ss_pred HHHHHHHHCCCceEEEeccCCCCCCCccc--ccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHH
Confidence 5789999999999999764221 12233 79999999999999988877543 332 568899999999999999
Q ss_pred HHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCC
Q 029484 75 EAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 154 (192)
Q Consensus 75 ~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~ 154 (192)
+++||+|.+.+.+....++..+..+. ..+++.+++ ..++++|++.+. ++++++++|+++++.+++++..+
T Consensus 101 ~alGG~V~~~~~G~~e~G~~~i~~~~--~~~~~~~~~--~~~~~~H~d~~~----lP~~~~~LA~s~~~~~qa~~~~~-- 170 (239)
T PRK06490 101 RHLGARVAPHPDGRVEIGYYPLRPTE--AGRALMHWP--EMVYHWHREGFD----LPAGAELLATGDDFPNQAFRYGD-- 170 (239)
T ss_pred HHcCCEeecCCCCCCccceEEeEECC--CcccccCCC--CEEEEECCcccc----CCCCCEEEEeCCCCCeEEEEeCC--
Confidence 99999999987554344455665543 223444444 357889999843 45789999999999999999875
Q ss_pred ceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 155 HLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 155 ~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
++||+|||||++ ..++++|+..
T Consensus 171 ~v~g~QfHPE~~-----~~~~~~~i~~ 192 (239)
T PRK06490 171 NAWGLQFHPEVT-----RAMMHRWVVR 192 (239)
T ss_pred CEEEEeeCccCC-----HHHHHHHHHh
Confidence 499999999996 5666766653
No 38
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.97 E-value=6e-31 Score=200.59 Aligned_cols=164 Identities=27% Similarity=0.380 Sum_probs=129.1
Q ss_pred cHHHHHHhCC---CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC-CCcchhHH----HHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQ----TVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g---~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~-~~~~~~~~----~~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++++++| ++++++++..... .....++||||++||+.+. .+...|.+ .++. +++++|+||||+|+|+
T Consensus 15 ~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~ 93 (188)
T cd01741 15 LFEDLLREAGAETIEIDVVDVYAGEL-LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQL 93 (188)
T ss_pred hHHHHHHhcCCCCceEEEEecCCCCC-CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHH
Confidence 5788999999 7999988754332 1122389999999999988 44444433 3333 5678999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
|+.++||++.+...+. ..++..+..+. +..++++++++..+.++++|++.|.. ++++++++|+++++.+++++.+
T Consensus 94 l~~~lGG~v~~~~~~~-~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~~la~~~~~~v~~~~~~ 169 (188)
T cd01741 94 LARALGGKVGRNPKGW-EIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVE---LPPGAVLLASSEACPNQAFRYG 169 (188)
T ss_pred HHHHhCCEEecCCCcc-eeEEEEEEeccccccCchhhcCCCcceEEEEeccChhh---CCCCCEEeecCCCCCcceEEec
Confidence 9999999999987543 44455565543 33567888888899999999999986 5688999999999999999987
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
+ +++|+||||| ..++++|+
T Consensus 170 ~--~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 170 D--RALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred C--CEEEEccCch-------HHHHhhhC
Confidence 3 5999999999 68888874
No 39
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.97 E-value=1.4e-30 Score=204.43 Aligned_cols=165 Identities=20% Similarity=0.276 Sum_probs=125.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHH----HHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQ----TVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~----~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++|++.|.++.+++.+..+.......++|+|||+|||.++++.. +|+. .+++ ++.++|+||||+|+|+|+
T Consensus 18 ~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla 97 (234)
T PRK07053 18 SFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIA 97 (234)
T ss_pred HHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHH
Confidence 57899999999999998753322111223799999999999987753 4433 3333 567899999999999999
Q ss_pred HHhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 75 EAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 75 ~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.++||+|.+.. ..+.| +.++..+ .+..+++ .+++..+.+++||++.+. ++++++++|+|+.+.+|+++..+
T Consensus 98 ~alGg~V~~~~-~~e~G-~~~i~~t~~g~~~pl-~~~~~~~~~~~~H~d~~~----lP~ga~~La~s~~~~~qaf~~g~- 169 (234)
T PRK07053 98 RALGARVYPGG-QKEIG-WAPLTLTDAGRASPL-RHLGAGTPVLHWHGDTFD----LPEGATLLASTPACRHQAFAWGN- 169 (234)
T ss_pred HHcCCcEecCC-CCeEe-EEEEEEeccccCChh-hcCCCcceEEEEeCCEEe----cCCCCEEEEcCCCCCeeEEEeCC-
Confidence 99999999864 44344 5555544 3445555 467778899999999985 45899999999999999999864
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
++||+|||||++ ..++..|+.
T Consensus 170 -~~~g~QfHpE~~-----~~~~~~w~~ 190 (234)
T PRK07053 170 -HVLALQFHPEAR-----EDRFEAWLI 190 (234)
T ss_pred -CEEEEeeCccCC-----HHHHHHHHH
Confidence 599999999997 556666654
No 40
>PRK05665 amidotransferase; Provisional
Probab=99.97 E-value=2.8e-30 Score=203.23 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=118.4
Q ss_pred HHHHHHhCCC--eEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHH----HH-hCCCCCEEeeeHhHHHHHH
Q 029484 3 FLKYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV----LE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~--~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~----~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
+.+++...+. ++.++......... ...+|||+||+||+.++++..+|+..+ ++ +++++|+||||+|+|+|+.
T Consensus 28 ~~~ll~~~~~~~~~~~~~~~~~~~p~-~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~ 106 (240)
T PRK05665 28 FEQLFARQPIAAEFVVYNVVQGDYPA-DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLAL 106 (240)
T ss_pred HHHHHHhCCCCceEEEEeccCCCCCC-CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHH
Confidence 3455666664 45555433221111 223799999999999999888886443 32 4678999999999999999
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
++||+|.+.+.+.+.|. ..+.... ..+++..++..+.++.+|+|.|.. ++++++++|+|+.+.+|+++..+ +
T Consensus 107 AlGG~V~~~~~G~e~G~-~~~~~~~--~~~~~~~~~~~~~~~~~H~D~V~~---LP~ga~~La~s~~~~~q~~~~~~--~ 178 (240)
T PRK05665 107 LLGGKAERASQGWGVGI-HRYQLAA--HAPWMSPAVTELTLLISHQDQVTA---LPEGATVIASSDFCPFAAYHIGD--Q 178 (240)
T ss_pred HhCCEEEeCCCCcccce-EEEEecC--CCccccCCCCceEEEEEcCCeeee---CCCCcEEEEeCCCCcEEEEEeCC--C
Confidence 99999999876544443 3344332 456888888899999999999976 66899999999999999999765 4
Q ss_pred eEEEeccCCCC
Q 029484 156 LQGVQFHPESI 166 (192)
Q Consensus 156 ~~g~QfHPE~~ 166 (192)
+||+|||||++
T Consensus 179 ~~g~QfHPE~~ 189 (240)
T PRK05665 179 VLCFQGHPEFV 189 (240)
T ss_pred EEEEecCCcCc
Confidence 99999999996
No 41
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.97 E-value=4.1e-30 Score=202.06 Aligned_cols=165 Identities=23% Similarity=0.284 Sum_probs=126.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC---cchhH------HHHHH-hCCCCCEEeeeHhHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISL------QTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~---~~~~~------~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
+..++++.|+++.++..+..........++||+||+||+.++.+ ..+|+ +.+++ ++.++||||||+|+|+
T Consensus 17 ~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Ql 96 (235)
T PRK08250 17 YLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQL 96 (235)
T ss_pred HHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHH
Confidence 56788999999999876532211101237999999999998653 23333 33443 4689999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeE-EcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVY-YDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
|+.++||+|.+.+. .+.|.. ++. +..+..+++++++++++.+++||++.+. ++++++++|+|+.+.+|+++..
T Consensus 97 la~alGg~V~~~~~-~e~G~~-~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~----lP~~a~~LA~s~~~~~qa~~~~ 170 (235)
T PRK08250 97 IGEALGAKYEHSPE-KEIGYF-PITLTEAGLKDPLLSHFGSTLTVGHWHNDMPG----LTDQAKVLATSEGCPRQIVQYS 170 (235)
T ss_pred HHHHhCceeccCCC-CceeEE-EEEEccccccCchhhcCCCCcEEEEEecceec----CCCCCEEEECCCCCCceEEEeC
Confidence 99999999998874 445544 554 4455577899999999999999999764 4589999999999999999987
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+ ++||+|||||.+ ..+++.++.
T Consensus 171 ~--~~~g~QfHPE~~-----~~~~~~~~~ 192 (235)
T PRK08250 171 N--LVYGFQCHMEFT-----VEAVELLIA 192 (235)
T ss_pred C--CEEEEeecCcCC-----HHHHHHHHH
Confidence 5 499999999996 455555554
No 42
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.97 E-value=4.9e-30 Score=195.68 Aligned_cols=145 Identities=23% Similarity=0.377 Sum_probs=114.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCC--------------cc--hh-HHHHHH-hCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG--IS-LQTVLE-LGPTV 61 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~--------------~~--~~-~~~~~~-~~~~~ 61 (192)
+++++++.+|+.+.+++.. .+.+++.. .++||||++||++...+ .. .+ .+.++. ++.++
T Consensus 23 ~~~~~l~~~G~~~~iv~~~-~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 101 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPV-DDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGK 101 (189)
T ss_pred HHHHHHHHCCCEEEEeCCC-CChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCC
Confidence 6789999999999999875 33333321 37999999999876422 00 01 223333 46789
Q ss_pred CEEeeeHhHHHHHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 62 PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
||||||+|+|+|+.++||++.+.. .++.+|++.|.. ++++++++|+++
T Consensus 102 PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~---~~~~~~vla~~~ 149 (189)
T cd01745 102 PILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR---LADGLRVEARAP 149 (189)
T ss_pred CEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh---cCCCCEEEEECC
Confidence 999999999999999999997654 456789999975 568899999999
Q ss_pred CCceEEEeeCCCCceEEEeccCCCCCC--CchHHHHHHHH
Q 029484 142 DGLIMAARHKKYKHLQGVQFHPESIIT--TEGKTIVRNFI 179 (192)
Q Consensus 142 ~~~i~ai~~~~~~~~~g~QfHPE~~~~--~~~~~l~~~f~ 179 (192)
++.++|++++++++++|+|||||+..+ +++.+||++|+
T Consensus 150 d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 150 DGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred CCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 999999999873459999999999987 69999999984
No 43
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=193.59 Aligned_cols=177 Identities=22% Similarity=0.323 Sum_probs=128.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCC--Cc---------------chh-HHHHH-HhCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ--DS---------------GIS-LQTVL-ELGPT 60 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~--~~---------------~~~-~~~~~-~~~~~ 60 (192)
++++....+|.-...+|.- .+.+.+.. ...||||++|| .+.. -+ +.+ +..++ +++++
T Consensus 30 ~yv~ai~~aGg~pillP~~-~d~~~~~~~l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~ 107 (243)
T COG2071 30 DYVDAIIKAGGIPILLPAL-EDPEDARQYLDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERG 107 (243)
T ss_pred HHHHHHHHcCCceEEecCC-CCHHHHHHHHhhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcC
Confidence 3566777788888888842 22333322 26899999999 4431 00 011 23444 37899
Q ss_pred CCEEeeeHhHHHHHHHhCCeeeecCCcc-----------ccccceeeEEcccCCCccccCCCCc-ccccccccccccccC
Q 029484 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGV-----------MHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLVIEKES 128 (192)
Q Consensus 61 ~PilGIC~G~Q~l~~~~gg~v~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~~v~~~~ 128 (192)
+||||||+|+|+|+.++||++.+.-... ..-..+.+.+.. .+.|.+-+++. +.+++.|+++|.+
T Consensus 108 iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~--~s~La~i~g~~~~~VNS~HhQaIk~-- 183 (243)
T COG2071 108 IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEP--GSKLAKILGESEFMVNSFHHQAIKK-- 183 (243)
T ss_pred CCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecC--CccHHHhcCccceeecchHHHHHHH--
Confidence 9999999999999999999999864210 011122233332 33344444445 8999999999988
Q ss_pred CCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCC--chHHHHHHHHHHHHHH
Q 029484 129 FPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT--EGKTIVRNFIKMIVRK 185 (192)
Q Consensus 129 l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~--~~~~l~~~f~~~~~~~ 185 (192)
+++++++.|.++|+.|+|+++++..+++|+|||||+.... ..+.||+.|++.+...
T Consensus 184 -La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 184 -LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred -hCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999877899999999998765 5789999999988765
No 44
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.9e-29 Score=188.01 Aligned_cols=164 Identities=27% Similarity=0.378 Sum_probs=125.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
|+.++++.+|+++.+... .+++. +.|+||++| .|...+... +.+.+++ ...++|+||||+|||+|.
T Consensus 16 Sv~~Aler~G~~~~vs~d----~~~i~--~AD~liLPG-VGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf 88 (204)
T COG0118 16 SVKKALERLGAEVVVSRD----PEEIL--KADKLILPG-VGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLF 88 (204)
T ss_pred HHHHHHHHcCCeeEEecC----HHHHh--hCCEEEecC-CCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh
Confidence 788999999999998863 56666 789999885 566554433 2334443 567799999999999999
Q ss_pred H------------HhCCeeeecCC---ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEE
Q 029484 75 E------------AFGGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW 139 (192)
Q Consensus 75 ~------------~~gg~v~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~ 139 (192)
+ .+.|+|.+.+. ..+|++|+.+... ..++||.++++.-.+++.|+|++.. .+.-.++++
T Consensus 89 e~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~--~~~~l~~gi~~~~~~YFVHSY~~~~----~~~~~v~~~ 162 (204)
T COG0118 89 ERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFV--RGHPLFKGIPDGAYFYFVHSYYVPP----GNPETVVAT 162 (204)
T ss_pred hcccccCCCCCcceecceEEEcCCCCCCCCccccceeecc--CCChhhcCCCCCCEEEEEEEEeecC----CCCceEEEe
Confidence 9 45678887653 4679999998887 4789999998767889999999873 234456676
Q ss_pred cCCC-c-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 140 TEDG-L-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 140 s~~~-~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++.+ . .++++ ++ |++|+|||||++ +..|.++++||++..
T Consensus 163 ~~YG~~f~AaV~-k~--N~~g~QFHPEKS-g~~Gl~lL~NFl~~~ 203 (204)
T COG0118 163 TDYGEPFPAAVA-KD--NVFGTQFHPEKS-GKAGLKLLKNFLEWI 203 (204)
T ss_pred ccCCCeeEEEEE-eC--CEEEEecCcccc-hHHHHHHHHHHHhhc
Confidence 6655 3 55554 43 599999999997 889999999999864
No 45
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.96 E-value=6.7e-29 Score=221.46 Aligned_cols=178 Identities=27% Similarity=0.452 Sum_probs=134.9
Q ss_pred CcHHHHHHhC---CCeEEEEeCCCCCHHHHh-ccCCCeEEECCCCCCCCCcch--hHHHHHHh--CCCCCEEeeeHhHHH
Q 029484 1 MTFLKYMGEL---GYHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGI--SLQTVLEL--GPTVPLFGVCMGLQC 72 (192)
Q Consensus 1 ~~l~~~l~~~---g~~~~v~~~~~~~~~~~~-~~~~dglii~GG~~~~~~~~~--~~~~~~~~--~~~~PilGIC~G~Q~ 72 (192)
+||++.|++. ++++.+++++....+.+. ..++|+|||+||||++.+... +.+.+.+. ..++||||||+|||+
T Consensus 19 ~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~Ql 98 (742)
T TIGR01823 19 YNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQS 98 (742)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhhHH
Confidence 3789999986 367888887644433322 237999999999999975443 33333332 246999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCC--eEEEEEcCC-CceEEEe
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTED-GLIMAAR 149 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~-~~i~ai~ 149 (192)
|+.++||++.+.+. ..+|....+... .+.+|.+++. +.++.+|++.+..+ .++. +.+++.+++ +.++|++
T Consensus 99 La~a~GG~v~~~~~-~~hG~~~~v~~~---~~~lf~gl~~-~~v~~~Hs~~v~~~--~~~~l~~~~~a~~~~~~~i~ai~ 171 (742)
T TIGR01823 99 LCLAQGADISRLPT-PKHGQVYEMHTN---DAAIFCGLFS-VKSTRYHSLYANPE--GIDTLLPLCLTEDEEGIILMSAQ 171 (742)
T ss_pred HHhhcCCEEEECCC-CCcCeEEEEEEC---CccccCCCCC-CceeEEEEEEccCC--CCCcceEEEEEEcCCCCeEEEEE
Confidence 99999999999874 457766655543 4568988875 88999999988642 1233 456666654 4799999
Q ss_pred eCCCCceEEEeccCCCCCCCc-hHHHHHHHHHHHHHHh
Q 029484 150 HKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKE 186 (192)
Q Consensus 150 ~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~~ 186 (192)
++++| +||+|||||+..++. +.+||+||++++.+.+
T Consensus 172 h~~~p-i~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 172 TKKKP-WFGVQYHPESCCSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred EcCCc-eEEEEeCcccCCCCccHHHHHHHHHHHHHHhh
Confidence 99988 999999999987776 4999999999988765
No 46
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=6.6e-29 Score=190.85 Aligned_cols=162 Identities=26% Similarity=0.354 Sum_probs=120.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
+++++|+.+|+++++++. .+++. ++|+||++|| +.+.+. ....+.+++ +++++||||||+|+|+|+
T Consensus 13 ~~~~~l~~~g~~v~v~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~ 85 (198)
T cd01748 13 SVANALERLGAEVIITSD----PEEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLF 85 (198)
T ss_pred HHHHHHHHCCCeEEEEcC----hHHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhc
Confidence 578999999999999984 23444 7999999765 443322 112344444 567999999999999999
Q ss_pred HH------------hCCeeeecCCc----cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE
Q 029484 75 EA------------FGGKIVRSPLG----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 138 (192)
Q Consensus 75 ~~------------~gg~v~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 138 (192)
.+ ++|++.+.+.. ..+.++..+... .++++|++++..+.++++|++.+.. + +.+.++|
T Consensus 86 ~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~--~~~~lf~~l~~~~~v~~~Hs~~v~~---~-~~~~~la 159 (198)
T cd01748 86 ESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEIT--KESPLFKGIPDGSYFYFVHSYYAPP---D-DPDYILA 159 (198)
T ss_pred cccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEEC--CCChhhhCCCCCCeEEEEeEEEEec---C-CcceEEE
Confidence 98 78999886531 123345555443 3677999999999999999999974 3 4577889
Q ss_pred EcCCCc-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 139 WTEDGL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 139 ~s~~~~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
+++++. .+++. .+.+ +||+|||||++ .+.+.++++||+
T Consensus 160 ~s~~~~~~~~~~-~~~~-i~GvQFHPE~~-~~~g~~~~~nf~ 198 (198)
T cd01748 160 TTDYGGKFPAAV-EKDN-IFGTQFHPEKS-GKAGLKLLKNFL 198 (198)
T ss_pred EecCCCeEEEEE-EcCC-EEEEECCCccc-cHhHHHHHHhhC
Confidence 887654 55544 3444 99999999998 679999999995
No 47
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.7e-28 Score=188.08 Aligned_cols=160 Identities=24% Similarity=0.350 Sum_probs=117.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh------HHHHHHhCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS------LQTVLELGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~------~~~~~~~~~~~PilGIC~G~Q~l~~ 75 (192)
|+.++|+..|+++++++. .+++. ++|+||+ +|+|.+.+.... .+.+++ .++||||||+|+|+|++
T Consensus 15 s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~--~~~PilGIClG~Qll~~ 85 (196)
T PRK13170 15 SVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIKA--CTQPVLGICLGMQLLGE 85 (196)
T ss_pred HHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHHH--cCCCEEEECHHHHHHhh
Confidence 788999999999999974 35555 6899998 556766554332 333333 47999999999999999
Q ss_pred HhC------------CeeeecC---CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc
Q 029484 76 AFG------------GKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT 140 (192)
Q Consensus 76 ~~g------------g~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 140 (192)
+++ +++.+.. ...++.+|+.+.... ++++++++++.+.++++|++.+. .+..++|++
T Consensus 86 ~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~--~~~l~~~l~~~~~v~~~Hs~~lp------~~~~~la~s 157 (196)
T PRK13170 86 RSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQA--GHPLFQGIEDGSYFYFVHSYAMP------VNEYTIAQC 157 (196)
T ss_pred hcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCC--CChhhhCCCcCCEEEEECeeecC------CCCcEEEEe
Confidence 973 3555532 123456677776543 56799999999999999998764 235678888
Q ss_pred CCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 141 EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 141 ~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+++...+....+.+ +||+|||||++ .+.|.+|++||++
T Consensus 158 ~~~~~~~~~~~~~~-i~G~QFHPE~~-~~~G~~~l~nfl~ 195 (196)
T PRK13170 158 NYGEPFSAAIQKDN-FFGVQFHPERS-GAAGAQLLKNFLE 195 (196)
T ss_pred cCCCeEEEEEEcCC-EEEEECCCCCc-ccccHHHHHHHhh
Confidence 76543333333444 99999999998 6899999999985
No 48
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=1.1e-28 Score=190.81 Aligned_cols=165 Identities=24% Similarity=0.318 Sum_probs=122.7
Q ss_pred cHHHHHHhCCCe--EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch-----hHHH-HHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYH--FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQT-VLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~--~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~-----~~~~-~~~-~~~~~PilGIC~G~Q~ 72 (192)
+++++|+.+|.+ +.+++ +.+++. ++|+|||+|+..+..+... +... ++. .+.++|+||||+|+|+
T Consensus 16 s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~ 89 (209)
T PRK13146 16 SAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQL 89 (209)
T ss_pred HHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHH
Confidence 678999999994 44443 356665 8999999986443222111 1222 233 3588999999999999
Q ss_pred HHHH------------hCCeeeec-CC----ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeE
Q 029484 73 IGEA------------FGGKIVRS-PL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALE 135 (192)
Q Consensus 73 l~~~------------~gg~v~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~ 135 (192)
|+.+ ++|++.+. +. ..++.+|+.+.... ++++|+++++.+.++++|++.+.. + ++..
T Consensus 90 l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~--~~~lf~~~~~~~~v~~~Hs~~v~~---~-~~~~ 163 (209)
T PRK13146 90 LFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTR--DHPLFAGIPDGARFYFVHSYYAQP---A-NPAD 163 (209)
T ss_pred HhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCC--CChhccCCCCCCEEEEEeEEEEEc---C-CCCc
Confidence 9999 89999886 21 22356677776543 678999999999999999999974 3 3568
Q ss_pred EEEEcCCC-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 136 VTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 136 ~~a~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
++|+++++ .++++... . ++||+|||||++ .+.+..|++||++.
T Consensus 164 ~la~s~~~~~~~a~~~~-~-~i~GvQFHPE~s-~~~G~~ll~nfl~~ 207 (209)
T PRK13146 164 VVAWTDYGGPFTAAVAR-D-NLFATQFHPEKS-QDAGLALLRNFLAW 207 (209)
T ss_pred EEEEEcCCCEEEEEEec-C-CEEEEEcCCccc-HHHHHHHHHHHHhh
Confidence 88988765 47777654 3 499999999997 67999999999875
No 49
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.96 E-value=1.9e-28 Score=189.27 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=120.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHH-HhCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVL-ELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~-~~~~~~PilGIC~G~Q~l~ 74 (192)
++.++++.+|+++.+++. .+++. ++|+||++ |++++..... +...++ .++.++|+||||+|||+|+
T Consensus 16 sl~~al~~~g~~v~vv~~----~~~l~--~~d~iIlP-G~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~ 88 (210)
T CHL00188 16 SVSRAIQQAGQQPCIINS----ESELA--QVHALVLP-GVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLF 88 (210)
T ss_pred HHHHHHHHcCCcEEEEcC----HHHhh--hCCEEEEC-CCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHh
Confidence 688999999999999964 24554 68998865 5577543211 223333 3567999999999999999
Q ss_pred HH-----------hCCeeeecCC----ccccccceeeEEcccC----CCccccCCCCcccccccccccccccCCCCCCeE
Q 029484 75 EA-----------FGGKIVRSPL----GVMHGKSSLVYYDEKG----EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALE 135 (192)
Q Consensus 75 ~~-----------~gg~v~~~~~----~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~ 135 (192)
+. ++|++.+... ..++.+|+.+...... ++++|+++++.+.++++|++.+.+ +. ..
T Consensus 89 ~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p----~~-~~ 163 (210)
T CHL00188 89 ETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMP----KS-QA 163 (210)
T ss_pred hccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecC----CC-Cc
Confidence 85 5677777631 2356678888765431 146999999999999999998853 22 23
Q ss_pred EEEEc----CCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 136 VTAWT----EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 136 ~~a~s----~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
.++.+ .++.+++++.. +++|+|||||++ ++.|..|++||+.+
T Consensus 164 ~l~~t~~~~~~~~v~a~~~~---~i~GvQFHPE~s-~~~G~~il~nfl~~ 209 (210)
T CHL00188 164 CATTTTFYGKQQMVAAIEYD---NIFAMQFHPEKS-GEFGLWLLREFMKK 209 (210)
T ss_pred eEEEEEecCCcceEEEEecC---CEEEEecCCccc-cHhHHHHHHHHHhh
Confidence 33333 25569999853 499999999998 88999999999875
No 50
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=3.5e-28 Score=187.78 Aligned_cols=166 Identities=30% Similarity=0.396 Sum_probs=125.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
+++++|+..|+++.+++. .+++. ++|+||++|| +.+.+.. ...+.+++ ++.++|+||||+|+|+|+
T Consensus 14 ~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~ 86 (205)
T PRK13141 14 SVEKALERLGAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLF 86 (205)
T ss_pred HHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhh
Confidence 588999999999999863 34555 7999999875 3322211 12344444 468899999999999999
Q ss_pred HH------------hCCeeeecCCc----cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE
Q 029484 75 EA------------FGGKIVRSPLG----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 138 (192)
Q Consensus 75 ~~------------~gg~v~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 138 (192)
.+ +++++.+.+.+ ..+.++..+..+. ++++++.++..+.++.+|++.+. +++++.++|
T Consensus 87 ~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~--~~~l~~~l~~~~~v~~~Hs~~v~----~~~~~~v~a 160 (205)
T PRK13141 87 ESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKK--ESPLLKGIPDGAYVYFVHSYYAD----PCDEEYVAA 160 (205)
T ss_pred hccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCC--CChhhhCCCCCCEEEEECeeEec----cCCcCeEEE
Confidence 97 67888876521 2244555555543 67899999888889999999985 346788899
Q ss_pred EcCCC-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 139 WTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 139 ~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++++ .++++...+ ++||+|||||+. .+.+.+||++|++.+.
T Consensus 161 ~~~~~~~~~a~~~~~--~i~GvQfHPE~~-~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 161 TTDYGVEFPAAVGKD--NVFGAQFHPEKS-GDVGLKILKNFVEMVE 203 (205)
T ss_pred EEeCCcEEEEEEecC--CEEEEeCCCccc-hHHHHHHHHHHHHHhh
Confidence 88766 688886543 499999999996 5789999999998763
No 51
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=7e-28 Score=186.11 Aligned_cols=167 Identities=24% Similarity=0.307 Sum_probs=120.2
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
+|+.+.++..+.++..+.. .+++. ++|+||++|+ +++.+.. .+...+++ +.+++|+||||+|||+|
T Consensus 13 ~s~~~al~~~~~~~~~~~~----~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l 85 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTSD----PETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQIL 85 (210)
T ss_pred HHHHHHHHHcCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHH
Confidence 3678899999998887753 45565 8899997776 5543322 12333433 67899999999999999
Q ss_pred HHHhC------------------CeeeecC---CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCC
Q 029484 74 GEAFG------------------GKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSD 132 (192)
Q Consensus 74 ~~~~g------------------g~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~ 132 (192)
+++.+ +++.+.. ...++.+|+.+......++++|+++++.+.++++|+|.... ..
T Consensus 86 ~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS~~~~~----~~ 161 (210)
T PRK14004 86 FESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYRPTG----AE 161 (210)
T ss_pred HHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCCCEEEEeceeecCC----CC
Confidence 99753 5656543 23468888888765445678999999999999999996532 23
Q ss_pred CeEEEEEcCC-Cc-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 133 ALEVTAWTED-GL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 133 ~~~~~a~s~~-~~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
...+++.++. +. ++++.. +. ++||+|||||++. +.|..|++||++.
T Consensus 162 ~l~~sa~~~~~g~~~~a~~~-~~-~i~GvQFHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 162 GNAITGLCDYYQEKFPAVVE-KE-NIFGTQFHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred cceEEEeeeECCEEEEEEEe-cC-CEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 3455565544 33 445553 33 4999999999985 7999999999875
No 52
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.96 E-value=7.7e-28 Score=183.46 Aligned_cols=157 Identities=24% Similarity=0.403 Sum_probs=115.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
..++++..|+++..++. .+++. ++||||++||+++..+.. .+.+.+++ .++++|+||||+|+|+|+.++
T Consensus 16 ~~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 89 (189)
T PRK13525 16 HLAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEI 89 (189)
T ss_pred HHHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhc
Confidence 35678899999988863 34444 799999999987654322 12234444 568899999999999999999
Q ss_pred CC-----------eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceE
Q 029484 78 GG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 146 (192)
Q Consensus 78 gg-----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ 146 (192)
|+ ++.+..++...+.. . .+.++.++++.+.++++|+|.|.. ++++++++|++++ .++
T Consensus 90 gg~~~~~lg~~~~~v~~~~~g~~~g~~-----~---~~~~~~~~~~~~~~~~~H~d~v~~---lp~~~~vlA~~~~-~~~ 157 (189)
T PRK13525 90 EGYEQEHLGLLDITVRRNAFGRQVDSF-----E---AELDIKGLGEPFPAVFIRAPYIEE---VGPGVEVLATVGG-RIV 157 (189)
T ss_pred ccCCCCceeeEEEEEEEccCCCceeeE-----E---ecccccCCCCCeEEEEEeCceeec---cCCCcEEEEEcCC-EEE
Confidence 98 45554433322211 1 234667777789999999999976 5689999999875 445
Q ss_pred EEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 147 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 147 ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++.. ++||+|||||++ ...+||++|++.++
T Consensus 158 ~~~~~---~~~g~QfHPE~~---~~~~~~~~f~~~~~ 188 (189)
T PRK13525 158 AVRQG---NILATSFHPELT---DDTRVHRYFLEMVK 188 (189)
T ss_pred EEEeC---CEEEEEeCCccC---CCchHHHHHHHHhh
Confidence 77643 499999999997 34799999998875
No 53
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=1.3e-27 Score=184.06 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=118.7
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh------HHHHHH--hCCCCCEEeeeHhHHH
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS------LQTVLE--LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~------~~~~~~--~~~~~PilGIC~G~Q~ 72 (192)
+|+.+.++..|+++.+++. .+++. ++|+||+ +|++++.+...+ ...+.+ ++.++||||||+|||+
T Consensus 13 ~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~ 85 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQL 85 (201)
T ss_pred HHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHH
Confidence 4788999999999888764 34554 7999999 455776544322 233433 4689999999999999
Q ss_pred HHHH------------hCCeeeecCC----ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEE
Q 029484 73 IGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEV 136 (192)
Q Consensus 73 l~~~------------~gg~v~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 136 (192)
|+.+ ++|++.+... ...+++|+.+.... ++++|++++..+.++++|++.+.. ++ ..+
T Consensus 86 l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~--~~~l~~~l~~~~~~~~vHS~~v~~---~~--~~v 158 (201)
T PRK13152 86 FLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILK--QSPLYQGIPEKSDFYFVHSFYVKC---KD--EFV 158 (201)
T ss_pred HhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECC--CChhhhCCCCCCeEEEEcccEeec---CC--CcE
Confidence 9997 2266765431 12467788776543 577999998889999999999964 32 356
Q ss_pred EEEcCCC--ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 137 TAWTEDG--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 137 ~a~s~~~--~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
++.++++ .+++++. . +++|+|||||++ .+.+.+||++|++
T Consensus 159 ~a~~~~g~~~~~a~~~--~-~i~GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 159 SAKAQYGHKFVASLQK--D-NIFATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred EEEECCCCEEEEEEec--C-CEEEEeCCCeec-ChhhHHHHHHHHh
Confidence 6766655 4566663 2 499999999997 6689999999986
No 54
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=8.9e-28 Score=184.71 Aligned_cols=162 Identities=25% Similarity=0.282 Sum_probs=117.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
+++++++.+|++++++.. .+++. ++|+||++|| +++.... .+.+.+++ ++.++||||||+|+|+|+
T Consensus 14 ~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~ 86 (199)
T PRK13181 14 SVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLF 86 (199)
T ss_pred HHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhh
Confidence 688999999999988853 45554 7999998775 4432111 12333443 568899999999999999
Q ss_pred HH-----------hCCeeeecCCc---cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc
Q 029484 75 EA-----------FGGKIVRSPLG---VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT 140 (192)
Q Consensus 75 ~~-----------~gg~v~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 140 (192)
.+ +++++.+.+.. ..+.+|..+... .++++|+.++..+.++++|++.+.. + +...++|++
T Consensus 87 ~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~--~~~~lf~~l~~~~~~~~~Hs~~v~~---~-~~~~~lA~s 160 (199)
T PRK13181 87 ESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL--KESPLFKGIEEGSYFYFVHSYYVPC---E-DPEDVLATT 160 (199)
T ss_pred hhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccC--CCChhHcCCCCCCEEEEeCeeEecc---C-CcccEEEEE
Confidence 99 78888886521 123445555433 3678999999889999999998864 3 345688888
Q ss_pred CCCce--EEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 141 EDGLI--MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 141 ~~~~i--~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+++.. ++++ +.+ +||+|||||++ .+.+..|++||++
T Consensus 161 ~~~~~~~~~~~--~~~-i~GvQFHPE~~-~~~g~~ll~nfl~ 198 (199)
T PRK13181 161 EYGVPFCSAVA--KDN-IYAVQFHPEKS-GKAGLKLLKNFAE 198 (199)
T ss_pred cCCCEEEEEEE--CCC-EEEEECCCccC-CHHHHHHHHHHHh
Confidence 76442 3343 334 99999999997 6789999999985
No 55
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.95 E-value=5.6e-28 Score=189.54 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=117.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCCCCCCcchhHHHHH-HhCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~~~~~~~~~~~~~~-~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
|.++..+.+.++.+...+....+.. ...++||||++||++.+...+.. ..++ .++.++|+||||+|||+|+.++
T Consensus 23 L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~~~~~~-~~i~~~~~~~~PvlGIClG~Q~l~~~~ 101 (235)
T cd01746 23 LKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGVEGKI-LAIKYARENNIPFLGICLGMQLAVIEF 101 (235)
T ss_pred HHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcchhhHH-HHHHHHHHCCceEEEEEhHHHHHHHHH
Confidence 4555666777777765432221111 11379999999999887665433 3333 3568999999999999999999
Q ss_pred CCeeeecCCccc----cccceeeEE----------------------cccCCCccccCCC-Cccccccccccccccc---
Q 029484 78 GGKIVRSPLGVM----HGKSSLVYY----------------------DEKGEDGLLAGLS-NPFTAGRYHSLVIEKE--- 127 (192)
Q Consensus 78 gg~v~~~~~~~~----~~~~~~~~~----------------------~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~--- 127 (192)
|+++...+.... ....+++.. .....+.|.+-++ +...++++|+++|+++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~~~ 181 (235)
T cd01746 102 ARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVD 181 (235)
T ss_pred HHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHHHH
Confidence 999877653210 111111110 0011222222223 2467889999998642
Q ss_pred CCCCCCeEEEEEcC-CCceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHH
Q 029484 128 SFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI 179 (192)
Q Consensus 128 ~l~~~~~~~~a~s~-~~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~ 179 (192)
++...+++++|++. |+.|++++.+++|+++|+|||||+...+ +..+||+.|+
T Consensus 182 ~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 182 ELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred HHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 23368899999998 8999999999999777999999998765 5678999885
No 56
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.95 E-value=1.7e-27 Score=183.30 Aligned_cols=167 Identities=23% Similarity=0.298 Sum_probs=119.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++.++++..|++++++.... .+++. ++|+|||+||+++..+.. .+.+.+++ +..++|+||||+|+|+|+.+
T Consensus 18 ~~~~~l~~~g~~~~~~~~~~--~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 18 ALKRALDELGIDGEVVEVRR--PGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred HHHHHHHhcCCCeEEEEeCC--hHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 46789999999999888642 34554 799999999988764221 12344444 56789999999999999999
Q ss_pred hCCeeeecCCccccccceeeEEc---ccC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEE
Q 029484 77 FGGKIVRSPLGVMHGKSSLVYYD---EKG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 147 (192)
Q Consensus 77 ~gg~v~~~~~~~~~~~~~~~~~~---~~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a 147 (192)
+||...........|. .+..+. .++ .+.++.++++++.++++|++.+.. ++++++++|+++++.+ +
T Consensus 94 ~gg~~v~~~~~~~lG~-~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~---lp~~~~~la~~~~~~~-a 168 (200)
T PRK13527 94 VGDDRVTKTEQPLLGL-MDVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAITK---VGGDVEVLAKLDDRIV-A 168 (200)
T ss_pred hcCCccCCCCCceeee-eEEEEeeccccCccccEEEeEeccccCCcceEEEEccccccc---cCCCeEEEEEECCEEE-E
Confidence 9984433221222332 222221 111 234577778899999999999875 5689999999998865 6
Q ss_pred EeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 148 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 148 i~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++. . ++||+|||||.+. ..+|+++|++.+.
T Consensus 169 ~~~--~-~~~g~QfHPE~~~---~~~l~~~f~~~~~ 198 (200)
T PRK13527 169 VEQ--G-NVLATAFHPELTD---DTRIHEYFLKKVK 198 (200)
T ss_pred EEE--C-CEEEEEeCCCCCC---CCHHHHHHHHHHh
Confidence 653 2 4999999999862 2899999999874
No 57
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.95 E-value=7.9e-28 Score=187.09 Aligned_cols=156 Identities=28% Similarity=0.393 Sum_probs=105.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCC---------C-cch--hH------HHHH-HhCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQ---------D-SGI--SL------QTVL-ELGPT 60 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~---------~-~~~--~~------~~~~-~~~~~ 60 (192)
+.+++++++|..+.++++. .+.+++... .+||||++||..+.. . ... .. ..++ +.+++
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~ 106 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG 106 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999985 344544332 899999999985431 0 011 11 1122 35799
Q ss_pred CCEEeeeHhHHHHHHHhCCeeeecCCccc----------cccceeeEEcccCCCccccCCC--CcccccccccccccccC
Q 029484 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVM----------HGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLVIEKES 128 (192)
Q Consensus 61 ~PilGIC~G~Q~l~~~~gg~v~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~v~~~~ 128 (192)
+||||||+|||+|+.++||++........ ....+.+... .++++..+- ..+.++++|+++|.+
T Consensus 107 ~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~---~~s~l~~~~~~~~~~vns~Hhq~v~~-- 181 (217)
T PF07722_consen 107 KPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIV---PGSLLAKILGSEEIEVNSFHHQAVKP-- 181 (217)
T ss_dssp --EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEE---TTSTCCCTSHHCTEEEEEEECEEECC--
T ss_pred CCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceec---cCchHHHHhCcCcceeecchhhhhhc--
Confidence 99999999999999999999988764310 1122223332 344444443 578999999999987
Q ss_pred CCCCCeEEEEEcCCCceEEEeeCCCC-ceEEEeccCC
Q 029484 129 FPSDALEVTAWTEDGLIMAARHKKYK-HLQGVQFHPE 164 (192)
Q Consensus 129 l~~~~~~~~a~s~~~~i~ai~~~~~~-~~~g~QfHPE 164 (192)
++++++++|+++|+.++||+..+++ +++|+|||||
T Consensus 182 -l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 182 -LGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp -HHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred -cCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 6789999999999999999999965 6999999999
No 58
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.95 E-value=1e-26 Score=186.25 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=118.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCCcc--hhHHHH-H---H-hC--CCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG--ISLQTV-L---E-LG--PTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~~~--~~~~~~-~---~-~~--~~~PilGIC~G~ 70 (192)
+.+++++++|+.+.++..+ .+.+++.. ..+||||++||+.+..... ...+.+ + + .+ ..+||||||+||
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~-~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~ 102 (273)
T cd01747 24 SYVKFLESAGARVVPIWIN-ESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF 102 (273)
T ss_pred HHHHHHHHCCCeEEEEEeC-CcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHH
Confidence 5789999999999999875 33344433 2789999999987664221 111212 1 1 12 249999999999
Q ss_pred HHHHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCC--------cccccccccccccccCCCC-----CCeEE
Q 029484 71 QCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPS-----DALEV 136 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~-----~~~~~ 136 (192)
|+|+.++||++........++...++..+. ..++++|++++. ...++++|+++++.+.++. ..+++
T Consensus 103 QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~v 182 (273)
T cd01747 103 ELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNV 182 (273)
T ss_pred HHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEE
Confidence 999999999765433233456656666543 346778888864 3468899999997554432 45688
Q ss_pred EEEcCC--Cc--eEEEeeCCCCceEEEeccCCCCCCCch
Q 029484 137 TAWTED--GL--IMAARHKKYKHLQGVQFHPESIITTEG 171 (192)
Q Consensus 137 ~a~s~~--~~--i~ai~~~~~~~~~g~QfHPE~~~~~~~ 171 (192)
++++.| +. |++++++++| ++|+|||||+...+++
T Consensus 183 la~~~d~~g~~fis~ie~~~~p-i~gvQFHPEks~few~ 220 (273)
T cd01747 183 LTTNDDWNGVEFISTVEAYKYP-IYGVQWHPEKNAFEWK 220 (273)
T ss_pred EEEEecCCCceEEEEEEecCCc-eEEEecCCCccccccc
Confidence 998755 43 7999999987 9999999999876543
No 59
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.95 E-value=3.2e-27 Score=181.12 Aligned_cols=162 Identities=23% Similarity=0.268 Sum_probs=115.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh-----HHHH-H-HhCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS-----LQTV-L-ELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~-----~~~~-~-~~~~~~PilGIC~G~Q~l~ 74 (192)
++.++++..|+++++++.+ +++. ++|+||++|+ +++.+...+ .+.+ + .++.++||||||+|+|+|+
T Consensus 13 ~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~ 85 (196)
T TIGR01855 13 SVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLF 85 (196)
T ss_pred HHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhh
Confidence 6889999999999999842 3444 7999999763 443322111 1222 3 3578899999999999999
Q ss_pred HH------------hCCeeeecCCc-cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 75 EA------------FGGKIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 75 ~~------------~gg~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
.+ +|+++.+.+.. ....++..+.. ..++++|+++++.+.++.+|++.++. ++ .. +++.++
T Consensus 86 ~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~--~~~~~l~~~l~~~~~v~~~Hs~~v~~---~~-~~-~~a~~~ 158 (196)
T TIGR01855 86 ERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHP--VKESPLLNGIDEGAYFYFVHSYYAVC---EE-EA-VLAYAD 158 (196)
T ss_pred hccccCCCCCCcceeeEEEEECCCCCCCcccCeeeee--CCCChHHhCCCCCCEEEEECeeEecC---CC-Cc-EEEEEc
Confidence 98 78898887421 12333444433 34678999999999999999999974 33 43 566565
Q ss_pred C-CceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 142 D-GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 142 ~-~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+ +..+++ ....+ +||+|||||+. .+.+.+|++||++
T Consensus 159 ~g~~~~~~-~~~~~-i~GvQFHPE~~-~~~g~~ll~~f~~ 195 (196)
T TIGR01855 159 YGEKFPAA-VQKGN-IFGTQFHPEKS-GKTGLKLLENFLE 195 (196)
T ss_pred CCcEEEEE-EecCC-EEEEECCCccC-cHhHHHHHHHHHh
Confidence 5 444444 34444 99999999987 5689999999986
No 60
>PRK06186 hypothetical protein; Validated
Probab=99.95 E-value=5.2e-27 Score=181.64 Aligned_cols=174 Identities=17% Similarity=0.227 Sum_probs=114.4
Q ss_pred cHHHHHHhC----CCeEEEEeCCCCCHHH-HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGEL----GYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~----g~~~~v~~~~~~~~~~-~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|+.++|+.+ +.++.+...+....++ -...++|||+++||.|.....+.......++++++|+||||+|||++...
T Consensus 19 Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe 98 (229)
T PRK06186 19 AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALLE 98 (229)
T ss_pred HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHH
Confidence 455666554 4555555432111111 01228999999999999988888876666788999999999999987776
Q ss_pred hCCeeeecCC--cccc---cc--------------ceeeEEcccCCCccccCC-C-C--------ccccccccccccccc
Q 029484 77 FGGKIVRSPL--GVMH---GK--------------SSLVYYDEKGEDGLLAGL-S-N--------PFTAGRYHSLVIEKE 127 (192)
Q Consensus 77 ~gg~v~~~~~--~~~~---~~--------------~~~~~~~~~~~~~l~~~~-~-~--------~~~~~~~H~~~v~~~ 127 (192)
+..++..... ..+. .. ...+.+. +++++..+ + . ++.++..|.+.+
T Consensus 99 ~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~---~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i--- 172 (229)
T PRK06186 99 YARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLR---PGSLIARAYGTLEIEEGYHCRYGVNPEFVAAL--- 172 (229)
T ss_pred HHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEEC---CCCHHHHHhCCCeeeeeccccEEECHHHHHHH---
Confidence 6655533221 0000 00 1122222 22222211 1 1 223444444444
Q ss_pred CCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 029484 128 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 183 (192)
Q Consensus 128 ~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~ 183 (192)
...+++++|+++|+.|+++|.+++|+++|+|||||+.+.+ ...+||+.|++.+.
T Consensus 173 --~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 173 --ESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred --hcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 3589999999999999999999999999999999998765 56799999998865
No 61
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=1e-26 Score=178.84 Aligned_cols=164 Identities=29% Similarity=0.390 Sum_probs=117.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh----HHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~----~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++.++++.+|+++.+++. ..++. ++|+||++|| +.+.+...+ .+.+++ +++++|+||||+|+|+|+.+
T Consensus 15 ~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 15 SVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 578999999999998863 34454 8999999875 333222222 233333 57889999999999999986
Q ss_pred ------------hCCeeeecCCc--cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC
Q 029484 77 ------------FGGKIVRSPLG--VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 142 (192)
Q Consensus 77 ------------~gg~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 142 (192)
+||++.+.+.+ ..+.++..+... ..++++++++ ...++++|++.+. ++++..+++++++
T Consensus 88 ~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~--~~~~l~~~l~-~~~~~~~Hs~~~~----~~~~~~~la~~~~ 160 (200)
T PRK13143 88 SEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV--KDCPLFEGID-GEYVYFVHSYYAY----PDDEDYVVATTDY 160 (200)
T ss_pred hccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc--CCChhhccCC-CcEEEEEeeeeeC----CCCcceEEEEEcC
Confidence 68888775421 123345555544 3677888884 4457789999886 3356889999987
Q ss_pred C-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 143 G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 143 ~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
+ .++++...+ ++||+|||||+. .+.+.+||++|++++
T Consensus 161 ~~~~~~~~~~~--~~~gvQfHPE~~-~~~g~~i~~~f~~~~ 198 (200)
T PRK13143 161 GIEFPAAVCND--NVFGTQFHPEKS-GETGLKILENFVELI 198 (200)
T ss_pred CCEEEEEEEcC--CEEEEeCCCccc-hHHHHHHHHHHHHHH
Confidence 5 455555443 499999999997 568899999999875
No 62
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.94 E-value=2.1e-27 Score=194.66 Aligned_cols=172 Identities=26% Similarity=0.429 Sum_probs=142.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+.+.+|++.+..++++.. .+...+....+.||||+|||-|+++.. .+...+.++ ++||||||+|||+|+..+||+
T Consensus 32 I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~--~vpvLGICYGmQ~i~~~~Gg~ 108 (552)
T KOG1622|consen 32 IDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL--GVPVLGICYGMQLINKLNGGT 108 (552)
T ss_pred HHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc--CCcceeehhHHHHHHHHhCCc
Confidence 568899999999999984 677778777899999999999988654 345666554 599999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcc--cccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF--TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g 158 (192)
|.+.. .++.|... +... ....+|+.+.... .++..|++.+.. .++++++.|+|...+++++.+..++ +||
T Consensus 109 V~~~~-~RE~G~~e-I~v~--~~~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv~a~s~n~~va~i~~e~kk-iyg 180 (552)
T KOG1622|consen 109 VVKGM-VREDGEDE-IEVD--DSVDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKVVAFSGNKPVAGILNELKK-IYG 180 (552)
T ss_pred ccccc-ccCCCCce-EEcC--chhhhhhhhcccceeeeeeccccchhh---ccccceeEEeecCcceeeehhhhhh-hhc
Confidence 99976 35566654 3332 2455888776544 489999999987 6789999999999999999999887 999
Q ss_pred EeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 159 VQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 159 ~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
+|||||...+++|.+++.||+-.+...
T Consensus 181 lqfhpEV~~t~~g~~ll~nFl~~vc~~ 207 (552)
T KOG1622|consen 181 LQFHPEVTLTPNGKELLKNFLFDVCGC 207 (552)
T ss_pred CCCCCcccccCchhHHHHHHHHHHcCC
Confidence 999999999999999999999665543
No 63
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.94 E-value=8e-26 Score=192.38 Aligned_cols=175 Identities=18% Similarity=0.269 Sum_probs=115.3
Q ss_pred cHHHHHHhCCC----eEEEEeCCCCCH------HHHhccCCCeEEECCCCCCCCCcchhHHHHH-HhCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGY----HFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~----~~~v~~~~~~~~------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~-~~~~~~PilGIC~G~ 70 (192)
|+.++|+.+|+ ++.+...+.... +.+. ++||||++||++.....+.. ..++ .+++++|+||||+||
T Consensus 306 Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~--~~DGIIlpGGfG~~~~~g~i-~~i~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 306 SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLK--GVDGILVPGGFGERGIEGKI-LAIRYARENNIPFLGICLGM 382 (533)
T ss_pred HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhh--cCCEEEecCCCCccccccHH-HHHHHHHHCCCcEEEEchHH
Confidence 56677766654 455554432111 1222 79999999999987666543 3333 367899999999999
Q ss_pred HHHHHHhCCeeeecCCc--cccc--------------------------cceeeEEcccCCCccccC-CC---------C
Q 029484 71 QCIGEAFGGKIVRSPLG--VMHG--------------------------KSSLVYYDEKGEDGLLAG-LS---------N 112 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~--~~~~--------------------------~~~~~~~~~~~~~~l~~~-~~---------~ 112 (192)
|+|+.++|+++...... .+.. +.+.+.+. +++++.. ++ +
T Consensus 383 Qll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~---~gS~l~~iyg~~~i~ErhrH 459 (533)
T PRK05380 383 QLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLK---PGTLAAEIYGKEEIYERHRH 459 (533)
T ss_pred HHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEEC---CCChHHHHhCCCceeeeccc
Confidence 99999999998532210 0111 01111111 1122211 11 2
Q ss_pred cccccccccccccccCCCCCCeEEEEEcCC-CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 113 PFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 113 ~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
++.++..|.+.+.. .+++++|+++| +.+++++.+++|+++|+|||||+.+.+ +..+||.+|++++.+.+.
T Consensus 460 ryeVNs~h~qal~~-----~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~~ 531 (533)
T PRK05380 460 RYEVNNKYREQLEK-----AGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENKK 531 (533)
T ss_pred ceecCHHHHHHHhh-----cCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHhh
Confidence 33445555555543 58999999976 499999999999888999999998776 688999999999986554
No 64
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.94 E-value=5.2e-26 Score=193.46 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=117.0
Q ss_pred cHHHHHHhCCC--eEEEEeCCCCCHHHHh------ccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHH
Q 029484 2 TFLKYMGELGY--HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 2 ~l~~~l~~~g~--~~~v~~~~~~~~~~~~------~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l 73 (192)
|+.++|+.+|+ .+.+...+ .+.+++. ..++||||++||++++...+........+++++|+||||+|||+|
T Consensus 307 SI~eAL~~ag~~~~~~V~~~~-i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG~Qll 385 (525)
T TIGR00337 307 SVIEALKHAGAKLDTKVNIKW-IDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLA 385 (525)
T ss_pred HHHHHHHhCccccCCEEEEEE-ecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 67889999887 33333322 2233332 125999999999999876665432222356899999999999999
Q ss_pred HHHhCCeeeecCCccc----cccceeeEE--ccc-------------------CCCccc-cCCC-Ccccccccccccccc
Q 029484 74 GEAFGGKIVRSPLGVM----HGKSSLVYY--DEK-------------------GEDGLL-AGLS-NPFTAGRYHSLVIEK 126 (192)
Q Consensus 74 ~~~~gg~v~~~~~~~~----~~~~~~~~~--~~~-------------------~~~~l~-~~~~-~~~~~~~~H~~~v~~ 126 (192)
+.++|+++..++.... .+..+++.. +.. ..++++ +-++ ......+.|++.|++
T Consensus 386 ~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs 465 (525)
T TIGR00337 386 VIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNN 465 (525)
T ss_pred HHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECH
Confidence 9999998888653211 011222211 000 011111 1111 122344556666653
Q ss_pred c---CCCCCCeEEEEEcCC-CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHH
Q 029484 127 E---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK 180 (192)
Q Consensus 127 ~---~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~ 180 (192)
. .+...+++++|+++| +.++|++.+++|+++|+|||||+.+++ +..+||+.|++
T Consensus 466 ~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 466 EYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred HHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence 2 222378999999988 589999999999888999999999877 67899999986
No 65
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.93 E-value=5.3e-25 Score=167.07 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=102.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHHhCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~~~~~~PilGIC~G~Q~l~~ 75 (192)
|+.++++.+|+++.+++. .+++. ++|+||+||+ +++.+... +.+.+++ ..++|+||||+|||+|++
T Consensus 14 s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~ 85 (192)
T PRK13142 14 NVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYE 85 (192)
T ss_pred HHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhh
Confidence 688999999999999863 36665 7999988765 55433322 2344444 568999999999999999
Q ss_pred Hh-----------CCeeeecCC--ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC
Q 029484 76 AF-----------GGKIVRSPL--GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 142 (192)
Q Consensus 76 ~~-----------gg~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 142 (192)
.. .+++.+.+. ..++.+|+.+.. +.++++ -.+++.|+|.+. ..+....++....
T Consensus 86 ~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~----~~~l~~-----~~~yFVhSy~v~----~~~~v~~~~~yg~ 152 (192)
T PRK13142 86 HSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS----KHPMLN-----QDVYFVHSYQAP----MSENVIAYAQYGA 152 (192)
T ss_pred hcccCCcCccCceeEEEEECCCCCCCCcccccccCC----CCcccc-----cEEEEECCCeEC----CCCCEEEEEECCC
Confidence 64 134444321 123445554321 233332 347899999983 2234444444433
Q ss_pred CceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 143 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 143 ~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
..+.+++.. +++|+|||||++ +..|.+|++||++-
T Consensus 153 ~~~~~v~~~---n~~g~QFHPEkS-~~~G~~ll~nf~~~ 187 (192)
T PRK13142 153 DIPAIVQFN---NYIGIQFHPEKS-GTYGLQILRQAIQG 187 (192)
T ss_pred eEEEEEEcC---CEEEEecCcccC-cHhHHHHHHHHHhc
Confidence 346666533 599999999996 68999999999763
No 66
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.93 E-value=3.4e-25 Score=164.95 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=120.4
Q ss_pred HHHHHhCCCeEEEEeCC--CCC-HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-----hCCCCCEEeeeHhHHHHHH
Q 029484 4 LKYMGELGYHFEVYRND--ELT-VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-----LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~--~~~-~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-----~~~~~PilGIC~G~Q~l~~ 75 (192)
+..|.+-|.....+++. +.| .+++. +|||+||+|+..+.....+|+..+.. ....+||+|||+|||++++
T Consensus 31 vsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiar 108 (245)
T KOG3179|consen 31 VSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIAR 108 (245)
T ss_pred HHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHH
Confidence 45567778877666543 233 33444 79999999999998888788654432 2356999999999999999
Q ss_pred HhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCC
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 154 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~ 154 (192)
+.||+|.+.+.+...+........ ......+|..+|.++.....|.|.+-. +|++++++|+|+++.++++...+
T Consensus 109 a~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle---~PE~a~llasSe~ceve~fs~~~-- 183 (245)
T KOG3179|consen 109 AKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASSEKCEVEMFSIED-- 183 (245)
T ss_pred hhCCccccCCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceec---CCchhhhhccccccceEEEEecc--
Confidence 999999999876443333332222 223455888888999999999999876 77999999999999999999887
Q ss_pred ceEEEeccCCCC
Q 029484 155 HLQGVQFHPESI 166 (192)
Q Consensus 155 ~~~g~QfHPE~~ 166 (192)
+++++|.|||+.
T Consensus 184 ~~l~fQGHPEyn 195 (245)
T KOG3179|consen 184 HLLCFQGHPEYN 195 (245)
T ss_pred eEEEecCCchhh
Confidence 599999999996
No 67
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=190.47 Aligned_cols=171 Identities=23% Similarity=0.410 Sum_probs=144.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|..++|...|+++.|++++ .+.++ .+|||+++++|||+|.......+.+++ ++.++||+|||+|||+|+.+.|++
T Consensus 185 N~IRcL~~RGa~vtVvPw~-~~i~~---~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaGak 260 (1435)
T KOG0370|consen 185 NQIRCLVKRGAEVTVVPWD-YPIAK---EEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAGAK 260 (1435)
T ss_pred HHHHHHHHhCceEEEecCC-ccccc---cccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhCCc
Confidence 6789999999999999974 44333 389999999999999887777666665 455699999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
..+++++ ++|.+.+...... +..+...++|+|+++.+.|+ .+++.+.++ +|+..+++.|..+| ++.+
T Consensus 261 T~KmKyG-NRGhNiP~~~~~t---------Grc~ITSQNHGYAVD~~tLp-~gWk~lFvN~NDgSNEGI~Hss~P-~fSv 328 (1435)
T KOG0370|consen 261 TYKMKYG-NRGHNIPCTCRAT---------GRCFITSQNHGYAVDPATLP-AGWKPLFVNANDGSNEGIMHSSKP-FFSV 328 (1435)
T ss_pred eEEeecc-ccCCCccceeccC---------ceEEEEecCCceeecccccc-CCCchheeecccCCCceEecCCCC-ceee
Confidence 9999986 4777766554322 25577789999999988877 789999887 88999999999988 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 188 (192)
|||||.+.+| +..-+|..|+..+.+.+..
T Consensus 329 QFHPEat~GP~DTeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370|consen 329 QFHPEATPGPHDTEYLFDVFIELVKKSKST 358 (1435)
T ss_pred ecCCcCCCCCcchHHHHHHHHHHHHHHhcC
Confidence 9999999999 8889999999998876554
No 68
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.92 E-value=1.3e-24 Score=165.05 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=108.0
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
.++++..|+++..++. ..++. ++|++|++||+.+..+.. .+.+.+++ ++.++|+||||+|+|+|+.+++
T Consensus 14 ~~~l~~~g~~v~~v~~----~~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~ 87 (183)
T cd01749 14 IRALERLGVEVIEVRT----PEDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE 87 (183)
T ss_pred HHHHHHCCCeEEEECC----HHHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence 3789999999999975 23444 799999999986554321 22344443 5689999999999999999999
Q ss_pred C------------eeeecCCccccccceeeEEcccCCCccccCC-CCcccccccccccccccCCCCCCeEEEEEcCCCce
Q 029484 79 G------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL-SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 145 (192)
Q Consensus 79 g------------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i 145 (192)
+ ++.++.++...+.. ... ..+.+. ++.+.++++|.+.|.. ++++++++|+++++.+
T Consensus 88 ~~~~~~glG~~~~~v~~~~~g~~~g~~-~~~-------l~~~~~~~~~~~~~~~h~~~v~~---~p~~~~~la~~~~~~~ 156 (183)
T cd01749 88 DQGGQPLLGLLDITVRRNAFGRQVDSF-EAD-------LDIPGLGLGPFPAVFIRAPVIEE---VGPGVEVLAEYDGKIV 156 (183)
T ss_pred ccCCCCccCceeEEEEeeccccccceE-EEc-------CCCCcCCCCccEEEEEECcEEEE---cCCCcEEEEecCCEEE
Confidence 8 56655544323321 111 122333 2678899999999976 5689999999876554
Q ss_pred EEEeeCCCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 146 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 146 ~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
+++.. +++|+|||||.+ ...++++.|+
T Consensus 157 -a~~~~---~~~g~qfHPE~~---~~~~~~~~f~ 183 (183)
T cd01749 157 -AVRQG---NVLATSFHPELT---DDTRIHEYFL 183 (183)
T ss_pred -EEEEC---CEEEEEcCCccC---CCcchhhhhC
Confidence 77744 499999999996 3457777764
No 69
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.92 E-value=5.9e-24 Score=161.32 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=107.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+..++|+.+|+++++++. .+++. ++|++||+||+++..+ ...+.+.+++ ++.++|+||||+|+|+|+.+
T Consensus 13 e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 13 EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 456889999999999864 34444 8999999999776522 2234455554 57899999999999999999
Q ss_pred hC-----------CeeeecCCccccccceeeEEcccCCCccccCCC-CcccccccccccccccCCCCCCeEEEEEcCCCc
Q 029484 77 FG-----------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144 (192)
Q Consensus 77 ~g-----------g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~ 144 (192)
+. +++.++.++...+........ +++. +.+...+.|.+.|.. ++++++++|+++++.
T Consensus 87 ~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~--------~~~~~~~~~~~~~h~~~v~~---lp~~~~vla~~~~~~ 155 (184)
T TIGR03800 87 IIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDI--------KGVGDDPITGVFIRAPKIVS---VGNGVEILAKVGNRI 155 (184)
T ss_pred hccCCCCccCcEEEEEEeeccCCccccEEEEeec--------ccCCCCcceEEEEcCCCccc---CCCCeEEEEEeCCee
Confidence 72 466665544433332211111 1111 235666899999986 568999999987755
Q ss_pred eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
.|++.. ++||+|||||++ ...++++.|+
T Consensus 156 -~a~~~~---~~~gvQfHPE~~---~~~~~~~~f~ 183 (184)
T TIGR03800 156 -VAVRQG---NILVSSFHPELT---DDHRVHEYFL 183 (184)
T ss_pred -EEEEeC---CEEEEEeCCccC---CCchHHHHhh
Confidence 566533 499999999996 3348888886
No 70
>PLN02327 CTP synthase
Probab=99.91 E-value=5e-24 Score=181.79 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=109.0
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCeeeecCCcc--c---cccceeeE-EcccC--
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV--M---HGKSSLVY-YDEKG-- 102 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~--~---~~~~~~~~-~~~~~-- 102 (192)
++|||+++||+++....+.........++++|+||||+|||+++.+++.++...+... + ......+. ..+..
T Consensus 362 ~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~ 441 (557)
T PLN02327 362 GADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKT 441 (557)
T ss_pred cCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccc
Confidence 7999999999998877766543333467899999999999999999988877654211 0 11111111 11000
Q ss_pred -----------------CCccccCC-CC--ccccccccccccccc---CCCCCCeEEEEEcCCC-ceEEEeeCCCCceEE
Q 029484 103 -----------------EDGLLAGL-SN--PFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQG 158 (192)
Q Consensus 103 -----------------~~~l~~~~-~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g 158 (192)
++++...+ .. .....+.|+|+|+.+ .+...+++++|+++|+ .+++++.+++|+++|
T Consensus 442 ~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvG 521 (557)
T PLN02327 442 HMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVG 521 (557)
T ss_pred cCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEE
Confidence 11111111 11 133556667888653 3335789999999887 699999999997789
Q ss_pred EeccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 029484 159 VQFHPESIITT-EGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 188 (192)
+|||||+.+.+ +..++|..|++++.+.+.+
T Consensus 522 VQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~ 552 (557)
T PLN02327 522 VQFHPEFKSRPGKPSPLFLGLIAAASGQLDA 552 (557)
T ss_pred EEcCCCCCCCCCCchHHHHHHHHHHHHhHHh
Confidence 99999998776 5689999999998875544
No 71
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.91 E-value=4.6e-24 Score=177.45 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=123.2
Q ss_pred cHHHHHHhCCC----eEEEEeCC--CCCH---HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGY----HFEVYRND--ELTV---EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~----~~~v~~~~--~~~~---~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~ 72 (192)
|+.++|+.+|+ ++.+...+ +... +++.. .+||++++||.|.....+.......+.++++|+||||+|||+
T Consensus 306 Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~ 384 (533)
T COG0504 306 SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQL 384 (533)
T ss_pred HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHH
Confidence 56677776654 44444322 2211 12222 289999999999999899887777788999999999999999
Q ss_pred HHHHhCCeeeecCCcc-----ccccceeeEE-cc-------------------cCCCccccCCC--Cccccccccccccc
Q 029484 73 IGEAFGGKIVRSPLGV-----MHGKSSLVYY-DE-------------------KGEDGLLAGLS--NPFTAGRYHSLVIE 125 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~-----~~~~~~~~~~-~~-------------------~~~~~l~~~~~--~~~~~~~~H~~~v~ 125 (192)
.+..+.-++.-.+... +......+.. .+ -...++...+- +...-.+.|.|+++
T Consensus 385 aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN 464 (533)
T COG0504 385 AVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVN 464 (533)
T ss_pred HHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCcHHHHHhCCCeeeeeccchhhcC
Confidence 9985444333322100 0000000000 00 00111221111 23444566788886
Q ss_pred cc---CCCCCCeEEEEEcCC-CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 126 KE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 126 ~~---~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
.+ .|...++++.++|+| ..++++|..++|+++|+|||||+++.| +..++|..|++++...+.
T Consensus 465 ~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 465 NDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred HHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 43 445578999999987 579999999999999999999999998 789999999999886654
No 72
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.91 E-value=3.7e-23 Score=178.43 Aligned_cols=169 Identities=23% Similarity=0.292 Sum_probs=119.6
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
+++.++++.+|+++.+++. .+++. ++|+||++|| +++.... .+.+.+++ ++.++|+||||+|||+|
T Consensus 20 ~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlL 92 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLL 92 (538)
T ss_pred HHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHH
Confidence 3688999999999988863 34554 8999999775 4433221 13344444 56789999999999999
Q ss_pred HHHh---------C---CeeeecC----CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEE
Q 029484 74 GEAF---------G---GKIVRSP----LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137 (192)
Q Consensus 74 ~~~~---------g---g~v~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 137 (192)
+.+. | |++.+.. ....+.+|+.+... .+++++.+++ ...++++|+|.+.. ++.....+.
T Consensus 93 a~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~--~~spL~~~l~-~~~vy~vHSy~v~~--~p~~~~~v~ 167 (538)
T PLN02617 93 FESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQIT--KDSELLDGVG-GRHVYFVHSYRATP--SDENKDWVL 167 (538)
T ss_pred hhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEec--CCChhHhcCC-CcEEEEEeEEEEEe--cCCCCcEEE
Confidence 9873 2 6666542 12345667777654 3578888885 45688999998753 232333444
Q ss_pred EEcC--CCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 138 AWTE--DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 138 a~s~--~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
++++ ++.+++++.. +++|+|||||++ .+.+.+||++|+..+.+.
T Consensus 168 a~~~~g~~~IaAI~~g---nI~GVQFHPE~s-~~~G~~L~~nFl~~~~~~ 213 (538)
T PLN02617 168 ATCNYGGEFIASVRKG---NVHAVQFHPEKS-GATGLSILRRFLEPKSSA 213 (538)
T ss_pred EEEccCCCcEEEEEeC---CEEEEEcCCccC-chhHHHHHHHHHHhhhhh
Confidence 5443 4579999864 499999999997 478999999999988753
No 73
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.90 E-value=2.2e-23 Score=163.27 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=114.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--------cchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--------~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
.++++++++|+++++++..+. ++. ++|+|||+||+....+ ...+.+.+++ .+.++||+|||.|+|+
T Consensus 16 ~~~~al~~~G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Ql 90 (227)
T TIGR01737 16 DTVYALRLLGVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQI 90 (227)
T ss_pred HHHHHHHHCCCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHH
Confidence 357899999999999976422 233 7999999999753221 1123344443 5688999999999999
Q ss_pred HHHH--hCCeeeecCCccccccceeeEEcccCCCccccCCCCc--cccccccccc---cccc---CCCCCCeEEEEEc--
Q 029484 73 IGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP--FTAGRYHSLV---IEKE---SFPSDALEVTAWT-- 140 (192)
Q Consensus 73 l~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~H~~~---v~~~---~l~~~~~~~~a~s-- 140 (192)
|+.+ ++|++.++........|..+... ..+++++++++.. +.+...|+++ ++.+ +|. ....+..+.
T Consensus 91 La~~GlL~G~l~~n~~~~~~~~~~~~~v~-~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~-~~~~i~~~y~d 168 (227)
T TIGR01737 91 LVEAGLLPGALLPNDSLRFICRWVYLRVE-NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLE-SNDQVVFRYCD 168 (227)
T ss_pred HHHcCCCCCceeecCCCceEEEeEEEEEC-CCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHH-HCCcEEEEEEC
Confidence 9996 89998887644323334444443 3356788887632 3332355433 2221 222 223333332
Q ss_pred ----------CC---CceEEEeeCCCCceEEEeccCCCC-----CCCchHHHHHHHHHH
Q 029484 141 ----------ED---GLIMAARHKKYKHLQGVQFHPESI-----ITTEGKTIVRNFIKM 181 (192)
Q Consensus 141 ----------~~---~~i~ai~~~~~~~~~g~QfHPE~~-----~~~~~~~l~~~f~~~ 181 (192)
++ ..|+++++++++ ++|+|||||+. .+++|..||++|+++
T Consensus 169 ~~g~~~~~~npngs~~~i~~i~~~~~~-~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 169 EDGDVAEEANPNGSVGNIAGIVNERGN-VLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred CCCCCCCCCCCCCCHHHHcccCCCCCC-EEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 22 359999999987 99999999998 467999999999875
No 74
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=5.7e-23 Score=171.69 Aligned_cols=175 Identities=28% Similarity=0.537 Sum_probs=129.5
Q ss_pred CcHHHHHHhC-CCeE-EEEeCCCCCHHHH-hc-c---CCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHH
Q 029484 1 MTFLKYMGEL-GYHF-EVYRNDELTVEEL-KR-K---NPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 1 ~~l~~~l~~~-g~~~-~v~~~~~~~~~~~-~~-~---~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q 71 (192)
||+.+.+... |... .++++ +...++. .. . -+|+||+.+|||+|..+. .....+....+.+||||||+|||
T Consensus 28 fNiy~ll~~~~~vp~V~~vh~-~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQ 106 (767)
T KOG1224|consen 28 FNIYQLLSTINGVPPVVIVHD-EWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQ 106 (767)
T ss_pred hhHHHHHHHhcCCCcEEEEec-cccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhH
Confidence 6888888775 4444 44444 3333332 11 1 399999999999994332 23344444567899999999999
Q ss_pred HHHHHhCCeeeecCCccccccceeeEEcccCCCccccCC----CCcccccccccccccccCCCCCCeEEEEEcCC-C--c
Q 029484 72 CIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL----SNPFTAGRYHSLVIEKESFPSDALEVTAWTED-G--L 144 (192)
Q Consensus 72 ~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~--~ 144 (192)
.|+.+-|+.|...+ ...||....+.+. +..+|.++ +..|.+..+|+-.+++ ++.+-+.+++++.| . .
T Consensus 107 al~l~hGA~v~~~n-~p~HGrvs~i~~~---~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pid~l~il~t~~ddng~i 180 (767)
T KOG1224|consen 107 ALGLVHGAHVVHAN-EPVHGRVSGIEHD---GNILFSGIPSGRNSDFKVVRYHSLIINS--LPIDLLPILWTIYDDNGHI 180 (767)
T ss_pred hHhhhcccceecCC-CcccceeeeEEec---CcEEEccCCCCCcccceeEEeEEEEecC--CchhhhcceeEeecCCceE
Confidence 99999999999766 4568888877765 33455554 4679999999988875 45556777777633 3 5
Q ss_pred eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++.+.+++.| .+|+|||||...++.|.+||.||++...
T Consensus 181 lMsi~~~~fP-hfG~qyHPES~~s~~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 181 LMSIMHSSFP-HFGLQYHPESIASTYGSQLFKNFLDLTV 218 (767)
T ss_pred EEEeeccCCC-ccceeeChHHhhhhhhHHHHHHHHHhhc
Confidence 8899999998 7999999999988899999999998753
No 75
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.87 E-value=4.6e-21 Score=154.40 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=111.3
Q ss_pred HHHHhccCCCeEEECCCCCC--CCCcch-h--HHHHHH--hCCCCCEEeeeHhHHHHHHHhCCeeeecCCccccccceee
Q 029484 24 VEELKRKNPRGVLISPGPGA--PQDSGI-S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 96 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~--~~~~~~-~--~~~~~~--~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~ 96 (192)
.+++...+|||+||+|+|.. .++... | +..+.+ ....+|+||||+|+|+++.++||...........|....
T Consensus 92 ~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~- 170 (302)
T PRK05368 92 FEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEH- 170 (302)
T ss_pred HHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEE-
Confidence 34455568999999999988 666555 4 222222 246899999999999999999996332321223443322
Q ss_pred EEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHH
Q 029484 97 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 175 (192)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~ 175 (192)
... ...++|++++++.|.+..+|...|..+.+ .+++++++|.|+.+.++++..++.. ++++|+|||+. ...|.
T Consensus 171 ~~~-~~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r-~~~vQgHPEYd----~~tL~ 244 (302)
T PRK05368 171 RVL-DPHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKR-EVFVTGHPEYD----ADTLA 244 (302)
T ss_pred EEc-CCCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCC-EEEEECCCCCC----HHHHH
Confidence 222 23678999999999999999888854322 4478999999999999999986654 99999999994 66677
Q ss_pred HHHHHHHH
Q 029484 176 RNFIKMIV 183 (192)
Q Consensus 176 ~~f~~~~~ 183 (192)
+++.+.+.
T Consensus 245 ~EY~RD~~ 252 (302)
T PRK05368 245 QEYFRDLG 252 (302)
T ss_pred HHHHHHHh
Confidence 77766555
No 76
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.86 E-value=8.3e-21 Score=147.83 Aligned_cols=171 Identities=18% Similarity=0.272 Sum_probs=116.1
Q ss_pred HHHHHH-hCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--------cchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 3 FLKYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~-~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--------~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
+.++++ .+|+++..+...+ .++. ++|+|||+||++.... ...+.+.+++ .++++|++|||.|+|+
T Consensus 17 ~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~ql 91 (219)
T PRK03619 17 MARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQI 91 (219)
T ss_pred HHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHH
Confidence 567888 8999998886532 2333 8999999999753221 1223344443 5689999999999999
Q ss_pred HHHH--hCCeeeecCCccccccceeeEEcccCCCccccCCC--Cccccccccccc---ccc---cCCCCCCeEEEEEc--
Q 029484 73 IGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV---IEK---ESFPSDALEVTAWT-- 140 (192)
Q Consensus 73 l~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~---v~~---~~l~~~~~~~~a~s-- 140 (192)
|+++ ++|++.++........|..+.+. ..++++++.+. ..+.+...|+.. ++. +.+...+..++..+
T Consensus 92 La~~GLL~g~l~~n~~~~~~~~~v~v~i~-~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~ 170 (219)
T PRK03619 92 LTEAGLLPGALTRNASLKFICRDVHLRVE-NNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDE 170 (219)
T ss_pred HHHcCCCCCeEEEcCCCcEEEEEEEEEEC-CCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCC
Confidence 9997 99999988755444455555554 34677887773 234344455433 322 13344566655554
Q ss_pred -CCC---ceEEEeeCCCCceEEEeccCCCCCC-----CchHHHHHHHHH
Q 029484 141 -EDG---LIMAARHKKYKHLQGVQFHPESIIT-----TEGKTIVRNFIK 180 (192)
Q Consensus 141 -~~~---~i~ai~~~~~~~~~g~QfHPE~~~~-----~~~~~l~~~f~~ 180 (192)
+++ .|+++...+. +++|+|||||+... .++.+||++|++
T Consensus 171 npngs~~~ia~i~~~~~-~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 171 NPNGSVNDIAGIVNEKG-NVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred CCCCCHHHhcccCCCCC-CEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 555 3777776554 69999999999965 389999999985
No 77
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.83 E-value=1.7e-19 Score=141.64 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=51.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+..++|+.+|+++.+++. .+++. ++|+|||+||.+.... ...+.+.+++ .++++|+||||+|||+|++.
T Consensus 15 e~~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 15 EHIAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred HHHHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 356889999999988864 45665 8999999998654321 1123344444 46799999999999999997
Q ss_pred h
Q 029484 77 F 77 (192)
Q Consensus 77 ~ 77 (192)
.
T Consensus 89 ~ 89 (248)
T PLN02832 89 A 89 (248)
T ss_pred h
Confidence 4
No 78
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.80 E-value=7.4e-19 Score=134.03 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=119.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--cc------hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--SG------ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--~~------~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
.+.+++.+|.+++.++..+.... .++|+|+++||.+.-+- .+ +.++.+++ .++++|+||||.|||+|
T Consensus 19 ~~~A~~~aG~~~~~V~~~d~~~~----~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL 94 (231)
T COG0047 19 MAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQIL 94 (231)
T ss_pred HHHHHHHcCCCceEEEeeecccC----CCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHH
Confidence 35778889999999987533222 17999999999765432 22 23445554 56999999999999999
Q ss_pred HHH--hCCeeeecCCccccccceeeEEcccCCCccccCCC--Cccccccccccc---cccc---CCCCCCeEEEEEc---
Q 029484 74 GEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAWT--- 140 (192)
Q Consensus 74 ~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~s--- 140 (192)
.++ +.|.+.++........|..+.... .++++++.+. +.+.+.-.|+.+ ++.+ +|..++-.++-..
T Consensus 95 ~e~gLlPGal~~N~s~~F~cr~v~l~V~~-~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~ 173 (231)
T COG0047 95 SEAGLLPGALTRNESLRFECRWVYLRVEN-NNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNN 173 (231)
T ss_pred HHcCcCCcceecCCCCceEEEEEEEEEec-CCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCC
Confidence 986 889999988766666666666553 3555666654 456666677533 3221 2222333333222
Q ss_pred --------CCC---ceEEEeeCCCCceEEEeccCCCCC-----CCchHHHHHHHHHHH
Q 029484 141 --------EDG---LIMAARHKKYKHLQGVQFHPESII-----TTEGKTIVRNFIKMI 182 (192)
Q Consensus 141 --------~~~---~i~ai~~~~~~~~~g~QfHPE~~~-----~~~~~~l~~~f~~~~ 182 (192)
+++ .|++|.+.+++ ++|++.||||.. +.|+.+||++.++.+
T Consensus 174 G~~~~~~NPNGS~~~IaGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~ 230 (231)
T COG0047 174 GETEEYANPNGSVNGIAGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKYL 230 (231)
T ss_pred CceeeeeCCCCChhhceeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence 233 39999999976 999999999985 347899999888764
No 79
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.80 E-value=7e-19 Score=131.61 Aligned_cols=151 Identities=13% Similarity=0.221 Sum_probs=104.5
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC----CCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH---
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP----QDSGISLQTVLELGPTVPLFGVCMGLQCIGEA--- 76 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~----~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~--- 76 (192)
.++++.+|.++.+++. .+++. ++|+||+|||++.. .....+.+.+++...++|++|||.|+|+|++.
T Consensus 18 ~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpilGICaG~qlL~~~s~~ 91 (179)
T PRK13526 18 ADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVFGTCAGSIILSKGEGY 91 (179)
T ss_pred HHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcEEEEcHHHHHHHccCCC
Confidence 5678899999887763 45565 89999999986654 11223455565543478999999999999992
Q ss_pred hC---CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 77 FG---GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 77 ~g---g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
+| ++|.++.+++....|..... +.++ .+...+...-.|.+ ..++++++|+-++.++ +++..
T Consensus 92 Lg~idg~V~Rn~~Grq~~sf~~~~~--------~~~~--~~~~vFiRAP~i~~---~~~~v~vla~~~~~~v-~v~q~-- 155 (179)
T PRK13526 92 LNLLDLEVQRNAYGRQVDSFVADIS--------FNDK--NITGVFIRAPKFIV---VGNQVDILSKYQNSPV-LLRQA-- 155 (179)
T ss_pred CCCccEEEEEcCCCCccceeeeecC--------cCCc--eEEEEEEcCceEeE---cCCCcEEEEEECCEEE-EEEEC--
Confidence 44 78888887654443322111 1111 36666777766765 5688999999866444 55544
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+++|+-||||.+ ++.++.+.|++
T Consensus 156 -~~l~~~FHPElt---~d~r~h~~f~~ 178 (179)
T PRK13526 156 -NILVSSFHPELT---QDPTVHEYFLA 178 (179)
T ss_pred -CEEEEEeCCccC---CCchHHHHHhc
Confidence 499999999997 56688888875
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.79 E-value=1.6e-18 Score=137.83 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=115.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC--Ccch----h-----HHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--DSGI----S-----LQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~--~~~~----~-----~~~~~~-~~~~~PilGIC~G 69 (192)
...++++++|+++.+++..+.........++|+|||+||.+..+ ..+. . .+.+++ +++++||||||.|
T Consensus 19 e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG 98 (261)
T PRK01175 19 ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNG 98 (261)
T ss_pred HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHH
Confidence 35788999999999988643211111112899999999964322 1211 1 133343 5789999999999
Q ss_pred HHHHHHH--hCC----------eeeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc--c-ccc----CC
Q 029484 70 LQCIGEA--FGG----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV--I-EKE----SF 129 (192)
Q Consensus 70 ~Q~l~~~--~gg----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~--v-~~~----~l 129 (192)
+|+|+++ +.| ++.++........|..+.... .+++++..+. ..+.+...|+++ + ..+ .|
T Consensus 99 ~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~-~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l 177 (261)
T PRK01175 99 FQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKEN-RKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERL 177 (261)
T ss_pred HHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECC-CCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHH
Confidence 9999985 555 666666555566666665543 4666776654 234445566532 2 111 22
Q ss_pred CCCCeEEEEE------------cCCC---ceEEEeeCCCCceEEEeccCCCCCC-------------CchHHHHHHHHHH
Q 029484 130 PSDALEVTAW------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT-------------TEGKTIVRNFIKM 181 (192)
Q Consensus 130 ~~~~~~~~a~------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~-------------~~~~~l~~~f~~~ 181 (192)
...+..++.. ++++ .|++|.+.+++ ++|++.||||... .+|..||++++++
T Consensus 178 ~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~ 256 (261)
T PRK01175 178 IENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINY 256 (261)
T ss_pred HHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHH
Confidence 3334444333 2222 39999999986 9999999999843 2689999999876
Q ss_pred HH
Q 029484 182 IV 183 (192)
Q Consensus 182 ~~ 183 (192)
++
T Consensus 257 ~~ 258 (261)
T PRK01175 257 LR 258 (261)
T ss_pred HH
Confidence 54
No 81
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.78 E-value=2.1e-18 Score=136.07 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=109.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-------h--hHHHHHH-hCCCCCEEeeeHhHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-------I--SLQTVLE-LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-------~--~~~~~~~-~~~~~PilGIC~G~Q 71 (192)
++.++|+.+|+++++++..+....+....++|+|||+||+....... . ..+.+++ .++++|+||||.|+|
T Consensus 14 ~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q 93 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQ 93 (238)
T ss_pred HHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHH
Confidence 46788999999999998743211111123899999999975432211 1 3344444 568999999999999
Q ss_pred HHHHH--hCCeeeecCCcccccc----ceeeEEcccCCCccccC--CCCccccccccccc---cccc---CCCCCCeEEE
Q 029484 72 CIGEA--FGGKIVRSPLGVMHGK----SSLVYYDEKGEDGLLAG--LSNPFTAGRYHSLV---IEKE---SFPSDALEVT 137 (192)
Q Consensus 72 ~l~~~--~gg~v~~~~~~~~~~~----~~~~~~~~~~~~~l~~~--~~~~~~~~~~H~~~---v~~~---~l~~~~~~~~ 137 (192)
+|+++ +++++...+....... +..+... ..++.+++. .+..+.++..|+++ .+.+ ++...+-.+
T Consensus 94 lL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~-~~~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~- 171 (238)
T cd01740 94 ILVELGLLPGALIRNKGLKFICRWQNRFVTLRVE-NNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA- 171 (238)
T ss_pred HHHHcCCCccccccCCCCceeccccCceEEEEEc-CCCCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-
Confidence 99997 8888877653332222 2333333 235566765 34567788888753 2111 111122111
Q ss_pred EE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCCCC----------chHHHHHH
Q 029484 138 AW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIITT----------EGKTIVRN 177 (192)
Q Consensus 138 a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~----------~~~~l~~~ 177 (192)
.. ++++ .|++|.+++++ ++|++.||||...+ ++..+|++
T Consensus 172 ~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlglMphPer~~~~~q~~~~~~~~~~~~~F~~ 236 (238)
T cd01740 172 QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLGMMPHPERAVEPWQWERLLGGSDGLKLFRN 236 (238)
T ss_pred EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEEEcCChHHcccccccccccCCCccHHHHhh
Confidence 11 2333 39999999986 99999999998655 46666665
No 82
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.77 E-value=1.4e-18 Score=133.21 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=109.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCCcchhHHHHHH-------hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE-------LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~~~~~~~~~~~-------~~~~~PilGIC~G~Q~ 72 (192)
|.++++++.|++|..+.++ .+++.+.. .-++|||++||.....++-+..+.+.. .+...||.|||+||.+
T Consensus 81 SYVK~aEsgGARViPli~n-epEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~ 159 (340)
T KOG1559|consen 81 SYVKLAESGGARVIPLIYN-EPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159 (340)
T ss_pred HHHHHHHcCCceEEEEecC-CcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence 5789999999999999986 45554432 268999999997777777666655542 2467999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcc--cCCCccccCC--------CCcccccccccccccccCCCC-----CCeEEE
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDE--KGEDGLLAGL--------SNPFTAGRYHSLVIEKESFPS-----DALEVT 137 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--------~~~~~~~~~H~~~v~~~~l~~-----~~~~~~ 137 (192)
|.....-.-......-............ +.+..+|..+ .....+++.|.+.+++..+.. .-|.++
T Consensus 160 lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnil 239 (340)
T KOG1559|consen 160 LSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNIL 239 (340)
T ss_pred HHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhhe
Confidence 9986541111111000000111111111 1123344444 344567899999997655432 347788
Q ss_pred EEcCCC----ceEEEeeCCCCceEEEeccCCCCCCC
Q 029484 138 AWTEDG----LIMAARHKKYKHLQGVQFHPESIITT 169 (192)
Q Consensus 138 a~s~~~----~i~ai~~~~~~~~~g~QfHPE~~~~~ 169 (192)
.++.|+ .|..++.+.+| ++|+|||||+...+
T Consensus 240 TT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafE 274 (340)
T KOG1559|consen 240 TTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFE 274 (340)
T ss_pred eeecCCCceEEEEeecceecc-ceeeeecCccCccc
Confidence 877666 38889999998 99999999998644
No 83
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=141.32 Aligned_cols=153 Identities=18% Similarity=0.284 Sum_probs=100.8
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCeeeecCCc-----cccccceeeE-Eccc---
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG-----VMHGKSSLVY-YDEK--- 101 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~-----~~~~~~~~~~-~~~~--- 101 (192)
..|||+++||.|+..-.+.......+.++++|+||||+|||+.+..|.-++.-.... .+......+. .++.
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~ 442 (585)
T KOG2387|consen 363 SADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKT 442 (585)
T ss_pred cCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcc
Confidence 589999999999999999888777778899999999999999988543333222100 0000000000 0000
Q ss_pred ---------C-------CCc----cccCCCCccccccccccccccc---CCCCCCeEEEEEcCCCc-eEEEeeCCCCceE
Q 029484 102 ---------G-------EDG----LLAGLSNPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGL-IMAARHKKYKHLQ 157 (192)
Q Consensus 102 ---------~-------~~~----l~~~~~~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~-i~ai~~~~~~~~~ 157 (192)
. +++ |+.+. +...-..-|.|+|+++ .|...++..++.+.++. .+.++.+++|+++
T Consensus 443 ~mGgtMRLG~R~t~f~~~~s~~~kLYG~~-~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fV 521 (585)
T KOG2387|consen 443 HMGGTMRLGSRRTVFQDKDSKLRKLYGNV-EFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFV 521 (585)
T ss_pred cccceeeecccceeeecCchHHHHHhCCc-hhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCcee
Confidence 0 111 22221 1222335577888654 34557899999997765 8899999999999
Q ss_pred EEeccCCCCCCC-chHHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITT-EGKTIVRNFIKMIVR 184 (192)
Q Consensus 158 g~QfHPE~~~~~-~~~~l~~~f~~~~~~ 184 (192)
|+|||||+.+.+ ...++|-..+.+...
T Consensus 522 g~QfHPE~~srp~kpsp~flGlv~as~~ 549 (585)
T KOG2387|consen 522 GVQFHPEFKSRPDKPSPLFLGLVAASCG 549 (585)
T ss_pred eeccCHHHhcCCCCCCcchhHhHHHHHh
Confidence 999999999887 556666665555443
No 84
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=3.5e-16 Score=115.68 Aligned_cols=157 Identities=21% Similarity=0.360 Sum_probs=99.4
Q ss_pred HHHHHhCC-CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-----CcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-----~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.++.++ +++..++. .+++. .+||+|||||.+... +.+-+.........++|++|.|.|+-+|+...
T Consensus 16 ~~~l~~~~~~e~~~Vk~----~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei 89 (194)
T COG0311 16 LEALEKAGGAEVVEVKR----PEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEI 89 (194)
T ss_pred HHHHHhhcCCceEEEcC----HHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhh
Confidence 35678884 77777764 56776 799999999977641 22323333334678999999999999999743
Q ss_pred CC------------eeeecCCccccccceeeEEcccCCCccccCCCC--cccccccccccccccCCCCCCeEEEEEcCCC
Q 029484 78 GG------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYHSLVIEKESFPSDALEVTAWTEDG 143 (192)
Q Consensus 78 gg------------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~ 143 (192)
-+ +|.++.+++....+.... -++.+.. .+.+.+...-.|.+ ..++++++|+-++.
T Consensus 90 ~~~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~--------di~~~~~~~~~~avFIRAP~I~~---vg~~V~vLa~l~~~ 158 (194)
T COG0311 90 LDGPEQPLLGLLDVTVRRNAFGRQVDSFETEL--------DIEGFGLPFPFPAVFIRAPVIEE---VGDGVEVLATLDGR 158 (194)
T ss_pred cCCCCCcccceEEEEEEccccccccccceeeE--------EeecccCCCcceEEEEEcceeeh---hcCcceEeeeeCCE
Confidence 32 333333333222221110 1111222 24446666666665 44579999988775
Q ss_pred ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 144 ~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
++++ +.. +++|+.||||.+ ++.++.+.|++++.+
T Consensus 159 iVav-~qg---n~LatsFHPELT---~D~r~Heyf~~~v~~ 192 (194)
T COG0311 159 IVAV-KQG---NILATSFHPELT---DDTRLHEYFLDMVLG 192 (194)
T ss_pred EEEE-EeC---CEEEEecCcccc---CCccHHHHHHHHhhc
Confidence 5544 333 499999999997 555888888887764
No 85
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.68 E-value=4.9e-17 Score=121.30 Aligned_cols=159 Identities=23% Similarity=0.377 Sum_probs=96.4
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCC-CCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPT-VPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~-~PilGIC~G~Q~l~~~~ 77 (192)
.+.|+++|.+...++. .+++. ++||+|||||.+.... ...+...+++ ...+ +||+|+|.|+-+|+...
T Consensus 12 ~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v 85 (188)
T PF01174_consen 12 IRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEV 85 (188)
T ss_dssp HHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEE
T ss_pred HHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhh
Confidence 3578899999977764 56666 7999999999765421 1123334444 3455 99999999999999832
Q ss_pred C-----------CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceE
Q 029484 78 G-----------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 146 (192)
Q Consensus 78 g-----------g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ 146 (192)
. -+|.++.+++....+..-. -+..+..++.+.+...-.|.+- ..+++.++++..++.++
T Consensus 86 ~~~~q~~Lg~ldi~V~RNafGrQ~~SFe~~l--------~i~~~~~~~~avFIRAP~I~~v-~~~~~v~vla~~~g~iV- 155 (188)
T PF01174_consen 86 EGQGQPLLGLLDITVRRNAFGRQLDSFEADL--------DIPGLGEPFPAVFIRAPVIEEV-GSPEGVEVLAELDGKIV- 155 (188)
T ss_dssp CSSCCTSS--EEEEEETTTTCSSSCEEEEEE--------EETTTESEEEEEESS--EEEEE---TTTEEEEEEETTEEE-
T ss_pred hhcccccccceeEEEEccccccchhcEEEEE--------EeecCCCcEEEEEcCCcEEEEe-ecccccccccccccceE-
Confidence 2 2555555554333222111 1122224677777777666540 01257888888876445
Q ss_pred EEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 147 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 147 ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++.. +++++-||||.+ .|+.++.+.|++++.
T Consensus 156 av~qg---n~latsFHPELT--~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 156 AVRQG---NILATSFHPELT--DDDTRIHEYFLEMVV 187 (188)
T ss_dssp EEEET---TEEEESS-GGGS--STHCHHHHHHHHHHC
T ss_pred EEEec---CEEEEEeCCccc--CchhHHHHHHHHHhh
Confidence 55533 499999999995 444799999999875
No 86
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.66 E-value=5.8e-16 Score=122.90 Aligned_cols=177 Identities=16% Similarity=0.201 Sum_probs=106.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--h-----------hHHHHHH-hCC-CCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--I-----------SLQTVLE-LGP-TVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~-----------~~~~~~~-~~~-~~PilGIC 67 (192)
++.+++.+|++++.++..+.-..+....++|+|+|+||.+.-+... . ..+.+++ +++ +.|+||||
T Consensus 18 ~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIc 97 (259)
T PF13507_consen 18 TAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGIC 97 (259)
T ss_dssp HHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEEC
T ss_pred HHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEc
Confidence 5788999999999998643211222333899999999977654432 1 2344444 455 99999999
Q ss_pred HhHHHHHHH--hCC----------eeeecCCccccccceeeEEcccCCCccccCCCCccccccccccc---ccc----cC
Q 029484 68 MGLQCIGEA--FGG----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV---IEK----ES 128 (192)
Q Consensus 68 ~G~Q~l~~~--~gg----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~---v~~----~~ 128 (192)
.|||+|.++ +++ ++.++..+.....|..+..........++++ +.+.+.-.|++. +.. +.
T Consensus 98 NGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~s~~~~~~~~-~~~~lPiahgeG~~~~~~~~~l~~ 176 (259)
T PF13507_consen 98 NGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNENSPSIFLRGL-EGIVLPIAHGEGRFYARDEATLEE 176 (259)
T ss_dssp HHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--SSTTCCCTTT-TCEEEEEEESS-EEE-SSHHHHHH
T ss_pred hHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecCCcceecCCC-CEEEEEEecCcceeecCCHHHHHH
Confidence 999999996 777 8888877766777777755444444445555 345555566532 211 12
Q ss_pred CCCCCeEEEEEcCC----------------CceEEEeeCCCCceEEEeccCCCCCCC--------------chHHHHHHH
Q 029484 129 FPSDALEVTAWTED----------------GLIMAARHKKYKHLQGVQFHPESIITT--------------EGKTIVRNF 178 (192)
Q Consensus 129 l~~~~~~~~a~s~~----------------~~i~ai~~~~~~~~~g~QfHPE~~~~~--------------~~~~l~~~f 178 (192)
|...+..++...++ ..|++|++.+++ ++|++.|||+...+ ++.++|++-
T Consensus 177 l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~Gr-vlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~ 255 (259)
T PF13507_consen 177 LEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGR-VLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNA 255 (259)
T ss_dssp HCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSS-EEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHH
T ss_pred HHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCC-EEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHH
Confidence 33344444443322 249999999986 99999999998532 256677776
Q ss_pred HHH
Q 029484 179 IKM 181 (192)
Q Consensus 179 ~~~ 181 (192)
+++
T Consensus 256 ~~w 258 (259)
T PF13507_consen 256 VEW 258 (259)
T ss_dssp HH-
T ss_pred hhc
Confidence 654
No 87
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.65 E-value=6.1e-16 Score=124.13 Aligned_cols=164 Identities=19% Similarity=0.301 Sum_probs=109.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
||..+++.+|+++.-+.. +.++. +.|-+|++| .|+...... +.+-+++ +++++|++|||.|.|.|.
T Consensus 16 si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfPG-VGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF 88 (541)
T KOG0623|consen 16 SIRNALRHLGFSIKDVQT----PGDIL--NADRLIFPG-VGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALF 88 (541)
T ss_pred HHHHHHHhcCceeeeccC----chhhc--cCceEeecC-cccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh
Confidence 577889999999988864 34555 667788875 455432221 2344444 679999999999999998
Q ss_pred H------------HhCCeeeecC---CccccccceeeEEcccCCCccccCCCCccccccccccccccc--CCCCCCeEEE
Q 029484 75 E------------AFGGKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE--SFPSDALEVT 137 (192)
Q Consensus 75 ~------------~~gg~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~--~l~~~~~~~~ 137 (192)
. .+.|.+.+.. ...++.+|+.-... .++.+|...|. -.+++.|+|..... .+.+.+|++
T Consensus 89 ~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~--sd~effg~~p~-~~~YFVHSyl~~ek~~~len~~wki- 164 (541)
T KOG0623|consen 89 DGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVG--SDSEFFGDVPN-RHVYFVHSYLNREKPKSLENKDWKI- 164 (541)
T ss_pred cccccCCCcCcccccccceecccCCCCcCCcccccccccC--CcccccccCCC-ceEEEEeeecccccccCCCCCCceE-
Confidence 7 2334444432 12456667654433 34456665554 45788899854322 345566765
Q ss_pred EEcCCC---ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 138 AWTEDG---LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 138 a~s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
|+...+ .|.++.- ++++++|||||++ ++.|...+++|+.
T Consensus 165 at~kYG~E~Fi~ai~k---nN~~AtQFHPEKS-G~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 165 ATCKYGSESFISAIRK---NNVHATQFHPEKS-GEAGLSVLRRFLH 206 (541)
T ss_pred eeeccCcHHHHHHHhc---CceeeEecccccc-cchhHHHHHHHHh
Confidence 555444 3666652 3699999999997 8899999999998
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.51 E-value=2.3e-13 Score=126.36 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=114.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-------HHHH--hccCCCeEEECCCCCCCCCc---chh----------HHHHHH-hCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-------VEEL--KRKNPRGVLISPGPGAPQDS---GIS----------LQTVLE-LGP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-------~~~~--~~~~~dglii~GG~~~~~~~---~~~----------~~~~~~-~~~ 59 (192)
.+.+++.+|+++..++..+.. .+++ ...++++|+++||.+.-+.. +.| .+.+.+ +++
T Consensus 994 ~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~ 1073 (1239)
T TIGR01857 994 SAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLAR 1073 (1239)
T ss_pred HHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhC
Confidence 467888999999888765422 1222 12389999999998776544 123 222333 468
Q ss_pred CCCEEeeeHhHHHHHHH--hCC-----------eeeecCCccccccceeeEEcccCCCccccCCC--Cccccccccccc-
Q 029484 60 TVPLFGVCMGLQCIGEA--FGG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV- 123 (192)
Q Consensus 60 ~~PilGIC~G~Q~l~~~--~gg-----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~- 123 (192)
+.++||||.|||+|++. +.+ ++.++..+++...|..+.+.. .+++++.++. ..+.+...|+.+
T Consensus 1074 d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~-~~s~~~~~~~~g~~~~ipvaHgEGr 1152 (1239)
T TIGR01857 1074 DGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIAS-TNSPWLSGVSVGDIHAIPVSHGEGR 1152 (1239)
T ss_pred CCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECC-CCChhHhcCCCCCEEEEEeEcCCcc
Confidence 99999999999999996 322 455555455555566665543 4677887664 456777778643
Q ss_pred --cccc---CCCCCCeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCCC--------CchHHH
Q 029484 124 --IEKE---SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT--------TEGKTI 174 (192)
Q Consensus 124 --v~~~---~l~~~~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~--------~~~~~l 174 (192)
.+.+ +|..++...+-+ ++++ .|++|.+.+++ ++|++.||||... .++..|
T Consensus 1153 f~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~i 1231 (1239)
T TIGR01857 1153 FVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHL 1231 (1239)
T ss_pred eecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHH
Confidence 1111 122233333332 2233 39999999986 9999999999842 245889
Q ss_pred HHHHHHH
Q 029484 175 VRNFIKM 181 (192)
Q Consensus 175 ~~~f~~~ 181 (192)
|++.+++
T Consensus 1232 F~~~v~y 1238 (1239)
T TIGR01857 1232 FASGVKY 1238 (1239)
T ss_pred HHHHHhh
Confidence 9988754
No 89
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.38 E-value=2.9e-12 Score=120.50 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=106.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--h-h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--I-S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~-~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+|+.+|+++..++..+.........+|++|+++||.+.-+..+ . | .+.+.+ + .++.++||||
T Consensus 1072 ~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiC 1151 (1310)
T TIGR01735 1072 MAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVC 1151 (1310)
T ss_pred HHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEec
Confidence 4678899999998888654333332223899999999977654432 2 2 222333 3 6789999999
Q ss_pred HhHHHHH-H--HhCCe-----eeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---cccc----CCCC
Q 029484 68 MGLQCIG-E--AFGGK-----IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEKE----SFPS 131 (192)
Q Consensus 68 ~G~Q~l~-~--~~gg~-----v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~~----~l~~ 131 (192)
.|||+|+ + .+++. +.++........|..+.+.. .++.+++++. ..+.++-.|+.. +..+ .+..
T Consensus 1152 NGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~-s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~ 1230 (1310)
T TIGR01735 1152 NGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGE-SPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADA 1230 (1310)
T ss_pred HHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECC-CCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHh
Confidence 9999999 4 24443 66666666666777777664 4677887765 346667777542 2211 1222
Q ss_pred CCeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCC
Q 029484 132 DALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 132 ~~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+...+-. ++++ .|++|...+++ ++|++.||||..
T Consensus 1231 ~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vl~~MpHPEr~~ 1281 (1310)
T TIGR01735 1231 SGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGR-VTIMMPHPERVF 1281 (1310)
T ss_pred CCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCC-EEEEcCCHHHhh
Confidence 33333322 1223 39999999987 999999999985
No 90
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.38 E-value=7e-12 Score=117.44 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=102.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--cch-h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--SGI-S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--~~~-~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+|+.+|+++..++..+.........+++||+++||.+.-+. .+. | .+.+.+ + .++.++||||
T Consensus 1054 ~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGIC 1133 (1307)
T PLN03206 1054 MAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVC 1133 (1307)
T ss_pred HHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEc
Confidence 46789999999988876532222222238999999999865433 332 1 223333 3 4589999999
Q ss_pred HhHHHHHHH--hCCe----------------eeecCCccccccceeeEEcccCCCccccCCC-Ccccccccccccc---c
Q 029484 68 MGLQCIGEA--FGGK----------------IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVI---E 125 (192)
Q Consensus 68 ~G~Q~l~~~--~gg~----------------v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v---~ 125 (192)
.|||+|++. +++. +.++..+.....|..+.+. ..++.++.++. ..+.++-.|++.- .
T Consensus 1134 NGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~-~s~si~l~~~~G~~l~i~vaHgEGr~~~~ 1212 (1307)
T PLN03206 1134 NGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIE-DSPAIMLKGMEGSTLGVWAAHGEGRAYFP 1212 (1307)
T ss_pred HHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEEC-CCCChhhcccCCCEEEEEEEcCCCCeecC
Confidence 999999995 3321 3444444555556666663 35677787665 3466666776431 2
Q ss_pred cc----CCCCCCeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCC
Q 029484 126 KE----SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 126 ~~----~l~~~~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+ .|..++...+-+ ++++ .|++|+..+++ ++|++.||||..
T Consensus 1213 ~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~ 1273 (1307)
T PLN03206 1213 DESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGR-HLAMMPHPERCF 1273 (1307)
T ss_pred CHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCC-EEEEcCCHHHhh
Confidence 11 222233333332 1222 39999999987 999999999985
No 91
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.35 E-value=1e-11 Score=117.09 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=105.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+++.+|+++..++..+.........++++++++||.+.-+..+. | .+.+.+ + .++.++||||
T Consensus 1052 ~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiC 1131 (1290)
T PRK05297 1052 MAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVC 1131 (1290)
T ss_pred HHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEc
Confidence 46789999999988876543322212238999999999776554332 2 223333 3 5789999999
Q ss_pred HhHHHHHHH--h-CC-----eeeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---cccc---CCCCC
Q 029484 68 MGLQCIGEA--F-GG-----KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEKE---SFPSD 132 (192)
Q Consensus 68 ~G~Q~l~~~--~-gg-----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~~---~l~~~ 132 (192)
.|||+|.+. + .+ ++.++..+.....|..+.+.. .+++++.++. ..+.++-.|++. ++.+ .|...
T Consensus 1132 NGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~-~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~ 1210 (1290)
T PRK05297 1132 NGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQE-SPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAK 1210 (1290)
T ss_pred HHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECC-CCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHC
Confidence 999999996 1 12 355555555566666666653 4777887765 346666677633 2211 12223
Q ss_pred CeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCCC
Q 029484 133 ALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT 168 (192)
Q Consensus 133 ~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~ 168 (192)
+...+-. ++++ .|++|.+.+++ ++|++.||||...
T Consensus 1211 ~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vlglMpHPEr~~~ 1261 (1290)
T PRK05297 1211 GLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGR-VTIMMPHPERVFR 1261 (1290)
T ss_pred CcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCC-EEEEcCChHHhcc
Confidence 3332222 2333 39999999987 9999999999853
No 92
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=99.20 E-value=3.7e-11 Score=96.47 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=91.3
Q ss_pred HHHHhccCCCeEEECCCCCCCCCc--chhHHHH---HH--hCCCCCEEeeeHhHHH-HHHHhCCeeeecCCcccccccee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQDS--GISLQTV---LE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSL 95 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~~~--~~~~~~~---~~--~~~~~PilGIC~G~Q~-l~~~~gg~v~~~~~~~~~~~~~~ 95 (192)
.+++....+||+||+|-|--..+. -.+...+ .+ ...-.+.|.||+|.|. |...+|..-...+.+. .|....
T Consensus 91 ~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~Kl-fGVf~~ 169 (298)
T PF04204_consen 91 FDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKL-FGVFEH 169 (298)
T ss_dssp HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEE-EEEEEE
T ss_pred HHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcc-eeceee
Confidence 344455589999999987764332 2332322 22 2456899999999999 6777887777766332 444332
Q ss_pred eEEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHH
Q 029484 96 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174 (192)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l 174 (192)
... ...++|++++++.|.+.++..-.+..+.+ ...+++++|.|++.-+..+..+++. .+=+|.|||+. ...|
T Consensus 170 ~~~--~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EYd----~~TL 242 (298)
T PF04204_consen 170 RVL--DPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEYD----ADTL 242 (298)
T ss_dssp EES---SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT------TTHH
T ss_pred ecc--CCCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCccC----hhHH
Confidence 222 24789999999888887777666655444 4578999999998888888888876 88899999994 5556
Q ss_pred HHHHHHHHHH
Q 029484 175 VRNFIKMIVR 184 (192)
Q Consensus 175 ~~~f~~~~~~ 184 (192)
-+++.+.+.+
T Consensus 243 ~~EY~RD~~~ 252 (298)
T PF04204_consen 243 AKEYRRDLAK 252 (298)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 6666655543
No 93
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.15 E-value=6.5e-11 Score=88.74 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=73.1
Q ss_pred HhccCCCeEEECCCCCCCCCcc--hhHHHH---HH--hCCCCCEEeeeHhHHHHHHHhCCee-eecCCccccccceeeEE
Q 029484 27 LKRKNPRGVLISPGPGAPQDSG--ISLQTV---LE--LGPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSLVYY 98 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~--~~~~~~---~~--~~~~~PilGIC~G~Q~l~~~~gg~v-~~~~~~~~~~~~~~~~~ 98 (192)
+...+|||+||+|.|-...+.. .+.+.+ .+ .....|+||||+|+|....+++|.. ..++.+. .|.......
T Consensus 58 i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~-~Gvf~~~~~ 136 (175)
T cd03131 58 IRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKI-FGVFPHTIL 136 (175)
T ss_pred ccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCce-EEEEEeeec
Confidence 4455899999999988654332 222222 22 2577999999999999999999886 4455333 443332222
Q ss_pred cccCCCccccCCCCcccccccccccccccCC-CCCCeEEEE
Q 029484 99 DEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTA 138 (192)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a 138 (192)
. .++|++++++.|.+..+|...|..+.+ ..+++++++
T Consensus 137 ~---~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 137 E---PHPLLRGLDDGFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred C---CCccccCCCCceeecCcccccCCHHHHhhCCCCEEcc
Confidence 2 689999999999999999888875433 234555553
No 94
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=99.12 E-value=7.1e-10 Score=88.60 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=102.4
Q ss_pred HHHHhccCCCeEEECCCCCCCC--CcchhHHHH---HH--hCCCCCEEeeeHhHHH-HHHHhCCeeeecCCcccccccee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQ--DSGISLQTV---LE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSL 95 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~---~~--~~~~~PilGIC~G~Q~-l~~~~gg~v~~~~~~~~~~~~~~ 95 (192)
.+++...++||+||+|-|---. +.-.+...+ .+ -..-...|.||+|.|. |...+|-.-...+.+. .|....
T Consensus 92 f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~Kl-fGVf~h 170 (300)
T TIGR01001 92 FEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKL-SGVYKH 170 (300)
T ss_pred HHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCce-EEeecC
Confidence 4556556899999999877543 332332332 22 2466889999999999 5555776655555332 443332
Q ss_pred eEEcccCCCccccCCCCcccccccccccccccCCCC-CCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHH
Q 029484 96 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPS-DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174 (192)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~-~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l 174 (192)
... ..++|++++++.|.+.++..-.+..+.+.. +++++++.|++.-+..+..+++. -+=++.|||+ +...|
T Consensus 171 ~~~---~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EY----d~~TL 242 (300)
T TIGR01001 171 DIA---PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEY----DAYTL 242 (300)
T ss_pred ccC---CCCccccCCCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCcc----ChhHH
Confidence 222 368899999988888777655565443322 67999999988887788888875 6669999999 45666
Q ss_pred HHHHHHHHH
Q 029484 175 VRNFIKMIV 183 (192)
Q Consensus 175 ~~~f~~~~~ 183 (192)
-+++.+.+.
T Consensus 243 ~~EY~RD~~ 251 (300)
T TIGR01001 243 HQEYVRDIG 251 (300)
T ss_pred HHHHHHHHH
Confidence 676665554
No 95
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=99.11 E-value=7.1e-10 Score=81.05 Aligned_cols=65 Identities=14% Similarity=0.284 Sum_probs=44.2
Q ss_pred CCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hC-CCCCEEeeeHhHHHHHHHhCC
Q 029484 11 GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LG-PTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 11 g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~-~~~PilGIC~G~Q~l~~~~gg 79 (192)
++++++.++ ...+++. ++|++||+||.+...- ...+...+.+ .. ..+|++|.|.||-.|+..+.+
T Consensus 40 ~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 40 EIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred eEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence 566777776 3466777 8999999999775421 1112333444 23 459999999999999985543
No 96
>PHA03366 FGAM-synthase; Provisional
Probab=99.09 E-value=1.2e-09 Score=103.28 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=101.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+|+.+|+++..++..+...... ..+|+||+++||.+.-+..+. | .+.+.+ + .++.++||||
T Consensus 1045 ~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiC 1123 (1304)
T PHA03366 1045 LLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCG 1123 (1304)
T ss_pred HHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeC
Confidence 4678899999999888755433332 238999999999887654432 2 233333 3 4689999999
Q ss_pred H-hHHHHHHH--h-----------------CCeeeecCCccccccceeeEEcccCCCccccCCCC-ccccccccccc---
Q 029484 68 M-GLQCIGEA--F-----------------GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV--- 123 (192)
Q Consensus 68 ~-G~Q~l~~~--~-----------------gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~--- 123 (192)
. |||+|++. + ..++.++..+.....|..+.+....++.+++++.. .+.++..|.+.
T Consensus 1124 N~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs~lP~w~~g~~~~~~ 1203 (1304)
T PHA03366 1124 ELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVLPCWAQGTHLGFR 1203 (1304)
T ss_pred cHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeeceEEEeCCCCCCccccccCCCCCCEEeCCCccccc
Confidence 8 99999984 3 23455555555566676666665356667766642 23333222220
Q ss_pred cccc----CCCCCCeEEEEE----------------cCC--CceEEEeeCCCCceEEEeccCCCCC
Q 029484 124 IEKE----SFPSDALEVTAW----------------TED--GLIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 124 v~~~----~l~~~~~~~~a~----------------s~~--~~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
...+ .+...+...+-. +++ ..|++|+..+++ ++|+++|||+..
T Consensus 1204 ~~~~~~~~~l~~~~~ia~~Y~d~~~~~g~~t~~yP~NPNGS~~IaGi~s~dGR-~l~mMphPer~~ 1268 (1304)
T PHA03366 1204 YPNDGMEYILRNSGQIAATFHGADVDPGNPARHYPRNPTGNSNVAGLCSADGR-HLALLFDPSLSF 1268 (1304)
T ss_pred cCCHHHHHHHHhCCcEEEEEeCCCCCcCccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHhh
Confidence 1110 111122222111 111 349999999987 999999999985
No 97
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.05 E-value=1.6e-09 Score=93.01 Aligned_cols=70 Identities=19% Similarity=0.377 Sum_probs=48.1
Q ss_pred cHHHHHHhCCC-eEEEEeCCCCCHHHHhccCCCeEEECCCCCC-CCCc-chhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dglii~GG~~~-~~~~-~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
|..+.++.+|. .+.++... +.+++. ++|+|||+||.-. ..+. ..+.+.+++. ++||||||.|||||++..
T Consensus 10 sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 10 GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYIIGICSGFQILSEKI 82 (476)
T ss_pred hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEEEEcHHHHhccccc
Confidence 66788888886 67776542 356666 8999999997421 1111 1233334444 899999999999999975
No 98
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.05 E-value=2.7e-09 Score=82.01 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=47.8
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC-----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~-----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|+++|++++++... ..+++. ++|+|||+||...... ...+.+.+++ .++++||+|||.|+|+|.+.+
T Consensus 17 ~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 17 LELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 46788999999988641 112333 5999999998433210 0112344444 567899999999999999964
No 99
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.04 E-value=2.4e-09 Score=100.73 Aligned_cols=162 Identities=13% Similarity=0.178 Sum_probs=97.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+++.+|+++..++..+...... ..+++||+++||.+.-+..+. | .+.+.+ + .++.++||||
T Consensus 946 ~~~Af~~aGf~~~~v~~~dl~~~~~-l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiC 1024 (1202)
T TIGR01739 946 LLAALTNAGFDPRIVSITELKKTDF-LDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFG 1024 (1202)
T ss_pred HHHHHHHcCCceEEEEeccCCCCCc-hhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeC
Confidence 5678999999999888755332221 128999999998776543321 2 223333 3 4689999999
Q ss_pred H-hHHHHHHH--hC-----------------CeeeecCCccccccceeeEEcccCCCccccCCCCc-ccccccccc----
Q 029484 68 M-GLQCIGEA--FG-----------------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSL---- 122 (192)
Q Consensus 68 ~-G~Q~l~~~--~g-----------------g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~---- 122 (192)
. |||+|+.. ++ .++.++..+.....|..+.+....++.+++++... +.++. |+.
T Consensus 1025 N~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~~lp~wv-~g~~~g~ 1103 (1202)
T TIGR01739 1025 ELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIPETTKSVFLRPLRGSVLPCWA-QGTHLGL 1103 (1202)
T ss_pred cHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEeeeEEEeCCCCCChhhhhcCCCEeccce-EeccCCc
Confidence 8 99999995 21 12333444445555666666543566677766533 33332 322
Q ss_pred ccccc----CCCCCCeEEEEE----------------cCC--CceEEEeeCCCCceEEEeccCCCCC
Q 029484 123 VIEKE----SFPSDALEVTAW----------------TED--GLIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 123 ~v~~~----~l~~~~~~~~a~----------------s~~--~~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+..+ ++...+...+-. +++ ..|++|+..+++ ++|+++|||+..
T Consensus 1104 ~~~~~~~~~~l~~~g~va~~Y~d~~~~~g~~a~~yP~NPNGS~~IAGi~s~dGR-~l~lMphPer~~ 1169 (1202)
T TIGR01739 1104 YHPDDGVEEELENSGQIASTFHGNSPSSGLPATNYPRNPSGGSNVAGLCSADGR-HLALLIDPSLSF 1169 (1202)
T ss_pred EECCHHHHHHHHhCCeEEEEEeCCCCCCCccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHhh
Confidence 22111 122222222221 111 259999999987 999999999985
No 100
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.97 E-value=9.6e-10 Score=84.20 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=51.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-----chhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
++.++++..|+++++++..+ + +. ++|+|||+||.....+. ..+.+.+++ .++++||||||.|+|+|++
T Consensus 14 ~l~~~~~~~G~~~~~~~~~~-~---~~--~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~ 87 (194)
T cd01750 14 DLDPLAREPGVDVRYVEVPE-G---LG--DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGK 87 (194)
T ss_pred HHHHHHhcCCceEEEEeCCC-C---CC--CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhh
Confidence 57788899999999998642 1 23 78999999997332211 113334444 5689999999999999999
Q ss_pred HhC
Q 029484 76 AFG 78 (192)
Q Consensus 76 ~~g 78 (192)
.+.
T Consensus 88 ~~~ 90 (194)
T cd01750 88 YIV 90 (194)
T ss_pred hcc
Confidence 873
No 101
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.61 E-value=4.2e-07 Score=78.10 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.2
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|++.|+++..++.- ..+++. ++|+|+|+||.....+. ..+.+.+++ .+++.||+|+|.|+|+|++.+
T Consensus 263 ~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 263 LDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 45688899999888651 112333 78999999997533221 113344544 568899999999999999986
No 102
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.60 E-value=2.1e-06 Score=73.92 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=49.5
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|++.|+++..++.- ..+++. ++|+|||+||..... ....+.+.+++ .++++||+|||.|+|+|.+.+
T Consensus 264 ~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 264 LELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 36688899999888641 122333 899999999964321 11223455554 568899999999999999986
No 103
>PRK00784 cobyric acid synthase; Provisional
Probab=98.39 E-value=4e-07 Score=79.06 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=48.4
Q ss_pred HHHHh-CCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 5 KYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 5 ~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+.|+. +|+++++++. .+++. ++|+|||+||.....+ .. +.+.+++ +++++||||||.|+|+|++.
T Consensus 269 ~~l~~~~g~~v~~~s~----~~~l~--~~d~lilpGg~~~~~~-~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 269 DPLRAEPGVDVRYVRP----GEPLP--DADLVILPGSKNTIAD-LAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHhhcCCCeEEEECC----ccccc--cCCEEEECCccchHHH-HHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 45665 8999999864 23444 7899999999744332 22 3344544 56899999999999999998
Q ss_pred h
Q 029484 77 F 77 (192)
Q Consensus 77 ~ 77 (192)
+
T Consensus 342 ~ 342 (488)
T PRK00784 342 I 342 (488)
T ss_pred c
Confidence 7
No 104
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=98.36 E-value=1.8e-06 Score=77.49 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc---hh----------HHHHHHhCC--CCCEEeeeH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---IS----------LQTVLELGP--TVPLFGVCM 68 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~---~~----------~~~~~~~~~--~~PilGIC~ 68 (192)
+-.+..+|++..=+...+.-.......+|.||+..||.+..+-.+ -| +..+.++.+ +.=-||||.
T Consensus 1076 a~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCN 1155 (1320)
T KOG1907|consen 1076 AAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICN 1155 (1320)
T ss_pred HHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeeccc
Confidence 345677888776665532222222223799999999987653221 12 333444433 333789999
Q ss_pred hHHHHHHH--hCCeee--------ecCCccccccceeeEEcccCCCccccCCC-Ccccccccccccc---cc----cCCC
Q 029484 69 GLQCIGEA--FGGKIV--------RSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVI---EK----ESFP 130 (192)
Q Consensus 69 G~Q~l~~~--~gg~v~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v---~~----~~l~ 130 (192)
|+|+|++. .|-.+. .+..++....+..+.+. ...+-+++++. ..+-++..|+.+- .. +.|.
T Consensus 1156 GCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~-~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~ 1234 (1320)
T KOG1907|consen 1156 GCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIE-SNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLK 1234 (1320)
T ss_pred HhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeC-CCchhhhccccCCceeeEEEecccceecCcHHHHHHHh
Confidence 99999995 222222 22333334445555554 23445666665 3566777786442 11 1233
Q ss_pred CCCeEEEEEcCC-------------C---ceEEEeeCCCCceEEEeccCCCCC
Q 029484 131 SDALEVTAWTED-------------G---LIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 131 ~~~~~~~a~s~~-------------~---~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+++..+...+| + -|++|+..++. +++++.||||..
T Consensus 1235 ~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGR-hLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1235 KEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGR-HLAMMPHPERVF 1286 (1320)
T ss_pred hcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCC-eeeccCCchhee
Confidence 455555544322 2 39999999987 999999999984
No 105
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.36 E-value=1e-06 Score=59.35 Aligned_cols=72 Identities=28% Similarity=0.506 Sum_probs=52.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHH-HhccCCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~-~~~~~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
++.+.++..++++.+++........ ....++|+++++||....... ....+.+++ .++++|++|+|.|+|++
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 4677889999999999875332110 112389999999998776544 344455554 56789999999999999
No 106
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.35 E-value=8.2e-06 Score=69.63 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=46.9
Q ss_pred HHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 5 ~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.|+++ ++++.+.. ...+++. ++|+|+|+||.....+. ....+.+++ .+++.||+|+|.|+|+|++.+
T Consensus 253 ~~L~~~-aelv~fSP--l~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 253 ERLRER-ADVVTFSP--VAGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred HHHHhc-CcEEEEcC--CCCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 567888 77777654 2223344 78999999997543321 011244444 578999999999999999976
No 107
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=98.33 E-value=3.2e-06 Score=66.05 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=87.6
Q ss_pred HHHHhccCCCeEEECCCCCCCCC--cchhHHHHH---H-hC-CCCCEEeeeHhHHHHHHH-hCCeeeecCCcccccccee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQD--SGISLQTVL---E-LG-PTVPLFGVCMGLQCIGEA-FGGKIVRSPLGVMHGKSSL 95 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~~--~~~~~~~~~---~-~~-~~~PilGIC~G~Q~l~~~-~gg~v~~~~~~~~~~~~~~ 95 (192)
.+++...+|||+||+|-|--..+ .-.+.+.+. + .. .---.|-||+|.|.--.+ +|-.=..++... .|....
T Consensus 92 feeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl-~GVy~h 170 (307)
T COG1897 92 FEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKL-SGVYKH 170 (307)
T ss_pred HHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhh-hceeec
Confidence 45566668999999998775433 223323332 2 12 334689999999987776 443333333222 333222
Q ss_pred eEEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 96 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
-.. ...+.|+.++.+.|.+..+..-.+..+.+ .-+.+++++.|+..-+.-+..++++ -+=+-.|||+.
T Consensus 171 ~~l--~p~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD 239 (307)
T COG1897 171 DIL--SPHSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYD 239 (307)
T ss_pred ccc--CccchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchh
Confidence 212 12566888898888777665544543322 2256999999988888888888876 56677899996
No 108
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.31 E-value=1.9e-06 Score=63.79 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCeEEECCCCCCCCCcc-----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 31 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~-----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
++|+|+|+||.-...+.. .+.+.|++ .+++.||+|||.|+|+|.+.+-
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 899999999855443321 23455554 6789999999999999999874
No 109
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.21 E-value=3.7e-06 Score=54.12 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=51.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHH-HHhccCCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~-~~~~~~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
++.+.++..++.+.++........ .....++|++|++||+...... ....+.+.+ ..++.|++|+|.|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 467788999999999987533221 1123389999999998877554 344455543 56789999999999874
No 110
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.21 E-value=1e-05 Score=63.04 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHhCCCeEEEEeCCC--------------------------------CCHHHHhccCCCeEEECCCCCCCC---C--
Q 029484 4 LKYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAPQ---D-- 46 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~~~~~~dglii~GG~~~~~---~-- 46 (192)
...|+++|+++.++.... .+.+++...+||+|+|+||.+... +
T Consensus 26 ~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~~ 105 (217)
T PRK11780 26 LLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNFA 105 (217)
T ss_pred HHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhhc
Confidence 467888999988875321 122333334899999999976431 1
Q ss_pred --------cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 47 --------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 47 --------~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.....+.+++ .++++||.+||.|-++|+.++
T Consensus 106 ~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 106 VKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred ccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 2234455554 578999999999999999876
No 111
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.12 E-value=1.2e-05 Score=62.29 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=52.1
Q ss_pred HHHHHhCCCeEEEEeCCC--------------------------------CCHHHHhccCCCeEEECCCCCCC---CC--
Q 029484 4 LKYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD-- 46 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~~~~~~dglii~GG~~~~---~~-- 46 (192)
.+.|+++|+++.+..... .+.+++...+||+|+|+||.+.. .+
T Consensus 23 ~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~~ 102 (213)
T cd03133 23 LLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDFA 102 (213)
T ss_pred HHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhhc
Confidence 567899999998876421 22334333479999999996532 11
Q ss_pred --------cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 47 --------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 47 --------~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
...+.+.+++ .++++||.+||.|-++|+.+.+
T Consensus 103 ~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 103 VKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred ccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 2234445554 5789999999999999999764
No 112
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.97 E-value=2.6e-05 Score=58.79 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+++||++... ......+.+++ +.+++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999975321 12334445554 57899999999999999996
No 113
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.93 E-value=4e-05 Score=60.26 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=35.9
Q ss_pred cCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+||+|+|+||.+...+ ...+.+.+++ .++++||.+||.|-++|..+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 37999999999764332 2334455555 57899999999999999987
No 114
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.93 E-value=0.00014 Score=55.92 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC----Cc-chhHHHH-HHhCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DS-GISLQTV-LELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~----~~-~~~~~~~-~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.+..+.+|+.+++++....+ ......+|.+++.||..... +. ..--..+ ..++.++|+|.||.|+|+|-..
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~d--~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLTD--TFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ehHHHHhcCCceEEEEeecCC--CCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 456778899999998874322 22223678777777633211 11 1111122 2468999999999999999885
No 115
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.89 E-value=1.1e-05 Score=69.85 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=34.5
Q ss_pred CCCeEEECCCCCCCCCcc-----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 31 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~-----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
++|+|+|+||.....+.. .+.+.+++ .+++.||+|||.|||+|.+.+
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 789999999964333211 13344554 568999999999999999975
No 116
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.87 E-value=4.6e-05 Score=56.49 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=48.6
Q ss_pred HHHHHHhCCCeEEEEeCCC--------------CCHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilG 65 (192)
..+.|+.+|+++.++.... .+.+++...++|+|+++||++... ......+.+++ ..+++|+.|
T Consensus 18 ~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ 97 (166)
T TIGR01382 18 PLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAA 97 (166)
T ss_pred HHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEE
Confidence 3566777888887775321 122222222699999999976321 22334455554 468899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||.|.++|+.+
T Consensus 98 ic~G~~~La~a 108 (166)
T TIGR01382 98 ICHGPQLLISA 108 (166)
T ss_pred EChHHHHHHhc
Confidence 99999999985
No 117
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.81 E-value=2.8e-05 Score=60.33 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=48.7
Q ss_pred cHHHHHHhC-CCeEEEEeCCCC-C-HHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHH
Q 029484 2 TFLKYMGEL-GYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 2 ~l~~~l~~~-g~~~~v~~~~~~-~-~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q 71 (192)
++.++++.+ |++++.+...+. . .+.+. +.|+|+++|| +...... +.+.+++ .++++|++|||.|+|
T Consensus 50 ~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 50 RFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSN 125 (212)
T ss_pred HHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHH
Confidence 456788999 999988864221 1 23344 8999999996 4322211 2233443 568999999999999
Q ss_pred HHHHH
Q 029484 72 CIGEA 76 (192)
Q Consensus 72 ~l~~~ 76 (192)
++...
T Consensus 126 i~~~~ 130 (212)
T cd03146 126 CWFPS 130 (212)
T ss_pred hhCCC
Confidence 99985
No 118
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.80 E-value=9e-05 Score=54.87 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHhCCCeEEEEeCC-CC---------------CHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~---------------~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~Pi 63 (192)
+.+.|+.+|+++.++..+ .. +.++....++|+|+++||+.... ....+++.+++ ..+++||
T Consensus 18 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i 97 (165)
T cd03134 18 PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPV 97 (165)
T ss_pred HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeE
Confidence 355678888888887543 11 12222222689999999974321 22344555554 5789999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.|||.|.++|+++
T Consensus 98 ~~ic~G~~~La~a 110 (165)
T cd03134 98 AAICHGPWVLISA 110 (165)
T ss_pred EEEchHHHHHHhc
Confidence 9999999999985
No 119
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.72 E-value=3.8e-05 Score=65.69 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=39.8
Q ss_pred CCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch-----hHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 11 GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 11 g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~-----~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
++++.+++. ..++. ++|.+||+|......|... +.+.+.+ ...+.||+|||.|||||...+
T Consensus 276 ~v~v~~v~~----~~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKP----GSDLR--DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEecc----CCCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 677777764 23344 5788888876444433221 2334444 456999999999999998853
No 120
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.64 E-value=2.7e-05 Score=54.38 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCeEEECCCCCCCCCcc---hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 31 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~---~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
++|.||+|||........ .-.+.+++ +++++|+||||+|.-+.
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence 689999999543321110 00333444 56889999999998776
No 121
>PRK04155 chaperone protein HchA; Provisional
Probab=97.59 E-value=0.00033 Score=56.79 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=35.3
Q ss_pred ccCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 29 RKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 29 ~~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
..+||+|+|+||.+...+ ...+.+.++. .++++||.+||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 348999999999775432 2234444544 57899999999999887764
No 122
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=97.58 E-value=0.0002 Score=51.72 Aligned_cols=74 Identities=19% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~Pil 64 (192)
+.+.|+.+|+++.++..+..+ .++....+||.|+|+||.+... ....+.+.+++ ..+++||.
T Consensus 20 ~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~ 99 (142)
T cd03132 20 LKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIG 99 (142)
T ss_pred HHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEE
Confidence 467788889998888643211 1122222589999999876532 33445555655 56889999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|-.+|+.+
T Consensus 100 aic~G~~~La~a 111 (142)
T cd03132 100 AVGEGSDLLEAA 111 (142)
T ss_pred EcCchHHHHHHc
Confidence 999999999985
No 123
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.47 E-value=0.00044 Score=53.99 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+|+||.+... +.....+.+++ .+++++|.+||.|-.+|+.+
T Consensus 90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 699999999976432 23345555554 56889999999999999986
No 124
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.46 E-value=0.00071 Score=53.28 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=34.8
Q ss_pred cCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+||+|+++||.+...+ ...+.+.+++ .++++||-.||.|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 37999999999665433 2234455554 57899999999999987765
No 125
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.43 E-value=0.00049 Score=51.37 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCC-CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~-~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.++|+||.... .....+.+.+++ ..++++|.+||-|.++|+.+
T Consensus 60 ~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 60 DYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 79999999996532 222334555554 46789999999999999996
No 126
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=97.39 E-value=0.00084 Score=49.36 Aligned_cols=74 Identities=11% Similarity=0.173 Sum_probs=48.4
Q ss_pred HHHHHHhCCCeEEEEeCCC---------------CCHHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~---------------~~~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+. .+.++....+||.|+|+||++.. .+...+.+.+++ ..++++|
T Consensus 17 ~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i 96 (163)
T cd03135 17 PVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLI 96 (163)
T ss_pred HHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEE
Confidence 3556677777777664321 11222222379999999997322 223345555554 4688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||-|..+|+.+
T Consensus 97 ~~ic~g~~~La~a 109 (163)
T cd03135 97 AAICAAPAVLAKA 109 (163)
T ss_pred EEEchhHHHHHHc
Confidence 9999999999997
No 127
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=97.37 E-value=0.00048 Score=52.18 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCC-CCCCCCc--chhHHHHHH-hCCCCC
Q 029484 4 LKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPG-PGAPQDS--GISLQTVLE-LGPTVP 62 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG-~~~~~~~--~~~~~~~~~-~~~~~P 62 (192)
.+.|+.+|..+.++..... ..+++...+||+|+++|| .+..... ..+++.+++ .+.++|
T Consensus 22 ~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~ 101 (188)
T COG0693 22 YDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKP 101 (188)
T ss_pred HHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCE
Confidence 4567777777666644211 111112237999999999 5554333 345566665 568999
Q ss_pred EEeeeHhHHHHHHHh
Q 029484 63 LFGVCMGLQCIGEAF 77 (192)
Q Consensus 63 ilGIC~G~Q~l~~~~ 77 (192)
|.+||.|-++|+.+-
T Consensus 102 vaaIC~g~~~L~~ag 116 (188)
T COG0693 102 VAAICHGPAVLAAAG 116 (188)
T ss_pred EEEEChhHHHHhccc
Confidence 999999999999873
No 128
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.35 E-value=0.00071 Score=51.08 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|+++||.+.. .+...+.+.+++ ..++++|.+||.|-++|+++
T Consensus 64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 79999999996654 233445566665 46789999999999999996
No 129
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.25 E-value=0.00062 Score=53.56 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=49.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHH-HhCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVL-ELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~-~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
..+.++..|+++..++..+...+.+. +.|+|+++||.....- ...+.+.++ .+++++|++|+|.|.-+++...
T Consensus 53 ~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 53 VAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 45678889999888875432233344 8899999998543211 111233343 3678999999999998888865
Q ss_pred C
Q 029484 78 G 78 (192)
Q Consensus 78 g 78 (192)
.
T Consensus 131 ~ 131 (233)
T PRK05282 131 R 131 (233)
T ss_pred e
Confidence 4
No 130
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=97.25 E-value=0.014 Score=48.93 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
+++.+|++||...++.. +.-.+.|++ +.+|--.||||.|.-.-+.
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 78999999998776543 223556666 5779999999999988776
No 131
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.18 E-value=0.0001 Score=53.74 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=39.5
Q ss_pred CCHHHHhccCCCeEEECCCCCCC---C-CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 22 LTVEELKRKNPRGVLISPGPGAP---Q-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 22 ~~~~~~~~~~~dglii~GG~~~~---~-~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.+++...+||+|||+||.+.. . +...+.+.+++ .+.++||.+||.|-.+|+.+
T Consensus 28 ~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 28 KTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 44667766689999999998843 2 22445566665 46799999999999999886
No 132
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=97.13 E-value=0.003 Score=48.14 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHhCCCeEEEEeCC-----------------CCCHHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCC
Q 029484 4 LKYMGELGYHFEVYRND-----------------ELTVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~-----------------~~~~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~P 62 (192)
.+.|+.+|+++.+.... +.+.+++...++|.|+|+||.+... +...+.+.+++ .+++++
T Consensus 22 ~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 101 (196)
T PRK11574 22 IDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRI 101 (196)
T ss_pred HHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCE
Confidence 45677777776665431 1122333223699999999865432 22335555554 468999
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|..+|...
T Consensus 102 v~aic~G~~~ll~~ 115 (196)
T PRK11574 102 VAAICAAPATVLVP 115 (196)
T ss_pred EEEECHhHHHHHHh
Confidence 99999999976543
No 133
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.80 E-value=0.0056 Score=45.88 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+.. .....+.+.+++ ..++++|.+||.|..+|+++
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 79999999996543 223345555554 57899999999999999885
No 134
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=96.74 E-value=0.0064 Score=47.24 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHhCCCeEEEEeCC---------------CCCHHHHhccCCCeEEECCC-CCCCCC--cchhHHHHHH-hCCCCCEE
Q 029484 4 LKYMGELGYHFEVYRND---------------ELTVEELKRKNPRGVLISPG-PGAPQD--SGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~---------------~~~~~~~~~~~~dglii~GG-~~~~~~--~~~~~~~~~~-~~~~~Pil 64 (192)
...|++.|++|.+.... +....+....+||.+||+|| +|.-.- .....+.+++ .+.+++|.
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIa 104 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIA 104 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEE
Confidence 35688889999888642 12223333358999999999 776432 2333344443 46799999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
.||.|=-++..+
T Consensus 105 aICaap~~al~a 116 (247)
T KOG2764|consen 105 AICAAPLTALAA 116 (247)
T ss_pred EeecchHHHHhh
Confidence 999986555444
No 135
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=96.59 E-value=0.0033 Score=47.03 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=34.9
Q ss_pred cCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.++|.|+|+||.... .+...+.+.+++ ..++++|.+||-|-.+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 379999999986322 223345555554 46889999999999999996
No 136
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.59 E-value=0.019 Score=48.83 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=90.2
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|+++|++++.+.. ...+++.. ++|+|+|.||.--.+ +.....+.|++ .+.++||+|=|.|+-.|++.+
T Consensus 264 l~~Lr~~GAelv~FSP--L~D~~lP~-~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 264 LELLREAGAELVFFSP--LADEELPP-DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HHHHHHCCCEEEEeCC--cCCCCCCC-CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhhe
Confidence 5679999999999965 22233332 599999999844322 11234555655 578999999999999999975
Q ss_pred ---CCeeeecCCcccc-----------ccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE--EcC
Q 029484 78 ---GGKIVRSPLGVMH-----------GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA--WTE 141 (192)
Q Consensus 78 ---gg~v~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a--~s~ 141 (192)
.|...++- +... -+...+. ..++.++...++.+.-..+|.-.+.. .++ .+... ..-
T Consensus 341 e~~~G~~~~M~-Gvlp~~~~m~~Rl~~lGY~~~~---~~~d~~~~~~G~~irGHEFHyS~~~~---~~~-~~~a~~~~~g 412 (451)
T COG1797 341 EDADGDTYEMV-GVLPGSTRMTKRLQALGYREAE---AVDDTLLLRAGEKIRGHEFHYSRLIT---EED-AEPAFRVRRG 412 (451)
T ss_pred eccCCceeeee-eeeccchhhhhhhhccceeEEE---ecCCcccccCCceeeeeeeeeeeccc---CCc-Cceeeeeecc
Confidence 33444432 1100 0011111 12344555445667777777655432 111 22222 111
Q ss_pred CCc---eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 142 DGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 142 ~~~---i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++. -.++... +++|.=.|-=.. ....+..+|+..+
T Consensus 413 ~g~~~~~~G~~~g---nv~asY~H~H~~---s~~~~~~~~v~~~ 450 (451)
T COG1797 413 DGIDNGRDGYRSG---NVLASYLHLHFA---SNPAFAARFVAAA 450 (451)
T ss_pred cCccccccceeeC---CeEEEEEeeecc---cCHHHHHHHHHhh
Confidence 222 2344433 477777665543 3356777777654
No 137
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.36 E-value=0.0063 Score=46.20 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCCeEEECCCCCCCC-----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~-----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|+|+||.+... ....+++.+++ ..++++|.+||.|..+|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 799999999865432 23344555554 56889999999999999985
No 138
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=96.33 E-value=0.077 Score=41.08 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=75.9
Q ss_pred HHHHHH-hCCCeEEEEeC-CCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH-------HH
Q 029484 3 FLKYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QC 72 (192)
Q Consensus 3 l~~~l~-~~g~~~~v~~~-~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~-------Q~ 72 (192)
+.+.++ +.|+++++... +....+.|. ++|.||+....+.. ......+.+++ +++|.+++||..+. .-
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~-l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~ 100 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDE-LTDEQRAALRDYVENGGGLVGLHGAATDSFPDWPE 100 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCG-S-HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT-HH
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCc-CCHHHHHHHHHHHHcCCCEEEEcccccccchhHHH
Confidence 456666 67888888753 223333444 89999998876422 12233444544 67999999999443 22
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC----------
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED---------- 142 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~---------- 142 (192)
....+||.....+. .. ...+. ....++++.++++..+....-...... .+.++..+|++...
T Consensus 101 ~~~l~Gg~f~~h~~---~~-~~~v~-~~~~~HPi~~gl~~~f~~~DE~Y~~~~---~~~~~~~vL~~~~~~~~~~~~~~~ 172 (217)
T PF06283_consen 101 YNELLGGYFKGHPP---PQ-PFTVR-VEDPDHPITRGLPESFTIYDEWYYFLR---DPRPNVTVLLTADESSYDPEGGEG 172 (217)
T ss_dssp HHHHHS--SEEEEC---EE-EEEEE-ESSTTSCCCTTS-SEEEEEEEEEES-B---S---CEEEEEEEE--GGG--TTTS
T ss_pred HHHeeCccccCCCC---Cc-eEEEE-EcCCCChhhcCCCCCceEccccccccc---CCCCCEEEEEEEEeccccccccCC
Confidence 34467765543321 11 11222 224578999999877765332222221 13345777776541
Q ss_pred --CceEEEeeCC-CCceEEEeccCCCC
Q 029484 143 --GLIMAARHKK-YKHLQGVQFHPESI 166 (192)
Q Consensus 143 --~~i~ai~~~~-~~~~~g~QfHPE~~ 166 (192)
.++.-....+ .+-++-...|.+.+
T Consensus 173 ~~~Pv~W~~~~GkGRvf~~~lGH~~~~ 199 (217)
T PF06283_consen 173 GDHPVAWTREYGKGRVFYTTLGHDEET 199 (217)
T ss_dssp SEEEEEEEEECTTEEEEEE----TTSH
T ss_pred CeEEEEEEEEeCCeeEEEECCCCChhh
Confidence 1344444333 34466677798764
No 139
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=96.20 E-value=0.0056 Score=45.28 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCCeEEECCCCC--CCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPG--APQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~--~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||+. .......+++.+++ ..++.+|.+||.|..+|+++
T Consensus 61 ~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 61 DFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred cCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 799999999988 12233445566654 56889999999999999997
No 140
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.97 E-value=0.015 Score=52.96 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=50.2
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~Pil 64 (192)
+.++|+.+|+.+.++..... +.++.....||+|+|+||..... .....+..+++ +..+++|.
T Consensus 616 ~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IA 695 (752)
T PRK11249 616 ILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIA 695 (752)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEE
Confidence 56788899999888854211 11112122599999999865432 23334455554 67889999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|.++|+.+
T Consensus 696 AiCaG~~LLaaA 707 (752)
T PRK11249 696 LAGDARKLKAAL 707 (752)
T ss_pred EeCccHHHHHhc
Confidence 999999999974
No 141
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=95.91 E-value=0.016 Score=44.67 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHH-Hhc-cCCCeEEECCCCCCCCC----cchhHHHHH-HhCCCCCEEeeeHhHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEE-LKR-KNPRGVLISPGPGAPQD----SGISLQTVL-ELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~-~~~-~~~dglii~GG~~~~~~----~~~~~~~~~-~~~~~~PilGIC~G~Q~l~ 74 (192)
+.+++++.|++++.+...+. +.++ +.. .+.|+|+++||...... .....+.+. .+.++.|+.|+|.|..++.
T Consensus 49 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~ 128 (210)
T cd03129 49 YRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMG 128 (210)
T ss_pred HHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhh
Confidence 46788899999887765211 1122 111 28999999997443211 111233333 3458999999999999999
Q ss_pred HH
Q 029484 75 EA 76 (192)
Q Consensus 75 ~~ 76 (192)
..
T Consensus 129 ~~ 130 (210)
T cd03129 129 ET 130 (210)
T ss_pred hc
Confidence 86
No 142
>PLN02929 NADH kinase
Probab=95.74 E-value=0.028 Score=45.84 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=41.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.++|++.|+++..+.-.+. .+.+ .++|.+|..||.| .+++..+.+..++|||||-.|
T Consensus 39 ~~~~L~~~gi~~~~v~r~~~-~~~~--~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 39 CKDILQQKSVDWECVLRNEL-SQPI--RDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHcCCEEEEeecccc-cccc--CCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence 57789999999977643222 1112 2789999999965 455555556678999999998
No 143
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=95.65 E-value=0.024 Score=42.67 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=34.5
Q ss_pred CCCeEEECCCCCCCC-CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~-~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+... .....++.+++ ..+++.|.+||-|..+|+++
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 789999999865432 22334555554 46889999999999999985
No 144
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=95.23 E-value=0.034 Score=45.68 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCeEEECCCCCCCCC-cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~-~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+.... ...+.+.+++ ..++++|.|||-|..+|+.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 7899999998653222 2334555554 45789999999999999986
No 145
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.80 E-value=0.19 Score=41.20 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=41.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC------------------CH-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL------------------TV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~------------------~~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~P 62 (192)
+.+||++.|+++.+...... +. .++ ..++|.+|..||.| .+++..+. ...++|
T Consensus 26 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG------T~L~aar~~~~~~~P 98 (306)
T PRK03372 26 VAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG------TILRAAELARAADVP 98 (306)
T ss_pred HHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH------HHHHHHHHhccCCCc
Confidence 67789999999888653110 00 111 12589999999965 45566554 356899
Q ss_pred EEeeeHhH
Q 029484 63 LFGVCMGL 70 (192)
Q Consensus 63 ilGIC~G~ 70 (192)
||||-.|.
T Consensus 99 ilGIN~G~ 106 (306)
T PRK03372 99 VLGVNLGH 106 (306)
T ss_pred EEEEecCC
Confidence 99999884
No 146
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.70 E-value=0.27 Score=40.13 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHHHHHhCCCeEEEEeCCCC---------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGI 66 (192)
+.+||++.|+++.+...... +..++. .++|.+|..||.| .+++..+.+ ..++|||||
T Consensus 26 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG------T~L~aa~~~~~~~~PilGI 98 (296)
T PRK04539 26 LITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG------TFLSVAREIAPRAVPIIGI 98 (296)
T ss_pred HHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH------HHHHHHHHhcccCCCEEEE
Confidence 67889999999987642100 011221 2589999999965 455665554 468999999
Q ss_pred eHhH
Q 029484 67 CMGL 70 (192)
Q Consensus 67 C~G~ 70 (192)
-.|.
T Consensus 99 N~G~ 102 (296)
T PRK04539 99 NQGH 102 (296)
T ss_pred ecCC
Confidence 9986
No 147
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.56 E-value=0.26 Score=40.23 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC----------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.+||++.|+++.+...... +..++. .++|.+|+.||.| .+++..+.+ ..++|||||-.|.
T Consensus 26 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGDG------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 26 LYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGDG------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred HHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCcH------HHHHHHHHhcCCCCeEEEEECCC
Confidence 67789999999887542100 111221 2589999999965 455655554 3479999999998
No 148
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.33 E-value=0.24 Score=40.36 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC----------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilG 65 (192)
+.+||++.|+++.+...... +..++. ..+|.+|+.||.| .+++..+.+ ..++||||
T Consensus 21 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG------T~L~aa~~~~~~~~PilG 93 (292)
T PRK01911 21 LFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG------TFLRTATYVGNSNIPILG 93 (292)
T ss_pred HHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcH------HHHHHHHHhcCCCCCEEE
Confidence 67789999999988642100 112222 1589999999965 455665554 46899999
Q ss_pred eeHhH
Q 029484 66 VCMGL 70 (192)
Q Consensus 66 IC~G~ 70 (192)
|-.|.
T Consensus 94 IN~G~ 98 (292)
T PRK01911 94 INTGR 98 (292)
T ss_pred EecCC
Confidence 99985
No 149
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.08 E-value=0.23 Score=40.16 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=41.6
Q ss_pred HHHHHHhCCCeEEEEeCCC-----C---CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDE-----L---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-----~---~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.+||++.|.++.+..... . ...++...++|.+|+.||.| .+++.++....++||+||-.|.
T Consensus 21 I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 21 VYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIEHKTKKDIPILGINMGT 90 (277)
T ss_pred HHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHHHhcCCCCeEEEEeCCC
Confidence 6788999999998864210 0 00122222689999999966 3445555445689999999986
No 150
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.92 E-value=0.32 Score=39.23 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=41.3
Q ss_pred HHHHHHhCCCeEEEEeCCC----------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G 69 (192)
+.+||++.|+++.+..... .+.+++. .++|.+|..||.| .+++..+.+ ..++|||||-.|
T Consensus 5 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence 6789999999998865210 0112222 2589999999965 455665554 468999999987
No 151
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=92.75 E-value=0.46 Score=38.74 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=41.9
Q ss_pred cHHHHHHhCCCeEEEEeCCC----------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
.+.+++++.|+++.+..... .+.+++. ..+|.+|..||.| .+++.++.+ ..++|+|||-.|.
T Consensus 25 ~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDG------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 25 SLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGDG------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 36788999999977754210 1112222 2589999999965 455666654 4689999999986
No 152
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.47 E-value=0.39 Score=39.04 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=41.6
Q ss_pred HHHHHHhCCCeEEEEeCCC-------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDE-------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.+||++.|+++.+..... .+..++. .++|.+|..||.| .+++..+.+ ..++|||||-.|.
T Consensus 30 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 30 LQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDG------TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCH------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 6778999999988864210 0112222 2689999999965 455666554 4689999999986
No 153
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.92 E-value=0.45 Score=39.04 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHhCCCeEEEEeCCC-------------------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-------------------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~P 62 (192)
+.+||++.|+++.+..... .+..++. .++|.+|+.||.| .+++..+.+ ..++|
T Consensus 22 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------TlL~aar~~~~~~iP 94 (305)
T PRK02649 22 LQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGGDG------TVLSAARQLAPCGIP 94 (305)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeCcH------HHHHHHHHhcCCCCc
Confidence 6778999999987754210 0111221 2589999999965 456666653 46899
Q ss_pred EEeeeHhH
Q 029484 63 LFGVCMGL 70 (192)
Q Consensus 63 ilGIC~G~ 70 (192)
||||-.|.
T Consensus 95 ilGIN~G~ 102 (305)
T PRK02649 95 LLTINTGH 102 (305)
T ss_pred EEEEeCCC
Confidence 99999873
No 154
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=91.49 E-value=0.13 Score=37.65 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
..++++++|+++..++....+.++.... +.|+|+++||.-.... ...+.+.+++ +.++.++.|+=.|.-++
T Consensus 5 ~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMIL 82 (154)
T ss_dssp HHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred HHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence 4578999999998888754333443322 7999999998332110 0112344444 56789999999998663
No 155
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=90.95 E-value=1 Score=32.05 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc--cCCCeEEECCCCCCCCCcchhHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLEL 57 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dglii~GG~~~~~~~~~~~~~~~~~ 57 (192)
+.+++++.|+++.....-..+.+++ .. ..+|.||.+||-+ +...+...+.++++
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHH
Confidence 6788999998765443211223322 11 2689999999966 44444444445443
No 156
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.84 E-value=0.64 Score=33.08 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCCeEEECCCCCCCCCcchh--HHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDSGIS--LQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~--~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
..|.+|+.||-..|.-.... .+.+.+-..++|++|+| |+-|.+.
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvC--fm~mF~r 130 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVC--FMNMFER 130 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEee--HHHHHHH
Confidence 48999999998877543322 23333334567999999 4555554
No 157
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.70 E-value=0.45 Score=38.23 Aligned_cols=49 Identities=33% Similarity=0.531 Sum_probs=35.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC---CCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~---~~~PilGIC~G~ 70 (192)
+.++|++.|+++ +. .++|.+|..||.| .+++..+.+. .++|++||-.|.
T Consensus 20 l~~~l~~~g~~~-----~~--------~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 20 LKKYLKDFGFIL-----DE--------KNPDIVISVGGDG------TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred HHHHHHHcCCcc-----CC--------cCCCEEEEECCcH------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 556777888772 10 1679999999965 4566666544 489999999885
No 158
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=90.50 E-value=0.51 Score=36.56 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=47.7
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCCcc-h-----hHHHHH-HhCCCCCEEeeeHhHHHH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSG-I-----SLQTVL-ELGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~~~-~-----~~~~~~-~~~~~~PilGIC~G~Q~l 73 (192)
.++|+..|+.++-++....+.+++... +.|+|++.||.- ...- . ....|+ +..+|+|.+|+-.|.-+-
T Consensus 55 ~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT--F~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 55 RNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT--FNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH--HHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 467899999999998877888887752 689999998732 1111 0 123344 378999999988765443
No 159
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.32 E-value=0.84 Score=36.49 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.+++.+.|..+...... . ....+.|.+|..||.| .+++..+.+ ++|||||-.|.
T Consensus 18 ~~~~l~~~~~~~~~~~~~-~----~~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilgin~G~ 72 (256)
T PRK14075 18 LKEKISKEHEVVEFCEAS-A----SGKVTADLIIVVGGDG------TVLKAAKKV--GTPLVGFKAGR 72 (256)
T ss_pred HHHHHHHcCCeeEeeccc-c----cccCCCCEEEEECCcH------HHHHHHHHc--CCCEEEEeCCC
Confidence 567888888876655321 1 1223789999999965 345555555 89999999885
No 160
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=90.32 E-value=0.79 Score=36.50 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=47.1
Q ss_pred HHHHHHhCCC-eEEEEeCCCCC---HHH-Hh-ccCCCeEEECCCCCCCC----CcchhHHHHH-HhCCCCCEEeeeHhHH
Q 029484 3 FLKYMGELGY-HFEVYRNDELT---VEE-LK-RKNPRGVLISPGPGAPQ----DSGISLQTVL-ELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~---~~~-~~-~~~~dglii~GG~~~~~----~~~~~~~~~~-~~~~~~PilGIC~G~Q 71 (192)
..++++.+|+ ++.++.....+ .++ +. ..+.|+|+++||..... ....+.+.++ .+.++.|+.|+=.|.-
T Consensus 48 ~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 48 YITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 4567889999 46666653211 111 11 12889999999854321 1122334454 3678999999999999
Q ss_pred HHHHH
Q 029484 72 CIGEA 76 (192)
Q Consensus 72 ~l~~~ 76 (192)
+++..
T Consensus 128 i~~~~ 132 (250)
T TIGR02069 128 VMSDT 132 (250)
T ss_pred hcccc
Confidence 88764
No 161
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.02 E-value=0.84 Score=37.28 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC----------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.++|++.|+++.+...... +..++. ..+|.+|..||.|. +++..+.+ ..++|||||-.|.
T Consensus 25 i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt------~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 25 LKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLG-EVCDLVIVVGGDGS------LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred HHHHHHHCCCEEEEecchhhhcCcccccccchhhcc-cCCCEEEEEeCcHH------HHHHHHHhcCCCCCEEEEeCCc
Confidence 57789999999888653110 011111 25899999999663 44444443 4789999999885
No 162
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=88.48 E-value=1 Score=37.29 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCeEEECCCCCCCCCc--chhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~--~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+|-+++.+|-...... ......+++ ..++.++-|||.|.-+|+++
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 37778887775544333 335566665 56899999999999999997
No 163
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=87.85 E-value=0.66 Score=38.14 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.|..+|++..++.-...+.+ +. ..|.||-.||.|....+. =+-+...+||+||
T Consensus 80 ~~~~l~k~giesklv~R~~lsq~-i~--waD~VisvGGDGTfL~Aa-----srv~~~~~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVSRNDLSQP-IR--WADMVISVGGDGTFLLAA-----SRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeeehhhccCc-Cc--hhhEEEEecCccceeehh-----hhhhccCCceeee
Confidence 45677889999988864444433 44 789999999988753322 1224567999998
No 164
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=87.81 E-value=4.7 Score=30.09 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc--cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.++|++.|+++..+..-..+.+.+ .. ..+|.||.+||-|...+ +...+.+.+. -++|+.+.---++.|-..
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~-D~t~ea~~~~-~~~~l~~~~e~~~~i~~~ 101 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHD-DLTREAVAKA-FGRPLVLDEEALERIEAR 101 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCC-ChHHHHHHHH-hCCCcccCHHHHHHHHHH
Confidence 6788999999886543222223322 21 26899999998554433 3333444442 247777777777777666
Q ss_pred hC
Q 029484 77 FG 78 (192)
Q Consensus 77 ~g 78 (192)
+.
T Consensus 102 ~~ 103 (170)
T cd00885 102 FA 103 (170)
T ss_pred HH
Confidence 54
No 165
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=87.63 E-value=1.6 Score=32.73 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=34.9
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHH---HhCCCCCEEeeeHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVL---ELGPTVPLFGVCMG 69 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~---~~~~~~PilGIC~G 69 (192)
.+.++. |.++.+++..+.+..++. +||.||+.++ -..... ..+..-+. ..-+++|+.-+|.|
T Consensus 22 a~~l~~-g~~v~~~~~~~~~~~~l~--~yD~vIlGsp-i~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 22 ASELKE-GIQCDVVNLHRIEEPDLS--DYDRVVIGAS-IRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHhCC-CCeEEEEEhhhcCccCHH--HCCEEEEECc-cccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 444555 788888887544433444 7898666543 333222 22222222 23367898888877
No 166
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=9.2 Score=29.87 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCeEEECCCCCCCCCcc---hhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCeeee
Q 029484 31 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVR 83 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~---~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~v~~ 83 (192)
+-..+|++||...++... .--+.|.. +.++--.||||.|. ++|.....
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~ve 100 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVE 100 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEEE
Confidence 456799999977765432 11233333 56788999999996 56665544
No 167
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.96 E-value=1.4 Score=39.32 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=40.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH----H-----HhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE----E-----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~----~-----~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.+||++.|+++.+......... + ....++|.+|+.||.| .+++..+.+ ..++|||||-.|.
T Consensus 311 i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG------T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 311 IIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG------TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 67789999998887642100000 0 0111579999999965 455666654 3689999999884
No 168
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.85 E-value=1.7 Score=34.99 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=35.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC--CCCCEEeeeH-h
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFGVCM-G 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~--~~~PilGIC~-G 69 (192)
+.+|+++.|+++.... .++|.+|+.||.| .+++..+.+. ..+|+|||-. |
T Consensus 22 l~~~l~~~g~~~~~~~-----------~~~D~vi~lGGDG------T~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 22 LKKIAEEYGFTVVDHP-----------KNANIIVSIGGDG------TFLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred HHHHHHHCCCEEEcCC-----------CCccEEEEECCcH------HHHHHHHHhcccCCCeEEeEecCC
Confidence 5678889998776321 1578999999965 4556555543 3689999999 6
No 169
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.80 E-value=2.1 Score=35.17 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHhCCCeEEEEeCCCC--CHH---HHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--~~~---~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~ 68 (192)
+.++|++.|+++.+...... +.. +.....+|.+|+.||.| .+++..+.+ ..++|++||-.
T Consensus 24 i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 24 CAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred HHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------HHHHHHHHhccCCCCEEEEec
Confidence 56788999999887653211 000 11112589999999966 344555543 46899999998
No 170
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=86.12 E-value=7.2 Score=28.37 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------c--CCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------K--NPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~--~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|.+++++.|+++.....-..+.+++.. . .+|.||.+||.+ +.+.+...+.+++
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s-~g~~D~t~~al~~ 85 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAPRDVTPEATRP 85 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCcCcHHHHHH
Confidence 677899999987766432233343322 1 589999999844 4333333344444
No 171
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=85.14 E-value=4.8 Score=28.56 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLEL 57 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~~ 57 (192)
+.+++++.|+++.....-..+.+++.. ..+|.||.+||-+-- ..+...+.++++
T Consensus 24 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g-~~D~t~~ai~~~ 83 (133)
T cd00758 24 LEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG-RRDVTPEALAEL 83 (133)
T ss_pred HHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC-CCcchHHHHHHh
Confidence 567899999988766332233333321 158999999985543 333334445443
No 172
>PLN02727 NAD kinase
Probab=84.72 E-value=2.3 Score=39.91 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHhC-CCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCE
Q 029484 3 FLKYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 63 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~Pi 63 (192)
|++||.+. |+++.+-+.... ...++. .++|.+|+.||.| .+++..+.+ ...+||
T Consensus 698 L~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDG------TlLrAar~~~~~~iPI 770 (986)
T PLN02727 698 VASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDG------VILHASNLFRGAVPPV 770 (986)
T ss_pred HHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCcH------HHHHHHHHhcCCCCCE
Confidence 67888887 888876532100 001111 2589999999965 455555543 467999
Q ss_pred EeeeHhH
Q 029484 64 FGVCMGL 70 (192)
Q Consensus 64 lGIC~G~ 70 (192)
|||-+|.
T Consensus 771 LGINlGr 777 (986)
T PLN02727 771 VSFNLGS 777 (986)
T ss_pred EEEeCCC
Confidence 9999884
No 173
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=84.66 E-value=3.3 Score=32.13 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=46.3
Q ss_pred HHHHHHhCCCe-EEEEeCCC----CCHHHHh-ccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHH
Q 029484 3 FLKYMGELGYH-FEVYRNDE----LTVEELK-RKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~g~~-~~v~~~~~----~~~~~~~-~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q 71 (192)
+.+++++.|+. +.++..+. .+.+-.. ..+.|+|++.||.-.... ...+.+.+++ ++++.|+.|+-.|.-
T Consensus 49 ~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~ 128 (217)
T cd03145 49 YRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAA 128 (217)
T ss_pred HHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHH
Confidence 45678888985 55554431 1111111 128999999998443211 1123344443 678999999999999
Q ss_pred HHHHHh
Q 029484 72 CIGEAF 77 (192)
Q Consensus 72 ~l~~~~ 77 (192)
++...+
T Consensus 129 i~~~~~ 134 (217)
T cd03145 129 VMSDTM 134 (217)
T ss_pred hhhhcc
Confidence 988753
No 174
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=84.36 E-value=1 Score=36.43 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=26.9
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhC-CCCCEEeeeHhH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELG-PTVPLFGVCMGL 70 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~-~~~PilGIC~G~ 70 (192)
....++|.+|+.||.| .+++..+.+. .++|||||-.|.
T Consensus 72 ~~~~~~D~ii~lGGDG------T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 72 MLEEGVDLIIVLGGDG------TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HHCCCSSEEEEEESHH------HHHHHHHHCTTST-EEEEEESSS
T ss_pred hcccCCCEEEEECCCH------HHHHHHHHhccCCCcEEeecCCC
Confidence 3334899999999954 4556666554 489999998874
No 175
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=84.04 E-value=0.33 Score=35.24 Aligned_cols=37 Identities=19% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCeEEECCCCCCCCCc---chhHHHHHHhCCCCCEEeeeH
Q 029484 31 NPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~---~~~~~~~~~~~~~~PilGIC~ 68 (192)
++|.|||.||-..|.-. ....+.+.++.. ..++|||+
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCEEEEEcccccCCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence 57899999997766533 334444555432 33999995
No 176
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=84.01 E-value=7.1 Score=28.13 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=31.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVL 55 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~ 55 (192)
.|.++|++.|+++.....-..+.+++.. .++|.||.+||.+.. +.+...+.+.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g-~~D~t~~ai~ 89 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG-PRDVTPEALE 89 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC-CCccHHHHHH
Confidence 3678899999988766432223343321 168999999985543 3333334443
No 177
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=83.42 E-value=8 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc----cCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR----KNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~----~~~dglii~GG~~~~ 44 (192)
|..++++.|+++.....-..+.+++ .. .++|.||.+||-|..
T Consensus 27 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 27 LVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred HHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 6778999999887664322233322 11 258999999995543
No 178
>PRK05568 flavodoxin; Provisional
Probab=83.40 E-value=7.3 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|.+++++...+.+..++. ++|+|++.-.
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iilgsp 57 (142)
T PRK05568 22 IAEGAKENGAEVKLLNVSEASVDDVK--GADVVALGSP 57 (142)
T ss_pred HHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEEECC
Confidence 45566778999999988666666666 7887777543
No 179
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.72 E-value=2.8 Score=33.82 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC--C--HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDEL--T--VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.+|+ ..|+++.+...... . ..+....++|.+|..||.|. +++..+.+. .|||||-.|
T Consensus 21 i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~--~PilGIN~G 82 (271)
T PRK01185 21 IIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK--GPILGINMG 82 (271)
T ss_pred HHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC--CCEEEEECC
Confidence 55677 56887766532100 0 00111226899999999663 455555443 599999998
No 180
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=82.48 E-value=1.8 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~ 44 (192)
++.++|++.|++|+..... .++. .+|++|++|...+.
T Consensus 12 ~v~~~L~~~GyeVv~l~~~----~~~~--~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENE----QDLQ--NVDAIVVTGQDTNM 48 (80)
T ss_pred HHHHHHHHCCCEEEecCCc----cccC--CcCEEEEECCCccc
Confidence 5788999999999888642 1222 79999999975543
No 181
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=82.12 E-value=7.1 Score=31.22 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSG 48 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~ 48 (192)
|++.|.+.|+++..+..--.+.++|.. .++|-||++||-|-..|+-
T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDi 77 (255)
T COG1058 26 LADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDL 77 (255)
T ss_pred HHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHh
Confidence 678899999998776543333444321 2699999999988766553
No 182
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.91 E-value=2.5 Score=31.42 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=37.7
Q ss_pred CCCeEEECCCCCCCCCcch-------------hHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 31 NPRGVLISPGPGAPQDSGI-------------SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~-------------~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
.+|++|++||.|....... +...... -+.++|+=-||..=-|+...+|..+
T Consensus 85 ~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 85 ELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred hcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 6899999999997643222 2233333 3689999999999999999988544
No 183
>PRK03094 hypothetical protein; Provisional
Probab=81.16 E-value=2.1 Score=27.80 Aligned_cols=37 Identities=8% Similarity=0.182 Sum_probs=27.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~ 44 (192)
++.++|++.|++|+-+... .+. ..+|++|++|-..+.
T Consensus 12 ~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n~ 48 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSNV 48 (80)
T ss_pred HHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcce
Confidence 4788999999999888631 112 279999999965543
No 184
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=81.01 E-value=2.1 Score=34.07 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~ 70 (192)
++|.+|..||.| .+++..+. ...++|||||-.|.
T Consensus 25 ~~Dlvi~iGGDG------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDG------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCH------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 679999999965 45666665 35689999999875
No 185
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.90 E-value=2.2 Score=34.23 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
++|.+|..||.| .+++..+.+ ..++|||||-.|.
T Consensus 33 ~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 33 GADYLFVLGGDG------FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCEEEEECCcH------HHHHHHHHhcCCCCcEEEEecCC
Confidence 679999999965 455666554 4789999999873
No 186
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=80.84 E-value=5.6 Score=34.95 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=38.3
Q ss_pred HHHHHH-hCCCeEEEEeCCCC----------------CHHHH--hccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCC
Q 029484 3 FLKYMG-ELGYHFEVYRNDEL----------------TVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 62 (192)
Q Consensus 3 l~~~l~-~~g~~~~v~~~~~~----------------~~~~~--~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~P 62 (192)
+.+||+ ..|+++.+.+.... +..++ ...++|.+|..||.| .+++..+.+ ...+|
T Consensus 215 I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG------TlL~Aar~~~~~~iP 288 (508)
T PLN02935 215 MVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG------TVLWAASMFKGPVPP 288 (508)
T ss_pred HHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH------HHHHHHHHhccCCCc
Confidence 567888 48888877542100 00111 112689999999965 455655554 35799
Q ss_pred EEeeeHh
Q 029484 63 LFGVCMG 69 (192)
Q Consensus 63 ilGIC~G 69 (192)
||||-.|
T Consensus 289 ILGIN~G 295 (508)
T PLN02935 289 VVPFSMG 295 (508)
T ss_pred EEEEeCC
Confidence 9999977
No 187
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=79.36 E-value=17 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....+.+..++. ++|+||+...
T Consensus 19 i~~~~~~~g~~v~~~~~~~~~~~~l~--~~d~iilgsp 54 (140)
T TIGR01753 19 IAEGLKEAGAEVDLLEVADADAEDLL--SYDAVLLGCS 54 (140)
T ss_pred HHHHHHhcCCeEEEEEcccCCHHHHh--cCCEEEEEcC
Confidence 45667778999999988766666666 6787766543
No 188
>PRK03670 competence damage-inducible protein A; Provisional
Probab=78.46 E-value=13 Score=29.74 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=28.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc---cCCCeEEECCCCCCCCCc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR---KNPRGVLISPGPGAPQDS 47 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~---~~~dglii~GG~~~~~~~ 47 (192)
|.++|++.|+++..+..-..+.+++ .. ..+|.||++||-|...++
T Consensus 25 la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD 76 (252)
T PRK03670 25 IAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDD 76 (252)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCC
Confidence 6788999999886554322223322 21 147999999996655443
No 189
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.84 E-value=6.7 Score=26.98 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=36.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCCCCC-CcchhHHHHHHhCC-CCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ-DSGISLQTVLELGP-TVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~~~~-~~~~~~~~~~~~~~-~~Pil 64 (192)
+..+|+..|+++...-. ..+.+++ ...++|.|.++....... ....+.+.+++... +++|+
T Consensus 19 ~~~~l~~~G~~V~~lg~-~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 19 VARALRDAGFEVIDLGV-DVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 56789999999977764 3666554 334899999987522221 12234445554443 44443
No 190
>PRK06703 flavodoxin; Provisional
Probab=75.50 E-value=10 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~ 38 (192)
|++.++..|.++.+....+.+..++. ++|.|++.
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~viig 55 (151)
T PRK06703 22 IKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIILG 55 (151)
T ss_pred HHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEEE
Confidence 55667888999998887655555555 78877773
No 191
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=75.32 E-value=12 Score=30.18 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=27.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEEC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 38 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~ 38 (192)
.+.++|++.|+++.++..++.....+...++|.++..
T Consensus 27 ~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 27 AVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred HHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 3678999999999999765433334444578988876
No 192
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=75.29 E-value=4.9 Score=28.83 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.++|++.|+++.....-..+.+++.. .+.|.||.+||-|... .+...+.+.++. ++++-|+..=++.+...
T Consensus 22 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~-~D~t~~a~~~~~-~~~l~~~~~~~~~~~~~ 99 (144)
T PF00994_consen 22 LAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGP-DDVTPEALAEAG-GRELPGFEELFRGVSMR 99 (144)
T ss_dssp HHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSST-TCHHHHHHHHHS-SEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCccc-CCcccHHHHHhc-CcccccChHHHHHHHHH
Confidence 678899999988644321123343321 1679999999966433 333334444332 23444444444445544
Q ss_pred hC
Q 029484 77 FG 78 (192)
Q Consensus 77 ~g 78 (192)
.|
T Consensus 100 pg 101 (144)
T PF00994_consen 100 PG 101 (144)
T ss_dssp ST
T ss_pred hh
Confidence 44
No 193
>PRK01215 competence damage-inducible protein A; Provisional
Probab=74.34 E-value=13 Score=29.88 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~ 44 (192)
|.+.+++.|+++.....-..+.+++.. .+.|.||++||-|..
T Consensus 28 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t 75 (264)
T PRK01215 28 IARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPT 75 (264)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 577899999988655321222333221 157999999985544
No 194
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=74.21 E-value=10 Score=32.54 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=32.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVL 55 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~ 55 (192)
|...+++.|.++.....-..+.+++.. .++|.||.+|| .|..+.+...+.++
T Consensus 208 l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG-~SvG~~D~v~~~l~ 265 (404)
T COG0303 208 LAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGG-VSVGDADYVKAALE 265 (404)
T ss_pred HHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCC-ccCcchHhHHHHHH
Confidence 567889999977766443333444322 16899999999 45555444444444
No 195
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=73.81 E-value=25 Score=27.38 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=59.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC----CHHHHhccCCCeEEECCCCCCCCCcchhHHHHH-HhCCCCCEEeeeHhHHH--HHH
Q 029484 3 FLKYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQC--IGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~-~~~~~~PilGIC~G~Q~--l~~ 75 (192)
+...|++.|++|.+...++. +.+.|. ++|.||..+-.+...-.....+.+. .+.+|.=++|+=.|+-- ...
T Consensus 28 ~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~--~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHsg~~s~~y~~ 105 (215)
T cd03142 28 IAAALAEYGFDVQTATLDEPEHGLTEEVLA--ETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHSGHYSKIFKK 105 (215)
T ss_pred HHHHHHhcCcEEEEEeccCccccCCHhHHh--cCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECCCcCCHHHHH
Confidence 56789999999986665432 223344 8999998543332222233333333 46777888887766531 112
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccc
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTA 116 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (192)
.+||.....- .+.+....+... ..++|+.++++..+..
T Consensus 106 lvGg~f~~~~--h~~~~~~~v~v~-~p~HPIt~Gl~~~f~~ 143 (215)
T cd03142 106 LMGTTCTLKW--REAGERERVWVV-EPGHPITDGIPEYIEL 143 (215)
T ss_pred hhCCccccee--cCCCceeEEEEe-cCCCchhcCCCCcccc
Confidence 4666531100 112222233222 3478888998876544
No 196
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=73.21 E-value=8.2 Score=32.17 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=28.1
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
..|.|++.||.|.. +.+.. ...++|+|||-.|--+-+
T Consensus 100 gVdlIvfaGGDGTa-------rDVa~av~~~vPvLGipaGvk~~S 137 (355)
T COG3199 100 GVDLIVFAGGDGTA-------RDVAEAVGADVPVLGIPAGVKNYS 137 (355)
T ss_pred CceEEEEeCCCccH-------HHHHhhccCCCceEeeccccceec
Confidence 58999999998854 55554 478999999998865433
No 197
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=73.06 E-value=15 Score=31.64 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~ 43 (192)
|...+++.|+++.....-..+.+.+. . .++|.||++||.+.
T Consensus 225 L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~ 271 (419)
T PRK14690 225 LLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASA 271 (419)
T ss_pred HHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccC
Confidence 56789999998875532222333332 1 26899999998443
No 198
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=72.92 E-value=14 Score=27.57 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc---cCCCeEEECCCCCCCCCc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR---KNPRGVLISPGPGAPQDS 47 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~---~~~dglii~GG~~~~~~~ 47 (192)
+.++|+++|.++.....-..+.+.+ .. ..+|.|+.+||-|-...+
T Consensus 32 l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RD 83 (169)
T COG0521 32 LVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRD 83 (169)
T ss_pred HHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCc
Confidence 6789999999873322111122222 11 138999999998865433
No 199
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=72.85 E-value=17 Score=29.72 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.|++.|.+.+++..... +..++ ....+|.||..||.|..
T Consensus 25 ~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv 71 (301)
T COG1597 25 VEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV 71 (301)
T ss_pred HHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH
Confidence 56788999999988876544 33333 22379999999998854
No 200
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=71.54 E-value=19 Score=30.85 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~ 43 (192)
|..++++.|+++.....-..+.+++. . .++|.||.+||.+.
T Consensus 209 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~ 255 (411)
T PRK10680 209 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSV 255 (411)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCCC
Confidence 56789999998866543223344332 1 26899999998543
No 201
>PRK13059 putative lipid kinase; Reviewed
Probab=71.46 E-value=15 Score=29.71 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.+++.|.++.++........+. ....+|.||+.||.|..
T Consensus 24 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 24 VIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred HHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHH
Confidence 4567888999987765432221111 12268999999998865
No 202
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=70.78 E-value=6.5 Score=31.84 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=37.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCC------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELGYHFEVYRNDEL------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G 69 (192)
.+..++...+.++.+.+--.. ...+.....+|.+++.||.| .+++..+. ...++||+||-+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDG------tlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 20 RLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDG------TLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred HHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcH------HHHHHHHHhccCCCCEEEEeCC
Confidence 356677777777777643100 01111112578899998855 34455544 3456999999999
No 203
>PRK05569 flavodoxin; Provisional
Probab=70.31 E-value=35 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+++-+++.|.++++.+..+.+..++. ++|+|++.-
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iilgs 56 (141)
T PRK05569 22 IADGAKEAGAEVTIKHVADAKVEDVL--EADAVAFGS 56 (141)
T ss_pred HHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEEEC
Confidence 44556668999988887655566666 788877753
No 204
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.96 E-value=11 Score=27.41 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=28.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH-h---ccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL-K---RKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~-~---~~~~dglii~GG~~ 42 (192)
+.+.|+++|++|........+ ++. . ..+.|.|.+|+=.+
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g 74 (143)
T COG2185 32 IARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDG 74 (143)
T ss_pred HHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccc
Confidence 467899999999999875444 443 2 23889999997444
No 205
>PRK03673 hypothetical protein; Provisional
Probab=69.63 E-value=23 Score=30.25 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcc------CCCeEEECCCCCCCCCc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRK------NPRGVLISPGPGAPQDS 47 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~------~~dglii~GG~~~~~~~ 47 (192)
|.+.|++.|+++.....-..+.+.+... .+|.||++||-|...|+
T Consensus 26 la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD 76 (396)
T PRK03673 26 LADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDD 76 (396)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcc
Confidence 6778999999986554322334444221 68999999997665443
No 206
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=69.46 E-value=20 Score=30.49 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~ 43 (192)
|..++++.|+++.....-..+.+.+.. ..+|.||.+||.+.
T Consensus 200 l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~ 246 (394)
T cd00887 200 LAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSV 246 (394)
T ss_pred HHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 667899999988776432233333321 15899999998543
No 207
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=69.23 E-value=1 Score=24.91 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.4
Q ss_pred CEEeeeHhHHHHHHHhC
Q 029484 62 PLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 62 PilGIC~G~Q~l~~~~g 78 (192)
-..|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 46789999999986543
No 208
>PLN02884 6-phosphofructokinase
Probab=69.17 E-value=4.5 Score=34.69 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 26 ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 26 ~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
.+...++|++|+.||.++......+.+...+....+|++|| |.||.-.+.
T Consensus 138 ~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~ 200 (411)
T PLN02884 138 SIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE 200 (411)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH
Confidence 34556899999999988765444444433333345888888 999987766
No 209
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=69.05 E-value=5.6 Score=35.44 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=38.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHH---Hh--CCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL---EL--GPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~---~~--~~~~PilGIC~G~Q~l~~ 75 (192)
|++++|.+.|++|=++.+...+.++ ....+|-.| - .+.+.++ +. ...+-++|.|+|--+++.
T Consensus 238 SlVr~lv~qG~~VflIsW~nP~~~~-r~~~ldDYv-~----------~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWRNPDKAH-REWGLSTYV-D----------ALKEAVDAVRAITGSRDLNLLGACAGGLTCAA 304 (560)
T ss_pred hHHHHHHHcCCeEEEEeCCCCChhh-cCCCHHHHH-H----------HHHHHHHHHHHhcCCCCeeEEEECcchHHHHH
Confidence 7899999999999999875433222 211222221 1 1223333 32 356779999999998886
No 210
>PRK00549 competence damage-inducible protein A; Provisional
Probab=69.04 E-value=24 Score=30.35 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=28.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQD 46 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~~~~ 46 (192)
|.+.|++.|+++..+..-..+.+++. . .++|.||++||-|-..+
T Consensus 25 L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt~d 74 (414)
T PRK00549 25 LSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPTKD 74 (414)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCCCC
Confidence 67889999998865532222233321 1 27899999999665443
No 211
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=68.90 E-value=3.1 Score=34.70 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=32.0
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+.+.+++...++|++|| |.||.-.+.
T Consensus 88 l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~ 149 (338)
T cd00363 88 LKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK 149 (338)
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH
Confidence 4555899999999987765554444444433345666665 788877666
No 212
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=68.65 E-value=6.6 Score=29.17 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc---chhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~---~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
++..|++.|.+|++.+..+. .++...+||.|||.-.--.-... ..+++.-.+.-..+|.--+|.+.
T Consensus 21 iA~~L~e~g~qvdi~dl~~~--~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl 89 (175)
T COG4635 21 IASHLRESGIQVDIQDLHAV--EEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNL 89 (175)
T ss_pred HHHHhhhcCCeeeeeehhhh--hccChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEEeeh
Confidence 56778999999999987543 33344499999996432111111 12233333334678988888653
No 213
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=68.41 E-value=19 Score=30.61 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHH-------HhccCCCeEEECCCCCCCCCcchh
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~-------~~~~~~dglii~GG~~~~~~~~~~ 50 (192)
+.+.|+..|+++.++.-. +.+.+. ....++|.||-.|| ||+.|..+.
T Consensus 49 v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~ 104 (377)
T COG1454 49 VLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKA 104 (377)
T ss_pred HHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 567888899888887532 122222 34448999999999 777665543
No 214
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=67.72 E-value=8.9 Score=25.30 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred HHHHHHhCCC-eEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.++++..|+ .+..+.........+....+|.+++--.... .+...+++.++....+.|++.++
T Consensus 14 l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 14 LEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp HHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 5677888898 6666543211123344457888888743222 33345677777777889999988
No 215
>PRK06756 flavodoxin; Provisional
Probab=67.71 E-value=24 Score=25.20 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=23.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|.++++.+..+. ...++. ++|+|++.-
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~gs 57 (148)
T PRK06756 22 IAGVIRETENEIEVIDIMDSPEASILE--QYDGIILGA 57 (148)
T ss_pred HHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEEEe
Confidence 55667788999988876433 234444 788877754
No 216
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.67 E-value=40 Score=26.11 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=25.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..+. ..+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 21 IEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677888999998876532221 1233348999999863
No 217
>PRK07308 flavodoxin; Validated
Probab=66.56 E-value=37 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEE
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 37 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii 37 (192)
+.+.+++.|..+++....+.+..++. ++|+||+
T Consensus 22 ia~~l~~~g~~~~~~~~~~~~~~~l~--~~d~vi~ 54 (146)
T PRK07308 22 VADKLRELGHDVDVDECTTVDASDFE--DADIAIV 54 (146)
T ss_pred HHHHHHhCCCceEEEecccCCHhHhc--cCCEEEE
Confidence 45667788999988887655555555 7888888
No 218
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=66.52 E-value=25 Score=27.11 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=34.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+++++.|+++.+......+..+ +...++||+|+.+... .... .+....++|++.++
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~~---~~~~~~~ipvv~~~ 84 (267)
T cd06284 21 IEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----PPTA---LTALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CHHH---HHHHhcCCCEEEEe
Confidence 567888999999887654222111 2223799999976421 1111 12234578888765
No 219
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=65.87 E-value=22 Score=31.79 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~ 43 (192)
|..++++.|+++.....-..+.+++.. .++|.||++||.+.
T Consensus 211 L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS~ 257 (546)
T PRK14497 211 LYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSA 257 (546)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 567799999987655322233444422 26899999998543
No 220
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=65.60 E-value=4.8 Score=35.04 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=35.3
Q ss_pred HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe-------------eeHhHHHHHH
Q 029484 26 ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGE 75 (192)
Q Consensus 26 ~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG-------------IC~G~Q~l~~ 75 (192)
.+..+++|.|++.||.++......+.+.+.+.+.++||+| -|.||+-.+.
T Consensus 171 ~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~ 233 (459)
T PTZ00286 171 TLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE 233 (459)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH
Confidence 3455689999999998876555555555544444566666 4999988766
No 221
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=65.51 E-value=30 Score=26.97 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=26.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
++.+.+++.|+++.+.........+ +...++||+|+.+.
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 20 SIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3567888999999998654222111 22237999999864
No 222
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=65.50 E-value=18 Score=28.33 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCeeeec
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 84 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~ 84 (192)
.+|++||+= +++ +.+..++++ ..+|++|||-..-..+...|-++...
T Consensus 69 GvdaiiIaC-----f~D-Pgl~~~Re~-~~~PviGi~eAsv~~A~~vgrrfsVi 115 (230)
T COG4126 69 GVDAIIIAC-----FSD-PGLAAARER-AAIPVIGICEASVLAALFVGRRFSVI 115 (230)
T ss_pred CCcEEEEEe-----cCC-hHHHHHHHH-hCCCceehhHHHHHHHHHhcceEEEE
Confidence 478888762 222 455666664 36999999999999998887655443
No 223
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=64.43 E-value=5.2 Score=35.69 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=32.3
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee---------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI---------------C~G~Q~l~~ 75 (192)
+..++.|++|+.||.++......+.+...+...++||+|| |.||.-.+.
T Consensus 160 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~ 223 (555)
T PRK07085 160 VKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATK 223 (555)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHH
Confidence 4555899999999988765544443333333345555554 899987766
No 224
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=63.63 E-value=35 Score=28.18 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=31.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc---cCCCeEEECCCCCCCCCcchhHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR---KNPRGVLISPGPGAPQDSGISLQTVLEL 57 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~---~~~dglii~GG~~~~~~~~~~~~~~~~~ 57 (192)
|..++++.|+++.....-..+.+.+ .. ..+|.||.+||-|. ...+...+.++.+
T Consensus 180 L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~-g~~D~tpeAl~~l 240 (312)
T PRK03604 180 IVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGL-GPRDVTPEALAPL 240 (312)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCC-CCCccHHHHHHHh
Confidence 6788999999887654322223322 21 25899999998553 3333333444443
No 225
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=63.43 E-value=5.4 Score=35.43 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=32.0
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee---------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI---------------C~G~Q~l~~ 75 (192)
+...+.|++|+.||.++......+-+...+.+.+++|+|| |.||.-.+.
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~ 220 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACK 220 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH
Confidence 4556899999999988765444443333333334566554 889887766
No 226
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=63.33 E-value=34 Score=26.58 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG 40 (192)
+.+.+++.|+++.++..+......+ ...++||+|+.+.
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 4567788999999886542222222 2247999999864
No 227
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=62.57 E-value=42 Score=27.73 Aligned_cols=53 Identities=6% Similarity=0.079 Sum_probs=30.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------c-CCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------K-NPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~-~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
+..++++.|+++.....-..+.+++.. . .+|.||++||.+ ....+...+.+++
T Consensus 184 l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts-vg~~D~tp~Ai~~ 243 (312)
T cd03522 184 LRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS-VDPDDVTPAAIRA 243 (312)
T ss_pred HHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc-cCCcchHHHHHHh
Confidence 567889999988655432223333321 1 389999998844 4444434444443
No 228
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=62.50 E-value=39 Score=26.05 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=25.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH---HH----HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV---EE----LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~---~~----~~~~~~dglii~GG 40 (192)
+.+++++.|+++.+...+.... .. +...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 21 ALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4567888999999887653322 11 22347999999865
No 229
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=62.29 E-value=5.9 Score=34.33 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=32.9
Q ss_pred HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe-------------eeHhHHHHHH
Q 029484 26 ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGE 75 (192)
Q Consensus 26 ~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG-------------IC~G~Q~l~~ 75 (192)
.+...++|.+++.||.++..-...+.+.+.+.+-++|++| -|.||+-.+.
T Consensus 167 ~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~ 229 (443)
T PRK06830 167 TLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE 229 (443)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH
Confidence 3455689999999998876554444444443333455555 4999987766
No 230
>PRK14072 6-phosphofructokinase; Provisional
Probab=62.04 E-value=5.3 Score=34.30 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=31.8
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe-------------eeHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG-------------IC~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+-+...+...++|++| .|.||.-.+.
T Consensus 99 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~ 160 (416)
T PRK14072 99 FKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK 160 (416)
T ss_pred HHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH
Confidence 455589999999998876544444333332333466666 4889877665
No 231
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=61.74 E-value=34 Score=30.99 Aligned_cols=41 Identities=29% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~ 43 (192)
|..++++.|+++.....-..+.+++. . .++|.||.+||.+.
T Consensus 218 l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~ 264 (633)
T PRK14498 218 LAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSA 264 (633)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCcC
Confidence 66789999998866532222333321 1 16899999999653
No 232
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=61.72 E-value=42 Score=26.94 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=27.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHH----HhccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dglii~GG~~~~ 44 (192)
+.+.+++.|.++.+...... ...+ .....+|.||+.||.|+.
T Consensus 24 i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 24 VIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred HHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 56678889999888764322 1221 122268999999998754
No 233
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=61.39 E-value=22 Score=30.03 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=28.9
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHH-------HhccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~-------~~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|++.|+++.++.-. +.+.+. ....++|+||-.|| |++.|..+.+
T Consensus 49 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 105 (382)
T cd08187 49 VIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKAI 105 (382)
T ss_pred HHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHH
Confidence 456778888887766321 122222 22347999998888 6666655443
No 234
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=61.08 E-value=6.8 Score=33.48 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=31.6
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+.+.+.+..-++|++|| |.||.-.+.
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~ 169 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE 169 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH
Confidence 4555899999999988764443333333322234666665 999987766
No 235
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.77 E-value=12 Score=25.55 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=27.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISP 39 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~G 39 (192)
.+..++++.|+++..+... .+.+++ ...++|.|.++.
T Consensus 19 ~la~~l~~~G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDAN-VPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHTTBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHCCCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEc
Confidence 4678899999999999764 443443 334899999975
No 236
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=60.66 E-value=23 Score=30.50 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQ 45 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~ 45 (192)
|.+++++.|+++.....-..+.+.+.. .++|.||++||-|-..
T Consensus 25 l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt~ 73 (413)
T TIGR00200 25 LADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGPTS 73 (413)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 677899999988655322222333311 2689999999965443
No 237
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.60 E-value=32 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=36.6
Q ss_pred HHHHHHhCCCeEEEEeC-CCCCHHHH-------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRN-DELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~-~~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|++.|+.+..... .+.+.+.+ ...++|.||-.|| |++.|..+.+... .++|++.|-
T Consensus 41 v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia~~----~~~P~iaIP 108 (351)
T cd08170 41 IEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVADY----LGAPVVIVP 108 (351)
T ss_pred HHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHHHH----cCCCEEEeC
Confidence 45677888887643222 12333332 2237899999998 7777766555443 357877765
No 238
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=60.34 E-value=53 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-H--H----HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-V--E----ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~--~----~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+ . . .+...++||+|+.+.
T Consensus 21 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 21 IESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 567788899999888653222 1 1 122337999999864
No 239
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=60.26 E-value=7 Score=35.27 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=31.3
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHh-------------CCCCC--EEeeeHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-------------GPTVP--LFGVCMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-------------~~~~P--ilGIC~G~Q~l~~ 75 (192)
+..++.|++|+.||.++......+-+..++. +++++ ..=.|.||.-.+.
T Consensus 169 l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k 232 (610)
T PLN03028 169 CEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICK 232 (610)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHH
Confidence 4555899999999988765544443333222 34444 4456899987776
No 240
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=60.06 E-value=26 Score=29.59 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcch
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 49 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~ 49 (192)
+.+.|+..|+++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+
T Consensus 49 v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aK 103 (379)
T TIGR02638 49 VTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAK 103 (379)
T ss_pred HHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 455677778877766311 1222221 2237888888877 66655443
No 241
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.50 E-value=33 Score=29.57 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=26.8
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHh-------------ccCCCeEEECCCCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELK-------------RKNPRGVLISPGPG 42 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~-------------~~~~dglii~GG~~ 42 (192)
|+++++|.+.|++|...........++. ..++|.||.++|-.
T Consensus 22 ~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 22 LATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred HHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 5678999999999888764211111111 01588899998754
No 242
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=59.27 E-value=64 Score=24.43 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=13.2
Q ss_pred HHHHHHh-CCCeEEEEeCC
Q 029484 3 FLKYMGE-LGYHFEVYRND 20 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~ 20 (192)
+++.+++ .|++++++...
T Consensus 22 ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 22 VAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred HHHHHhhcCCcEEEEEecc
Confidence 4556676 89999888763
No 243
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=59.06 E-value=24 Score=29.98 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchh
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~ 50 (192)
+.+.|++.|+++.++... +.+.+.+ ...++|.||-.|| |++.|..+.
T Consensus 69 v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~AKa 124 (395)
T PRK15454 69 LTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDAAKA 124 (395)
T ss_pred HHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHHH
Confidence 456788889988776311 2222322 2238999999998 666555443
No 244
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=58.78 E-value=7.7 Score=34.69 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=31.1
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe---------------eeHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG---------------IC~G~Q~l~~ 75 (192)
+..++.|++|+.||.++......+-+..++....++|+| .|.||.-.+.
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k 249 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACK 249 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHH
Confidence 455589999999998876544433333332233355554 3999988776
No 245
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=58.67 E-value=66 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+.... +.+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 21 ISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred HHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 4567888999998876532221 1223347999999864
No 246
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=58.22 E-value=60 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=26.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+.+.++.....+.. .+....+||+|+.+..
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 21 IQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 56778889999998865322211 2333489999999753
No 247
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=57.87 E-value=45 Score=30.19 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~ 43 (192)
|..++++.|+++.....-..+.+.+. . .++|.||.+||.+.
T Consensus 399 L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s~ 445 (597)
T PRK14491 399 IKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVSV 445 (597)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 67789999998865532222333332 1 26899999998443
No 248
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=57.32 E-value=40 Score=28.63 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=29.5
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|++.|+++.++.-. +.+.+.+ ...++|.||-.|| |+..|....+
T Consensus 41 v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~i 97 (398)
T cd08178 41 VIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAKIM 97 (398)
T ss_pred HHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHH
Confidence 456778889888776421 1222222 2337999998888 6666655443
No 249
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=57.25 E-value=36 Score=28.65 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|++.|+++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+.+
T Consensus 43 v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKai 99 (375)
T cd08194 43 LTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKAI 99 (375)
T ss_pred HHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 445677778877766321 2222222 2237888888887 6665554443
No 250
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.13 E-value=68 Score=24.83 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH--H----HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE--E----LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~--~----~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+.. + +....+||+|+.++
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 21 AEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 56778889999988754322211 1 22337999999875
No 251
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=56.87 E-value=43 Score=28.17 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=30.2
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~ 52 (192)
+.+.|++.|+++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+.+.
T Consensus 44 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ia 101 (375)
T cd08179 44 VEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKAMW 101 (375)
T ss_pred HHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 456677788888776421 2333322 2237899999988 77766655443
No 252
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=56.85 E-value=58 Score=26.83 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+...+..+. +.+....+||+|+.|
T Consensus 80 i~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 80 IEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5677888999999998754221 123444899999998
No 253
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=56.42 E-value=74 Score=24.62 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG~~ 42 (192)
+.+.+++.|+++.+........ ..+....+||+|+.++..
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~ 66 (273)
T cd01541 21 IESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKS 66 (273)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 4677888999998876432221 123444899999987543
No 254
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.03 E-value=62 Score=25.40 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=27.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...++ ..+.+...++||+|+.+.
T Consensus 29 i~~~~~~~gy~~~~~~~~~-~~~~l~~~~vdgiIi~~~ 65 (269)
T cd06287 29 AAESALERGLALCLVPPHE-ADSPLDALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHCCCEEEEEeCCC-chhhhhccCcCeEEEecC
Confidence 5678899999999987642 233455558999999753
No 255
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.01 E-value=67 Score=24.74 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|.++.+...+..+.. .+....+||+|+.+-
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 21 VEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45678889999988765322221 123337999999874
No 256
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=55.90 E-value=38 Score=28.45 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~ 52 (192)
+...|++.|.++.++... +.+.+.+ ...++|.||-.|| |++.|....+.
T Consensus 46 v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ia 103 (376)
T cd08193 46 LLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKLVA 103 (376)
T ss_pred HHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 345667777777665311 1222222 2236788888888 66665554433
No 257
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=55.12 E-value=62 Score=21.77 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=32.1
Q ss_pred HHHHHhCCCeEEEEeCCCCC---H-HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEE
Q 029484 4 LKYMGELGYHFEVYRNDELT---V-EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~---~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~Pil 64 (192)
.++|++.|+.+..+...... . +-+...++|.||-..........+..++ -.+++.++|++
T Consensus 36 ~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iR-R~Av~~~ipl~ 99 (110)
T cd01424 36 AKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIR-RAALEYKVPYF 99 (110)
T ss_pred HHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCccCccHHHHH-HHHHHhCCCEE
Confidence 56788888887776432111 1 1233458898888754222111122211 11356789988
No 258
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=54.94 E-value=9.6 Score=33.99 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=30.8
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee---------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI---------------C~G~Q~l~~ 75 (192)
+..++.|++|+.||.++......+-+...+.+..++|+|| |.||.-.+.
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k 225 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATK 225 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH
Confidence 4555899999999988664444333333322333555554 889987766
No 259
>PLN02564 6-phosphofructokinase
Probab=54.86 E-value=9.2 Score=33.51 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=33.2
Q ss_pred HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 26 ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 26 ~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
.+..+++|+|++.||.++......+.+.+.+.+-.++|+|| |.||+-.+.
T Consensus 171 ~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~ 233 (484)
T PLN02564 171 SIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 233 (484)
T ss_pred HHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH
Confidence 35556899999999988765555444444433333446664 999987766
No 260
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=54.73 E-value=21 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=24.7
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEEC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLIS 38 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~ 38 (192)
|++-++|++.|+++++.+.+ ..+.... ++|.+|.+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~d---iss~~~~~~~aDiiVtt 41 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCA---VGEYKSELSGADIIIAS 41 (85)
T ss_pred HHHHHHHHHcCCCeEEEEee---hhhcccCCCCCCEEEEC
Confidence 67889999999998888875 3333333 56766666
No 261
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=54.68 E-value=41 Score=28.30 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|+..|+++.++... +.+.+.+ ...++|.||-.|| |++.|....+
T Consensus 39 v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~i 94 (374)
T cd08183 39 LIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKAI 94 (374)
T ss_pred HHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHHH
Confidence 456688889988776432 2222222 2237899999998 7776655443
No 262
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=54.06 E-value=76 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=11.8
Q ss_pred HHHHHhC-CCeEEEEeCC
Q 029484 4 LKYMGEL-GYHFEVYRND 20 (192)
Q Consensus 4 ~~~l~~~-g~~~~v~~~~ 20 (192)
.+-+++. |+++++++..
T Consensus 22 a~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 22 AEGAREVDGAEVVVKRVP 39 (197)
T ss_pred HHHHHhcCCCEEEEEecc
Confidence 4455664 9999888764
No 263
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=53.96 E-value=33 Score=28.46 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=35.7
Q ss_pred HHHHHHhCCCeEEEEe-C-CCCCHHHH-------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYR-N-DELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~-~-~~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++.++. + .+.+.+.+ ...++|.||-.|| |++.|....+... .++|++.|.-
T Consensus 41 v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ia~~----~~~p~i~VPT 110 (345)
T cd08171 41 IKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVLADK----LGKPVFTFPT 110 (345)
T ss_pred HHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHHH----cCCCEEEecC
Confidence 3456777788776443 1 12233322 1237899998888 6666665554433 2578777764
No 264
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=53.71 E-value=38 Score=28.61 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=27.4
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcch
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 49 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~ 49 (192)
+...|++.|.++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+
T Consensus 50 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 50 VTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred HHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 455677888888776321 1222222 2337899998887 66655544
No 265
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=53.36 E-value=69 Score=24.64 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=33.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
.+.+.+++.|+.+.+......+.. .+...++||+|+.+.... ....+.+ ...++|++.+
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~----~~~~~~l--~~~~iPvv~~ 84 (268)
T cd06273 20 AFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS----PALLDLL--ARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHH--HhCCCCEEEE
Confidence 356778889999988754322221 123337999999864321 1222222 2356887765
No 266
>PRK09271 flavodoxin; Provisional
Probab=53.15 E-value=58 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH--hccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dglii~G 39 (192)
|++.++..|+++.+......+..++ ...++|+|+|..
T Consensus 21 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 21 IEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred HHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 5677888899988776543332221 112677777764
No 267
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.96 E-value=81 Score=24.23 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..... .+....+||+|+.+.
T Consensus 21 i~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 21 MERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45678889999988765322211 123337999999864
No 268
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=52.46 E-value=83 Score=24.12 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+++++.|.++.+......+.. .+...++||+|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 21 IDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 45678889999988865322221 223348999999864
No 269
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=52.45 E-value=65 Score=24.97 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHH-H------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDE-LTVE-E------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~~~-~------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+...+. .+.. + +...++||+|+.+..... ....++.+ .+.++|++.+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~--~~~~iPvV~~ 88 (275)
T cd06320 21 YENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVN--LVPAVERA--KKKGIPVVNV 88 (275)
T ss_pred HHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHH--hHHHHHHH--HHCCCeEEEE
Confidence 5577888999998875321 1111 1 222379999997642211 11122222 2357887666
No 270
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=52.07 E-value=59 Score=22.47 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~ 41 (192)
+..+|+..|+++...-.+ .+.+++ ...++|.|.+++..
T Consensus 19 ~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 19 IARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc
Confidence 356789999999999764 565554 33489999998753
No 271
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.92 E-value=43 Score=28.21 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=29.5
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|+..|+++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+.+
T Consensus 46 v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~i 102 (380)
T cd08185 46 VIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKAI 102 (380)
T ss_pred HHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 456778889888766311 2233332 2237999998888 6766655443
No 272
>PRK08227 autoinducer 2 aldolase; Validated
Probab=51.78 E-value=24 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 55 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~ 55 (192)
++.-.++|+++.-+.|...+..++...-+--|++.||+.. .+ ..+++.++
T Consensus 164 aRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~-~~-~~~L~~v~ 213 (264)
T PRK08227 164 TRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKL-PE-RDALEMCY 213 (264)
T ss_pred HHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCC-CH-HHHHHHHH
Confidence 4555678999999987432344444334567999999876 33 44555444
No 273
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=51.51 E-value=43 Score=28.06 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=36.7
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|..+...... +.+.+.+ ...++|.||-.|| |++.|........ .++|++.|.-
T Consensus 48 v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~----~~~p~i~IPT 116 (366)
T PRK09423 48 VEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVADY----LGVPVVIVPT 116 (366)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHHHH----cCCCEEEeCC
Confidence 345677778876432221 2333322 2237899999988 7776666554432 3688888875
No 274
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=51.29 E-value=53 Score=28.36 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=27.2
Q ss_pred Cc-HHHHHHhCCCeEEEEeCCCCC-HHHHhc--------------cCCCeEEECCCCC
Q 029484 1 MT-FLKYMGELGYHFEVYRNDELT-VEELKR--------------KNPRGVLISPGPG 42 (192)
Q Consensus 1 ~~-l~~~l~~~g~~~~v~~~~~~~-~~~~~~--------------~~~dglii~GG~~ 42 (192)
|+ ++++|.+.|++|........+ ..++.. .++|.||+++|-.
T Consensus 20 ~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 20 MSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIP 77 (461)
T ss_pred HHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCC
Confidence 45 789999999999888643221 112211 1578899988743
No 275
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.00 E-value=62 Score=25.54 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+......+.. .+....+||+|+.+...+. ...+++.+. ..++||..+
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~--~~~ipvV~~ 86 (288)
T cd01538 21 FEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEA--LASAVEKAA--DAGIPVIAY 86 (288)
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhh--HHHHHHHHH--HCCCCEEEE
Confidence 45678889999999876422211 1233489999998642211 112222222 356776655
No 276
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=50.95 E-value=47 Score=28.12 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=26.9
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|++.|+.+.++.-. +.+.+.+ ...++|.||-.|| |++-|..+.+
T Consensus 51 v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~AK~i 107 (383)
T PRK09860 51 VQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAKGI 107 (383)
T ss_pred HHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHH
Confidence 455677778877665321 1223322 2237888887877 6665554433
No 277
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=50.38 E-value=73 Score=24.52 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=26.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+...+..+.. .+....+||+|+.+..
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 21 LEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45678889999988865422211 1233489999998753
No 278
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=50.23 E-value=67 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=24.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.++... .+.+ .+...++||+|+.++
T Consensus 21 i~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 21 TKAEAEALGGDLRVYDAG-GDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 457788999999887542 2222 122337999999864
No 279
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=50.03 E-value=38 Score=28.66 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHhCCCeEEEEeCCC--CCHHHH-------hccCCCeEEECCCCCCCCCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRNDE--LTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~--~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~ 52 (192)
+.+.|++.|+++.++.-.. .+..++ ...++|.||-.|| |++.|....+.
T Consensus 42 v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ia 99 (386)
T cd08191 42 LVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKIAG 99 (386)
T ss_pred HHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 4456777888887764221 122211 2237899998888 66666554433
No 280
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=49.61 E-value=58 Score=27.49 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=27.7
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|+..|+++.++.-. +.+.+.+ ...++|.||-.|| |++.|....+
T Consensus 47 v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 103 (383)
T cd08186 47 VEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKSA 103 (383)
T ss_pred HHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 455677788877776421 1222222 2236888888887 6666655443
No 281
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=49.45 E-value=44 Score=27.80 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=31.4
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|++.|+.+.+..++ +.+.+.+ ...++|.||-.|| |++.|....+... .++|++.|.
T Consensus 41 v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia~~----~~~p~i~VP 108 (349)
T cd08550 41 FEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAVADR----LDKPIVIVP 108 (349)
T ss_pred HHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHHHH----cCCCEEEeC
Confidence 345566667654333322 2232222 2236788887777 6665555444322 356776665
No 282
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=49.33 E-value=55 Score=24.79 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+.... .+.+ .+...++|++|+.+...+... ++. ....++|++.+
T Consensus 21 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~----~~~--~~~~~ipvv~~ 84 (264)
T cd06267 21 IEEAAREAGYSVLLCNSD-EDPEKEREALELLLSRRVDGIILAPSRLDDEL----LEE--LAALGIPVVLV 84 (264)
T ss_pred HHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCcCEEEEecCCcchHH----HHH--HHHcCCCEEEe
Confidence 456677789999988764 3221 122237999999876543211 111 13456776665
No 283
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.25 E-value=81 Score=24.71 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEEEeCCC--CCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~--~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.++.... .....+...++||+|+.+.
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 26 VAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 4577888999999987532 1122233458999999875
No 284
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.03 E-value=79 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+......... .+....+||||+.+
T Consensus 21 i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 21 AKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 56778889999988765322111 12223799999975
No 285
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=48.97 E-value=83 Score=21.38 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=34.3
Q ss_pred HHHHHhCCCeEEEEeC-CC---CC-HHHHhc-cCCCeEEECCCCCC---CCCcchhHHHHHHhCCCCCEE
Q 029484 4 LKYMGELGYHFEVYRN-DE---LT-VEELKR-KNPRGVLISPGPGA---PQDSGISLQTVLELGPTVPLF 64 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~-~~---~~-~~~~~~-~~~dglii~GG~~~---~~~~~~~~~~~~~~~~~~Pil 64 (192)
.++|++.|++++.+.. .+ .. .+-+.. .++|.||-.+.+.. ....+..++.. +...++|++
T Consensus 35 a~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~-A~~~~Ip~~ 103 (112)
T cd00532 35 SRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRL-ARLYKIPVT 103 (112)
T ss_pred HHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHH-HHHcCCCEE
Confidence 6789999999887743 11 11 233455 58999999875333 22222222211 245678876
No 286
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=48.89 E-value=50 Score=27.81 Aligned_cols=47 Identities=19% Similarity=0.391 Sum_probs=27.6
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchh
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~ 50 (192)
+.+.|++.|+++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+.
T Consensus 48 v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ 103 (377)
T cd08176 48 VTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKA 103 (377)
T ss_pred HHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 456677788887766421 2222222 2237899998887 666554443
No 287
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=48.68 E-value=45 Score=22.62 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~ 42 (192)
+...+++.|+++.....+ .+.+++ ...++|.|.+|....
T Consensus 19 ~~~~l~~~G~~v~~l~~~-~~~~~~~~~i~~~~pdiV~iS~~~~ 61 (125)
T cd02065 19 VAIALRDNGFEVIDLGVD-VPPEEIVEAAKEEDADVVGLSALST 61 (125)
T ss_pred HHHHHHHCCCEEEEcCCC-CCHHHHHHHHHHcCCCEEEEecchH
Confidence 567789999999988653 444443 334899999986443
No 288
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.51 E-value=69 Score=27.46 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=26.7
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCC--HHHHhc-----------------cCCCeEEECCCCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELT--VEELKR-----------------KNPRGVLISPGPG 42 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~--~~~~~~-----------------~~~dglii~GG~~ 42 (192)
|+.+++|.+.|+.|.+......+ ..++.. .++|.||.++|-.
T Consensus 18 ~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 18 ISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 45788899999998887643222 112211 1578888888743
No 289
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=48.42 E-value=61 Score=27.88 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=27.0
Q ss_pred Cc-HHHHHHhCCCeEEEEeCCCCC-HHHHhc--------------cCCCeEEECCCCC
Q 029484 1 MT-FLKYMGELGYHFEVYRNDELT-VEELKR--------------KNPRGVLISPGPG 42 (192)
Q Consensus 1 ~~-l~~~l~~~g~~~~v~~~~~~~-~~~~~~--------------~~~dglii~GG~~ 42 (192)
|+ ++++|.+.|++|.+......+ .+++.. .++|.||+++|-.
T Consensus 12 m~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~ 69 (448)
T TIGR01082 12 MSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIK 69 (448)
T ss_pred HHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCC
Confidence 55 899999999999888643211 112211 1478888888743
No 290
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=48.33 E-value=56 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~ 52 (192)
+.+.|++.|+++.++... +.+.+.+ ...++|.||-.|| |++.|....+.
T Consensus 44 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ia 101 (370)
T cd08192 44 VLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKAVA 101 (370)
T ss_pred HHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 345667777777665311 1222222 2236788887777 66655554433
No 291
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=47.89 E-value=72 Score=24.40 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+.+.+......+.. .+...++||+|+.++.. . ....++.+ ...++|++.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~-~~~~~~~~--~~~~ipvV~~~ 86 (266)
T cd06282 21 IQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADA--A-TSPALDLL--DAERVPYVLAY 86 (266)
T ss_pred HHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC--C-chHHHHHH--hhCCCCEEEEe
Confidence 45678889999998865321111 12234799999976432 1 11222222 23567876654
No 292
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.24 E-value=65 Score=24.72 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEE-eCCCCCHHH-------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVY-RNDELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~-~~~~~~~~~-------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.+++++.|+++.++ ... .+.+. +...++||||+.+... ......++.+ .+.++||+.+=..
T Consensus 20 ~~~~a~~~g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~~~~~--~~~~~~l~~~--~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVSPVDP--DSLAPFLEKA--KAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHTCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEESSST--TTTHHHHHHH--HHTTSEEEEESST
T ss_pred HHHHHHHcCCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEecCCCH--HHHHHHHHHH--hhcCceEEEEecc
Confidence 456778899999996 543 33222 2223799999987433 2222333332 2356777775444
No 293
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=47.20 E-value=73 Score=25.40 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH-----HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE-----LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~-----~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..+..+ +...++||+|+.+-
T Consensus 23 Ie~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 23 IEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 567788999999887654222221 33348999999943
No 294
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=47.15 E-value=67 Score=26.80 Aligned_cols=48 Identities=27% Similarity=0.462 Sum_probs=28.4
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.|+..|.++.++.-. +.+.+.+ ...++|.||-.|| |+..|..+.+
T Consensus 46 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~i 102 (357)
T cd08181 46 VTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKAI 102 (357)
T ss_pred HHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 455677788887766311 1222222 2337899999988 6666555443
No 295
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.01 E-value=79 Score=24.40 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..+..+ +...++||||+.+.
T Consensus 24 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 24 IEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456778899999887654322111 22347999999873
No 296
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.98 E-value=1.1e+02 Score=23.52 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+.....+ +...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 21 VEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 556788899999888654322211 22337999999764
No 297
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=46.97 E-value=93 Score=21.40 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHh-CCCeEEEEeC--CCCC---HHHHhccCCCeEEECCCC-CCCC-CcchhHHHHHH--hCCCCCEE
Q 029484 3 FLKYMGE-LGYHFEVYRN--DELT---VEELKRKNPRGVLISPGP-GAPQ-DSGISLQTVLE--LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~--~~~~---~~~~~~~~~dglii~GG~-~~~~-~~~~~~~~~~~--~~~~~Pil 64 (192)
-.++|++ .|+.++.++. .+.. .+-+...++|.||-+..+ +.-. ... -..+++ ...++|++
T Consensus 36 Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~d--g~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 36 TGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPD--VKALLRLCDVYNIPLA 105 (115)
T ss_pred HHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCccccc--HHHHHHHHHHcCCCEE
Confidence 4678888 8999887743 2222 222344589999999876 4322 221 122332 55778876
No 298
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.50 E-value=1.1e+02 Score=24.52 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhcc--CCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRK--NPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~--~~dglii~GG 40 (192)
+.+.+++.|+++.+........ ..+... .+||||+.+.
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 22 MQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 4567788999998886532221 123344 7999999764
No 299
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=46.07 E-value=1.3e+02 Score=24.02 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+...+..+.. .+...++||+|+.+..
T Consensus 78 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 78 VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45678889999888765322211 1233479999998743
No 300
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=45.78 E-value=82 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=25.9
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~ 52 (192)
+.+.|+..|.++.++.-. +.+.+.+ ...++|.||-.|| |++.|..+.+.
T Consensus 46 v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ia 103 (374)
T cd08189 46 VLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKAIA 103 (374)
T ss_pred HHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 345566677777665321 1222211 2236788887777 66655554433
No 301
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=45.59 E-value=44 Score=27.64 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=11.2
Q ss_pred CCCeEEECCCCCCCCCcchhH
Q 029484 31 NPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~ 51 (192)
++|.||-.|| |+..|.....
T Consensus 78 ~~d~iIaiGG-Gs~~D~aK~~ 97 (339)
T cd08173 78 GADFVIGVGG-GRVIDVAKVA 97 (339)
T ss_pred CCCEEEEeCC-chHHHHHHHH
Confidence 5666776666 5554444433
No 302
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=45.33 E-value=1.1e+02 Score=23.25 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+.. .+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 21 ILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45677889999988765322221 123348999999864
No 303
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=45.27 E-value=13 Score=30.73 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=26.9
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++...... +.+ .++|++|| |.||.-.+.
T Consensus 88 l~~~~Id~Li~IGGdgs~~~a~~----L~e--~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~ 143 (317)
T cd00763 88 LKKHGIDALVVIGGDGSYMGAMR----LTE--HGFPCVGLPGTIDNDIPGTDYTIGFDTALN 143 (317)
T ss_pred HHHcCCCEEEEECCchHHHHHHH----HHH--cCCCEEEecccccCCCCCCccCCCHHHHHH
Confidence 45568999999999776432222 211 24666655 788877665
No 304
>PRK00153 hypothetical protein; Validated
Probab=45.01 E-value=81 Score=21.32 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 133 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 133 ~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
...+.+++.++.|...-..++. +..+..+|+.. .+.+...+...+..
T Consensus 28 ~~~~~~~s~~G~V~V~v~G~~~-v~~i~Id~~ll-~~~d~e~LedlI~~ 74 (104)
T PRK00153 28 QMEVEGEAGGGLVKVTMTGKKE-VKRVKIDPSLV-DPEDVEMLEDLILA 74 (104)
T ss_pred ccEEEEEECCCeEEEEEecCce-EEEEEECHHHc-CCcCHHHHHHHHHH
Confidence 4577888999999998888875 99999999985 33344444444433
No 305
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=44.99 E-value=1.1e+02 Score=23.39 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=24.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||+|+.+.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 21 IEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 55678889999987765321111 123347999999875
No 306
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.82 E-value=1.2e+02 Score=23.21 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=25.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HH----HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VE----ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~----~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.++..+... .. .+....+||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 21 LSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 457788899999888654322 11 123347999999864
No 307
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=44.79 E-value=67 Score=27.47 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=27.1
Q ss_pred HHHHHHhCCCeEEEEeC-C-CCCHHHH-------hccCCCeEEECCCCCCCCCcch
Q 029484 3 FLKYMGELGYHFEVYRN-D-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGI 49 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~-~-~~~~~~~-------~~~~~dglii~GG~~~~~~~~~ 49 (192)
+.+.|++.|+++.++.- . +.+.+.+ ...++|.||-.|| |++.|..+
T Consensus 43 v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~AK 97 (414)
T cd08190 43 VLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGG-GSVIDTAK 97 (414)
T ss_pred HHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 45567778888877631 1 2223322 2236889988888 66655443
No 308
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=44.78 E-value=73 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=22.6
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchh
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~ 50 (192)
+.+.|+..|.++.++... +.+.+.+ ...++|.||-.|| |++.|..+.
T Consensus 43 v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 43 VIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred HHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 445566666666554311 1222221 1225677776666 555444433
No 309
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.17 E-value=1.2e+02 Score=23.37 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.........+ +...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 21 MKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 456788899999887643211111 22348999999753
No 310
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=44.13 E-value=17 Score=33.83 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=31.2
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+.+....+ +.++|++|| |.||.-...
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln 536 (762)
T cd00764 474 FQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN 536 (762)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH
Confidence 4555899999999987654333332222222 256888876 888876555
No 311
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=43.99 E-value=30 Score=26.96 Aligned_cols=43 Identities=26% Similarity=0.549 Sum_probs=28.8
Q ss_pred CCCeEEECCCCCCCCCc--chhHHHHHHhCCCCCEEeeeHhHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~--~~~~~~~~~~~~~~PilGIC~G~Q~l~ 74 (192)
+.|.|+++=|||+..-- +.....=..+..++|++|||- +.+++
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss-L~~~A 102 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS-LEALA 102 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH-HHHHH
Confidence 68899999999997432 222222244678999999984 33443
No 312
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=43.81 E-value=90 Score=20.32 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=26.7
Q ss_pred eEEEEEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 134 LEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 134 ~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
..+.+++.++.|...-..++. +..+.++|+..
T Consensus 21 ~~~~~~s~~g~V~V~v~g~g~-v~~i~i~~~~~ 52 (93)
T PF02575_consen 21 IEVTGTSGDGLVTVTVNGNGE-VVDIEIDPSAL 52 (93)
T ss_dssp SEEEEEETCCTEEEEEETTS--EEEEEE-GGGG
T ss_pred CEEEEEECCCEEEEEEecCce-EEEEEEehHhh
Confidence 567889999999998888875 99999999997
No 313
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=43.77 E-value=1.5e+02 Score=22.76 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..+.. .+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 21 VEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 45677888999988764322221 223347999999875
No 314
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=43.75 E-value=83 Score=20.32 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHHHhCCCeEE-EEe-CCCCC---HHHHhccCCCeEEECCCC-CC-CCCcchhHHHHHHhCCCCCEE
Q 029484 4 LKYMGELGYHFE-VYR-NDELT---VEELKRKNPRGVLISPGP-GA-PQDSGISLQTVLELGPTVPLF 64 (192)
Q Consensus 4 ~~~l~~~g~~~~-v~~-~~~~~---~~~~~~~~~dglii~GG~-~~-~~~~~~~~~~~~~~~~~~Pil 64 (192)
.++|++.|+++. .++ ..+.. .+.+...++|.||....+ +. ...++..++.. +.+.++|++
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~-A~~~~Ip~~ 89 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRA-AENIDIPGA 89 (90)
T ss_pred HHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHH-HHHcCCCee
Confidence 578899999875 332 11111 122344489999998764 32 22223332221 234567764
No 315
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=42.88 E-value=1.4e+02 Score=23.12 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=25.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHH-----HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEE-----LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~-----~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+... ..+ +....+||||+.+.
T Consensus 21 i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 21 IEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 567788899999998754221 111 22237999999964
No 316
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=42.87 E-value=1.4e+02 Score=23.08 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+.+.+......+.+ .+...++||+|+.+.
T Consensus 20 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 20 VKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45677889999988732211211 233348999999863
No 317
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=42.82 E-value=16 Score=30.31 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=27.7
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 76 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~~ 76 (192)
+...++|++|+.||.++......+ .+ .++|++|| |.||.-.+..
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L----~~--~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~ 146 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRL----AD--KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI 146 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHH----Hh--cCCCEEeeccccCCCCcCCccCcCHHHHHHH
Confidence 444589999999998875322221 11 23555554 8888877663
No 318
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=42.80 E-value=1e+02 Score=23.75 Aligned_cols=38 Identities=5% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHHHHHh-CCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGE-LGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++ .|+++.+...+.....+ +...++||+|+.+.
T Consensus 21 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 21 MKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5567788 89999887543222111 22348999999864
No 319
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=42.74 E-value=22 Score=25.33 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=28.6
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---hHHHHHHhCCCCCEEeeeH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---SLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~~~~~~~~~~~~PilGIC~ 68 (192)
++.|.+.+..+.+.... ....++. +||.||+.++--....... +++.....-.++|+.-++-
T Consensus 19 a~~l~~~~~~v~~~~~~-~~~~~~~--~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~ 83 (143)
T PF12724_consen 19 AEKLGEEGELVDLEKVE-EDEPDLS--DYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALFSV 83 (143)
T ss_pred HHHHhhhccEEEHHhhh-hcccccc--cCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 34444444444444421 1122333 8898877655332222332 3333333335677655543
No 320
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=42.59 E-value=1.3e+02 Score=22.98 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-----HHH-hccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV-----EEL-KRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~-----~~~-~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...++... .++ ...++||+|+.+.
T Consensus 25 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 25 LSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred HHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 5567888999998886542211 112 2236999999865
No 321
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=42.43 E-value=67 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=20.0
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHH---hCCCCCEEee
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLE---LGPTVPLFGV 66 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~---~~~~~PilGI 66 (192)
++|.||-.|| |+..|....+..+.. ..+++|++.|
T Consensus 78 ~~d~IiaiGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~V 115 (332)
T cd08180 78 KPDIVIALGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAI 115 (332)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHhCCCCCCCCCEEEe
Confidence 6888887777 666555544333221 2344666654
No 322
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=42.35 E-value=1.1e+02 Score=24.40 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+....+||||+.+.
T Consensus 20 i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 20 FVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 56778889999988765322211 122337999999863
No 323
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=42.34 E-value=1.6e+02 Score=23.82 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||+|+.++
T Consensus 81 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 81 VEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45667788999888764322211 122337999999875
No 324
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.32 E-value=61 Score=24.64 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----ccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dglii~GG 40 (192)
+..+|+..|+++...-. +.+.+++. ..++|.|.+|..
T Consensus 102 v~~~l~~~G~~vi~lG~-~~p~~~l~~~~~~~~~d~v~lS~~ 142 (201)
T cd02070 102 VATMLEANGFEVIDLGR-DVPPEEFVEAVKEHKPDILGLSAL 142 (201)
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEecc
Confidence 45678999999987765 36666653 348999988864
No 325
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=42.11 E-value=32 Score=30.15 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHhCCCeEEEEeCCCCC-HHH----HhccCCCeEEECCCCCCC
Q 029484 4 LKYMGELGYHFEVYRNDELT-VEE----LKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~-~~~----~~~~~~dglii~GG~~~~ 44 (192)
...|+.+|++++++...... ..+ +...++|+||+.||.|..
T Consensus 136 ~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 136 KPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGIL 181 (481)
T ss_pred HHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHH
Confidence 34788999998877532111 112 222378999999998865
No 326
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=41.78 E-value=25 Score=29.33 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=19.6
Q ss_pred HHHHHHhCCCeEEEEe--CCCCCHHHH-------hccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYR--NDELTVEEL-------KRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~--~~~~~~~~~-------~~~~~dglii~GG 40 (192)
+.+.|++.|.++.++. ..+.+.+++ ...++|.||-.||
T Consensus 41 v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (366)
T PF00465_consen 41 VLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG 87 (366)
T ss_dssp HHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred HHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3445666777776664 112223332 2226677777776
No 327
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=41.71 E-value=1.2e+02 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~-------~~~~~~~~dglii~G 39 (192)
+.+..++.|+++.+....+.+. +.+...++|||++++
T Consensus 45 i~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 45 AKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4567788999998743222222 122334899999974
No 328
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.64 E-value=1.2e+02 Score=23.31 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.... .+.+ .+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 21 VKSKAKALGYDAVELSAE-NSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHhcCCeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 456778899999887543 2221 223348999998764
No 329
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=41.53 E-value=31 Score=28.64 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=16.1
Q ss_pred ceEEEeeCCCCceEEEeccCCCC
Q 029484 144 LIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 144 ~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
+..-|++.. | +++.||||-..
T Consensus 99 ~l~rirf~s-p-v~~~q~hp~k~ 119 (405)
T KOG1273|consen 99 PLKRIRFDS-P-VWGAQWHPRKR 119 (405)
T ss_pred ceeEEEccC-c-cceeeeccccC
Confidence 566677665 5 99999999764
No 330
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.44 E-value=1.1e+02 Score=23.77 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=24.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+...+..+..+ +...++||||+.+
T Consensus 21 i~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 21 ADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 456778899999988654222111 2223799999975
No 331
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=41.12 E-value=44 Score=27.74 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=20.1
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
++|.||-.|| |++.|....+.... ++|++.|.
T Consensus 76 ~~D~iIavGG-Gs~~D~aK~ia~~~----~~p~i~VP 107 (347)
T cd08172 76 GADVIIGIGG-GKVLDTAKAVADRL----GVPVITVP 107 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHh----CCCEEEec
Confidence 6888888877 66655554443332 56776665
No 332
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=41.04 E-value=18 Score=29.66 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=27.6
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe-------------eeHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG-------------IC~G~Q~l~~ 75 (192)
+..+++|++|+.||.++......+-+. .++|++| .|.||.-.+.
T Consensus 87 l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~ 143 (301)
T TIGR02482 87 LKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALN 143 (301)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHH
Confidence 455589999999998765333222111 2355555 4899987655
No 333
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=40.83 E-value=60 Score=26.06 Aligned_cols=74 Identities=11% Similarity=0.337 Sum_probs=45.7
Q ss_pred cHHHHHHhCCCe-EEEE--eC-CCCCHHHHhc--cCCCeEEECCCCCCCC----CcchhHHHHHH-hCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYH-FEVY--RN-DELTVEELKR--KNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~-~~v~--~~-~~~~~~~~~~--~~~dglii~GG~~~~~----~~~~~~~~~~~-~~~~~PilGIC~G~ 70 (192)
|..+.++..|++ +.++ +. .+.+..++.. .+.+||+++||..... .+.++++.+++ +.+++-+-|.-.|.
T Consensus 71 ~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGA 150 (293)
T COG4242 71 NYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGA 150 (293)
T ss_pred chhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccch
Confidence 445667777773 3333 22 1222222221 2899999999976542 23356666765 56789999999998
Q ss_pred HHHHH
Q 029484 71 QCIGE 75 (192)
Q Consensus 71 Q~l~~ 75 (192)
-+|.-
T Consensus 151 avM~~ 155 (293)
T COG4242 151 AVMSD 155 (293)
T ss_pred hhcCC
Confidence 88765
No 334
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.75 E-value=44 Score=22.56 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+++++.|.++++........++.. .++|.+++++
T Consensus 20 m~~~a~~~gi~~~i~a~~~~e~~~~~-~~~Dvill~P 55 (99)
T cd05565 20 LNKGAKERGVPLEAAAGAYGSHYDMI-PDYDLVILAP 55 (99)
T ss_pred HHHHHHHCCCcEEEEEeeHHHHHHhc-cCCCEEEEcC
Confidence 45788899999988876432222222 2788666665
No 335
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=40.58 E-value=64 Score=26.75 Aligned_cols=19 Identities=11% Similarity=0.066 Sum_probs=11.1
Q ss_pred CCCeEEECCCCCCCCCcchh
Q 029484 31 NPRGVLISPGPGAPQDSGIS 50 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~ 50 (192)
++|.||-.|| |++.|....
T Consensus 80 ~~d~IIaIGG-Gs~~D~aK~ 98 (348)
T cd08175 80 DTDLIIAVGS-GTINDITKY 98 (348)
T ss_pred cCCEEEEECC-cHHHHHHHH
Confidence 5677777766 555444433
No 336
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=40.34 E-value=1.5e+02 Score=27.31 Aligned_cols=41 Identities=20% Similarity=0.038 Sum_probs=26.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc-------cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR-------KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~-------~~~dglii~GG~~~ 43 (192)
|..++++.|+++.....-..+.+++.. .++|.||++||.+.
T Consensus 214 L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts~ 261 (659)
T PLN02699 214 LLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVSM 261 (659)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 667899999988765432233333321 15899999998554
No 337
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.24 E-value=42 Score=22.36 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=24.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
.+.+++++.|+++++........++.. .++|.+++++
T Consensus 22 k~~~~~~~~gi~~~v~a~~~~~~~~~~-~~~Dvill~p 58 (95)
T TIGR00853 22 KMNKAAEEYGVPVKIAAGSYGAAGEKL-DDADVVLLAP 58 (95)
T ss_pred HHHHHHHHCCCcEEEEEecHHHHHhhc-CCCCEEEECc
Confidence 356788999999988876422222222 3789777775
No 338
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=40.20 E-value=53 Score=27.34 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=8.1
Q ss_pred CCCeEEECCCCCCCCCc
Q 029484 31 NPRGVLISPGPGAPQDS 47 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~ 47 (192)
+.|.||-.|| |++.|.
T Consensus 87 ~~d~IIaiGG-Gsv~D~ 102 (350)
T PRK00843 87 NAGFLIGVGG-GKVIDV 102 (350)
T ss_pred CCCEEEEeCC-chHHHH
Confidence 4566665555 444333
No 339
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.03 E-value=1.4e+02 Score=21.33 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc----cCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dglii~GG~~ 42 (192)
+...|+..|+++...-.+ .+.+++.. .++|.|.+|--.+
T Consensus 23 v~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS~~~~ 65 (137)
T PRK02261 23 LDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVSSLYG 65 (137)
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCccc
Confidence 456789999999999864 66666533 3789999886433
No 340
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.93 E-value=1.2e+02 Score=23.31 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.... .+.+ .+...++||+|+.+.
T Consensus 22 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 22 FQAAAEEDGVEVIVLDAN-GDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred HHHHHHhcCCEEEEEcCC-cCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 456677899999887643 2221 123347999999764
No 341
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.82 E-value=68 Score=21.24 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=23.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISP 39 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~G 39 (192)
++-+.+++.|.++++...+ ..++.. .++|.++.+.
T Consensus 22 ki~~~l~~~gi~~~v~~~~---~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 22 EIKELCQSHNIPVELIQCR---VNEIETYMDGVHLICTTA 58 (94)
T ss_pred HHHHHHHHCCCeEEEEEec---HHHHhhhcCCCCEEEECC
Confidence 4567889999999988854 333332 4788665554
No 342
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=39.79 E-value=1.3e+02 Score=22.88 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=26.6
Q ss_pred HHHHHHhCCCe---EE--EEeCCCCC--HHHHhc----cCCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYH---FE--VYRNDELT--VEELKR----KNPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~---~~--v~~~~~~~--~~~~~~----~~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|.+++++.|.+ +. +++ |+.. .+.+.. .++|.||.+||-|- .+.+...+.++.
T Consensus 28 L~~~L~~~G~~g~~v~~~iVp-Dd~~~I~~aL~~a~~~~~~DlIITTGGtg~-g~rDvTpeAv~~ 90 (193)
T PRK09417 28 LEEWLASALTSPFEIETRLIP-DEQDLIEQTLIELVDEMGCDLVLTTGGTGP-ARRDVTPEATLA 90 (193)
T ss_pred HHHHHHHcCCCCceEEEEECC-CCHHHHHHHHHHHhhcCCCCEEEECCCCCC-CCCCcHHHHHHH
Confidence 56788888653 32 333 2222 111222 25899999998554 333333344443
No 343
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.57 E-value=98 Score=24.27 Aligned_cols=37 Identities=8% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.... .+.+ .+...++||+|+.+.
T Consensus 22 i~~~a~~~gy~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 22 VREAAKAIGWNLRILDGR-GSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHcCcEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 457788899998877543 2222 122348999999863
No 344
>PRK13057 putative lipid kinase; Reviewed
Probab=39.54 E-value=1.1e+02 Score=24.47 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHHH---hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEEL---KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~~---~~~~~dglii~GG~~~~ 44 (192)
+.+.|++.|.++.+....... ..++ ...++|.||+.||.|..
T Consensus 18 i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv 63 (287)
T PRK13057 18 ARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTL 63 (287)
T ss_pred HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHH
Confidence 567889999998777642111 1121 12268999999997754
No 345
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=39.52 E-value=98 Score=27.00 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=26.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCH---------HH----------HhccCCCeEEECCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTV---------EE----------LKRKNPRGVLISPGP 41 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~---------~~----------~~~~~~dglii~GG~ 41 (192)
+++++|.+.|+.+.+..-...+. +. .+...+|.||+++|-
T Consensus 21 a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 21 AAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred HHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCC
Confidence 57899999999999987433330 11 011247899999873
No 346
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.42 E-value=1.7e+02 Score=22.38 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+++++.|+++.+........ +.+....+||+|+.+.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 22 AQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4567888999998887542221 1233347999999873
No 347
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=39.06 E-value=97 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=11.3
Q ss_pred CCCeEEECCCCCCCCCcch
Q 029484 31 NPRGVLISPGPGAPQDSGI 49 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~ 49 (192)
++|.||-.|| |++.|..+
T Consensus 85 ~~d~IIaiGG-GsviD~AK 102 (377)
T cd08188 85 GCDVIIAVGG-GSPIDCAK 102 (377)
T ss_pred CCCEEEEeCC-chHHHHHH
Confidence 6777777776 55555443
No 348
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=39.03 E-value=22 Score=34.94 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=31.2
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe---------------eeHhHHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA 76 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG---------------IC~G~Q~l~~~ 76 (192)
+..++.|++|+.||.++......+.+...+.+..++|+| .|.||.-.+..
T Consensus 192 lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~ 256 (1328)
T PTZ00468 192 CEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256 (1328)
T ss_pred HHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHH
Confidence 445589999999998876544443333332223344444 48999877763
No 349
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=38.79 E-value=60 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCCeEEECC-CCCCCCCcchhHHHHHH-hCCCCCEEee
Q 029484 31 NPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 66 (192)
Q Consensus 31 ~~dglii~G-G~~~~~~~~~~~~~~~~-~~~~~PilGI 66 (192)
.++||||-| |.|+......+.+.+.+ .++++||.=+
T Consensus 233 ~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 233 PVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEe
Confidence 589999998 77776544556666665 5678898765
No 350
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=38.59 E-value=64 Score=26.65 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEEeCCC---CCHHHH-------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDE---LTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~---~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|++.|.++.++.... .+.+.+ .. +.|.||-.|| |++.|...++. +.+++|++-|.
T Consensus 43 i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~aK~iA----~~~gip~I~VP 111 (332)
T cd08549 43 IIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLVKFVS----FKVGKPFISVP 111 (332)
T ss_pred HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHHHHHH----HHcCCCEEEeC
Confidence 3456677777666543211 122222 12 6788888877 66655554444 22467777766
No 351
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.29 E-value=33 Score=24.39 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----------------HHHHhc--cCCCeEEECCCCCCCCCcchhHHH-HHH------
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----------------VEELKR--KNPRGVLISPGPGAPQDSGISLQT-VLE------ 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----------------~~~~~~--~~~dglii~GG~~~~~~~~~~~~~-~~~------ 56 (192)
+.+.+++.|+++++++..+.+ ..++.. ...|++|+. .|-........++. +..
T Consensus 23 ~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~-sP~y~~~~s~~lK~~lD~~~~~~~ 101 (152)
T PF03358_consen 23 VAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA-SPVYNGSVSGQLKNFLDRLSCWFR 101 (152)
T ss_dssp HHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE-EEEBTTBE-HHHHHHHHTHHHTHT
T ss_pred HHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe-ecEEcCcCChhhhHHHHHhccccc
Confidence 456677789999999876531 011111 168888886 33333332222222 221
Q ss_pred -hCCCCCEEeeeHh
Q 029484 57 -LGPTVPLFGVCMG 69 (192)
Q Consensus 57 -~~~~~PilGIC~G 69 (192)
.-+++|++.|+.|
T Consensus 102 ~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 102 RALRGKPVAIIAVG 115 (152)
T ss_dssp TTTTTSEEEEEEEE
T ss_pred cccCCCEEEEEEEe
Confidence 2368888888643
No 352
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.09 E-value=1.8e+02 Score=22.27 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+.... +.+....+||+|+.+-
T Consensus 21 i~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 21 VEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5677888999998886432221 1123347999999863
No 353
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.73 E-value=48 Score=22.02 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|.++++........++ ...++|.|++++-
T Consensus 19 i~~~~~~~~~~~~v~~~~~~~~~~-~~~~~Diil~~Pq 55 (96)
T cd05564 19 MKKAAEKRGIDAEIEAVPESELEE-YIDDADVVLLGPQ 55 (96)
T ss_pred HHHHHHHCCCceEEEEecHHHHHH-hcCCCCEEEEChh
Confidence 567889999998888764222222 2237898888763
No 354
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=37.69 E-value=63 Score=26.06 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=27.6
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.|++.|.++++..... ....++ ...++|.||+.||.|..
T Consensus 19 ~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi 65 (293)
T TIGR03702 19 AVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTL 65 (293)
T ss_pred HHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHH
Confidence 4567899999987765321 222222 22368999999998865
No 355
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=37.24 E-value=75 Score=26.32 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=19.4
Q ss_pred CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 33 RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 33 dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
|.||-.|| |++.|...+.... ..+++|++.|.-
T Consensus 83 d~IIavGG-Gsv~D~aK~iA~~--~~~~~p~i~VPT 115 (344)
T TIGR01357 83 STIIALGG-GVVGDLAGFVAAT--YMRGIRFIQVPT 115 (344)
T ss_pred CEEEEEcC-hHHHHHHHHHHHH--HccCCCEEEecC
Confidence 67777777 6665555444332 235677777664
No 356
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=37.21 E-value=21 Score=28.69 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=23.8
Q ss_pred CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 33 RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 33 dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
.|||+++|.......-..++.+|+++...||==+
T Consensus 2 rGIVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~ 35 (271)
T PF11051_consen 2 RGIVITAGDKYLWLALRLIRVLRRLGNTLPIEII 35 (271)
T ss_pred CEEEEEecCccHHHHHHHHHHHHHhCCCCCEEEE
Confidence 5899999874443334566777888889997543
No 357
>PRK13055 putative lipid kinase; Reviewed
Probab=37.20 E-value=71 Score=26.40 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHHHHHhCCCeEEEEeCCC--CCHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE--LTVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~--~~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.|++.|.+++++.... ....++ ...++|.||+.||.|..
T Consensus 25 i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 25 ILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred HHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 4677889999887653321 122222 22368999999998864
No 358
>PRK15029 arginine decarboxylase; Provisional
Probab=37.01 E-value=99 Score=28.93 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=39.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc-cCCCeEEECCCCCCCCCcc-----hhHHHHHHhCCCCCEEeee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~~~~~-----~~~~~~~~~~~~~PilGIC 67 (192)
.|.+.|+..|+++..+...+.....+.. .++|.+|+-= ..+...+ .+++.+++...++||+-+.
T Consensus 23 ~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~--~LPd~dG~~~~~ell~~IR~~~~~iPIIlLT 92 (755)
T PRK15029 23 RLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSY--QMEHPDEHQNVRQLIGKLHERQQNVPVFLLG 92 (755)
T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEEC--CCCCCccchhHHHHHHHHHhhCCCCCEEEEE
Confidence 3678889999999888643222333333 3689888852 2233323 4566676655678888775
No 359
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.75 E-value=1.5e+02 Score=21.19 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=26.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----ccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dglii~G 39 (192)
+...|++.|++|.-.-.+ .+.+++. ..++|.|-+|.
T Consensus 21 v~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 21 LDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEec
Confidence 456789999999999875 5656542 33788888875
No 360
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=36.59 E-value=79 Score=27.20 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=35.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC~G~Q~l~~ 75 (192)
|++++|-. |.+|=++.+.+....++.. |.-+..|+- .+.+.++.++.++-++|+|.|--+...
T Consensus 121 S~V~~Ll~-g~dVYl~DW~~p~~vp~~~----------~~f~ldDYi~~l~~~i~~~G~~v~l~GvCqgG~~~la 184 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWVNARMVPLSA----------GKFDLEDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLA 184 (406)
T ss_pred HHHHHHhC-CCcEEEEeCCCCCCCchhc----------CCCCHHHHHHHHHHHHHHhCCCCcEEEEchhhHHHHH
Confidence 56777777 8877777754222111111 111111211 123445557777999999999887544
No 361
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=36.57 E-value=1.2e+02 Score=24.33 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=33.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc-cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 65 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG 65 (192)
.+.++|++.|.++..+..+..-...+.. .++|.++..- .|...+.+. ++.+.+. .++|++|
T Consensus 23 ~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~-~g~~ge~~~-~~~~le~-~gip~~G 84 (299)
T PRK14571 23 RVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVL-HGTFGEDGT-LQAILDF-LGIRYTG 84 (299)
T ss_pred HHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeC-CCCCCCccH-HHHHHHH-cCCCccC
Confidence 4678899999999999754221222222 2578666543 232323332 2333332 3577776
No 362
>PRK13054 lipid kinase; Reviewed
Probab=36.47 E-value=72 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=27.3
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.|++.|.++++..... ....++ ...++|.||+.||.|+.
T Consensus 23 ~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 23 AVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred HHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 4567889999887765321 222222 12368999999998865
No 363
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=36.28 E-value=1.1e+02 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHHHhCCCeEE-EEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dglii~G 39 (192)
|.+.++..|.+++ +.+..+.........++|.+|+..
T Consensus 21 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs 58 (140)
T TIGR01754 21 IQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGT 58 (140)
T ss_pred HHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEc
Confidence 4556667788876 333221111111112678776654
No 364
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=36.09 E-value=1.7e+02 Score=22.17 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=13.1
Q ss_pred cHHHHHHhCCCeEEEEeCC
Q 029484 2 TFLKYMGELGYHFEVYRND 20 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~ 20 (192)
.+.++|++.+..++++...
T Consensus 10 ~~~~~l~~~~~~~~~~~~~ 28 (286)
T PF04230_consen 10 ALLKLLKKHGPDAEIIIFS 28 (286)
T ss_pred HHHHHHHhcCCceEEEEeC
Confidence 4677888888766666543
No 365
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=35.97 E-value=2.3e+02 Score=22.67 Aligned_cols=38 Identities=13% Similarity=0.285 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....+.... .+....+||+|+.+.
T Consensus 83 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 83 LERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45667889999988764322211 123347999999864
No 366
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.72 E-value=1.7e+02 Score=22.42 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+++++.|+++.+.... ..+.+ .+...++||+|+.+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 21 AEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 456788899999988531 11221 122337999999864
No 367
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.60 E-value=82 Score=24.87 Aligned_cols=61 Identities=8% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHhCCCeEEEEeC-C--------CCCHHHH-------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRN-D--------ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~-~--------~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+++++.|++|..+.. . ..+.+.+ ...+.|+|++++..... -.+++.+++ .-++||+-.
T Consensus 137 ~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt---~~vi~~lE~-~lGkPVlsS 212 (239)
T TIGR02990 137 MAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRA---ATCAQRIEQ-AIGKPVVTS 212 (239)
T ss_pred HHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh---HHHHHHHHH-HHCCCEEEH
Confidence 56788999998877632 1 1222222 12268889998653221 112222221 247899875
Q ss_pred e
Q 029484 67 C 67 (192)
Q Consensus 67 C 67 (192)
-
T Consensus 213 N 213 (239)
T TIGR02990 213 N 213 (239)
T ss_pred H
Confidence 4
No 368
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=35.46 E-value=1.2e+02 Score=25.30 Aligned_cols=48 Identities=25% Similarity=0.400 Sum_probs=26.5
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCHHHH-------hccCCCeEEECCCCCCCCCcchhH
Q 029484 3 FLKYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISL 51 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~~~~-------~~~~~dglii~GG~~~~~~~~~~~ 51 (192)
+.+.+++.|.++.++... +.+.+.+ ...++|.||-.|| |+..|....+
T Consensus 40 ~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~i 96 (367)
T cd08182 40 LTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAKAL 96 (367)
T ss_pred HHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHHH
Confidence 345677778777665321 1122222 2236888888887 6665554443
No 369
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.30 E-value=47 Score=21.28 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=25.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
.+.+.+++.|+++.+........+... .++|.+++++-
T Consensus 19 ~i~~~~~~~gi~~~~~~~~~~~~~~~~-~~~D~il~~~~ 56 (90)
T PF02302_consen 19 KIKKALKELGIEVEVSAGSILEVEEIA-DDADLILLTPQ 56 (90)
T ss_dssp HHHHHHHHTTECEEEEEEETTTHHHHH-TT-SEEEEEES
T ss_pred HHHHHHHhccCceEEEEeccccccccc-CCCcEEEEcCc
Confidence 466889999998888875422333333 36999998864
No 370
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=35.27 E-value=86 Score=26.17 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=16.9
Q ss_pred CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 33 RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 33 dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
|.||-.|| |++.|...+.... +.+++|++.|-
T Consensus 94 d~IIavGG-Gsv~D~aK~iA~~--~~~gip~i~IP 125 (358)
T PRK00002 94 DTLIALGG-GVIGDLAGFAAAT--YMRGIRFIQVP 125 (358)
T ss_pred CEEEEEcC-cHHHHHHHHHHHH--hcCCCCEEEcC
Confidence 77777766 5555544443322 23456665554
No 371
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.23 E-value=1.3e+02 Score=23.21 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=21.3
Q ss_pred HHHHHHhC---CCe--EEEEeCCCCCHHH-------HhccCCCeEEECCC
Q 029484 3 FLKYMGEL---GYH--FEVYRNDELTVEE-------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~---g~~--~~v~~~~~~~~~~-------~~~~~~dglii~GG 40 (192)
+.+.+++. |.. +.+...+ .+.+. +...++||||+.+.
T Consensus 21 i~~~~~~~~~~g~~~~l~i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 21 FKAQAKELKKAGLISEFIVTSAD-GDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHhhhccCCeeEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44667777 884 4554432 22121 22238999999874
No 372
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.22 E-value=2.1e+02 Score=22.40 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=22.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~G 39 (192)
+.+.+++.|+++.++.....+.+ .+...++||+|+.+
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 45678889999985522222222 12233799999975
No 373
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=35.22 E-value=97 Score=25.69 Aligned_cols=33 Identities=9% Similarity=0.039 Sum_probs=20.6
Q ss_pred CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 33 RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 33 dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
|.||-.|| |+..|...+.... +.+++|++-|.-
T Consensus 87 d~IIaiGG-Gsv~D~ak~vA~~--~~rgip~i~VPT 119 (345)
T cd08195 87 SLIIALGG-GVVGDLAGFVAAT--YMRGIDFIQIPT 119 (345)
T ss_pred CeEEEECC-hHHHhHHHHHHHH--HhcCCCeEEcch
Confidence 77777777 6666655554433 235678777764
No 374
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=34.99 E-value=8.1 Score=26.71 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=38.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc-cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+|.+.|++.|.++......+.-..-+.. .+++++|++=-...-.....+++.+++.+.++||+-+.-
T Consensus 8 ~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~ 75 (115)
T PF03709_consen 8 ELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEES
T ss_pred HHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEec
Confidence 4678888899999888642111111221 267889988320000011235677777889999997653
No 375
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.91 E-value=91 Score=22.10 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=27.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~ 41 (192)
+..+|+..|++|.....+ .+.++. ...+.|.+.+++-.
T Consensus 22 v~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 22 IATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch
Confidence 356789999999999865 444443 33489999998643
No 376
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=34.89 E-value=2.1e+02 Score=22.00 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=23.0
Q ss_pred HHHHHHhC-CCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGEL-GYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++. |+++.+.........+ +...++||+|+.+.
T Consensus 21 i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 21 IQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 44566765 8999887543222111 22337999999864
No 377
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=34.72 E-value=76 Score=21.88 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCC--CHHHHhc-cCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDEL--TVEELKR-KNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--~~~~~~~-~~~dglii~G 39 (192)
++.++++.|+.+........ ..+++.. .++|.|.++.
T Consensus 8 ~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~ 47 (127)
T cd02068 8 LAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISL 47 (127)
T ss_pred HHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEee
Confidence 56788999988877764311 1334444 5899999985
No 378
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=34.69 E-value=2.1e+02 Score=21.82 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|.++.+......+.. .+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 21 IEKAALKHGYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45678889999988865322221 123347999999864
No 379
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=34.49 E-value=50 Score=25.05 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=15.2
Q ss_pred CCCCCEEeeeHhHHHHHHHh
Q 029484 58 GPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 58 ~~~~PilGIC~G~Q~l~~~~ 77 (192)
..+++++|+|-|.|.+...+
T Consensus 158 ~~~~k~vGlCh~~~~~~~~l 177 (183)
T PF02056_consen 158 TPKIKVVGLCHGPQGTRRQL 177 (183)
T ss_dssp STTSEEEEE-SHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHH
Confidence 35699999999999887653
No 380
>PF13941 MutL: MutL protein
Probab=34.48 E-value=1.6e+02 Score=25.81 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=34.2
Q ss_pred HHHhCCCeEEEEeCCCCCHH---HHhccCCCeEEECCCCCCCCCcchh--HHHHHHhCCCCCEEe
Q 029484 6 YMGELGYHFEVYRNDELTVE---ELKRKNPRGVLISPGPGAPQDSGIS--LQTVLELGPTVPLFG 65 (192)
Q Consensus 6 ~l~~~g~~~~v~~~~~~~~~---~~~~~~~dglii~GG~~~~~~~~~~--~~~~~~~~~~~PilG 65 (192)
+...+|+.+..+-..+.+.. ++...++|.|+|.||--.-....-. -+.+....-+.||+=
T Consensus 96 AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIy 160 (457)
T PF13941_consen 96 AALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIY 160 (457)
T ss_pred HHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEE
Confidence 34457888876654445544 4565689999999995433222211 123333455677543
No 381
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.41 E-value=66 Score=26.06 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.|++.|.++.++..... ...++ ....+|.||+.||.|..
T Consensus 31 ~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 31 AIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred HHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 56778899998877653211 11122 22368999999998865
No 382
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=34.14 E-value=87 Score=21.86 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH--HHhccCCCeEEE
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE--ELKRKNPRGVLI 37 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~--~~~~~~~dglii 37 (192)
|.+.+++.|+++.++..++.+.. ++. +.+.+++
T Consensus 17 ia~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~~i~ 51 (143)
T PF00258_consen 17 IAEGLRERGVEVRVVDLDDFDDSPSDLS--EYDLLIF 51 (143)
T ss_dssp HHHHHHHTTSEEEEEEGGGSCHHHHHHC--TTSEEEE
T ss_pred HHHHHHHcCCceeeechhhhhhhhhhhh--hhceeeE
Confidence 67788899999999998777743 555 5555554
No 383
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=34.02 E-value=1.3e+02 Score=23.40 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=24.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+ .+..+ +...++||||+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 21 AKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 457788899999887553 22111 22237999999863
No 384
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.84 E-value=1.7e+02 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.557 Sum_probs=16.4
Q ss_pred CcHHHHHHhCCCeEEEEeC
Q 029484 1 MTFLKYMGELGYHFEVYRN 19 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~ 19 (192)
|+++++|.+.|++|.....
T Consensus 19 ~s~a~~L~~~G~~v~~~D~ 37 (448)
T PRK03803 19 LSVVRFLARQGIPFAVMDS 37 (448)
T ss_pred HHHHHHHHhCCCeEEEEeC
Confidence 5789999999999988874
No 385
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=33.72 E-value=93 Score=25.47 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
++|.||-.|| |+..|........ +.+++|++.|.
T Consensus 78 ~~d~IIaiGG-Gs~~D~aK~ia~~--~~~~~p~i~iP 111 (332)
T cd07766 78 EVDAVIAVGG-GSTLDTAKAVAAL--LNRGLPIIIVP 111 (332)
T ss_pred CcCEEEEeCC-chHHHHHHHHHHH--hcCCCCEEEEe
Confidence 6788887777 6655555444333 22467877765
No 386
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.32 E-value=91 Score=21.23 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=32.6
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhcc-CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
...+...|..+......+.-...+... +-|.+|+..-+|...+.-...+.. .+++.|+++|+-
T Consensus 19 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a--~~~g~~vi~iT~ 82 (128)
T cd05014 19 AATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHL--KRRGAPIIAITG 82 (128)
T ss_pred HHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHH--HHCCCeEEEEeC
Confidence 445566788887764211111111111 346677776555443333333332 346799999984
No 387
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=33.29 E-value=1.9e+02 Score=22.39 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|+.+.+...+. . .......+||+|+.+
T Consensus 26 i~~~~~~~g~~~~~~~~~~-~-~~~~~~~vdgii~~~ 60 (270)
T cd01544 26 IEKRAQELGIELTKFFRDD-D-LLEILEDVDGIIAIG 60 (270)
T ss_pred HHHHHHHcCCEEEEEeccc-h-hHHhccCcCEEEEec
Confidence 4577888999999887532 2 222335899999975
No 388
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=33.23 E-value=1.9e+02 Score=23.32 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=23.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC-HHHHhccCCCeEEE
Q 029484 2 TFLKYMGELGYHFEVYRNDELT-VEELKRKNPRGVLI 37 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~-~~~~~~~~~dglii 37 (192)
++.++|++.|.++..+..+... ...+...++|.++.
T Consensus 26 ~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 26 AVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred HHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 4678999999999888643211 23444456786555
No 389
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=33.11 E-value=1.7e+02 Score=22.49 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=25.5
Q ss_pred cHHHHHHhCC-CeEEEEeCCCCCHHHH---hccCCCeEEECCC
Q 029484 2 TFLKYMGELG-YHFEVYRNDELTVEEL---KRKNPRGVLISPG 40 (192)
Q Consensus 2 ~l~~~l~~~g-~~~~v~~~~~~~~~~~---~~~~~dglii~GG 40 (192)
.+.+.+++.| .++.+....+...+++ ....+||+|+.+.
T Consensus 19 ~i~~~l~~~g~~~l~~~~~~~~~~~~~~~~~~~~vdGvIi~~~ 61 (247)
T cd06276 19 SFVNTLGKNAQVDLYFHHYNEDLFKNIISNTKGKYSGYVVMPH 61 (247)
T ss_pred HHHHHHHhcCcEEEEEEcCchHHHHHHHHHHhcCCCEEEEecC
Confidence 4677888899 8888766543112122 1347999999864
No 390
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=32.76 E-value=1.1e+02 Score=25.55 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=11.7
Q ss_pred CCCeEEECCCCCCCCCcchh
Q 029484 31 NPRGVLISPGPGAPQDSGIS 50 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~ 50 (192)
++|.||-.|| |++.|..+.
T Consensus 81 ~~D~IIaiGG-GS~iD~AKa 99 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKA 99 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHH
Confidence 5678887777 555444433
No 391
>PRK03202 6-phosphofructokinase; Provisional
Probab=32.75 E-value=20 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=12.6
Q ss_pred HhccCCCeEEECCCCCCC
Q 029484 27 LKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~ 44 (192)
+...+.|++|+.||.++.
T Consensus 89 l~~~~Id~Li~IGGd~s~ 106 (320)
T PRK03202 89 LKKLGIDALVVIGGDGSY 106 (320)
T ss_pred HHHcCCCEEEEeCChHHH
Confidence 344578888888886654
No 392
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=32.68 E-value=1.3e+02 Score=21.89 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++.+..+ .+.++.+ .++||+||=+|
T Consensus 35 ~~~~a~~~g~~v~~~QSN--~EGelId~I~~a~~~~dgiiINpg 76 (146)
T PRK05395 35 LEEEAAELGVELEFFQSN--HEGELIDRIHEARDGADGIIINPG 76 (146)
T ss_pred HHHHHHHcCCEEEEEeeC--cHHHHHHHHHhcccCCcEEEECch
Confidence 345567789999999753 2334321 16899999887
No 393
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.66 E-value=1.7e+02 Score=22.34 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 21 LEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677888999877653221111 123337999999874
No 394
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=32.62 E-value=1.6e+02 Score=21.34 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=23.1
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
.+..++.|++++....+ .+.++.+ .++||+||=+|
T Consensus 34 ~~~a~~~g~~v~~~QSN--~EGelId~i~~a~~~~dgiIINpg 74 (141)
T TIGR01088 34 ETFAAQLNVELEFFQSN--SEGQLIDKIHEAEGQYDGIIINPG 74 (141)
T ss_pred HHHHHHcCCEEEEEeeC--cHHHHHHHHHhccccCCEEEEcCh
Confidence 45556779999998753 2333321 15899999887
No 395
>PRK09526 lacI lac repressor; Reviewed
Probab=32.35 E-value=2.7e+02 Score=22.41 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~ 38 (192)
+.+.+++.|+++.+......+.+ .+...++||+|+.
T Consensus 85 i~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 85 IKSRADQLGYSVVISMVERSGVEACQAAVNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 45667889999988764322211 2233479999996
No 396
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.16 E-value=2.3e+02 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHH----hccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEEL----KRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~----~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....... ...+ ....+||+|+.+.
T Consensus 26 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 26 ISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 456788899999877543211 1122 1225999999864
No 397
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=32.10 E-value=1.6e+02 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..... .+...++||+|+.+.
T Consensus 47 i~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 47 FVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677889999998865322211 123348999999863
No 398
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=32.09 E-value=1.4e+02 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHH-H------HhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDE-LTVE-E------LKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~~~-~------~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+...+. .+.+ + +...++||+|+.+
T Consensus 21 i~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 21 MVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred HHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4567788899999876531 1211 1 2334899999985
No 399
>PRK13337 putative lipid kinase; Reviewed
Probab=31.88 E-value=1e+02 Score=25.04 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=27.3
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHHHH----hccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVEEL----KRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~~~----~~~~~dglii~GG~~~~ 44 (192)
+.+.+++.|.++.++... .....++ ....+|.||+.||.|+.
T Consensus 24 ~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 24 VLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred HHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 456788999987766432 2222222 22268999999998865
No 400
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=31.81 E-value=2.2e+02 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....+.. .+.+....+||+|+.+.
T Consensus 24 i~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 24 LERAAKELGIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 457788899999888653211 11233348999999863
No 401
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=31.72 E-value=2.1e+02 Score=23.25 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=42.3
Q ss_pred HHHHHHh--CCCeEEEE---eCCC-CC----HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHH
Q 029484 3 FLKYMGE--LGYHFEVY---RNDE-LT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~--~g~~~~v~---~~~~-~~----~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~ 72 (192)
+.+.+++ .|.++... +... .+ ..++...++|.|++.+.+. +...+.+..++.+-..|+++......-
T Consensus 163 ~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~ 239 (342)
T cd06329 163 FKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVKQAADAGLKLPFYTPYLDQPG 239 (342)
T ss_pred HHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHHHHHHcCCCceEEeccccchh
Confidence 4567788 88887543 2221 22 2234445799999976432 334466666666667888886554443
Q ss_pred HHHHhC
Q 029484 73 IGEAFG 78 (192)
Q Consensus 73 l~~~~g 78 (192)
+...+|
T Consensus 240 ~~~~~g 245 (342)
T cd06329 240 NPAALG 245 (342)
T ss_pred HHHhhc
Confidence 455444
No 402
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=31.64 E-value=37 Score=33.50 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=30.4
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHh-----CCCCCEEee---------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGV---------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-----~~~~PilGI---------------C~G~Q~l~~ 75 (192)
+...+.|++|+.||.++......+-+.+.+. ..++||+|| |+||.-...
T Consensus 796 L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 796 LSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 4445899999999988765444433332221 135666664 788876555
No 403
>PLN02204 diacylglycerol kinase
Probab=31.28 E-value=53 Score=29.72 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=28.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHHH-------hccCCCeEEECCCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEEL-------KRKNPRGVLISPGPGAPQ 45 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~~-------~~~~~dglii~GG~~~~~ 45 (192)
+...|+.+|+++.++...... ..++ ....||+||+.||.|...
T Consensus 182 V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~n 232 (601)
T PLN02204 182 VSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFN 232 (601)
T ss_pred HHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHH
Confidence 566788999987776532111 1111 123799999999988654
No 404
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=31.26 E-value=77 Score=25.37 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=33.3
Q ss_pred HHHHHHhCCCeEEEEeC---------CCCCHHHH-----hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRN---------DELTVEEL-----KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~---------~~~~~~~~-----~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.++-+.+|.++.++-. ...+.++. .....|||+++|..-....+...++.+++... +||| +.-
T Consensus 130 ~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVl-vGS 207 (254)
T PF03437_consen 130 LLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVL-VGS 207 (254)
T ss_pred HHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEE-Eec
Confidence 44555666777555421 12333332 12268999999853222222233444555433 8987 444
Q ss_pred h
Q 029484 69 G 69 (192)
Q Consensus 69 G 69 (192)
|
T Consensus 208 G 208 (254)
T PF03437_consen 208 G 208 (254)
T ss_pred C
Confidence 4
No 405
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=31.25 E-value=78 Score=23.14 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=36.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc---c-hhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G-ISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~---~-~~~~~~~~~~~~~PilGIC 67 (192)
++++|.... .+.++.+.-.-...+....---++++||.-++... + ..++.++++.-++-++|+|
T Consensus 34 la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~ 101 (161)
T PF00455_consen 34 LAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFIGAD 101 (161)
T ss_pred HHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEeccc
Confidence 455565554 56667654222334443333468888886665432 3 2346666676677788766
No 406
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=31.18 E-value=2.4e+02 Score=21.57 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+.+.++..+..+.. .+....+||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 21 VESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 45678889999998764322111 123348999999863
No 407
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=31.02 E-value=2.4e+02 Score=21.55 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|.++.+.........+ +....+||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 21 VEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred HHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 456788899999887643222111 22337999999875
No 408
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.00 E-value=2.4e+02 Score=21.53 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~G 39 (192)
+.+.+++.|+.+.+...+..... .+....+||+|+.+
T Consensus 21 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06285 21 IEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGD 63 (265)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 56778889999877654322211 12334899999985
No 409
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=30.97 E-value=1.6e+02 Score=22.51 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH-------HhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE-------LKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~-------~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+.... .+.++ +...++||+|+.+
T Consensus 21 i~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 21 AQKEAKELGYELTVLDAQ-NDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHcCceEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 556788899999887543 22221 1223799999964
No 410
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.67 E-value=71 Score=29.48 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=32.7
Q ss_pred CcccccccccccccccCCCCCCe----------EEEEEcCCCceEEEeeCCCCceEEEeccCC
Q 029484 112 NPFTAGRYHSLVIEKESFPSDAL----------EVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164 (192)
Q Consensus 112 ~~~~~~~~H~~~v~~~~l~~~~~----------~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE 164 (192)
.++..+..|...|-.-.+..++| +++..+.+..+..|.|.+ ++.++||||-
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd--fVTcVaFnPv 420 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHND--FVTCVAFNPV 420 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCC--eeEEEEeccc
Confidence 45667777876663322332333 333344455688899998 6999999995
No 411
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=30.62 E-value=34 Score=31.84 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=30.5
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEee-------------eHhHHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV-------------CMGLQCIGEA 76 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGI-------------C~G~Q~l~~~ 76 (192)
+..+++|++|+.||.++......+.+....+ +-++|++|| |.||.-.+..
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~ 537 (745)
T TIGR02478 474 FQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNE 537 (745)
T ss_pred HHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHH
Confidence 4455899999999988543333222221111 235777775 8999877663
No 412
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.60 E-value=2.1e+02 Score=25.03 Aligned_cols=19 Identities=11% Similarity=0.308 Sum_probs=15.7
Q ss_pred CcHHHHHHhCCCeEEEEeC
Q 029484 1 MTFLKYMGELGYHFEVYRN 19 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~ 19 (192)
|+++++|...|++|.....
T Consensus 20 ~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 20 LAMARWCARHGARLRVADT 38 (498)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4688999999999888764
No 413
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=30.48 E-value=1.5e+02 Score=24.42 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD 46 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~ 46 (192)
|.+.++++|.+..++..++.+.+.+.+.++|..|+.+=|-...|
T Consensus 234 l~~ll~~~gkk~y~i~~~~in~~kL~nf~iD~fV~~aCPr~sid 277 (308)
T TIGR03682 234 LKKLLEELGKEALLILLDNISPDQLRNLDFDAYVNTACPRIAID 277 (308)
T ss_pred HHHHHHHcCCeEEEEEeCCCCHHHHhcCCcCEEEEccCCCcccc
Confidence 55677889999999998999999998888999999997766543
No 414
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.44 E-value=1.7e+02 Score=23.49 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=35.6
Q ss_pred HHHhCCCeEEEEeCCCCCHHHHh-----ccCCCeEEECCCCCC--CCCcchhHHHHHH--hCCCCCEEeeeHh
Q 029484 6 YMGELGYHFEVYRNDELTVEELK-----RKNPRGVLISPGPGA--PQDSGISLQTVLE--LGPTVPLFGVCMG 69 (192)
Q Consensus 6 ~l~~~g~~~~v~~~~~~~~~~~~-----~~~~dglii~GG~~~--~~~~~~~~~~~~~--~~~~~PilGIC~G 69 (192)
.|.+..+.+..+.+. .=++++. ...+|-||+.|-.|. .-....|.+.|++ .+.++|++--=.|
T Consensus 159 ~L~~~pa~~rflS~E-PLLg~i~l~~~~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 159 ILLETPAKVRFLSCE-PLLGPIDLSKLDLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred HHHhCCccEEEEEec-cccCCcCcccccCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 356666666666541 1122222 225666666653332 2233467777775 5689999876666
No 415
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=30.32 E-value=1.1e+02 Score=25.57 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHhCCCeEEEE--eCCCC--CHHHH-------hccCC----CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVY--RNDEL--TVEEL-------KRKNP----RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~--~~~~~--~~~~~-------~~~~~----dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.++..|.++..+ +..+. +.+.+ ...++ |.||-.|| |+..|...+...+ +.+++|++-|.
T Consensus 45 v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G~v~D~ak~~A~~--~~rg~p~i~VP 121 (354)
T cd08199 45 LREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-GVLTDVAGLAASL--YRRGTPYVRIP 121 (354)
T ss_pred HHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHH--hcCCCCEEEEc
Confidence 456677778877643 32111 22222 12234 88887777 6655555444433 34578887777
Q ss_pred H
Q 029484 68 M 68 (192)
Q Consensus 68 ~ 68 (192)
-
T Consensus 122 T 122 (354)
T cd08199 122 T 122 (354)
T ss_pred C
Confidence 5
No 416
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.30 E-value=1.7e+02 Score=23.86 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 22 LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 22 ~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
.+.+.+...++|.||.+++...........+.+.+ .++|++.+..
T Consensus 82 ~n~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~--~gipvv~~~~ 126 (342)
T cd01139 82 FSVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQ--AGIPVVFVDF 126 (342)
T ss_pred cCHHHHhhcCCCEEEEeccccccchhhHHHHHHHH--cCCcEEEEeC
Confidence 46888888899998887643221112223344433 3589888864
No 417
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=30.17 E-value=1.7e+02 Score=21.41 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++.+..+ .+.++.+ .++||+||=+|
T Consensus 35 ~~~~a~~~g~~~~~~QSN--~EGelId~i~~a~~~~dgiIINpg 76 (146)
T PRK13015 35 CRAAAEALGLEVEFRQSN--HEGELIDWIHEARGDVAGIVINPG 76 (146)
T ss_pred HHHHHHHcCCEEEEEeeC--cHHHHHHHHHHhhhcCCEEEEcch
Confidence 345566789999999753 2333311 15899999876
No 418
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=29.97 E-value=2.6e+02 Score=21.58 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCC-CCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDE-LTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.++..|+++.+..... .+.+ .+...++||||+.+.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 21 MVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4567888999998885421 1111 122348999999864
No 419
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=29.87 E-value=84 Score=26.12 Aligned_cols=38 Identities=26% Similarity=0.157 Sum_probs=27.6
Q ss_pred HHhCCCeEEEEeCCCCC---HHHHhccCCCeEEECCCCCCC
Q 029484 7 MGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 7 l~~~g~~~~v~~~~~~~---~~~~~~~~~dglii~GG~~~~ 44 (192)
-+..++.+.+.+++..+ ..++..+++|-|+|-|||-.+
T Consensus 48 aellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AV 88 (337)
T COG2247 48 AELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAV 88 (337)
T ss_pred HHHhCCeeEecCcccccHHHHHHHHhhCCceEEEECCCCcC
Confidence 34568888877755444 445666799999999998765
No 420
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=29.78 E-value=2.4e+02 Score=21.10 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+++++.|+++.+......+.. .+...++|++|+.+..
T Consensus 21 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 21 IEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 45677889999988875422211 1222379999998643
No 421
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.52 E-value=2.4e+02 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=22.9
Q ss_pred HHHHHHhCCCeEEEE-eCCCCCHH-H------HhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVY-RNDELTVE-E------LKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~-~~~~~~~~-~------~~~~~~dglii~G 39 (192)
+.+.+++.|+++.++ ..+ .+.+ . +...++||+|+.+
T Consensus 21 i~~~a~~~g~~v~~~~~~~-~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 21 AKEAAKELGVDAIYVGPTT-ADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHhCCeEEEECCCC-CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 456778899999875 332 2222 1 2223799999985
No 422
>PRK09701 D-allose transporter subunit; Provisional
Probab=29.19 E-value=2.2e+02 Score=22.76 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=23.5
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.... ..+.+ .+...++||+|+.+.
T Consensus 46 i~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 46 IEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456778889999876321 11211 122337999999874
No 423
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=29.07 E-value=1.8e+02 Score=22.20 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC--CHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....+. ..+.+...++||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 21 INQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred HHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 55677889999888764311 112233348999999863
No 424
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.93 E-value=2e+02 Score=25.26 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHhCCCeEEEEeCCCCC---HHHHhccCCCeEEECCCCCCCCCcchh--HHHHHHhCCCCCEEe
Q 029484 6 YMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGIS--LQTVLELGPTVPLFG 65 (192)
Q Consensus 6 ~l~~~g~~~~v~~~~~~~---~~~~~~~~~dglii~GG~~~~~~~~~~--~~~~~~~~~~~PilG 65 (192)
+...+|+.|..+-..+.. .+++....+|.|++.||--.-....-. -+.+.+..-+.||+=
T Consensus 92 AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIy 156 (463)
T TIGR01319 92 AAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIV 156 (463)
T ss_pred HHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEE
Confidence 344568888664332333 455666689999999994433222211 133445667788763
No 425
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=28.92 E-value=92 Score=23.22 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=24.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHH--hccCCCeEEECC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISP 39 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dglii~G 39 (192)
.|++||+-+|++..+... .+.+++ ...+-|.|||+=
T Consensus 17 ~LARwLRllGydt~~~~~--~~d~~i~~i~~~e~rIllTR 54 (165)
T COG1656 17 KLARWLRLLGYDTVYSSN--ESDDEIILIAKKEGRILLTR 54 (165)
T ss_pred HHHHHHHHcCCceeeecc--CCcHHHHHHHhcCCeEEEec
Confidence 478999999999999863 222333 223567888873
No 426
>PRK10586 putative oxidoreductase; Provisional
Probab=28.75 E-value=95 Score=26.10 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
.+.|++.|+.+..+.- +.+.+++.. .++|.||-.|| |++.|..+.+.. ..++|++.|.
T Consensus 54 ~~~l~~~~~~~~~~~g-~~~~~~v~~l~~~~~~~~d~iiavGG-Gs~iD~aK~~a~----~~~~p~i~vP 117 (362)
T PRK10586 54 PPAFELPGAKHILFRG-HCSESDVAQLAAASGDDRQVVIGVGG-GALLDTAKALAR----RLGLPFVAIP 117 (362)
T ss_pred HHHHHHcCCeEEEeCC-CCCHHHHHHHHHHhccCCCEEEEecC-cHHHHHHHHHHh----hcCCCEEEEe
Confidence 3456677776655532 233333221 14688887777 554444333222 2457777766
No 427
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=28.75 E-value=2.7e+02 Score=23.55 Aligned_cols=37 Identities=5% Similarity=0.194 Sum_probs=25.9
Q ss_pred HHHHHH--hCCCeEEEEeCCCCCHHHHhc--cCCCeEEECC
Q 029484 3 FLKYMG--ELGYHFEVYRNDELTVEELKR--KNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~--~~g~~~~v~~~~~~~~~~~~~--~~~dglii~G 39 (192)
+++-++ ..|+++++.+..+.+.+++.. .++|+||+..
T Consensus 268 ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~Gs 308 (394)
T PRK11921 268 IAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGS 308 (394)
T ss_pred HHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEC
Confidence 455666 678999999887666666542 2688888753
No 428
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.58 E-value=2.1e+02 Score=22.06 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-H------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-E------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-~------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|.++.+...+..+.+ + +...++||+|+.+... ......++.+ .+.++|++-+.
T Consensus 22 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~--~~~~~~l~~~--~~~~ipvV~~~ 89 (271)
T cd06312 22 AEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDP--DALDPAIKRA--VAAGIPVISFN 89 (271)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh--HHhHHHHHHH--HHCCCeEEEeC
Confidence 45677889999988865431222 1 2223799999987421 1111222222 23467776664
No 429
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=28.50 E-value=1.8e+02 Score=19.38 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=27.2
Q ss_pred CCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 20 DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 20 ~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
...+.+++...++|.|+..++.... +.+.+.+. ++|++-+..+
T Consensus 50 ~~~~~E~l~~l~pDlvi~~~~~~~~-----~~~~l~~~--~i~~~~~~~~ 92 (148)
T cd00636 50 YEPNLEKIAALKPDLIIANGSGLEA-----WLDKLSKI--AIPVVVVDEA 92 (148)
T ss_pred CCCCHHHHhccCCCEEEEecccchh-----HHHHHHHh--CCCEEEECCC
Confidence 3566788887899988887653321 33444443 3787777665
No 430
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=28.38 E-value=3.4e+02 Score=22.36 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHHHHhCCCeEEEEe-CCCCCHHHHhcc-CCC-eEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYR-NDELTVEELKRK-NPR-GVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~-~~~~~~~~~~~~-~~d-glii~GG~~ 42 (192)
|.++|++.|++|-++. .+..+.+++..+ .+. +..+++|..
T Consensus 38 IgR~Le~~GyrVgIiaQPdw~~~~df~~lG~PrLff~VsaGn~ 80 (302)
T PF08497_consen 38 IGRVLEAHGYRVGIIAQPDWRSPEDFKRLGRPRLFFGVSAGNM 80 (302)
T ss_pred HHHHHHHcCCeEEEEeCCCCCChHHHHHhCCCcEEEEEccccH
Confidence 5689999999998884 344556666554 555 566777743
No 431
>PRK14071 6-phosphofructokinase; Provisional
Probab=28.11 E-value=32 Score=28.95 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=28.7
Q ss_pred HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEe-------------eeHhHHHHHHH
Q 029484 26 ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 76 (192)
Q Consensus 26 ~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilG-------------IC~G~Q~l~~~ 76 (192)
.+...++|++|+.||.++..-.. .+.+ ..++|++| .|.||.-.+..
T Consensus 102 ~l~~~~Id~Li~IGGdgS~~~a~----~L~~-~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~ 160 (360)
T PRK14071 102 GYHSLGLDALIGIGGDGSLAILR----RLAQ-QGGINLVGIPKTIDNDVGATEVSIGFDTAVNI 160 (360)
T ss_pred HHHHcCCCEEEEECChhHHHHHH----HHHH-hcCCcEEEecccccCCCcCcccCcChhHHHHH
Confidence 34555899999999988753211 1111 12556655 59999887763
No 432
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=28.05 E-value=3e+02 Score=22.05 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+...+..+.. .+....+||+|+.+
T Consensus 85 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 85 IESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred HHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 45677888999988754322211 12234799999985
No 433
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=27.98 E-value=1.8e+02 Score=19.17 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=25.4
Q ss_pred HHHHHHhCCCeEEEEeCC------CCCHHHHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRND------ELTVEELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~------~~~~~~~~~~~~dglii~GG~ 41 (192)
|.+++++.|+++.+.... ..+.+++. +.|.+|+.+..
T Consensus 21 L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~--~Ad~vi~~~~~ 63 (96)
T cd05569 21 LEKAAKKLGWEIKVETQGSLGIENELTAEDIA--EADAVILAADV 63 (96)
T ss_pred HHHHHHHCCCeEEEEEecCcCccCcCCHHHHh--hCCEEEEecCC
Confidence 668889999998876332 22334444 78899999863
No 434
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.81 E-value=2e+02 Score=25.19 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=13.0
Q ss_pred cHHHHHHhCCCeEEEEe
Q 029484 2 TFLKYMGELGYHFEVYR 18 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~ 18 (192)
+.+++|...|+++.+..
T Consensus 26 aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 26 AVLAALTRFGARPTVCD 42 (488)
T ss_pred HHHHHHHHCCCEEEEEc
Confidence 45678888888888765
No 435
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=27.76 E-value=34 Score=26.34 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=46.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-------HH-HhccCCCeEEECCCCCCCCCcchhHHHHH----HhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTV-------EE-LKRKNPRGVLISPGPGAPQDSGISLQTVL----ELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~-------~~-~~~~~~dglii~GG~~~~~~~~~~~~~~~----~~~~~~PilGIC~G~ 70 (192)
+.+.|++.|+++..++..+... .. .....+|.||++...+- ..+.+.+. ..-.+.+++.|+-.-
T Consensus 16 l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av----~~~~~~~~~~~~~~~~~~~~~avG~~T 91 (249)
T PRK05928 16 LVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAV----EFLLSALKKKKLKWPKNKKYAAIGEKT 91 (249)
T ss_pred HHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHH----HHHHHHHHhcCcCCCCCCEEEEECHHH
Confidence 5688999999998876532211 11 12237999999975331 11122221 123567888888888
Q ss_pred HHHHHHhCCeee
Q 029484 71 QCIGEAFGGKIV 82 (192)
Q Consensus 71 Q~l~~~~gg~v~ 82 (192)
.-..+.+|.+..
T Consensus 92 a~~l~~~G~~~~ 103 (249)
T PRK05928 92 ALALKKLGGKVV 103 (249)
T ss_pred HHHHHHcCCCcc
Confidence 877777886554
No 436
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.69 E-value=2.1e+02 Score=22.78 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHh--CCCeEEEEeCCCCC------HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGE--LGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~--~g~~~~v~~~~~~~------~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++ .|+++.+......+ .+.+...++||+|+.+... ......++.+ ...++||.-+
T Consensus 21 i~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~--~~~~~~~~~~--~~~giPvV~~ 88 (303)
T cd01539 21 LEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDP--TAAQTVINKA--KQKNIPVIFF 88 (303)
T ss_pred HHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCch--hhHHHHHHHH--HHCCCCEEEe
Confidence 4566777 78888877653221 1123334899999976321 1111222222 2357887654
No 437
>smart00427 H2B Histone H2B.
Probab=27.33 E-value=69 Score=21.28 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=21.1
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
|-||+...+.....++..|+..+...
T Consensus 13 qVhpd~giS~kam~imnSfvnDifer 38 (89)
T smart00427 13 QVHPDTGISSKAMSIMNSFVNDIFER 38 (89)
T ss_pred HhCCCccccHHHHHHHHHHHHHHHHH
Confidence 88999977778888888888876654
No 438
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=27.25 E-value=26 Score=29.41 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=25.8
Q ss_pred ceEEEeccCCCCCCCchHHHHHHHHHHHHHHhhhhc
Q 029484 155 HLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADS 190 (192)
Q Consensus 155 ~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~~~~ 190 (192)
.+.-.+||||-. .++++.+|.+.+.+.|+.+|
T Consensus 74 G~vp~~wkPe~~----~D~~~lqfCk~CqgYKapRS 105 (414)
T KOG1314|consen 74 GFVPLGWKPENP----KDEMFLQFCKKCQGYKAPRS 105 (414)
T ss_pred CCCCCCCCCCCC----hhHHHHHHHhhccCcCCCcc
Confidence 356679999984 56799999999998887765
No 439
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=27.25 E-value=81 Score=28.16 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.0
Q ss_pred cHHHHHHhCCCeEEEEeCC
Q 029484 2 TFLKYMGELGYHFEVYRND 20 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~ 20 (192)
|++++|.+.|++|.++.+.
T Consensus 211 Slv~~L~~qGf~V~~iDwr 229 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISWR 229 (532)
T ss_pred HHHHHHHHCCcEEEEEECC
Confidence 6889999999998888763
No 440
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=27.15 E-value=1.8e+02 Score=19.17 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHhCCCeEEEEeCC-----CCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRND-----ELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-----~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~Pil 64 (192)
.++.|++.|..|. -|.. ..+.++... .++|+|++.+|..+. .+..++...+...++||+
T Consensus 21 ~a~~L~~~G~~vv-nPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~gWe~S--~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 21 AAKRLRAKGYEVV-NPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPGWENS--RGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHHHCCCEEe-CchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCCcccC--cchHHHHHHHHHCCCeEe
Confidence 5678888895543 1211 123333211 179999999884432 222233333334456653
No 441
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.99 E-value=1.1e+02 Score=20.84 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH-hccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~-~~~~~dglii~G 39 (192)
+.+++++.|+++++........++. ...++|.+++++
T Consensus 21 ~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 21 TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 4577889999988877642222222 223688777664
No 442
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=26.91 E-value=1.3e+02 Score=21.84 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=24.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++....+ .+.++.+ .++||+||=+|
T Consensus 34 ~~~~a~~~g~~v~~~QSN--~EGelid~I~~a~~~~dgiIINpg 75 (140)
T PF01220_consen 34 CKETAAELGVEVEFFQSN--HEGELIDWIHEARDDVDGIIINPG 75 (140)
T ss_dssp HHHHHHHTTEEEEEEE-S--SHHHHHHHHHHHTCTTSEEEEE-G
T ss_pred HHHHHHHCCCeEEEEecC--CHHHHHHHHHHHHhhCCEEEEccc
Confidence 456677889999999863 2444422 16899999887
No 443
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=26.91 E-value=3.3e+02 Score=21.73 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+..+.. .+....+||+|+.+.
T Consensus 82 i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 82 LEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677889999988765422211 123347999999864
No 444
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=26.83 E-value=1.1e+02 Score=20.82 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHhCCCeEEEEe-CCC------CC-HHHHhccCCCeEEECCCCCCCC--CcchhHHHHHHhCCCCCEE
Q 029484 4 LKYMGELGYHFEVYR-NDE------LT-VEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLELGPTVPLF 64 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~-~~~------~~-~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~~~~~~Pil 64 (192)
.++|++.|+.+..+. ..+ .. .+-+...++|.||-....+... ..+..++. .+++.++|++
T Consensus 36 a~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr-~Av~~~ip~i 105 (116)
T cd01423 36 ADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRR-AADDFAVPLI 105 (116)
T ss_pred HHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCCCccccCcEeeeh-hhHhhCCccc
Confidence 466778888777663 111 11 1223345899998875433321 22222211 1245678886
No 445
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=26.80 E-value=1.7e+02 Score=21.14 Aligned_cols=36 Identities=28% Similarity=0.579 Sum_probs=23.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++....+ .+.++.+ .++||+||=+|
T Consensus 33 l~~~a~~~g~~v~~~QSN--~Egelid~I~~a~~~~dgiIINpg 74 (140)
T cd00466 33 LRELAAELGVEVEFFQSN--HEGELIDWIHEARDGADGIIINPG 74 (140)
T ss_pred HHHHHHHcCCEEEEEeeC--cHHHHHHHHHHhhccCcEEEEcch
Confidence 345556789999999753 2333311 15899999887
No 446
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=26.77 E-value=2.6e+02 Score=21.06 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+++++.|+++.+......+. .++...++||+|+.+.
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 21 AEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred HHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566778899999987642221 1223337999999864
No 447
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=26.71 E-value=1.7e+02 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=14.0
Q ss_pred eEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 34 GVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 34 glii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
.||-.|| |+..|...+.... +.+++|++-|.-
T Consensus 87 ~IIAvGG-Gsv~D~ak~~A~~--~~rgip~I~IPT 118 (355)
T cd08197 87 VIVALGG-GVVGNIAGLLAAL--LFRGIRLVHIPT 118 (355)
T ss_pred EEEEECC-cHHHHHHHHHHHH--hccCCCEEEecC
Confidence 5555554 4444443333322 123455555554
No 448
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.70 E-value=2.4e+02 Score=22.19 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=24.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+.. .+...++||+|+.+.
T Consensus 48 i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 56778889999988754322211 122337999999753
No 449
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=26.63 E-value=2.3e+02 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|..+.+......... .+...++||+|+.+..
T Consensus 86 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 86 LTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45678889998887764322211 1233479999998753
No 450
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=26.16 E-value=69 Score=27.58 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=25.6
Q ss_pred HHhCCCeEEEEeCCCCCHH----HHhccCCCeEEECCCCCCC
Q 029484 7 MGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 7 l~~~g~~~~v~~~~~~~~~----~~~~~~~dglii~GG~~~~ 44 (192)
|--+|.+|++++.+..... +..+...|.|++.||.|..
T Consensus 88 lHLaG~~V~Ivktd~~gqak~l~e~~~t~~Dii~VaGGDGT~ 129 (535)
T KOG4435|consen 88 LHLAGVQVDIVKTDNQGQAKALAEAVDTQEDIIYVAGGDGTI 129 (535)
T ss_pred eeeccceEEEEecCcHHHHHHHHHHhccCCCeEEEecCCCcH
Confidence 4457999999987533211 2222356999999998865
No 451
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=26.10 E-value=2.5e+02 Score=20.15 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=46.1
Q ss_pred HHHHHHhC-CCeEEEEeCC----CCCH-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeeeHhHHHHH
Q 029484 3 FLKYMGEL-GYHFEVYRND----ELTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~~----~~~~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Q~l~ 74 (192)
-.++|++. |+.++.+... .... +-+...++|.||-+.-|........-...+++ ...++|++=-=.+...+.
T Consensus 41 Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA~a~~ 120 (142)
T PRK05234 41 TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATADFLI 120 (142)
T ss_pred HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHHHHHH
Confidence 36788999 9998877321 0112 22344589999998733322110111123332 567899998888888888
Q ss_pred HHhC
Q 029484 75 EAFG 78 (192)
Q Consensus 75 ~~~g 78 (192)
.++.
T Consensus 121 ~al~ 124 (142)
T PRK05234 121 SSLL 124 (142)
T ss_pred HHHh
Confidence 8764
No 452
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.91 E-value=2.5e+02 Score=24.27 Aligned_cols=19 Identities=16% Similarity=0.546 Sum_probs=15.1
Q ss_pred CcHHHHHHhCCCeEEEEeC
Q 029484 1 MTFLKYMGELGYHFEVYRN 19 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~ 19 (192)
++++++|.+.|++|.+...
T Consensus 27 ~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 27 IPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred HHHHHHHHHCCCEEEEECC
Confidence 3578899999998888764
No 453
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.91 E-value=1e+02 Score=23.67 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=9.4
Q ss_pred hCCCCCEEeee
Q 029484 57 LGPTVPLFGVC 67 (192)
Q Consensus 57 ~~~~~PilGIC 67 (192)
..-++|++|||
T Consensus 128 ~~l~IP~Iai~ 138 (196)
T TIGR01012 128 SEVGIPIVALC 138 (196)
T ss_pred HHcCCCEEEEe
Confidence 45789999999
No 454
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=25.54 E-value=1.5e+02 Score=24.88 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=38.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhcc-CCCeEEECCCCCCCCCc
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDS 47 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglii~GG~~~~~~~ 47 (192)
+|.+.++++|.++..+-.++.+.+++... ++|..+.+|=|--+.|+
T Consensus 258 ~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taCPRi~iDd 304 (347)
T COG1736 258 ELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTACPRIPIDD 304 (347)
T ss_pred HHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecCCCcccch
Confidence 46788899999999888888999999887 78999999876655443
No 455
>PLN00158 histone H2B; Provisional
Probab=25.46 E-value=81 Score=22.03 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
-=|.||+...+.....++..|+..+...
T Consensus 37 LKQVhPd~gIS~kaM~ImnSfvnDifer 64 (116)
T PLN00158 37 LKQVHPDTGISSKAMSIMNSFINDIFEK 64 (116)
T ss_pred HHHhCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3489999987778888888888876654
No 456
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=25.34 E-value=2.8e+02 Score=20.48 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhHHH--HHHhCCCC-CEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISLQT--VLELGPTV-PLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~--~~~~~~~~-PilGIC~G~Q~l~~~~ 77 (192)
+++.|++.|+++.-+-+..-. .+++...+-+ -+-+ |..-+ .-.+..++ +.+.+... =++|.|.||=+|...+
T Consensus 73 ~~~iL~~~gFev~sV~CKvg~i~K~~igi~~~~-k~~~-~~~e~-mCNPi~QA~~LN~~~TdlNI~lGLCVGHDsLF~Ky 149 (157)
T PF08901_consen 73 LAKILEANGFEVYSVCCKVGGIDKEEIGIPEED-KIKP-GTFEA-MCNPILQAKLLNEAGTDLNIILGLCVGHDSLFIKY 149 (157)
T ss_pred HHHHHHHCCCEEEEEEecCCCccHHHcCCchhh-ccCC-CCCCc-CcCHHHHHHHHhhcCCceeEEeeehhchHHHHHHh
Confidence 578899999999888664333 3332211111 1222 21111 11233332 22222222 3899999999998754
No 457
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=25.19 E-value=3.5e+02 Score=21.52 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=24.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+.+.+...+..... .+...++||+|+.+.
T Consensus 81 i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 81 IEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 44667788999988765322211 123347999999863
No 458
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=25.01 E-value=3.2e+02 Score=22.28 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+.... ..+.+ .+...++||||+.+.. ... +.+.+...+.++|++-+
T Consensus 68 i~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~--~~~---~~~~l~~~~~giPvV~~ 134 (343)
T PRK10936 68 MVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVT--PDG---LNPDLELQAANIPVIAL 134 (343)
T ss_pred HHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--hHH---hHHHHHHHHCCCCEEEe
Confidence 456778899999888542 11111 1233479999998632 111 11222223467887643
No 459
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.77 E-value=2.9e+02 Score=22.64 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=39.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCC--CCCCCcc--hhHHHHHHhCCCCCEEee---eHhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP--GAPQDSG--ISLQTVLELGPTVPLFGV---CMGLQCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~--~~~~~~~--~~~~~~~~~~~~~PilGI---C~G~Q~l~~ 75 (192)
+++.+++.|..+...-..............|+|++.|-. |+..... .+++.+.+. -++||++- .-+-++.+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~-~~iPviaaGGI~~~~~~~~a 179 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDA-VSIPVIAAGGIADGRGMAAA 179 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHH
Confidence 567888888876543221111123344489999997731 2222222 233444332 25999854 444444333
Q ss_pred -HhCCeee
Q 029484 76 -AFGGKIV 82 (192)
Q Consensus 76 -~~gg~v~ 82 (192)
.+|+.-.
T Consensus 180 l~~GA~gV 187 (307)
T TIGR03151 180 FALGAEAV 187 (307)
T ss_pred HHcCCCEe
Confidence 3554433
No 460
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.73 E-value=8.9 Score=29.86 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 132 DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 132 ~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
+++++|+.+++.....|... +. -+.++|||.+..-+.+.+-+...+.++.+.
T Consensus 100 DPyEILGl~pgas~~eIKka-YR-~LSik~HPDK~~~~~~~e~~~~~I~KAY~a 151 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIKKA-YR-RLSIKYHPDKQPPEEGDEEFFEAIAKAYQA 151 (230)
T ss_pred CcHHhhCCCCCCCHHHHHHH-HH-HhhhhhCCCcCCCcchhHHHHHHHHHHHHH
Confidence 56888888877666555533 33 699999999975555556555566655543
No 461
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.68 E-value=1.2e+02 Score=20.89 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHHHHhc--------cCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVEELKR--------KNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~~~~~--------~~~dglii~ 38 (192)
..+.+++.|+.++.+.+. +.+.+++.. .++||+++-
T Consensus 50 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 50 KQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQ 94 (117)
T ss_dssp HHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred HHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 457788999999988762 344444422 167999984
No 462
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.62 E-value=2.2e+02 Score=22.81 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCC-----CCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP-----GAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~-----~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+++.|.+.|+++.++.- ....-+.. ++|.+++.--. +-....|...-.+.+...++|++-.|-
T Consensus 126 ~a~~L~~~GI~vtli~D--sa~~~~m~-~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 126 MAKLLVKSGIDVVLLTD--ASMCEAVL-NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHCCCCEEEEeh--hHHHHHHH-hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEee
Confidence 56778889999988863 22333332 56766663210 111233444444455567899998774
No 463
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.56 E-value=3.2e+02 Score=23.66 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=23.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHh---------------ccCCCeEEECCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELK---------------RKNPRGVLISPGPG 42 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~---------------~~~~dglii~GG~~ 42 (192)
+.+++|.. |+++.+......+...+. ..++|.||+++|-.
T Consensus 20 a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~ 74 (454)
T PRK01368 20 SVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIP 74 (454)
T ss_pred HHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCC
Confidence 46788884 999888763211111110 11578899988744
No 464
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=24.56 E-value=86 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+-++|.+.|+.+.+++.+. ++. .|..||++.
T Consensus 35 ~y~al~~~gi~vDvv~~~~----dL~--~Ykllv~P~ 65 (207)
T PF08532_consen 35 WYRALRELGIPVDVVSPDD----DLS--GYKLLVLPS 65 (207)
T ss_dssp HHHHHHTTT--EEEE-TTS------T--T-SEEEES-
T ss_pred HHHHHHHcCCceEEecCcC----Ccc--cCcEEEEee
Confidence 4578899999999999742 444 678788774
No 465
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.43 E-value=2.4e+02 Score=21.66 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=21.4
Q ss_pred HHHHHHh--CCCeEEEEeCCCCCHH-------HHhccCCCeEEECC
Q 029484 3 FLKYMGE--LGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~--~g~~~~v~~~~~~~~~-------~~~~~~~dglii~G 39 (192)
+.+.+++ .|+++.+.... .+.+ .+...++||+|+.+
T Consensus 21 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiIi~~ 65 (271)
T cd06321 21 AEAAAKKLNPGVKVTVVSAD-YDLNKQVSQIDNFIAAKVDLILLNA 65 (271)
T ss_pred HHHHHHHhCCCeEEEEccCC-CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5577788 66666665432 2221 12233899999975
No 466
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=24.27 E-value=2.8e+02 Score=23.13 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=27.5
Q ss_pred CCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 21 ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 21 ~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
..+.+.+...++|.||.++............+.+.+ .++|++-+..+
T Consensus 111 ~pn~E~Ilal~PDLVi~~~~~~~~~~~~~~~~~L~~--~Gipvv~~~~~ 157 (374)
T PRK14048 111 GLSFETILTLKADLAILANWQADTEAGQRAIEYLES--IGVPVIVVDFN 157 (374)
T ss_pred CcCHHHHhhcCCCEEEecCcccccccchhHHHHHHH--CCCCEEEEeCC
Confidence 466888888899998876432211111122333333 46899888643
No 467
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.16 E-value=2.2e+02 Score=22.00 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=27.0
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhc----cCCCeEEECCC
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPG 40 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dglii~GG 40 (192)
.-.|+..|+++...-.+ .|.+++.. .++|.|.+|.-
T Consensus 109 ~~~l~~~G~~Vi~LG~~-vp~e~~v~~~~~~~~~~V~lS~~ 148 (213)
T cd02069 109 GVILSNNGYEVIDLGVM-VPIEKILEAAKEHKADIIGLSGL 148 (213)
T ss_pred HHHHHhCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEccc
Confidence 45688999999999864 66666533 37898888864
No 468
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.06 E-value=2.6e+02 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=13.8
Q ss_pred CcHHHHHHhCCCeEEEEe
Q 029484 1 MTFLKYMGELGYHFEVYR 18 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~ 18 (192)
++++++|...|+++.+..
T Consensus 28 ~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 28 RGIAAMLSELGCDVVVAD 45 (473)
T ss_pred HHHHHHHHHCCCEEEEEC
Confidence 357888888898777765
No 469
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.05 E-value=1.2e+02 Score=25.45 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=13.2
Q ss_pred HhccCCCeEEECCCCCCCC
Q 029484 27 LKRKNPRGVLISPGPGAPQ 45 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~ 45 (192)
+.....|++|+-||.||..
T Consensus 90 l~~~gId~LvvIGGDgS~~ 108 (347)
T COG0205 90 LKKLGIDALVVIGGDGSYT 108 (347)
T ss_pred HHHcCCCEEEEECCCChHH
Confidence 3444788888888877653
No 470
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.04 E-value=3.1e+02 Score=21.59 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHhCCC-eEEEEeCCCCCHH-------HHhccCCCeEEECC
Q 029484 3 FLKYMGELGY-HFEVYRNDELTVE-------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~~~-------~~~~~~~dglii~G 39 (192)
+.+.+++.|. .+.+....+.+.+ .+...++||||+.+
T Consensus 20 i~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~ 64 (302)
T TIGR02637 20 AEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISA 64 (302)
T ss_pred HHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4567778885 3443321112221 12234899999975
No 471
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=23.93 E-value=1.7e+02 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=17.4
Q ss_pred CCCC--EEeeeHh---HHHHHHHhCCeeeecC
Q 029484 59 PTVP--LFGVCMG---LQCIGEAFGGKIVRSP 85 (192)
Q Consensus 59 ~~~P--ilGIC~G---~Q~l~~~~gg~v~~~~ 85 (192)
.+++ ++|||-+ ++-|+++.||+.....
T Consensus 135 ~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~ 166 (183)
T cd01453 135 ENIRVSVIGLSAEMHICKEICKATNGTYKVIL 166 (183)
T ss_pred cCcEEEEEEechHHHHHHHHHHHhCCeeEeeC
Confidence 3455 5666655 5566777888887654
No 472
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.80 E-value=1.8e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
..|+|++.+=+. +..+.+-+ .-.+|++||..|-
T Consensus 171 GA~~i~lE~v~~------~~~~~i~~-~v~iP~igiGaG~ 203 (254)
T cd06557 171 GAFALVLECVPA------ELAKEITE-ALSIPTIGIGAGP 203 (254)
T ss_pred CCCEEEEcCCCH------HHHHHHHH-hCCCCEEEeccCC
Confidence 678888876321 23333332 1259999999874
No 473
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=23.80 E-value=2.9e+02 Score=20.68 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=35.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+...++..|.++............+....+|.+|+--. .+... -.+.+.++......|++-++.
T Consensus 21 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~~~~pii~ls~ 85 (239)
T PRK09468 21 LERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQNNPTPIIMLTA 85 (239)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEEEEC
Confidence 55677888988876643111111223336888776432 22222 234555555446789998864
No 474
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.78 E-value=3.1e+02 Score=20.33 Aligned_cols=59 Identities=8% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH----HHHh---ccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTV----EELK---RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~----~~~~---~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+++...|+++....- ..+. +.++ ..++|.++|..|.++. .++...++ +.|+-|.|+.
T Consensus 71 l~~~l~~~Gf~pv~~kG-~~Dv~laIDame~~~~~~iD~~vLvSgD~DF---~~Lv~~lr--e~G~~V~v~g 136 (160)
T TIGR00288 71 LIEAVVNQGFEPIIVAG-DVDVRMAVEAMELIYNPNIDAVALVTRDADF---LPVINKAK--ENGKETIVIG 136 (160)
T ss_pred HHHHHHHCCceEEEecC-cccHHHHHHHHHHhccCCCCEEEEEeccHhH---HHHHHHHH--HCCCEEEEEe
Confidence 56788889999776543 2221 1121 1378999988775532 22333333 3578888776
No 475
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=23.65 E-value=57 Score=26.04 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=27.7
Q ss_pred eEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeee
Q 029484 34 GVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 67 (192)
Q Consensus 34 glii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC 67 (192)
.++|+|=||-+.-+.++++.+.+. ..+.+|+||-
T Consensus 5 i~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~is 39 (266)
T PF10230_consen 5 IVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGIS 39 (266)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEec
Confidence 578888888887777888888764 7899999987
No 476
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.64 E-value=1.3e+02 Score=21.34 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=9.0
Q ss_pred CCCCEEeeeHh
Q 029484 59 PTVPLFGVCMG 69 (192)
Q Consensus 59 ~~~PilGIC~G 69 (192)
..-|||+-|..
T Consensus 86 aegPVlayCrs 96 (130)
T COG3453 86 AEGPVLAYCRS 96 (130)
T ss_pred hCCCEEeeecC
Confidence 45899999964
No 477
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=23.33 E-value=14 Score=27.65 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=10.0
Q ss_pred ceEEEeccCCCC
Q 029484 155 HLQGVQFHPESI 166 (192)
Q Consensus 155 ~~~g~QfHPE~~ 166 (192)
+.|+-|||||.-
T Consensus 118 fsyaaqfhPEiF 129 (214)
T PF01606_consen 118 FSYAAQFHPEIF 129 (214)
T ss_pred HHHHHhhChhhh
Confidence 468899999984
No 478
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=23.28 E-value=2.5e+02 Score=19.66 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=37.1
Q ss_pred cHHHHHHhCCCeEEEEeCC-----CCCHH-HH--------hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 2 TFLKYMGELGYHFEVYRND-----ELTVE-EL--------KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~-----~~~~~-~~--------~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
++.++|+..|+++...+.. +...+ .+ ....+|.++|..|-+ |..+.++.+++ .|+.|..+|
T Consensus 56 ~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~---Df~~~i~~lr~--~G~~V~v~~ 130 (149)
T cd06167 56 GFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS---DFVPLVERLRE--LGKRVIVVG 130 (149)
T ss_pred HHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc---cHHHHHHHHHH--cCCEEEEEc
Confidence 4678899999999888631 11111 11 111588888887744 22233333433 478888888
Q ss_pred Hh
Q 029484 68 MG 69 (192)
Q Consensus 68 ~G 69 (192)
..
T Consensus 131 ~~ 132 (149)
T cd06167 131 FE 132 (149)
T ss_pred cC
Confidence 76
No 479
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=23.22 E-value=90 Score=21.60 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHHHh----ccCC-CeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEELK----RKNP-RGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~~~----~~~~-dglii~GG~~~ 43 (192)
+.+.++..+.++.++...... ...+. ..++ |.||+.||.|.
T Consensus 20 v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGT 66 (130)
T PF00781_consen 20 VEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGT 66 (130)
T ss_dssp HHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHH
T ss_pred HHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccH
Confidence 567888899988887653322 22222 1255 89999999663
No 480
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=23.14 E-value=28 Score=24.76 Aligned_cols=13 Identities=31% Similarity=0.651 Sum_probs=9.8
Q ss_pred EEeeeHhHHHHHH
Q 029484 63 LFGVCMGLQCIGE 75 (192)
Q Consensus 63 ilGIC~G~Q~l~~ 75 (192)
.+|+|.|+++=..
T Consensus 115 ~fGfClGC~~y~~ 127 (131)
T PF14340_consen 115 AFGFCLGCFMYYQ 127 (131)
T ss_pred HhhhhhhHHHHHH
Confidence 4699999987543
No 481
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.12 E-value=3.3e+02 Score=20.94 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=27.0
Q ss_pred CCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 21 ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 21 ~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
..+.+.+...++|.||..++.... .....+.+. .++|++.+...
T Consensus 64 ~~n~E~i~~l~PDLIi~~~~~~~~----~~~~~l~~~-~gipvv~~~~~ 107 (262)
T cd01147 64 TPNYEKIAALKPDVVIDVGSDDPT----SIADDLQKK-TGIPVVVLDGG 107 (262)
T ss_pred CCCHHHHHhcCCCEEEEecCCccc----hhHHHHHHh-hCCCEEEEecC
Confidence 356788888899998887542211 122222221 56899988865
No 482
>PTZ00463 histone H2B; Provisional
Probab=22.92 E-value=97 Score=21.67 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=21.2
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
|.||+...+.....++..|+..+...
T Consensus 40 qVhPd~gIS~kaM~ImnSfvnDifEr 65 (117)
T PTZ00463 40 QVHPDTGISRKSMNIMNSFLVDTFEK 65 (117)
T ss_pred hhCCCCCccHHHHHHHHHHHHHHHHH
Confidence 89999987778888988888876644
No 483
>PRK15341 invasion lipoprotein InvH; Provisional
Probab=22.90 E-value=29 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEeccCCCCCC-CchHHHHHHHHHHHH
Q 029484 158 GVQFHPESIIT-TEGKTIVRNFIKMIV 183 (192)
Q Consensus 158 g~QfHPE~~~~-~~~~~l~~~f~~~~~ 183 (192)
=||=|||+..+ ++..+++++|.+.+.
T Consensus 98 FFqEhPqYmrSkEdEeqLm~EFkkVll 124 (147)
T PRK15341 98 FFQEHPQYMRSKEDEEQLMTEFKKVLL 124 (147)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHhc
Confidence 36789999865 478889999987654
No 484
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=22.77 E-value=3.9e+02 Score=21.53 Aligned_cols=38 Identities=5% Similarity=-0.094 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|..+.+......... .+....+||+|+.+.
T Consensus 81 i~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 81 VDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred HHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45677888999887754322211 123347999999864
No 485
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=22.61 E-value=1.5e+02 Score=23.70 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=30.9
Q ss_pred eEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHh--------------------HHHHHHHhCCeeeec
Q 029484 34 GVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG--------------------LQCIGEAFGGKIVRS 84 (192)
Q Consensus 34 glii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G--------------------~Q~l~~~~gg~v~~~ 84 (192)
.|+++.|..+.. ...+.+.+.. ...+++|..|..| ++-||...||+....
T Consensus 168 iIllTDG~~~~~-~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~ 238 (296)
T TIGR03436 168 LIVISDGGDNRS-RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV 238 (296)
T ss_pred EEEEecCCCcch-HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc
Confidence 577776744321 1122233332 2467999998886 778888899987663
No 486
>PTZ00445 p36-lilke protein; Provisional
Probab=22.56 E-value=2.7e+02 Score=21.81 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-Cc--------chhHHHHHHh-CCCCCEEeeeHhHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DS--------GISLQTVLEL-GPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-~~--------~~~~~~~~~~-~~~~PilGIC~G~Q~ 72 (192)
+++.|++.|+.+..+..|. .+.. +-+||...+. +. ..+...+.++ +.++||.=+=+.=|.
T Consensus 34 ~v~~L~~~GIk~Va~D~Dn----TlI~------~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDL----TMIT------KHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred HHHHHHHcCCeEEEecchh----hhhh------hhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 6889999999999998752 2221 2367766665 22 1233333333 578888888777775
Q ss_pred H
Q 029484 73 I 73 (192)
Q Consensus 73 l 73 (192)
+
T Consensus 104 ~ 104 (219)
T PTZ00445 104 L 104 (219)
T ss_pred h
Confidence 5
No 487
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=22.48 E-value=49 Score=20.91 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=14.5
Q ss_pred HHhCCCCCEEeeeHhHHHHHHHhC
Q 029484 55 LELGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 55 ~~~~~~~PilGIC~G~Q~l~~~~g 78 (192)
.+...++-|.|+|.|. ++.+|
T Consensus 6 ~Rs~~nr~iaGVcgGl---a~yf~ 26 (70)
T COG1983 6 YRSRKNRMIAGVCGGL---AEYFG 26 (70)
T ss_pred hcCccCCEeeeeehhH---HHHhC
Confidence 3445667799999994 55554
No 488
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=22.48 E-value=3.4e+02 Score=21.74 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.3
Q ss_pred cHHHHHHhCCCeEEEEeCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDE 21 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~ 21 (192)
.+.++|++.|+++.++....
T Consensus 22 ~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 22 AVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred HHHHHHhhcCCEEEEEeecC
Confidence 36788999999999997653
No 489
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=22.47 E-value=3.1e+02 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCCCEEeeeHh--------HHHHHHHhCCeeeecC
Q 029484 58 GPTVPLFGVCMG--------LQCIGEAFGGKIVRSP 85 (192)
Q Consensus 58 ~~~~PilGIC~G--------~Q~l~~~~gg~v~~~~ 85 (192)
..+++++.|+.| ++-|+.+.||++....
T Consensus 130 ~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~ 165 (178)
T cd01451 130 ARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLP 165 (178)
T ss_pred hcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcC
Confidence 467999999986 5778888888887765
No 490
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=22.43 E-value=89 Score=23.80 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=45.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCH-------H-HHh---ccCCCeEEECCCCCCCCCcchhHHHHH------HhCCCCCEE
Q 029484 2 TFLKYMGELGYHFEVYRNDELTV-------E-ELK---RKNPRGVLISPGPGAPQDSGISLQTVL------ELGPTVPLF 64 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~-------~-~~~---~~~~dglii~GG~~~~~~~~~~~~~~~------~~~~~~Pil 64 (192)
.+++.|++.|+++..+|.-.... . .+. ...+|.||++...+- ..+.+.+. ..-.+++++
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av----~~~~~~l~~~~~~~~~~~~~~i~ 77 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAV----RAFFKALQSAGADLRLLKNIKIF 77 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHH----HHHHHHHHHTTHHHHHHHHSEEE
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHH----HHHHHHHhhhhhhhhhccCCeEE
Confidence 36789999999999888632222 1 121 237999999965321 11112221 112368888
Q ss_pred eeeHhHHHHHHHhCCee
Q 029484 65 GVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 65 GIC~G~Q~l~~~~gg~v 81 (192)
.|+-.---..+..|-+.
T Consensus 78 avG~~Ta~~l~~~G~~~ 94 (231)
T PF02602_consen 78 AVGPKTAEALREYGFQP 94 (231)
T ss_dssp ESSHHHHHHHHHTT-EE
T ss_pred EEcHHHHHHHHHcCCCc
Confidence 77777666666777665
No 491
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.29 E-value=3.1e+02 Score=21.00 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=23.0
Q ss_pred HHHHHHh-CCCeEEEEeCCC-CCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGE-LGYHFEVYRNDE-LTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~-~~~~~~~~~~~dglii~G 39 (192)
+.+++++ .|+.+.+...+. ...+.+...++||+|+.+
T Consensus 20 i~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 20 IARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred HHHHHHhcCCeEEEEecccchhhhhhccccccceEEEEC
Confidence 5577788 688877654321 112234445899999974
No 492
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=22.28 E-value=1.5e+02 Score=23.79 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCCeEEECCC-CCCCCCcchhHHHHHHhCCCCCE-EeeeHhHHHHHHHh
Q 029484 31 NPRGVLISPG-PGAPQDSGISLQTVLELGPTVPL-FGVCMGLQCIGEAF 77 (192)
Q Consensus 31 ~~dglii~GG-~~~~~~~~~~~~~~~~~~~~~Pi-lGIC~G~Q~l~~~~ 77 (192)
..||||++|- -|.+.+.. .++.+++.....|+ +|=.....-+.+++
T Consensus 171 ~aDavivtG~~TG~~~d~~-~l~~vr~~~~~~PvllggGvt~eNv~e~l 218 (257)
T TIGR00259 171 LADAVILSGKTTGTEVDLE-LLKLAKETVKDTPVLAGSGVNLENVEELL 218 (257)
T ss_pred CCCEEEECcCCCCCCCCHH-HHHHHHhccCCCeEEEECCCCHHHHHHHH
Confidence 4899999983 33333332 33444443345784 44444444444443
No 493
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=22.28 E-value=2.2e+02 Score=23.23 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=43.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcc-CCCeEEECC---CCCC-CCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISP---GPGA-PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglii~G---G~~~-~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.+.++..|.+.. +..| . ...... -|+|+++-. |.+. ..--|.+...+..++..+|-.|+++|.-.|..++
T Consensus 237 ~~~~l~~~~~~~~-i~~D-~--~~~r~~~YYtGivFe~~~~~~~~~i~~GGRYD~L~~~fg~~~~AvGfa~~~d~l~~~l 312 (314)
T TIGR00443 237 VLELLEARGVEEY-ISLD-L--GLVRGYHYYTGLIFEGYAPGLGAPIAGGGRYDNLLGRFGRPLPATGFALNLERLLEAL 312 (314)
T ss_pred HHHHHHHhCCCCe-EEEe-c--ccccCCCCccceEEEEEECCCCCcccCCccHHHHHHHcCCCCCCceEEecHHHHHHHh
Confidence 4567777887632 2222 1 112222 478888754 3232 2233567677777778899999999998887654
No 494
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=22.22 E-value=4.9e+02 Score=22.30 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=14.8
Q ss_pred cHHHHHHhCCCeEEEEeC
Q 029484 2 TFLKYMGELGYHFEVYRN 19 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~ 19 (192)
.|+++|.+.|++|.....
T Consensus 14 ~la~~l~~~G~~V~~~D~ 31 (448)
T TIGR01081 14 GLAMIAKQLGHEVTGSDA 31 (448)
T ss_pred HHHHHHHhCCCEEEEECC
Confidence 478899999999888764
No 495
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.14 E-value=2.6e+02 Score=19.28 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=23.7
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCC
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 41 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~ 41 (192)
.+.|++ |+++++.. ..+.+++.. .++|++++.+++
T Consensus 12 ~~~l~~-~~~v~~~~--~~~~~~~~~~l~~~d~ii~~~~~ 48 (133)
T PF00389_consen 12 IERLEE-GFEVEFCD--SPSEEELAERLKDADAIIVGSGT 48 (133)
T ss_dssp HHHHHH-TSEEEEES--SSSHHHHHHHHTTESEEEESTTS
T ss_pred HHHHHC-CceEEEeC--CCCHHHHHHHhCCCeEEEEcCCC
Confidence 456777 77777776 355565433 389999987765
No 496
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=22.12 E-value=2e+02 Score=23.21 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=19.6
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
..|+|++.+=+. +..+.+-+ .-.+|++||..|-
T Consensus 174 GA~~i~lE~v~~------~~~~~i~~-~l~iP~igiGaG~ 206 (264)
T PRK00311 174 GAFALVLECVPA------ELAKEITE-ALSIPTIGIGAGP 206 (264)
T ss_pred CCCEEEEcCCCH------HHHHHHHH-hCCCCEEEeccCC
Confidence 678888875321 22233322 2359999997764
No 497
>PTZ00287 6-phosphofructokinase; Provisional
Probab=21.85 E-value=64 Score=32.23 Aligned_cols=47 Identities=15% Similarity=0.395 Sum_probs=28.7
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCC--EEe---------------eeHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP--LFG---------------VCMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~P--ilG---------------IC~G~Q~l~~ 75 (192)
+...+.|++|+.||.++......+-+...+ .++| |+| .|.||.-.+.
T Consensus 924 lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~--~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~ 987 (1419)
T PTZ00287 924 VTNLQLNGLVMPGSNVTITEAALLAEYFLE--KKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK 987 (1419)
T ss_pred HHHhCCCEEEEECCchHHHHHHHHHHHHHh--cCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH
Confidence 444589999999998876444333222221 2344 444 4888877665
No 498
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.82 E-value=1.5e+02 Score=24.21 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=28.0
Q ss_pred CCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 10 LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 10 ~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
.|.++.+..+. .+..++.. ..|.+|..+|+ ...+..+..++|++.++.
T Consensus 233 ~~~~v~~~g~~-~~~~~~~~-~~d~~i~~~g~---------~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 233 AGINAEVVPFI-DDMAAAYA-AADLVICRAGA---------STVAELAAAGLPAILVPL 280 (357)
T ss_pred cCCcEEEeehH-hhHHHHHH-hCCEEEECCCH---------HHHHHHHHhCCCEEEecC
Confidence 55554444432 22333332 57777776652 234455678999999986
No 499
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=21.68 E-value=1.6e+02 Score=23.56 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=9.2
Q ss_pred hCCCCCEEeee
Q 029484 57 LGPTVPLFGVC 67 (192)
Q Consensus 57 ~~~~~PilGIC 67 (192)
..-++|++|+|
T Consensus 138 ~~lnIPvIal~ 148 (249)
T PTZ00254 138 SYVNIPVIALC 148 (249)
T ss_pred HHhCCCEEEEe
Confidence 44679999999
No 500
>PF04741 InvH: InvH outer membrane lipoprotein; InterPro: IPR006830 This family represents the Salmonella outer membrane lipoprotein InvH. The molecular function of this protein is unknown, but it is required for the localisation to outer membrane of InvG, which is involved in a type III secretion apparatus mediating host cell invasion [, ].; GO: 0009405 pathogenesis
Probab=21.63 E-value=30 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=20.5
Q ss_pred EeccCCCCCCC-chHHHHHHHHHHHHH
Q 029484 159 VQFHPESIITT-EGKTIVRNFIKMIVR 184 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~~~~~~ 184 (192)
||=|||+..+- +...|+++|-+.+..
T Consensus 99 FqEHPeYm~s~e~EeqL~~EF~~Vl~~ 125 (147)
T PF04741_consen 99 FQEHPEYMRSKEDEEQLMAEFKQVLLE 125 (147)
T ss_pred HHHChHHHhhhHHHHHHHHHHHHHHcc
Confidence 57799998553 788899999887653
Done!