Query 029484
Match_columns 192
No_of_seqs 114 out of 1208
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 22:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 100.0 3.6E-38 1.2E-42 240.6 19.9 174 2-180 16-193 (195)
2 1i1q_B Anthranilate synthase c 100.0 3.4E-36 1.2E-40 229.1 16.2 172 2-183 15-190 (192)
3 1wl8_A GMP synthase [glutamine 100.0 2.2E-35 7.7E-40 224.0 19.8 171 2-182 15-186 (189)
4 2a9v_A GMP synthase; structura 100.0 6.1E-36 2.1E-40 231.1 15.9 173 2-187 28-204 (212)
5 2vpi_A GMP synthase; guanine m 100.0 7.4E-35 2.5E-39 225.8 13.5 169 2-182 39-210 (218)
6 1a9x_B Carbamoyl phosphate syn 100.0 3.8E-34 1.3E-38 236.8 18.5 172 2-186 203-377 (379)
7 3tqi_A GMP synthase [glutamine 100.0 3.5E-35 1.2E-39 253.6 9.7 174 2-184 25-206 (527)
8 1gpm_A GMP synthetase, XMP ami 100.0 2E-34 6.7E-39 248.9 13.2 171 2-183 22-202 (525)
9 2ywb_A GMP synthase [glutamine 100.0 4.2E-34 1.4E-38 245.8 15.1 169 2-182 14-184 (503)
10 3uow_A GMP synthetase; structu 100.0 2E-34 6.7E-39 250.0 12.5 175 2-183 22-230 (556)
11 3fij_A LIN1909 protein; 11172J 100.0 2.7E-33 9.2E-38 221.7 16.7 178 2-185 32-243 (254)
12 1o1y_A Conserved hypothetical 100.0 1.5E-31 5.2E-36 209.9 16.0 166 2-184 28-202 (239)
13 2vxo_A GMP synthase [glutamine 100.0 6.4E-32 2.2E-36 238.8 15.0 166 3-180 45-212 (697)
14 3l7n_A Putative uncharacterize 100.0 8.7E-32 3E-36 210.9 13.9 167 2-183 16-195 (236)
15 3m3p_A Glutamine amido transfe 100.0 3.2E-32 1.1E-36 214.7 11.4 164 2-181 19-190 (250)
16 3r75_A Anthranilate/para-amino 100.0 1.2E-31 4.1E-36 235.3 13.1 171 2-186 461-637 (645)
17 4gud_A Imidazole glycerol phos 100.0 6.3E-32 2.1E-36 208.2 6.7 167 2-185 17-207 (211)
18 1l9x_A Gamma-glutamyl hydrolas 100.0 1E-30 3.5E-35 212.7 8.9 181 2-185 56-279 (315)
19 2ywj_A Glutamine amidotransfer 100.0 5.2E-30 1.8E-34 193.9 8.9 160 2-183 14-184 (186)
20 3d54_D Phosphoribosylformylgly 100.0 3.9E-29 1.3E-33 192.6 13.2 168 2-182 18-211 (213)
21 2w7t_A CTP synthetase, putativ 100.0 4.6E-30 1.6E-34 205.1 7.6 179 3-185 32-257 (273)
22 2v4u_A CTP synthase 2; pyrimid 100.0 4.4E-29 1.5E-33 200.8 7.3 155 31-187 90-279 (289)
23 1s1m_A CTP synthase; CTP synth 99.9 2.1E-28 7.1E-33 210.1 8.0 184 2-189 307-543 (545)
24 1vco_A CTP synthetase; tetrame 99.9 3E-28 1E-32 209.4 7.5 182 3-186 323-547 (550)
25 2nv0_A Glutamine amidotransfer 99.9 1.1E-26 3.8E-31 176.9 11.3 166 3-187 16-192 (196)
26 1gpw_B Amidotransferase HISH; 99.9 5.7E-28 1.9E-32 184.8 3.7 164 2-183 15-198 (201)
27 1q7r_A Predicted amidotransfer 99.9 8.1E-27 2.8E-31 180.7 7.1 163 3-187 38-214 (219)
28 3nva_A CTP synthase; rossman f 99.9 1.1E-26 3.6E-31 197.1 8.4 174 5-183 318-533 (535)
29 1ka9_H Imidazole glycerol phos 99.9 6.4E-27 2.2E-31 178.9 6.3 159 2-182 17-200 (200)
30 2ywd_A Glutamine amidotransfer 99.9 1.7E-26 5.7E-31 175.1 7.5 158 2-182 16-189 (191)
31 2iss_D Glutamine amidotransfer 99.9 1.3E-25 4.3E-30 172.7 7.0 158 3-182 35-207 (208)
32 2abw_A PDX2 protein, glutamina 99.9 5.1E-24 1.7E-28 165.7 8.8 169 3-186 18-217 (227)
33 1jvn_A Glutamine, bifunctional 99.9 1.8E-24 6.3E-29 187.7 2.5 167 2-181 19-214 (555)
34 2h2w_A Homoserine O-succinyltr 99.9 2.2E-22 7.7E-27 162.2 9.9 160 3-166 66-250 (312)
35 2vdj_A Homoserine O-succinyltr 99.9 5E-22 1.7E-26 159.7 11.4 156 3-166 54-239 (301)
36 3ugj_A Phosphoribosylformylgly 99.5 4.8E-14 1.7E-18 131.3 9.7 177 2-182 1063-1302(1303)
37 1fy2_A Aspartyl dipeptidase; s 98.5 2.2E-08 7.6E-13 77.5 1.4 74 2-77 52-130 (229)
38 3l4e_A Uncharacterized peptida 98.5 4.6E-08 1.6E-12 74.5 2.3 71 2-76 48-129 (206)
39 4hcj_A THIJ/PFPI domain protei 98.2 1.7E-06 6E-11 64.2 5.5 73 4-76 28-117 (177)
40 1oi4_A Hypothetical protein YH 98.2 1.8E-06 6.1E-11 64.8 5.6 74 3-76 42-134 (193)
41 1vhq_A Enhancing lycopene bios 98.0 4.8E-06 1.6E-10 64.3 4.7 75 4-78 31-151 (232)
42 3l18_A Intracellular protease 98.0 4.2E-06 1.4E-10 61.1 3.9 74 3-76 21-111 (168)
43 3l3b_A ES1 family protein; ssg 97.8 2E-05 7E-10 61.2 5.1 74 4-77 48-168 (242)
44 2rk3_A Protein DJ-1; parkinson 97.8 1.8E-05 6.1E-10 59.4 4.3 74 3-76 22-115 (197)
45 2ab0_A YAJL; DJ-1/THIJ superfa 97.8 1.2E-05 4.1E-10 60.8 3.0 74 3-76 21-116 (205)
46 2vrn_A Protease I, DR1199; cys 97.7 2.2E-05 7.6E-10 58.4 4.0 74 3-76 28-124 (190)
47 3ej6_A Catalase-3; heme, hydro 97.6 0.0001 3.5E-09 64.8 7.0 75 2-76 556-646 (688)
48 4e08_A DJ-1 beta; flavodoxin-l 97.6 4E-05 1.4E-09 57.1 3.9 74 3-76 24-116 (190)
49 3f5d_A Protein YDEA; unknow pr 97.6 0.00014 4.9E-09 55.0 6.3 73 3-76 22-109 (206)
50 1u9c_A APC35852; structural ge 97.6 5.9E-05 2E-09 57.6 4.1 74 3-76 34-138 (224)
51 3cne_A Putative protease I; st 97.5 5.1E-05 1.7E-09 55.7 3.6 68 9-76 27-120 (175)
52 2fex_A Conserved hypothetical 97.5 0.00012 4E-09 54.4 5.2 74 3-76 20-110 (188)
53 3uk7_A Class I glutamine amido 97.4 0.00015 5E-09 60.1 5.0 74 3-76 224-330 (396)
54 3n7t_A Macrophage binding prot 97.3 7.9E-05 2.7E-09 58.1 2.4 46 31-76 105-154 (247)
55 3uk7_A Class I glutamine amido 97.3 0.00025 8.5E-09 58.8 5.2 74 3-76 31-137 (396)
56 2iuf_A Catalase; oxidoreductas 97.3 0.00027 9.3E-09 62.3 5.5 75 2-76 549-648 (688)
57 3kkl_A Probable chaperone prot 97.3 0.00011 3.8E-09 57.1 2.7 46 31-76 98-147 (244)
58 3efe_A THIJ/PFPI family protei 97.2 0.00068 2.3E-08 51.3 6.7 68 9-76 38-121 (212)
59 1rw7_A YDR533CP; alpha-beta sa 97.2 0.00011 3.6E-09 57.0 1.6 46 31-76 98-147 (243)
60 3fse_A Two-domain protein cont 97.2 0.00037 1.3E-08 57.2 4.6 74 3-76 29-121 (365)
61 3ot1_A 4-methyl-5(B-hydroxyeth 97.1 0.00012 4E-09 55.4 1.3 74 3-76 28-121 (208)
62 3ttv_A Catalase HPII; heme ori 97.1 0.00031 1E-08 62.3 3.7 74 2-76 618-708 (753)
63 3gra_A Transcriptional regulat 97.0 0.00056 1.9E-08 51.4 4.3 47 30-76 70-117 (202)
64 1n57_A Chaperone HSP31, protei 96.7 0.00082 2.8E-08 53.5 3.0 48 30-77 144-195 (291)
65 3er6_A Putative transcriptiona 96.6 0.00079 2.7E-08 50.9 2.4 46 31-76 74-124 (209)
66 1sy7_A Catalase 1; heme oxidat 96.6 0.0011 3.9E-08 58.8 3.3 76 3-78 553-646 (715)
67 3noq_A THIJ/PFPI family protei 96.4 0.0027 9.1E-08 48.8 4.1 46 31-76 65-113 (231)
68 3ewn_A THIJ/PFPI family protei 95.9 0.0043 1.5E-07 48.3 3.0 72 4-76 43-133 (253)
69 4gdh_A DJ-1, uncharacterized p 95.8 0.0055 1.9E-07 45.7 2.9 45 31-76 73-122 (194)
70 3mgk_A Intracellular protease/ 95.6 0.0019 6.5E-08 48.9 -0.1 46 31-76 65-113 (211)
71 3bhn_A THIJ/PFPI domain protei 95.6 0.003 1E-07 48.7 1.0 45 31-76 80-128 (236)
72 3en0_A Cyanophycinase; serine 95.0 0.013 4.3E-07 46.6 2.8 72 3-76 76-161 (291)
73 1t0b_A THUA-like protein; treh 93.7 1.9 6.4E-05 33.2 14.0 173 3-183 37-225 (252)
74 1z0s_A Probable inorganic poly 92.8 0.11 3.8E-06 40.9 4.2 57 3-70 45-101 (278)
75 2an1_A Putative kinase; struct 90.0 0.43 1.5E-05 37.4 5.1 61 3-70 26-97 (292)
76 4e5v_A Putative THUA-like prot 89.5 3.4 0.00012 32.3 9.9 174 3-184 25-255 (281)
77 2i2c_A Probable inorganic poly 87.8 0.38 1.3E-05 37.5 3.3 49 3-70 20-71 (272)
78 3kbq_A Protein TA0487; structu 87.1 1.7 5.9E-05 31.5 6.2 73 3-78 28-107 (172)
79 2fz5_A Flavodoxin; alpha/beta 87.1 3.8 0.00013 27.4 7.9 35 3-39 20-54 (137)
80 1u0t_A Inorganic polyphosphate 87.0 0.46 1.6E-05 37.7 3.4 61 3-69 25-108 (307)
81 2r47_A Uncharacterized protein 86.3 0.15 5.1E-06 36.4 0.2 38 31-68 84-125 (157)
82 5nul_A Flavodoxin; electron tr 82.7 2.6 8.9E-05 28.6 5.4 35 3-39 19-53 (138)
83 3pfn_A NAD kinase; structural 82.4 1.6 5.6E-05 35.5 4.8 62 2-70 58-142 (365)
84 3iwt_A 178AA long hypothetical 80.1 3 0.0001 30.0 5.1 45 3-47 45-97 (178)
85 2pjk_A 178AA long hypothetical 76.2 4.7 0.00016 29.2 5.1 42 3-44 45-94 (178)
86 2gk3_A Putative cytoplasmic pr 76.1 2.8 9.5E-05 32.2 4.1 63 3-67 45-125 (256)
87 2ark_A Flavodoxin; FMN, struct 75.0 6.3 0.00022 28.3 5.6 39 3-44 25-64 (188)
88 1mkz_A Molybdenum cofactor bio 74.6 5.3 0.00018 28.7 5.1 43 3-45 33-83 (172)
89 2qv7_A Diacylglycerol kinase D 72.7 8.1 0.00028 30.7 6.2 61 3-69 47-115 (337)
90 2a5l_A Trp repressor binding p 70.5 13 0.00043 26.6 6.4 39 3-44 26-83 (200)
91 1ehs_A STB, heat-stable entero 70.1 0.69 2.4E-05 24.8 -0.5 17 62-78 31-47 (48)
92 1y5e_A Molybdenum cofactor bio 69.2 6.5 0.00022 28.1 4.5 42 3-44 36-85 (169)
93 2g2c_A Putative molybdenum cof 68.2 7.7 0.00026 27.6 4.7 53 3-56 30-93 (167)
94 3pzy_A MOG; ssgcid, seattle st 67.9 6.4 0.00022 28.1 4.1 53 3-56 32-90 (164)
95 3rfq_A Pterin-4-alpha-carbinol 66.3 8.2 0.00028 28.2 4.5 42 3-44 54-102 (185)
96 3bbl_A Regulatory protein of L 65.6 35 0.0012 25.6 8.4 58 3-66 30-93 (287)
97 2bon_A Lipid kinase; DAG kinas 64.9 13 0.00044 29.4 5.9 70 3-78 49-129 (332)
98 3kke_A LACI family transcripti 64.0 30 0.001 26.2 7.8 59 3-67 37-101 (303)
99 2qxy_A Response regulator; reg 63.9 6.6 0.00023 26.0 3.5 63 3-68 20-83 (142)
100 3rht_A (gatase1)-like protein; 63.2 9.9 0.00034 29.3 4.7 35 3-39 22-58 (259)
101 1g8l_A Molybdopterin biosynthe 62.3 13 0.00046 30.6 5.6 41 3-43 209-255 (411)
102 2is8_A Molybdopterin biosynthe 62.2 6.7 0.00023 27.8 3.3 53 3-56 26-86 (164)
103 2rgy_A Transcriptional regulat 61.4 24 0.00082 26.6 6.7 59 3-67 30-97 (290)
104 1yt5_A Inorganic polyphosphate 61.3 3.5 0.00012 31.6 1.8 34 31-70 41-74 (258)
105 1eiw_A Hypothetical protein MT 61.3 5.8 0.0002 26.5 2.6 35 31-67 38-74 (111)
106 2rdm_A Response regulator rece 61.1 22 0.00075 22.8 5.7 66 3-68 21-87 (132)
107 2zki_A 199AA long hypothetical 61.0 16 0.00055 26.1 5.3 19 3-21 24-42 (199)
108 3eod_A Protein HNR; response r 61.0 23 0.00079 22.7 5.8 65 3-68 23-87 (130)
109 3tb6_A Arabinose metabolism tr 60.5 41 0.0014 25.1 7.9 63 3-67 37-106 (298)
110 3o74_A Fructose transport syst 59.8 33 0.0011 25.2 7.2 39 3-41 24-68 (272)
111 3m9w_A D-xylose-binding peripl 59.8 29 0.001 26.4 7.0 38 3-40 24-67 (313)
112 3cs3_A Sugar-binding transcrip 59.6 17 0.00057 27.2 5.5 37 3-40 30-66 (277)
113 3l6u_A ABC-type sugar transpor 59.5 35 0.0012 25.5 7.3 38 3-40 30-73 (293)
114 2fep_A Catabolite control prot 59.4 30 0.001 26.0 7.0 38 3-40 38-81 (289)
115 2fn9_A Ribose ABC transporter, 59.4 45 0.0015 24.9 7.9 38 3-40 24-67 (290)
116 3egc_A Putative ribose operon 59.0 40 0.0014 25.2 7.6 40 3-42 30-75 (291)
117 3jy6_A Transcriptional regulat 58.9 32 0.0011 25.6 6.9 58 3-67 29-92 (276)
118 3k9c_A Transcriptional regulat 58.7 15 0.00053 27.7 5.1 58 3-67 33-95 (289)
119 2q9u_A A-type flavoprotein; fl 58.2 22 0.00076 28.6 6.3 63 3-67 277-348 (414)
120 3c3k_A Alanine racemase; struc 58.0 28 0.00097 26.1 6.5 58 3-67 30-93 (285)
121 4eg0_A D-alanine--D-alanine li 57.1 20 0.00068 27.8 5.6 38 2-39 36-73 (317)
122 3g1w_A Sugar ABC transporter; 55.4 42 0.0014 25.2 7.2 38 3-40 26-70 (305)
123 1uuy_A CNX1, molybdopterin bio 55.1 27 0.00091 24.7 5.5 53 3-56 30-95 (167)
124 2rjn_A Response regulator rece 55.1 23 0.00078 23.7 5.1 66 3-69 23-88 (154)
125 3rot_A ABC sugar transporter, 54.3 35 0.0012 25.8 6.5 38 3-40 25-70 (297)
126 2pln_A HP1043, response regula 54.0 17 0.00058 23.7 4.2 60 3-68 34-94 (137)
127 3eag_A UDP-N-acetylmuramate:L- 53.9 40 0.0014 26.4 6.9 18 3-20 20-37 (326)
128 3l49_A ABC sugar (ribose) tran 53.6 31 0.0011 25.8 6.1 38 3-40 27-70 (291)
129 2ohh_A Type A flavoprotein FPR 53.6 20 0.00067 28.8 5.2 38 3-40 277-316 (404)
130 2qr3_A Two-component system re 53.2 17 0.0006 23.6 4.1 66 3-68 19-88 (140)
131 3o1i_D Periplasmic protein TOR 53.0 27 0.00093 26.3 5.7 59 3-66 27-93 (304)
132 1uz5_A MOEA protein, 402AA lon 52.7 13 0.00045 30.6 3.9 52 3-55 212-269 (402)
133 3qk7_A Transcriptional regulat 52.4 71 0.0024 23.9 8.2 40 3-42 32-76 (294)
134 3afo_A NADH kinase POS5; alpha 52.0 7.7 0.00026 31.8 2.4 33 31-69 114-148 (388)
135 2j48_A Two-component sensor ki 51.9 27 0.00093 21.5 4.8 64 3-67 17-82 (119)
136 3f6c_A Positive transcription 51.8 44 0.0015 21.4 6.2 65 3-69 17-83 (134)
137 1f4p_A Flavodoxin; electron tr 51.6 12 0.0004 25.4 3.1 34 3-38 21-55 (147)
138 1dbq_A Purine repressor; trans 51.1 51 0.0017 24.5 7.0 58 3-66 29-93 (289)
139 2f48_A Diphosphate--fructose-6 50.9 3.2 0.00011 35.8 -0.1 49 27-75 162-225 (555)
140 1qkk_A DCTD, C4-dicarboxylate 50.9 24 0.00081 23.6 4.6 62 3-68 19-83 (155)
141 3f6r_A Flavodoxin; FMN binding 50.4 23 0.00077 24.0 4.4 35 3-38 22-56 (148)
142 2hig_A 6-phospho-1-fructokinas 50.1 3.1 0.00011 35.3 -0.2 49 27-75 185-246 (487)
143 2vzf_A NADH-dependent FMN redu 50.1 16 0.00056 26.3 3.8 20 4-23 26-46 (197)
144 3uug_A Multiple sugar-binding 49.8 48 0.0017 25.2 6.8 38 3-40 25-68 (330)
145 3cg0_A Response regulator rece 49.3 26 0.00088 22.7 4.5 65 3-68 25-90 (140)
146 1rrm_A Lactaldehyde reductase; 49.3 10 0.00035 30.7 2.8 10 31-40 88-97 (386)
147 1di6_A MOGA, molybdenum cofact 49.3 15 0.00053 26.9 3.5 42 3-45 28-80 (195)
148 3cg4_A Response regulator rece 49.0 23 0.00079 23.1 4.2 64 3-67 23-88 (142)
149 2fts_A Gephyrin; gephyrin, neu 48.7 15 0.00051 30.4 3.7 41 3-43 213-259 (419)
150 3fni_A Putative diflavin flavo 48.6 21 0.00071 24.9 4.1 36 3-38 25-63 (159)
151 3h5i_A Response regulator/sens 48.3 40 0.0014 21.9 5.4 64 3-67 21-85 (140)
152 3k4h_A Putative transcriptiona 48.3 51 0.0017 24.6 6.6 39 3-41 35-79 (292)
153 4hv4_A UDP-N-acetylmuramate--L 48.3 33 0.0011 28.7 5.9 39 3-41 38-91 (494)
154 3hcw_A Maltose operon transcri 48.1 61 0.0021 24.3 7.0 39 3-41 34-78 (295)
155 3hly_A Flavodoxin-like domain; 47.6 23 0.00078 24.7 4.1 36 3-38 21-58 (161)
156 3brq_A HTH-type transcriptiona 47.5 66 0.0022 23.9 7.1 59 3-67 43-108 (296)
157 3gt7_A Sensor protein; structu 47.5 38 0.0013 22.6 5.3 63 3-67 23-88 (154)
158 3hzh_A Chemotaxis response reg 47.4 36 0.0012 22.9 5.1 65 3-68 52-119 (157)
159 3soz_A ORF 245 protein, cytopl 47.4 13 0.00043 28.5 2.9 35 3-39 38-78 (248)
160 2i2x_B MTAC, methyltransferase 47.2 46 0.0016 25.2 6.1 62 3-65 143-209 (258)
161 2h3h_A Sugar ABC transporter, 47.1 83 0.0028 23.8 7.7 38 3-40 22-66 (313)
162 3i42_A Response regulator rece 46.8 24 0.00082 22.5 3.9 63 3-67 19-84 (127)
163 3clk_A Transcription regulator 46.8 51 0.0017 24.7 6.3 59 3-67 30-95 (290)
164 3grc_A Sensor protein, kinase; 46.6 36 0.0012 22.1 4.9 67 3-71 22-91 (140)
165 3bfj_A 1,3-propanediol oxidore 46.3 21 0.00071 28.9 4.2 10 62-71 95-104 (387)
166 2gkg_A Response regulator homo 46.2 18 0.00062 22.9 3.2 64 3-66 21-86 (127)
167 1jlj_A Gephyrin; globular alph 46.2 31 0.0011 25.0 4.8 42 3-44 39-91 (189)
168 3h5o_A Transcriptional regulat 45.8 94 0.0032 23.8 8.0 58 3-66 84-147 (339)
169 3h75_A Periplasmic sugar-bindi 45.5 51 0.0017 25.5 6.3 59 3-67 26-93 (350)
170 2o20_A Catabolite control prot 45.1 88 0.003 23.9 7.7 38 3-40 85-128 (332)
171 3d8u_A PURR transcriptional re 44.7 54 0.0018 24.1 6.2 58 3-66 25-88 (275)
172 1ydg_A Trp repressor binding p 44.5 36 0.0012 24.5 4.9 19 3-21 27-45 (211)
173 1ykg_A SIR-FP, sulfite reducta 44.5 19 0.00065 25.2 3.3 34 3-38 30-63 (167)
174 3jte_A Response regulator rece 44.3 48 0.0016 21.5 5.3 65 3-68 19-85 (143)
175 2zay_A Response regulator rece 44.2 25 0.00084 23.2 3.8 65 3-68 24-90 (147)
176 2ioy_A Periplasmic sugar-bindi 43.4 79 0.0027 23.5 7.0 38 3-40 23-66 (283)
177 1qpz_A PURA, protein (purine n 43.3 99 0.0034 23.7 7.7 37 3-40 80-123 (340)
178 2pbq_A Molybdenum cofactor bio 43.1 25 0.00086 25.1 3.8 43 3-46 30-83 (178)
179 2fvy_A D-galactose-binding per 42.7 81 0.0028 23.6 7.0 61 3-67 24-91 (309)
180 3b6i_A Flavoprotein WRBA; flav 42.6 22 0.00075 25.3 3.5 19 3-21 22-41 (198)
181 1wu2_A MOEA protein, molybdopt 42.2 21 0.00073 29.2 3.6 41 3-43 216-262 (396)
182 8abp_A L-arabinose-binding pro 42.1 42 0.0014 25.2 5.2 38 3-40 24-66 (306)
183 3huu_A Transcription regulator 41.7 54 0.0019 24.7 5.8 39 3-41 49-93 (305)
184 3bil_A Probable LACI-family tr 41.4 60 0.002 25.2 6.1 37 3-40 88-131 (348)
185 2yvq_A Carbamoyl-phosphate syn 41.2 32 0.0011 23.6 4.0 71 4-76 60-141 (143)
186 3gl9_A Response regulator; bet 41.0 66 0.0023 20.3 5.7 64 3-68 18-84 (122)
187 3e61_A Putative transcriptiona 40.9 51 0.0017 24.4 5.5 56 3-66 30-92 (277)
188 3cnb_A DNA-binding response re 40.9 45 0.0015 21.5 4.7 65 3-68 24-92 (143)
189 3hv2_A Response regulator/HD d 40.8 39 0.0013 22.4 4.4 65 3-68 30-94 (153)
190 3hdg_A Uncharacterized protein 40.7 38 0.0013 21.9 4.2 65 3-68 23-87 (137)
191 1e2b_A Enzyme IIB-cellobiose; 40.4 25 0.00084 22.9 3.1 36 3-39 23-58 (106)
192 3ox4_A Alcohol dehydrogenase 2 40.2 17 0.00058 29.5 2.8 17 31-48 88-104 (383)
193 2qu7_A Putative transcriptiona 39.8 56 0.0019 24.3 5.6 39 3-42 29-74 (288)
194 2iks_A DNA-binding transcripti 39.3 74 0.0025 23.7 6.2 38 3-40 42-85 (293)
195 3ksm_A ABC-type sugar transpor 38.7 1.1E+02 0.0037 22.3 7.0 38 3-40 22-68 (276)
196 2vk2_A YTFQ, ABC transporter p 38.7 99 0.0034 23.2 6.9 38 3-40 24-67 (306)
197 3g85_A Transcriptional regulat 38.6 44 0.0015 24.9 4.8 59 3-67 34-98 (289)
198 3brs_A Periplasmic binding pro 38.6 71 0.0024 23.7 6.0 39 3-41 29-75 (289)
199 3s40_A Diacylglycerol kinase; 38.4 77 0.0026 24.5 6.3 70 3-78 31-108 (304)
200 3gv0_A Transcriptional regulat 38.3 66 0.0022 24.0 5.8 38 3-40 32-75 (288)
201 3dbi_A Sugar-binding transcrip 38.2 98 0.0033 23.7 6.9 38 3-40 85-128 (338)
202 2q62_A ARSH; alpha/beta, flavo 37.9 56 0.0019 24.7 5.2 49 3-52 57-118 (247)
203 2h0a_A TTHA0807, transcription 37.3 71 0.0024 23.5 5.8 58 3-67 21-85 (276)
204 1iow_A DD-ligase, DDLB, D-ALA\ 37.2 67 0.0023 24.3 5.7 36 3-38 26-61 (306)
205 3hno_A Pyrophosphate-dependent 37.1 4.8 0.00016 33.4 -1.0 49 27-75 100-161 (419)
206 3e3m_A Transcriptional regulat 36.9 96 0.0033 24.0 6.7 58 3-66 92-155 (355)
207 3hn7_A UDP-N-acetylmuramate-L- 36.7 75 0.0026 26.8 6.3 39 3-41 35-90 (524)
208 2pl1_A Transcriptional regulat 36.5 76 0.0026 19.6 5.7 64 3-68 16-80 (121)
209 2zuv_A Lacto-N-biose phosphory 36.1 17 0.00057 32.2 2.1 81 3-85 473-571 (759)
210 2f62_A Nucleoside 2-deoxyribos 36.0 75 0.0026 22.4 5.3 65 3-68 32-106 (161)
211 2a6a_A Hypothetical protein TM 36.0 14 0.00046 27.7 1.4 45 31-76 66-112 (218)
212 3rqi_A Response regulator prot 35.8 50 0.0017 22.9 4.4 64 3-68 23-87 (184)
213 1e5d_A Rubredoxin\:oxygen oxid 35.7 1.3E+02 0.0043 23.9 7.3 38 3-40 273-312 (402)
214 3snk_A Response regulator CHEY 35.6 29 0.00099 22.5 3.0 65 3-68 30-95 (135)
215 3a10_A Response regulator; pho 35.2 78 0.0027 19.4 5.5 63 3-67 17-80 (116)
216 2hsg_A Glucose-resistance amyl 35.0 55 0.0019 25.1 4.9 59 3-67 82-146 (332)
217 3kjx_A Transcriptional regulat 34.6 83 0.0029 24.2 6.0 58 3-66 90-153 (344)
218 2b4a_A BH3024; flavodoxin-like 34.6 51 0.0017 21.3 4.1 63 3-67 31-95 (138)
219 1ybx_A Conserved hypothetical 34.3 1.2E+02 0.004 21.1 6.0 50 133-184 66-115 (143)
220 3ce9_A Glycerol dehydrogenase; 34.1 13 0.00045 29.7 1.1 14 4-17 54-67 (354)
221 3d02_A Putative LACI-type tran 34.1 1E+02 0.0034 23.0 6.3 38 3-40 26-70 (303)
222 2dri_A D-ribose-binding protei 34.0 1.1E+02 0.0038 22.4 6.4 38 3-40 23-66 (271)
223 1mvo_A PHOP response regulator 34.0 83 0.0028 20.0 5.1 64 3-68 19-83 (136)
224 1ccw_A Protein (glutamate muta 33.8 45 0.0015 22.6 3.7 60 3-63 23-88 (137)
225 3o8l_A 6-phosphofructokinase, 33.4 8.3 0.00028 34.5 -0.2 50 27-76 485-548 (762)
226 1vlj_A NADH-dependent butanol 33.2 30 0.001 28.2 3.2 9 63-71 105-113 (407)
227 1gud_A ALBP, D-allose-binding 33.0 91 0.0031 23.2 5.8 38 3-40 23-68 (288)
228 1y80_A Predicted cobalamin bin 32.4 50 0.0017 24.0 4.1 37 3-40 108-148 (210)
229 2ayx_A Sensor kinase protein R 32.4 59 0.002 24.1 4.6 64 3-68 145-209 (254)
230 1srr_A SPO0F, sporulation resp 32.3 82 0.0028 19.7 4.8 64 3-68 19-83 (124)
231 1o2d_A Alcohol dehydrogenase, 31.8 28 0.00094 28.0 2.7 9 63-71 102-110 (371)
232 3ff4_A Uncharacterized protein 31.7 84 0.0029 20.9 4.8 15 58-72 103-117 (122)
233 3crn_A Response regulator rece 31.7 83 0.0028 20.1 4.8 63 3-67 19-82 (132)
234 3lk7_A UDP-N-acetylmuramoylala 31.6 68 0.0023 26.4 5.1 19 1-19 22-40 (451)
235 1k68_A Phytochrome response re 31.2 90 0.0031 19.8 4.9 65 3-68 18-93 (140)
236 3hdv_A Response regulator; PSI 30.9 55 0.0019 21.0 3.8 65 3-68 23-89 (136)
237 3ezx_A MMCP 1, monomethylamine 30.7 38 0.0013 25.0 3.1 38 4-42 113-154 (215)
238 3cz5_A Two-component response 30.6 87 0.003 20.5 4.9 65 3-68 21-87 (153)
239 1kgs_A DRRD, DNA binding respo 30.5 98 0.0033 21.9 5.4 64 3-68 18-82 (225)
240 3lzd_A DPH2; diphthamide biosy 30.4 76 0.0026 25.8 5.1 41 3-43 286-326 (378)
241 2qip_A Protein of unknown func 30.1 1E+02 0.0035 21.4 5.3 61 3-68 66-141 (165)
242 3jvd_A Transcriptional regulat 30.1 49 0.0017 25.5 3.9 37 3-40 86-128 (333)
243 1jq5_A Glycerol dehydrogenase; 30.0 29 0.00099 27.8 2.5 10 31-40 86-95 (370)
244 2yxb_A Coenzyme B12-dependent 29.6 50 0.0017 23.1 3.5 37 3-40 38-78 (161)
245 3kht_A Response regulator; PSI 29.4 76 0.0026 20.5 4.3 64 3-68 21-89 (144)
246 3lua_A Response regulator rece 28.9 40 0.0014 21.9 2.8 64 3-68 20-89 (140)
247 4e7p_A Response regulator; DNA 28.5 99 0.0034 20.2 4.9 65 3-68 36-102 (150)
248 1yio_A Response regulatory pro 28.4 73 0.0025 22.3 4.3 61 3-68 20-84 (208)
249 1dbw_A Transcriptional regulat 28.4 1.1E+02 0.0038 19.1 5.0 64 3-68 19-83 (126)
250 1gqo_A Dehydroquinase; dehydra 28.3 1.2E+02 0.0042 21.0 5.1 36 3-40 34-75 (143)
251 3r2g_A Inosine 5'-monophosphat 28.0 2.2E+02 0.0074 22.9 7.4 83 3-85 131-228 (361)
252 3n0r_A Response regulator; sig 27.5 1E+02 0.0036 23.4 5.3 62 3-67 176-240 (286)
253 1b93_A Protein (methylglyoxal 27.5 1.4E+02 0.0047 20.9 5.4 73 4-76 49-129 (152)
254 3lwz_A 3-dehydroquinate dehydr 27.4 1.5E+02 0.0052 20.8 5.5 36 3-40 41-82 (153)
255 1t5b_A Acyl carrier protein ph 27.2 1.6E+02 0.0054 20.5 6.6 19 3-21 25-45 (201)
256 3r6m_A YEAZ, resuscitation pro 26.9 18 0.0006 27.0 0.6 43 31-74 56-100 (213)
257 1ys7_A Transcriptional regulat 26.8 1.2E+02 0.0041 21.5 5.4 63 3-67 23-86 (233)
258 1uqr_A 3-dehydroquinate dehydr 26.7 1.1E+02 0.0039 21.4 4.8 36 3-40 35-76 (154)
259 2gel_A Putative GRAM negative 26.7 30 0.001 25.9 1.9 43 31-75 55-101 (231)
260 2him_A L-asparaginase 1; hydro 26.3 53 0.0018 26.5 3.4 35 31-65 253-289 (358)
261 3gyb_A Transcriptional regulat 26.0 1.1E+02 0.0036 22.6 5.0 37 3-40 27-68 (280)
262 1ta9_A Glycerol dehydrogenase; 25.8 40 0.0014 28.0 2.7 10 31-40 145-154 (450)
263 2hqr_A Putative transcriptiona 25.5 69 0.0024 22.8 3.8 62 3-69 16-77 (223)
264 1h05_A 3-dehydroquinate dehydr 25.3 1.3E+02 0.0043 21.0 4.7 36 3-40 36-77 (146)
265 1tjy_A Sugar transport protein 25.2 2.2E+02 0.0075 21.4 6.9 38 3-40 25-69 (316)
266 3r0j_A Possible two component 25.2 1.2E+02 0.0042 22.0 5.2 64 3-68 39-103 (250)
267 3gbv_A Putative LACI-family tr 25.1 84 0.0029 23.4 4.3 38 3-40 31-78 (304)
268 1jye_A Lactose operon represso 25.0 2.3E+02 0.008 21.7 7.6 37 3-39 83-126 (349)
269 2uyg_A 3-dehydroquinate dehydr 25.0 1.7E+02 0.0059 20.4 5.4 36 3-40 33-75 (149)
270 1ycg_A Nitric oxide reductase; 25.0 1.5E+02 0.0051 23.3 6.0 37 3-39 272-310 (398)
271 1zxx_A 6-phosphofructokinase; 24.1 11 0.00037 30.1 -1.0 17 27-43 89-105 (319)
272 2nqb_D Histone H2B; nucleosome 24.0 38 0.0013 22.9 1.8 26 160-185 45-70 (123)
273 3hs3_A Ribose operon repressor 23.9 90 0.0031 23.1 4.3 37 3-39 32-75 (277)
274 4dad_A Putative pilus assembly 23.5 61 0.0021 21.1 2.9 64 3-68 36-103 (146)
275 3to5_A CHEY homolog; alpha(5)b 23.5 1.5E+02 0.0051 19.8 4.9 64 3-68 28-95 (134)
276 3h5t_A Transcriptional regulat 23.1 2.4E+02 0.0083 21.7 6.9 30 11-40 101-137 (366)
277 2vyc_A Biodegradative arginine 23.0 92 0.0031 27.6 4.6 67 3-71 24-96 (755)
278 2qsj_A DNA-binding response re 22.7 1.1E+02 0.0037 20.0 4.2 66 3-69 19-87 (154)
279 1tzy_B Histone H2B; histone-fo 22.7 42 0.0014 22.8 1.8 26 160-185 48-73 (126)
280 1byk_A Protein (trehalose oper 22.5 1E+02 0.0035 22.3 4.3 38 3-40 24-67 (255)
281 3kto_A Response regulator rece 22.3 24 0.00083 23.0 0.6 60 3-68 22-88 (136)
282 3uhj_A Probable glycerol dehyd 22.3 39 0.0013 27.5 1.9 9 63-71 110-118 (387)
283 3usb_A Inosine-5'-monophosphat 22.0 2.2E+02 0.0075 23.9 6.6 56 30-85 317-388 (511)
284 1czn_A Flavodoxin; FMN binding 22.0 75 0.0025 21.8 3.2 25 12-38 29-53 (169)
285 3fok_A Uncharacterized protein 21.9 2.9E+02 0.01 21.7 6.8 51 4-56 206-260 (307)
286 1k66_A Phytochrome response re 21.6 1.1E+02 0.0037 19.6 3.9 64 3-68 22-100 (149)
287 1pfk_A Phosphofructokinase; tr 21.5 13 0.00045 29.6 -1.0 43 27-75 90-145 (320)
288 1agx_A Glutaminase-asparaginas 21.2 1E+02 0.0035 24.4 4.2 34 31-66 239-275 (331)
289 3lft_A Uncharacterized protein 21.0 2.5E+02 0.0086 20.8 6.4 56 3-67 23-90 (295)
290 4fe7_A Xylose operon regulator 21.0 1.6E+02 0.0055 23.4 5.4 57 3-67 46-104 (412)
291 2l2q_A PTS system, cellobiose- 20.9 1.3E+02 0.0043 19.3 4.0 36 3-39 24-59 (109)
292 1sqs_A Conserved hypothetical 20.9 1.4E+02 0.0048 21.9 4.8 17 4-20 25-42 (242)
293 2kyr_A Fructose-like phosphotr 20.9 1.5E+02 0.0053 19.5 4.3 36 3-40 28-69 (111)
294 3vav_A 3-methyl-2-oxobutanoate 20.6 1.1E+02 0.0039 23.6 4.2 33 31-70 186-218 (275)
295 4fx5_A VON willebrand factor t 20.4 1.5E+02 0.0051 24.6 5.2 52 34-85 183-241 (464)
296 3cfy_A Putative LUXO repressor 20.4 98 0.0033 19.9 3.5 63 3-67 20-83 (137)
297 3miz_A Putative transcriptiona 20.4 98 0.0034 23.1 3.9 38 3-40 36-79 (301)
298 3n8k_A 3-dehydroquinate dehydr 20.4 1.4E+02 0.0047 21.4 4.2 36 3-40 62-103 (172)
299 2qvg_A Two component response 20.2 94 0.0032 19.9 3.3 64 3-68 23-97 (143)
300 3lte_A Response regulator; str 20.1 61 0.0021 20.5 2.3 63 3-67 22-87 (132)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=100.00 E-value=3.6e-38 Score=240.64 Aligned_cols=174 Identities=42% Similarity=0.690 Sum_probs=145.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hh-HHHHHHhCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--IS-LQTVLELGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~-~~~~~~~~~~~PilGIC~G~Q~l~~~~g 78 (192)
++.++|+++|+++++++.++.+.+++...++||||++||++++.+.. .+ .+.+++++.++|+||||+|||+|+.++|
T Consensus 16 ~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGIC~G~QlL~~~~g 95 (195)
T 1qdl_B 16 NIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95 (195)
T ss_dssp HHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTT
T ss_pred HHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEEehHHHHHHHHhC
Confidence 47899999999999999865556677655799999999999987742 23 3555556789999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~ 157 (192)
|++.+... ..+|.+..+....+..+++++++++.+.++++|++.+.. ++++++++|++ +++.++|+++++++ ++
T Consensus 96 g~v~~~~~-~~~g~~~~v~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vla~s~~~g~i~a~~~~~~~-~~ 170 (195)
T 1qdl_B 96 AKIRRARK-VFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVDAISAEDNEIMAIHHEEYP-IY 170 (195)
T ss_dssp CEEEEEEE-EEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEEEEESSSCCEEEEEESSSS-EE
T ss_pred CEEeccCC-CcCCCceEEEECCCCHhHHHhcCCCceEEeccccchhhh---CCCCcEEEEEECCCCcEEEEEeCCCC-EE
Confidence 99998763 457777766654322227999998889999999999975 56889999999 89999999999876 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
|+|||||++.++.+.+||++|++
T Consensus 171 gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 171 GVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp EESSBTTSTTCTTHHHHHHHHHH
T ss_pred EEecCCCCCCCccHHHHHHHHHh
Confidence 99999999877899999999997
No 2
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=100.00 E-value=3.4e-36 Score=229.11 Aligned_cols=172 Identities=32% Similarity=0.619 Sum_probs=133.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc----cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+++++++++ .+.+++.. .+.+++|++|||+++.+.+.....++.+++++||||||+|||+|+.++
T Consensus 15 ~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~ 93 (192)
T 1i1q_B 15 NLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAY 93 (192)
T ss_dssp HHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEECcChHHHHHHh
Confidence 5799999999999999975 44455422 145679999999998876655455555678999999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~ 157 (192)
||++.+.. ...+|....+.. .++++|+++++.+.++++|++.+.. ++++++++|.+ ++.++++++.+++ ++
T Consensus 94 Gg~v~~~~-~~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~v~a~~-~~~~~ai~~~~~~-~~ 164 (192)
T 1i1q_B 94 GGYVGQAG-EILHGKATSIEH---DGQAMFAGLANPLPVARYHSLVGSN---VPAGLTINAHF-NGMVMAVRHDADR-VC 164 (192)
T ss_dssp SCCCCC----CCSSEEEEEEE---CCCGGGTTSCSSEEEEECCC---CC---CCTTCEEEEEE-TTEEEEEEETTTT-EE
T ss_pred CCEEEeCC-CcEecceeEEec---CCChHHhcCCCCcEEEechhhHhhh---CCCccEEEECC-CCcEEEEEECCCC-EE
Confidence 99998764 233454433322 3567999998899999999999865 55789999854 5789999988776 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
|+|||||++.++.|.++++||++.+.
T Consensus 165 gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 165 GFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp EESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCcccCCcccHHHHHHHHHHHh
Confidence 99999999988899999999998764
No 3
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=100.00 E-value=2.2e-35 Score=224.01 Aligned_cols=171 Identities=28% Similarity=0.471 Sum_probs=138.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
++.++++++|+++++++.+. +.+++...++||||++||+ ++.+.....+.+++. +.++|+||||+|+|+|+.++||+
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~ 92 (189)
T 1wl8_A 15 RIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGK 92 (189)
T ss_dssp HHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCE
T ss_pred HHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCc
Confidence 57899999999999999753 5566654579999999998 776655445666654 78899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.... .+| +..+... .++++|+.+++.+.++++|++.+.. ++++++++|+++++.+++++++++| ++|+|
T Consensus 93 v~~~~~~-~~G-~~~~~~~--~~~~l~~~~~~~~~~~~~h~~~v~~---l~~~~~vla~s~~g~i~a~~~~~~~-~~gvQ 164 (189)
T 1wl8_A 93 VGRGEKA-EYS-LVEIEII--DEXEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSETCPIEAMKHEELP-IYGVQ 164 (189)
T ss_dssp EEECSCC-SCE-EEEEEES--CC--CCTTSCSEEEEEECCSEEEEE---CCTTEEEEEEESSCSCSEEEESSSC-EEEES
T ss_pred eecCCCc-ccC-ceeEEEe--cCchHHhCCCCceEEEEEeeeehhh---CCCCcEEEEEcCCCCEEEEEeCCce-EEEEe
Confidence 9986532 344 3334333 3667888888888888999988765 5578999999999999999998866 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~ 182 (192)
||||++.++++.++|++|++.+
T Consensus 165 fHPE~~~~~~g~~l~~~f~~~~ 186 (189)
T 1wl8_A 165 FHPEVAHTEKGEEILRNFAKLC 186 (189)
T ss_dssp SCTTSTTSTTHHHHHHHHHHHH
T ss_pred cCCCcCCCcchHHHHHHHHHHH
Confidence 9999987778999999999865
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=6.1e-36 Score=231.08 Aligned_cols=173 Identities=25% Similarity=0.351 Sum_probs=140.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC-CCCCCCc--chh-HHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDS--GIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG-~~~~~~~--~~~-~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+++++++++ .+.+++. ++|||||+|| ++++++. ..+ .+.+ +++++|+||||+|||+|+.++
T Consensus 28 ~~~~~l~~~G~~~~vv~~~-~~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~--~~~~~PiLGIC~G~Qll~~~l 102 (212)
T 2a9v_A 28 REWRVLRELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYI--DDHNYPILGICVGAQFIALHF 102 (212)
T ss_dssp HHHHHHHHTTCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHH--HHCCSCEEEETHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHh--CCCEEEECCCCCCCCcccccchhHHHHH--HhCCCCEEEEChHHHHHHHHh
Confidence 6889999999999999975 3455555 6999999999 8988775 222 2223 357899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~ 157 (192)
||++.+... . ..++..+... .+++++++++..+.++++|++.+.. ++++++++|+++++.++|++.++++ ++
T Consensus 103 Gg~v~~~~~-~-~~G~~~v~~~--~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vlA~s~d~~i~ai~~~~~~-i~ 174 (212)
T 2a9v_A 103 GASVVKAKH-P-EFGKTKVSVM--HSENIFGGLPSEITVWENHNDEIIN---LPDDFTLAASSATCQVQGFYHKTRP-IY 174 (212)
T ss_dssp TCEEEEEEE-E-EEEEEEEEES--CCCGGGTTCCSEEEEEEEEEEEEES---CCTTEEEEEECSSCSCSEEEESSSS-EE
T ss_pred CCEEEcCCC-c-ccCceeeEEC--CCChhHhcCCCceEEEeEhhhhHhh---CCCCcEEEEEeCCCCEEEEEECCCC-EE
Confidence 999998752 2 3345555554 2567999888888999999999975 5688999999999999999998765 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
|+|||||++.++.+.+||++|++.+.+.+.
T Consensus 175 gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 175 ATQFHPEVEHTQYGRDIFRNFIGICASYRE 204 (212)
T ss_dssp EESSCTTSTTSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHhhh
Confidence 999999998777899999999998765543
No 5
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=225.82 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=130.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+++++++++ .+.+++...++|||||+||++++++.. .+.+.+ ++.++|+||||+|||+|+.++||
T Consensus 39 ~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Qll~~~~GG 115 (218)
T 2vpi_A 39 VIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVLGICYGMQMMNKVFGG 115 (218)
T ss_dssp HHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CCCCCGGG--GTSSCCEEEETHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccchhHHHHH--HHcCCCEEEEcHHHHHHHHHhCC
Confidence 5789999999999999975 456666655799999999998876432 122222 46789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... . +.++..+... ..++|+++++..+.++++|++.+.. ++++++++|++ ++.++++++++++ ++|+
T Consensus 116 ~v~~~~~-~-~~G~~~v~~~--~~~~l~~~l~~~~~v~~~H~~~v~~---l~~~~~vlA~s-~~~i~ai~~~~~~-i~gv 186 (218)
T 2vpi_A 116 TVHKKSV-R-EDGVFNISVD--NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS-GNIVAGIANESKK-LYGA 186 (218)
T ss_dssp CEEEEEE-C-SCEEEEEEEC--TTSGGGTTCCSEEEEEECSEEEESS---CCTTCEEEEEE-TTEEEEEEETTTT-EEEE
T ss_pred ceEeCCC-C-cccEEEEEEc--cCChhHhcCCCCcEEeehhhhHhhh---cCCCCEEEEEc-CCeEEEEEECCCC-EEEE
Confidence 9998763 2 3345556554 3578999998888999999999975 55789999999 6799999988766 9999
Q ss_pred eccCCCCCCCchHHHHHHHH-HHH
Q 029484 160 QFHPESIITTEGKTIVRNFI-KMI 182 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~-~~~ 182 (192)
|||||++.++.+.+||++|+ +.+
T Consensus 187 QfHPE~~~~~~g~~l~~~F~~~~~ 210 (218)
T 2vpi_A 187 QFHPEVGLTENGKVILKNFLYDIA 210 (218)
T ss_dssp SSCTTSTTSTTHHHHHHHHHTTTT
T ss_pred EcCCCCCCChhHHHHHHHHHHHHh
Confidence 99999987788999999999 554
No 6
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=100.00 E-value=3.8e-34 Score=236.85 Aligned_cols=172 Identities=23% Similarity=0.457 Sum_probs=137.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|++++|+++|+++++++++ .+.+++...++|||||+|||+++.+....++.+++ +++++||||||+|||+|+.++||+
T Consensus 203 ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~ 281 (379)
T 1a9x_B 203 NILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAK 281 (379)
T ss_dssp HHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhCcE
Confidence 6899999999999999975 56677776689999999999999876555666665 567899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+++.+. ++.+.++.... . ...+.+.++|++.|..++++ +++++++.+ +|+.++|++++++| ++|+
T Consensus 282 v~k~~~gh-~g~n~pv~~~~--~-------g~v~its~~H~~aV~~~~Lp-~~~~v~a~s~~Dg~ieai~~~~~p-i~gV 349 (379)
T 1a9x_B 282 TVKMKFGH-HGGNHPVKDVE--K-------NVVMITAQNHGFAVDEATLP-ANLRVTHKSLFDGTLQGIHRTDKP-AFSF 349 (379)
T ss_dssp EEEEEEEE-EEEEEEEEETT--T-------TEEEEEEEEEEEEECSTTCC-TTEEEEEEETTTCCEEEEEESSSS-EEEE
T ss_pred EEeccccc-ccCceeeEecC--C-------CcEEEEecCccceEecccCC-CCeEEEEEeCCCCcEEEEEECCCC-EEEE
Confidence 99986432 44444433110 0 12234567899999765554 679999998 78999999998876 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHHHHHh
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~~~~~ 186 (192)
|||||.+.++ ++.+||++|++++.+.+
T Consensus 350 QFHPE~~~~p~d~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 350 QGNPEASPGPHDAAPLFDHFIELIEQYR 377 (379)
T ss_dssp SSCTTCSSSCSTTTHHHHHHHHHHHHHH
T ss_pred EeCCcCCCCcccHHHHHHHHHHHHHHhh
Confidence 9999999887 68999999999987643
No 7
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=3.5e-35 Score=253.59 Aligned_cols=174 Identities=24% Similarity=0.405 Sum_probs=133.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+........++.++||||||+|||+|+.++||++
T Consensus 25 ~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V 103 (527)
T 3tqi_A 25 LIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKV 103 (527)
T ss_dssp HHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC---------CCCSTTTSSSCEEEETHHHHHHHHHSSSCB
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeE
Confidence 5889999999999999974 556667666789999999999987765321111125679999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCC--------cccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.+... .++| +..+.... .+++|++++. .+.++++|+|.|.. ++++++++|++++++++|+++.++
T Consensus 104 ~~~~~-~e~G-~~~v~~~~--~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~---lp~g~~v~A~s~~~~i~ai~~~~~ 176 (527)
T 3tqi_A 104 NRTAK-AEFG-HAQLRVLN--PAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE---LPPGFEATACTDNSPLAAMADFKR 176 (527)
T ss_dssp C------CEE-EEEEEESS--CTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS---CCTTCEEEEEETTEEEEEEECSSS
T ss_pred EeCCC-cccc-ceEEEEcC--CChhhcCCccccccccccceEEEEEcccchhc---cCCCCEEEEEeCCCcEEEEEcCCC
Confidence 98863 3344 44454432 4679999886 58899999999976 568999999999999999999877
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
+ +||+|||||++.++.|.+||+||+..+++
T Consensus 177 ~-~~GvQFHPE~~~t~~G~~ll~nF~~~i~~ 206 (527)
T 3tqi_A 177 R-FFGLQFHPEVTHTPQGHRILAHFVIHICQ 206 (527)
T ss_dssp C-EEEESBCSSSTTSTTHHHHHHHHHHTTSC
T ss_pred C-EEEEEeccccccccccchhhhhhhhhccc
Confidence 6 99999999999888999999999965543
No 8
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=2e-34 Score=248.89 Aligned_cols=171 Identities=25% Similarity=0.416 Sum_probs=141.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++... ..+. .++.++||||||+|||+|+.++||
T Consensus 22 ~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~~~~~~--~~~~g~PvLGIC~G~Qlla~~~GG 98 (525)
T 1gpm_A 22 LVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQY--VFEAGVPVFGVCYGMQTMAMQLGG 98 (525)
T ss_dssp HHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGG--GGTSSSCEEEETHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCcchHHH--HHHCCCCEEEEChHHHHHHHHcCC
Confidence 4789999999999999974 5677787668899999999999877542 1112 246789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCC--------cccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
++.+.. ..++| +..+... .+++||++++. .+.++++|++.|.. ++++++++|+++++.++|+++.
T Consensus 99 ~V~~~~-~~e~G-~~~v~~~--~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~---lp~g~~v~A~s~~~~i~ai~~~ 171 (525)
T 1gpm_A 99 HVEASN-EREFG-YAQVEVV--NDSALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPSDFITVASTESCPFAIMANE 171 (525)
T ss_dssp EEECCS-SCEEE-EEEEEEC--SCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCTTCEEEEECSSCSCSEEEET
T ss_pred EEEeCC-Ccccc-eEEEEeC--CCCHhhccCccccccccccceEEEEEccceeee---CCCCCEEEEECCCCCEEEEEEC
Confidence 999886 33444 3444443 25679999887 78899999999976 5689999999999999999998
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++ +||+|||||++.++.|.+||++|+..++
T Consensus 172 ~~~-i~gvQFHPE~~~~~~g~~ll~nF~~~i~ 202 (525)
T 1gpm_A 172 EKR-FYGVQFHPEVTHTRQGMRMLERFVRDIC 202 (525)
T ss_dssp TTT-EEEESBCTTSTTSTTHHHHHHHHHHTTS
T ss_pred CCC-EEEEecCCCCCcchhHHHHHHHHHHhhh
Confidence 766 9999999999988899999999996443
No 9
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=100.00 E-value=4.2e-34 Score=245.79 Aligned_cols=169 Identities=26% Similarity=0.435 Sum_probs=139.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++... ..+. .++.++||||||+|||+|+.++||
T Consensus 14 ~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~--~~~~~~PvLGIC~G~Qlla~~~GG 90 (503)
T 2ywb_A 14 LIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPDPR--LFSSGLPLLGICYGMQLLAQELGG 90 (503)
T ss_dssp HHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGG--GGCSSCCEEEETHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCcchHHH--HHhCCCCEEEECHHHHHHHHHhCC
Confidence 5889999999999999975 5678887667899999999999877542 1111 246789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... .++| +..+.... +++|++++..+.++++|++.|.. ++++++++|+++++.++|+++++++ +||+
T Consensus 91 ~v~~~~~-~e~G-~~~v~~~~---~~l~~~~~~~~~v~~~H~~~v~~---lp~g~~v~A~s~~~~i~ai~~~~~~-~~gv 161 (503)
T 2ywb_A 91 RVERAGR-AEYG-KALLTRHE---GPLFRGLEGEVQVWMSHQDAVTA---PPPGWRVVAETEENPVAAIASPDGR-AYGV 161 (503)
T ss_dssp EEECC----CEE-EEECSEEC---SGGGTTCCSCCEEEEECSCEEEE---CCTTCEEEEECSSCSCSEEECTTSS-EEEE
T ss_pred eEeeCCC-Cccc-eEEEEecC---cHHhhcCCCccEEEEECCCcccc---CCCCCEEEEEECCCCEEEEEeCCCC-EEEE
Confidence 9998762 3344 33343332 67999998889999999999976 5689999999999999999998766 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
|||||++.++.|.+||++|++.+
T Consensus 162 QFHPE~~~~~~g~~ll~~F~~~~ 184 (503)
T 2ywb_A 162 QFHPEVAHTPKGMQILENFLELA 184 (503)
T ss_dssp SBCTTSTTSTTHHHHHHHHHHHT
T ss_pred ecCCCcccccccHHHHHHHHHHh
Confidence 99999998889999999999543
No 10
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=2e-34 Score=249.98 Aligned_cols=175 Identities=25% Similarity=0.404 Sum_probs=141.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHH--hCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~--~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+. ..+.+.+ .++++|+||||+|||+|+.++
T Consensus 22 ~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~l 100 (556)
T 3uow_A 22 LIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQM 100 (556)
T ss_dssp HHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHh
Confidence 6899999999999999974 6677776668999999999999977542 2233332 356899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEccc-----------------------------CCCccccCC-CCccccccccccccccc
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEK-----------------------------GEDGLLAGL-SNPFTAGRYHSLVIEKE 127 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~l~~~~-~~~~~~~~~H~~~v~~~ 127 (192)
||++.+.. ..++|... +..... ..+++|+++ ++.+.++++|++.+..
T Consensus 101 GG~V~~~~-~~E~G~~~-l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~~~v~~~H~d~V~~- 177 (556)
T 3uow_A 101 NGEVKKSK-TSEYGCTD-VNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTK- 177 (556)
T ss_dssp TCEEEEEE-EEEEEEEE-EEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSEEEEEEEEEEEEEE-
T ss_pred CCcEecCC-CcccCCcc-eeeccCcccccccceecccccccccccccccccccccchhhcccccCceEEEEEccceeec-
Confidence 99999876 33455332 333221 134799999 8889999999999976
Q ss_pred CCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 128 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 128 ~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++++++++|+++++.++|+++++++ +||+|||||++.++.|.+||+||+..++
T Consensus 178 --lp~g~~vlA~s~~~~i~ai~~~~~~-i~GvQFHPE~~~~~~G~~ll~nFl~~i~ 230 (556)
T 3uow_A 178 --IPENFYLVSSSENCLICSIYNKEYN-IYGVQYHPEVYESLDGELMFYNFAYNIC 230 (556)
T ss_dssp --CCTTCEEEEEETTEEEEEEEETTTT-EEEESSCTTSTTSTTHHHHHHHHHTTTT
T ss_pred --cCCCcEEEEEeCCCCEEEEEECCCC-EEEEEcCCCCCccccchHHHHHHHHHhh
Confidence 5689999999999999999998776 9999999999988899999999995544
No 11
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=2.7e-33 Score=221.75 Aligned_cols=178 Identities=21% Similarity=0.299 Sum_probs=134.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC-HHHHhccCCCeEEECCCCC-CC--CCc--c-------h-----hHHHHHH-hCCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPG-AP--QDS--G-------I-----SLQTVLE-LGPTVP 62 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~-~~~~~~~~~dglii~GG~~-~~--~~~--~-------~-----~~~~~~~-~~~~~P 62 (192)
+++++++++|..+.++++.... ..++. .++|||||+||++ +| +.. . . .++.++. +++++|
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~P 110 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKP 110 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCC
Confidence 3678899999999999874321 12211 2899999999986 22 111 0 0 1233333 568999
Q ss_pred EEeeeHhHHHHHHHhCCeeeecCC-------c-----cccccceeeEEcccCCCccccCCCCcccccccccccccccCCC
Q 029484 63 LFGVCMGLQCIGEAFGGKIVRSPL-------G-----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP 130 (192)
Q Consensus 63 ilGIC~G~Q~l~~~~gg~v~~~~~-------~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~ 130 (192)
|||||+|||+|+.++||++.+... . ....++..+.... .+.+++.++..+.++++|++.|.. +
T Consensus 111 iLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~--~s~l~~~~~~~~~v~~~H~~~v~~---l 185 (254)
T 3fij_A 111 IFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEP--TSELAKHHPNKKLVNSLHHQFIKK---L 185 (254)
T ss_dssp EEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECT--TSSGGGTCCTTEEECCBCSCEESS---C
T ss_pred EEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCC--CChHHHhcCCcEEEEEeccchhhc---c
Confidence 999999999999999999987521 0 1123455555542 567888888888899999999975 5
Q ss_pred CCCeEEEEEcCCCceEEEeeC-CCCceEEEeccCCCCCC--CchHHHHHHHHHHHHHH
Q 029484 131 SDALEVTAWTEDGLIMAARHK-KYKHLQGVQFHPESIIT--TEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 131 ~~~~~~~a~s~~~~i~ai~~~-~~~~~~g~QfHPE~~~~--~~~~~l~~~f~~~~~~~ 185 (192)
+++++++|+++|+.++|++.+ ++|+++|+|||||++.+ +.+.+||++|++++.+.
T Consensus 186 ~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~ 243 (254)
T 3fij_A 186 APSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT 243 (254)
T ss_dssp CSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHH
Confidence 689999999999999999999 88779999999999865 46799999999887743
No 12
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.98 E-value=1.5e-31 Score=209.90 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=129.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcc--hh----HHHHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG--IS----LQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~--~~----~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++++..|+++.++++++.+ .+++. ++|||||+||++++++.. ++ .+.+++ +++++|+||||+|||+
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~~~~~~~~l~--~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~Ql 105 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQM 105 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHH
T ss_pred HHHHHHHhCCCcEEEeCCcCccccccchh--cCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHH
Confidence 5789999999999988764211 11222 799999999998887642 33 233443 4678999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKK 152 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~ 152 (192)
|+.++||++.+...+. ..++..+... ..+++++.++..+.++++|++.+. ++++++++|+++++.+++++.+
T Consensus 106 L~~alGG~v~~~~~g~-~~G~~~v~~~--~~~~l~~~~~~~~~~~~~H~~~v~----lp~~~~vlA~s~~~~iea~~~~- 177 (239)
T 1o1y_A 106 LAKVLGASVYRGKNGE-EIGWYFVEKV--SDNKFFREFPDRLRVFQWHGDTFD----LPRRATRVFTSEKYENQGFVYG- 177 (239)
T ss_dssp HHHHTTCCEEECTTCC-EEEEEEEEEC--CCCGGGTTSCSEEEEEEEESEEEC----CCTTCEEEEECSSCSCSEEEET-
T ss_pred HHHHcCCeEecCCCCC-ccccEEEEEC--CCCchHHhCCCCceeEeecCCccc----cCCCCEEEEEcCCCCEEEEEEC-
Confidence 9999999999987433 3345655532 367899989888999999999984 4578999999999999999987
Q ss_pred CCceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 153 YKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 153 ~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
+ ++|+|||||++ ..++++|++....
T Consensus 178 -~-i~gvQfHPE~~-----~~~~~~~~~~~~~ 202 (239)
T 1o1y_A 178 -K-AVGLQFHIEVG-----ARTMKRWIEAYKD 202 (239)
T ss_dssp -T-EEEESSBSSCC-----HHHHHHHHHHTHH
T ss_pred -C-EEEEEeCccCC-----HHHHHHHHHHhHH
Confidence 3 99999999995 4689999876554
No 13
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.97 E-value=6.4e-32 Score=238.80 Aligned_cols=166 Identities=25% Similarity=0.411 Sum_probs=129.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+++.++++|+.+++++++ .+.+++...++|||||+|||+++++... +.+.+ ++.++||||||+|||+|+.++||+
T Consensus 45 iar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~~g~PvLGIC~G~QlLa~~lGG~ 121 (697)
T 2vxo_A 45 IDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVLGICYGMQMMNKVFGGT 121 (697)
T ss_dssp HHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TTSSCCEEEEEHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--HhCCCCEEEECHHHHHHHHHhCCe
Confidence 678999999999999985 5677776668999999999999875331 22222 467899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+... .++| +..+... ..++||++++..+.++++|++.|.. ++++++++|++++ .++|+++.+++ +||+|
T Consensus 122 v~~~~~-~e~G-~~~v~~~--~~~~Lf~~l~~~~~v~~~H~~~V~~---lp~g~~vlA~s~~-~i~ai~~~~~~-i~GvQ 192 (697)
T 2vxo_A 122 VHKKSV-REDG-VFNISVD--NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARSGN-IVAGIANESKK-LYGAQ 192 (697)
T ss_dssp BCC---------CEEEEEC--TTSGGGTTCCSEEEECCCSSCCBSS---CCTTCEEEEEETT-EEEEEEETTTT-EEEES
T ss_pred EeecCC-Cccc-eEEEEec--CCChhhhcCCccCcceeecccceec---CCCCeEEEEEeCC-ceEEEEeCCCC-EEEEE
Confidence 998763 3455 4555554 2567999998888999999999975 5689999999965 99999998876 99999
Q ss_pred ccCCCCCCCchHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~ 180 (192)
||||++.++.|.+||++|+.
T Consensus 193 FHPE~~~t~~g~~ll~nFl~ 212 (697)
T 2vxo_A 193 FHPEVGLTENGKVILKNFLY 212 (697)
T ss_dssp SCTTSSSSTTHHHHHHHHHT
T ss_pred ecccCCCCccchhhhhhhhh
Confidence 99999988899999999993
No 14
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.97 E-value=8.7e-32 Score=210.94 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=130.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCC---cchh------HHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQD---SGIS------LQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~---~~~~------~~~~~~-~~~~~PilGIC~G 69 (192)
.+.+++++.|+++.+++.+... .+++. ++|+|||+|||+++.+ ..+| .+.+++ ++.++||||||+|
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~~~~p~~~~--~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG 93 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRYEKLPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLG 93 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGTCCCCSCGG--GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHCCCeEEEEeeeCCCCCCCCcc--ccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchH
Confidence 4678999999999999864221 11233 7999999999999743 2223 334444 5689999999999
Q ss_pred HHHHHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEE
Q 029484 70 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 148 (192)
Q Consensus 70 ~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai 148 (192)
||+|+.++||++.+... . ..++.++.... +.++++|.+++..+.++++|++... ++++++++|+++++.++++
T Consensus 94 ~QlL~~~~Gg~v~~~~~-~-~~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~~----lp~~~~vla~s~~~~~~a~ 167 (236)
T 3l7n_A 94 AQLMGVAYGADYLHSPK-K-EIGNYLISLTEAGKMDSYLSDFSDDLLVGHWHGDMPG----LPDKAQVLAISQGCPRQII 167 (236)
T ss_dssp HHHHHHHTTCCCEEEEE-E-EEEEEEEEECTTGGGCGGGTTSCSEEEEEEEEEEECC----CCTTCEEEEECSSCSCSEE
T ss_pred HHHHHHHhCCEEecCCC-c-eeeeEEEEEccCcccChHHhcCCCCcEEEEecCCccc----CCChheEEEECCCCCEEEE
Confidence 99999999999998763 2 33455666543 2357899999999999999998743 4578999999999999999
Q ss_pred eeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 149 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 149 ~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+.++ +++|+|||||++ ..++++|+....
T Consensus 168 ~~~~--~v~gvQfHPE~~-----~~~~~~~~~~~~ 195 (236)
T 3l7n_A 168 KFGP--KQYAFQCHLEFT-----PELVAALIAQED 195 (236)
T ss_dssp EEET--TEEEESSBSSCC-----HHHHHHHHHHCS
T ss_pred EECC--CEEEEEeCCCCC-----HHHHHHHHHhhh
Confidence 9875 499999999996 789999988754
No 15
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.97 E-value=3.2e-32 Score=214.69 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=126.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhH----HHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISL----QTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~----~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.+++++.|+++++++++..+ .+++. ++|+|||+||++++++..+++ +.++. ++.++||||||+|+|+|+
T Consensus 19 ~i~~~l~~~G~~v~v~~~~~~~~~p~~~~--~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~ 96 (250)
T 3m3p_A 19 HFGDFLAGEHIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLA 96 (250)
T ss_dssp HHHHHHHHTTCCEEEEEGGGTCCCCSCGG--GSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEeccCCCcCcCccc--cCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 4788999999999999864322 11233 799999999999987655443 23333 467899999999999999
Q ss_pred HHhCCeeeecCCccccccceeeEEccc-CCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 75 EAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 75 ~~~gg~v~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.++||+|.+.+. . ..+|..+..... ..+++| ++++.+.++++|++.+. ++++++++|+++++.++|++.++
T Consensus 97 ~~lGG~V~~~~~-~-e~G~~~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v~----lp~~~~vlA~s~~~~~~a~~~~~- 168 (250)
T 3m3p_A 97 KAMGGEVTDSPH-A-EIGWVRAWPQHVPQALEWL-GTWDELELFEWHYQTFS----IPPGAVHILRSEHCANQAYVLDD- 168 (250)
T ss_dssp HHTTCCEEEEEE-E-EEEEEEEEECSSHHHHHHH-SCSSCEEEEEEEEEEEC----CCTTEEEEEEETTEEEEEEEETT-
T ss_pred HHhCCEEEeCCC-C-ceeeEEEEEecCCCCcccc-cCCCccEEEEEccceee----cCCCCEEEEEeCCCCEEEEEECC-
Confidence 999999999863 2 344666665432 235688 78889999999999994 56899999999999999999986
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
+++|+|||||++ ..++.+|+..
T Consensus 169 -~~~GvQfHPE~~-----~~~~~~~l~~ 190 (250)
T 3m3p_A 169 -LHIGFQCHIEMQ-----AHMVREWCSI 190 (250)
T ss_dssp -TEEEESSCTTCC-----HHHHHHHHHH
T ss_pred -eeEEEEeCCcCC-----HHHHHHHHHh
Confidence 499999999996 3445555444
No 16
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.97 E-value=1.2e-31 Score=235.33 Aligned_cols=171 Identities=22% Similarity=0.345 Sum_probs=137.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHH----HHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQ----TVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~----~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
||++++++.|+++++++++.. .+ ..++|||||+|||+++.+.+ .++. .++. ++.++||||||+|||+|+.
T Consensus 461 ~l~~~l~~~G~~v~Vv~~d~~--~~--~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~ 536 (645)
T 3r75_A 461 MIAQQLSSLGLATEVCGVHDA--VD--LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNA 536 (645)
T ss_dssp HHHHHHHHTTCEEEEEETTCC--CC--GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCc--cc--ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
Confidence 689999999999999998642 12 23799999999999998876 3432 3333 4678999999999999999
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
++||++.+... ..+|....+... .++++.++++++.++++|...+.. ++++++++|+++++.++++++++
T Consensus 537 alGG~V~~~~~-~~~G~~~~i~~~---~~~l~~~~~~~~~v~~~h~~~~~~---lp~g~~v~A~s~dg~i~Ai~~~~--- 606 (645)
T 3r75_A 537 ILGIPLVRREV-PNQGIQVEIDLF---GQRERVGFYNTYVAQTVRDEMDVD---GVGTVAISRDPRTGEVHALRGPT--- 606 (645)
T ss_dssp HTTCCEEEEEE-EEEEEEEEEEET---TEEEEEEEEEEEEEBCSCSEEEET---TTEEEEEEECTTTCBEEEEEETT---
T ss_pred HhCCEEEcCCC-cccccceEEeee---cCcceecCCCcEEEEEehhhcccc---CCCCeEEEEEcCCCcEEEEEcCC---
Confidence 99999999863 345655555443 456777777788888777766543 45889999999999999999863
Q ss_pred eEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 029484 156 LQGVQFHPESIITTEGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 156 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~ 186 (192)
++|+|||||+..++.|.+||+||++.+.+.+
T Consensus 607 ~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~ 637 (645)
T 3r75_A 607 FSSMQFHAESVLTVDGPRILGEAITHAIRRE 637 (645)
T ss_dssp EEEESSBTTSTTCTTHHHHHHHHHHHHTTTT
T ss_pred EEEEEeCCeecCCcchHHHHHHHHHHHHhcc
Confidence 7999999999988899999999999986543
No 17
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.97 E-value=6.3e-32 Score=208.20 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=115.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHH---HHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQT---VLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~---~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
|+.++|+.+|+++++++. .+++. ++|+||+|| ++++.+....++. ++. .+.++||||||+|||+|++++
T Consensus 17 si~~al~~~G~~~~v~~~----~~~l~--~~D~lilPG-~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~ 89 (211)
T 4gud_A 17 SVKFAIERLGYAVTISRD----PQVVL--AADKLFLPG-VGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLS 89 (211)
T ss_dssp HHHHHHHHTTCCEEEECC----HHHHH--HCSEEEECC-CSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEE
T ss_pred HHHHHHHHCCCEEEEECC----HHHHh--CCCEEEECC-CCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHh
Confidence 789999999999998753 56666 689999975 4655443332221 221 357899999999999999999
Q ss_pred CCeeeecCCcc--------------------ccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEE
Q 029484 78 GGKIVRSPLGV--------------------MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137 (192)
Q Consensus 78 gg~v~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 137 (192)
|+++.+..... .+..+..+.. ...++++++++....+++.|++.+. .+..++
T Consensus 90 g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~H~~~v~------~~~~~~ 161 (211)
T 4gud_A 90 EEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQV--KEGHPLFNGIEPDAYFYFVHSFAMP------VGDYTI 161 (211)
T ss_dssp CCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEE--CTTCGGGTTCCTTCCEEEEESEECC------CCTTEE
T ss_pred CCcccccCCccccceeccceEEEcccCCcceeeccceeeee--eccChhhcCCCCCcEEEEEeeEEeC------CCCeEE
Confidence 98776643211 0111222222 2367799999988999999999875 245678
Q ss_pred EEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 138 AWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 138 a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
|+++++...+....++| ++|+|||||++ ++.|.+||+||++++.++
T Consensus 162 a~~~~g~~~~~~v~~~~-v~GvQFHPE~s-~~~G~~ll~nFl~~~ge~ 207 (211)
T 4gud_A 162 AQCEYGQPFSAAIQAGN-YYGVQFHPERS-SKAGARLIQNFLELRGEN 207 (211)
T ss_dssp EEEESSSEEEEEEEETT-EEEESSCGGGS-HHHHHHHHHHHHHC----
T ss_pred EEecCCCeEEEEEeCCC-EEEEEccCEec-CccHHHHHHHHHHHhccc
Confidence 88888875555555555 99999999986 778999999999987643
No 18
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.97 E-value=1e-30 Score=212.72 Aligned_cols=181 Identities=17% Similarity=0.298 Sum_probs=125.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCCcc------hhHHHHHHh-CC--CCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSG------ISLQTVLEL-GP--TVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~~~------~~~~~~~~~-~~--~~PilGIC~G~ 70 (192)
+++++++++|+.+++++.+ .+.+++... ++|||||+||++++.+.. .+++.+++. +. ++||||||+||
T Consensus 56 ~~~~~l~~~G~~~~vv~~~-~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 56 SYVKYLESAGARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp HHHHHHHHTTCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred HHHHHHHHCCCEEEEEecC-CCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 4679999999999999875 344554322 799999999998876541 123333332 22 69999999999
Q ss_pred HHHHHHhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcc--------cccccccccccccC-----CCCCCeEE
Q 029484 71 QCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPF--------TAGRYHSLVIEKES-----FPSDALEV 136 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~~H~~~v~~~~-----l~~~~~~~ 136 (192)
|+|+.++||++...... .++...++... ....+.+|+.++..+ .++.+|+++|..+. .+++++++
T Consensus 135 Qll~~a~GG~~~~~~~~-~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v 213 (315)
T 1l9x_A 135 EELSLLISGECLLTATD-TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNV 213 (315)
T ss_dssp HHHHHHHHSSCCCEEEE-EEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEE
T ss_pred HHHHHHhCCcccccccc-ccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCCEE
Confidence 99999999986543321 23332333332 223567888876432 23459999997220 03468999
Q ss_pred EEEcCCCceEEE---eeCCCCceEEEeccCCCCC---CC------------chHHHHHHHHHHHHHH
Q 029484 137 TAWTEDGLIMAA---RHKKYKHLQGVQFHPESII---TT------------EGKTIVRNFIKMIVRK 185 (192)
Q Consensus 137 ~a~s~~~~i~ai---~~~~~~~~~g~QfHPE~~~---~~------------~~~~l~~~f~~~~~~~ 185 (192)
+|+++|+.++++ ++++++ ++|+|||||+.. +. ++.+||++|++.+.+.
T Consensus 214 ~A~s~dg~ve~i~~i~~~~~~-i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~ 279 (315)
T 1l9x_A 214 LTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKN 279 (315)
T ss_dssp EEEEESSSCEEEEEEEESSSC-EEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCCEEEEEEeccCCCC-EEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999986666 666655 999999999864 12 3779999999988643
No 19
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=5.2e-30 Score=193.88 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=115.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch----hHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~----~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
++.++++++|+++.+++. .+++. ++||||++||++++++... +.+.++ ++++||||||+|||+|+.++
T Consensus 14 ~~~~~l~~~G~~~~~~~~----~~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilGIC~G~Qll~~~~ 85 (186)
T 2ywj_A 14 EHEEAIKKAGYEAKKVKR----VEDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILGTCAGMVLLSKGT 85 (186)
T ss_dssp HHHHHHHHTTSEEEEECS----GGGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEEETHHHHHHSSCC
T ss_pred HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEEECHHHHHHHHHh
Confidence 467899999999998874 23344 7899999999876543211 223333 78899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccC------CCccccCCCCcccccccccccccccCCC-CCCeEEEEEcCCCceEEEee
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKG------EDGLLAGLSNPFTAGRYHSLVIEKESFP-SDALEVTAWTEDGLIMAARH 150 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~i~ai~~ 150 (192)
||++.... ...+.... ...++ .+.++.++ +.+.++++|++.+.. + +++++++|++ |+.++|+++
T Consensus 86 gg~~~~lg--~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~~---l~~~~~~v~a~s-d~~~~a~~~ 156 (186)
T 2ywj_A 86 GINQILLE--LMDITVKR--NAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVDK---ILSDDVEVIARD-GDKIVGVKQ 156 (186)
T ss_dssp SSCCCCCC--CSSEEEET--TTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEEE---ECCTTCEEEEEE-TTEEEEEEE
T ss_pred CCCcCccC--CCceeEEe--ccCCCcccceecccccccC-CcEEEEEEecceeee---cCCCCeEEEEEE-CCEEEEEee
Confidence 99853221 11111000 00000 12355666 667889999999975 4 5789999999 788999997
Q ss_pred CCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 151 KKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 151 ~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+ +++|+|||||++. ++.+||++|++.+.
T Consensus 157 ~---~~~gvQfHPE~~~--~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 157 G---KYMALSFHPELSE--DGYKVYKYFVENCV 184 (186)
T ss_dssp T---TEEEESSCGGGST--THHHHHHHHHHHHT
T ss_pred C---CEEEEECCCCcCC--chhHHHHHHHHHHh
Confidence 4 4999999999863 58999999998864
No 20
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.96 E-value=3.9e-29 Score=192.57 Aligned_cols=168 Identities=14% Similarity=0.199 Sum_probs=126.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc--------chhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--------GISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~--------~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++|+.+|+++.+++..+ ++ .++|+|||+||.....+. ....+.+++ .++++||||||+|+|+
T Consensus 18 ~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~ql 91 (213)
T 3d54_D 18 DAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQI 91 (213)
T ss_dssp HHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHH
Confidence 46889999999999998631 22 379999999996543321 223444544 3578999999999999
Q ss_pred HHHH--hCCeeeecCCccccccceeeEEcccCCCccccCCCC--cccccccc---cccccccCCCCCCeEEEEEcCC---
Q 029484 73 IGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYH---SLVIEKESFPSDALEVTAWTED--- 142 (192)
Q Consensus 73 l~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~H---~~~v~~~~l~~~~~~~~a~s~~--- 142 (192)
|+.+ ++|++.+......+.++..+.... .++++++.++. .+.++.+| ++.+. ++++.++|++++
T Consensus 92 La~aGll~g~v~~~~~~~~~~g~~~v~~~~-~~~~l~~~~~~~~~~~~~~~H~~~s~~~~-----~~~~~~~a~~~~~ng 165 (213)
T 3d54_D 92 LIEMGLLKGALLQNSSGKFICKWVDLIVEN-NDTPFTNAFEKGEKIRIPIAHGFGRYVKI-----DDVNVVLRYVKDVNG 165 (213)
T ss_dssp HHHHTSSCSEEECCSSSSCBCCEEEEEECC-CSSTTSTTSCTTCEEEEECCBSSCEEECS-----SCCEEEEEESSCSSC
T ss_pred HHHcCCCCCCeecCCCCceEeeeEEEEeCC-CCCceeeccCCCCEEEEEeecCceEEEec-----CCCcEEEEEcCCCCC
Confidence 9999 999998876332356677776642 35778888874 46666688 55553 267899999876
Q ss_pred --CceEEEeeCCCCceEEEeccCCCCC-----CCchHHHHHHHHHHH
Q 029484 143 --GLIMAARHKKYKHLQGVQFHPESII-----TTEGKTIVRNFIKMI 182 (192)
Q Consensus 143 --~~i~ai~~~~~~~~~g~QfHPE~~~-----~~~~~~l~~~f~~~~ 182 (192)
+.++|+++++++ ++|+|||||++. .+.+.+||++|++.+
T Consensus 166 ~~~~i~a~~~~~~~-~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 166 SDERIAGVLNESGN-VFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp CGGGEEEEECSSSC-EEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred CccceeEEEcCCCC-EEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 489999986655 999999999986 368899999999875
No 21
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.96 E-value=4.6e-30 Score=205.08 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=119.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--------H-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--------~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
|.++..+.|.++.++..+... . +.+. ++|||||+||++.+...+ .+..++. ++.++||||||+|||+
T Consensus 32 L~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~--~~dgiil~GG~~~~~~~~-~~~~i~~~~~~~~PilGIC~G~Ql 108 (273)
T 2w7t_A 32 FEHCQIALQVRLDILYVDSEELEGPNADEARKALL--GCDGIFVPGGFGNRGVDG-KCAAAQVARMNNIPYFGVXLGMQV 108 (273)
T ss_dssp HHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHH--TCSEEEECCCCTTTTHHH-HHHHHHHHHHHTCCEEEETHHHHH
T ss_pred HHHHHHhcCCceEEeccChhhcccccchhHHHHHh--hCCEEEecCCCCCcCchh-HHHHHHHHHHCCCcEEEECcCHHH
Confidence 444455667778888764322 1 1222 899999999988754332 2333443 3568999999999999
Q ss_pred HHHHhCCeeeecC------Ccc----c----------------cccceeeEEcccCCCccccCCCCcccccc--cccccc
Q 029484 73 IGEAFGGKIVRSP------LGV----M----------------HGKSSLVYYDEKGEDGLLAGLSNPFTAGR--YHSLVI 124 (192)
Q Consensus 73 l~~~~gg~v~~~~------~~~----~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~H~~~v 124 (192)
|+.++||++.... .+. . +.+|+.+.... ..+.+++.++....+++ +|+|.+
T Consensus 109 l~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~-~~s~l~~~~~~~~~v~~~H~Hsy~v 187 (273)
T 2w7t_A 109 AVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIVE-KSSIMAKIYSKSNIVVERHRHRYEV 187 (273)
T ss_dssp HHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEECC-TTSHHHHHTTTCSEEEEEEEECCEE
T ss_pred HHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEec-CCcHHHHHhCCCceEEeeccccccc
Confidence 9999999984211 000 0 12233443321 13445555554444555 567877
Q ss_pred cccCC--C-CCCeEEEEEcCC----C-ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHH
Q 029484 125 EKESF--P-SDALEVTAWTED----G-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRK 185 (192)
Q Consensus 125 ~~~~l--~-~~~~~~~a~s~~----~-~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~ 185 (192)
+.+.+ + +++++++|+++| + .+++++++++|+++|+|||||++.++ .+.+||++|++.+.+.
T Consensus 188 ~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 188 NTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKK 257 (273)
T ss_dssp CGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTC
T ss_pred CHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHH
Confidence 54211 2 468999999988 5 89999999988777999999998766 3599999999988754
No 22
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.95 E-value=4.4e-29 Score=200.84 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=106.3
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCeeeecC------Ccc-----------ccc-
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSP------LGV-----------MHG- 91 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~v~~~~------~~~-----------~~~- 91 (192)
++|||||+||+++.... ...+.++. ++.++||||||+|||+|+.++||++.... .+. .+.
T Consensus 90 ~~dgiil~GG~~~~~~~-~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~ 168 (289)
T 2v4u_A 90 KADGILVPGGFGIRGTL-GKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNP 168 (289)
T ss_dssp HCSEEEECSCCSSTTHH-HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCT
T ss_pred hCCEEEecCCCCchhHH-HHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcc
Confidence 79999999998874332 23344444 46789999999999999999999985211 000 011
Q ss_pred ---------cceeeEEcccCCCccccCCCCccccc--ccccccccccCC--CC-CCeEEEEEcCCCc-eEEEeeCCCCce
Q 029484 92 ---------KSSLVYYDEKGEDGLLAGLSNPFTAG--RYHSLVIEKESF--PS-DALEVTAWTEDGL-IMAARHKKYKHL 156 (192)
Q Consensus 92 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~--~~H~~~v~~~~l--~~-~~~~~~a~s~~~~-i~ai~~~~~~~~ 156 (192)
++..+.... ..+.+++.++....++ .+|+|.|+++.+ ++ ++++++|+++|+. ++|++.+++|++
T Consensus 169 ~~~~~~~~~g~~~v~~~~-~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~ 247 (289)
T 2v4u_A 169 GNLGGTMRLGIRRTVFKT-ENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYF 247 (289)
T ss_dssp TCSSCBCEEEEEEEEESC-SCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCE
T ss_pred cccCCccccceEEEEEec-CCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeE
Confidence 123333321 1344555555434444 445666654321 34 7899999999997 999999988867
Q ss_pred EEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 157 QGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 157 ~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
+|+|||||+..++ ++.+||++|++.+.+...
T Consensus 248 lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~~~ 279 (289)
T 2v4u_A 248 VGVQFHPEFSSRPMKPSPPYLGLLLAATGNLN 279 (289)
T ss_dssp EEESSBGGGGCBTTBCCHHHHHHHHHHHTCHH
T ss_pred EEEECCCCCCCCCCchHHHHHHHHHHHHhhhh
Confidence 7999999998766 468999999998875443
No 23
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.95 E-value=2.1e-28 Score=210.10 Aligned_cols=184 Identities=17% Similarity=0.241 Sum_probs=121.5
Q ss_pred cHHHHHHhCCC----eEEEEeCCCCCHHHHh------ccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGY----HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~----~~~v~~~~~~~~~~~~------~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~ 70 (192)
|+.++|+.+|+ ++.+++.+ .+++. ..++||||++||++++...+ ..+.++. ++.++|+||||+||
T Consensus 307 Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~PiLGIClG~ 382 (545)
T 1s1m_A 307 SVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDAILVPGGFGYRGVEG-MITTARFARENNIPYLGICLGM 382 (545)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHH
T ss_pred HHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCEEEECCCCCCccchh-hHHHHHHHHHCCCcEEEECChH
Confidence 56777777765 45666543 33332 23799999999999876533 2233433 45789999999999
Q ss_pred HHHHHHhCCeeeecCCcc--c--cccceeeEEcc-------------------------------cCCCccccCCCCc--
Q 029484 71 QCIGEAFGGKIVRSPLGV--M--HGKSSLVYYDE-------------------------------KGEDGLLAGLSNP-- 113 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~--~--~~~~~~~~~~~-------------------------------~~~~~l~~~~~~~-- 113 (192)
|+|+.++||++..++... + .+..+++.... -.+++++..+...
T Consensus 383 Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~ 462 (545)
T 1s1m_A 383 QVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPT 462 (545)
T ss_dssp HHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSE
T ss_pred HHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCce
Confidence 999999999988654221 0 11111111100 0012222211111
Q ss_pred cccccccccccccc---CCCCCCeEEEEEcCCC-ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 029484 114 FTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 114 ~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 188 (192)
+...+.|.|.|+.. .+.+.+++++|+++|+ .+++++++++|+++|+|||||+..++ ++.+||++|++++.+.+..
T Consensus 463 v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 463 IVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 542 (545)
T ss_dssp EEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Confidence 23345667766432 2224789999999988 79999999998666999999999888 5899999999999876654
Q ss_pred h
Q 029484 189 D 189 (192)
Q Consensus 189 ~ 189 (192)
+
T Consensus 543 ~ 543 (545)
T 1s1m_A 543 Q 543 (545)
T ss_dssp C
T ss_pred h
Confidence 4
No 24
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.95 E-value=3e-28 Score=209.35 Aligned_cols=182 Identities=20% Similarity=0.182 Sum_probs=118.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.++....|+++.+++++... .++.. .++|||||+||+|++...+. +..++. +++++|+||||+|||+|+.+
T Consensus 323 L~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g~-i~~ir~a~e~~iPiLGICLGmQlL~~a 400 (550)
T 1vco_A 323 LRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGK-VRAAQYARERKIPYLGICLGLQIAVIE 400 (550)
T ss_dssp HHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHH-HHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhhh-HHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence 444555678899988664321 22222 37999999999998865433 334443 45789999999999999999
Q ss_pred hCCeeeecCCcc--c--cccceeeEE--cc-------------------cCCCccccCCCC--ccccccccccccccc--
Q 029484 77 FGGKIVRSPLGV--M--HGKSSLVYY--DE-------------------KGEDGLLAGLSN--PFTAGRYHSLVIEKE-- 127 (192)
Q Consensus 77 ~gg~v~~~~~~~--~--~~~~~~~~~--~~-------------------~~~~~l~~~~~~--~~~~~~~H~~~v~~~-- 127 (192)
+||++..+.... + .+...++.. .. -.+++++..+.. .+...+.|.|.|++.
T Consensus 401 ~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~ 480 (550)
T 1vco_A 401 FARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYV 480 (550)
T ss_dssp HHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHH
T ss_pred hCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHh
Confidence 999887654210 0 011111110 00 001222222111 112345677777432
Q ss_pred -CCCCCCeEEEEEcCCC------ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHh
Q 029484 128 -SFPSDALEVTAWTEDG------LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 128 -~l~~~~~~~~a~s~~~------~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~ 186 (192)
.++..+++++|+++|+ .+++++++++|+++|+|||||++.++ ++.+||++|++++.+.+
T Consensus 481 ~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 481 DGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ 547 (550)
T ss_dssp HHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHT
T ss_pred hccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhc
Confidence 2233589999999884 89999999988545999999999887 58999999999987653
No 25
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.94 E-value=1.1e-26 Score=176.93 Aligned_cols=166 Identities=21% Similarity=0.326 Sum_probs=112.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
..++++++|+++.+++. .+++. ++|+||++||+....+.. .+.+.+++ .++++|+||||+|+|+|+.++
T Consensus 16 ~~~~l~~~g~~~~~~~~----~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~ 89 (196)
T 2nv0_A 16 HIHAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEI 89 (196)
T ss_dssp HHHHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCC
T ss_pred HHHHHHHCCCEEEEeCC----hHHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHHh
Confidence 45789999999988864 23344 799999999986654321 12344444 468899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
|+++.+.. +...+.... ...+. .+..+.++++.+.++++|++.+.. ++++++++|++ |+.+++++..
T Consensus 90 gg~~~~~l-g~~~~~~~~--~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~---~~~~~~v~a~~-d~~~~a~~~~ 162 (196)
T 2nv0_A 90 AGSDNPHL-GLLNVVVER--NSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE---AGENVEVLSEH-NGRIVAAKQG 162 (196)
T ss_dssp C----CCC-CCSCEEEEC--CCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE---ECTTCEEEEEE-TTEEEEEEET
T ss_pred cCCCCCcc-cCCceeEec--cCCCcccccccCCcccccCCCceEEEEEecceecc---cCCCcEEEEEE-CCEEEEEEEC
Confidence 99764322 111111000 00000 123455566778888999998864 45789999998 6788999874
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
+++|+|||||.+.. ..++++|++.+.+.|+
T Consensus 163 ---~~~gvQfHPE~~~~---~~l~~~fl~~~~~~~~ 192 (196)
T 2nv0_A 163 ---QFLGCSFHPELTED---HRVTQLFVEMVEEYKQ 192 (196)
T ss_dssp ---TEEEESSCTTSSSC---CHHHHHHHHHHHHHHH
T ss_pred ---CEEEEEECCccCCc---hHHHHHHHHHHHhhhh
Confidence 49999999999632 4899999999876544
No 26
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.94 E-value=5.7e-28 Score=184.78 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=110.8
Q ss_pred cHHHHHHhCC-----CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g-----~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G 69 (192)
++.++|+++| +++++++..+ + .++|||||+|| +++.+... ..+.+++ +++++||||||+|
T Consensus 15 s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G 86 (201)
T 1gpw_B 15 NLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLG 86 (201)
T ss_dssp HHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChh
Confidence 5788999999 9999987531 2 38999999774 55433222 2234444 3678999999999
Q ss_pred HHHHHHHhC--CeeeecCCccccccceeeE---EcccCCCccccCCC-CcccccccccccccccCCCCCCeEEEEEcCC-
Q 029484 70 LQCIGEAFG--GKIVRSPLGVMHGKSSLVY---YDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTED- 142 (192)
Q Consensus 70 ~Q~l~~~~g--g~v~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~- 142 (192)
||+|+.++| |+ .+.. +...+...... ......++++...+ ..+.++++|++.+.. + +++++|++++
T Consensus 87 ~Qll~~~~g~~G~-~~~l-~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~~~v~~---~--~~~vla~s~~~ 159 (201)
T 1gpw_B 87 MQLLFEESEEAPG-VKGL-SLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVC---E--EEHVLGTTEYD 159 (201)
T ss_dssp HHTTSSEETTEEE-EECC-CSSSEEEEECCCSSCSEEEEEEEEESSSSCCEEEEEEESEEEEE---C--GGGEEEEEEET
T ss_pred HHHHHHhhccCCC-CCCc-ceeeeEEEEcCCCCCCcccceeeEeccCCCCCeEEEECcceecc---C--CCEEEEEEccC
Confidence 999999996 33 1111 11011110000 00000123333333 467889999999975 3 6889999876
Q ss_pred C-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 143 G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 143 ~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+ .+++++.++ + ++|+|||||++ .+.+.+||++|++.+.
T Consensus 160 g~~~~a~~~~~-~-i~gvQfHPE~~-~~~~~~l~~~f~~~~~ 198 (201)
T 1gpw_B 160 GEIFPSAVRKG-R-ILGFQFHPEKS-SKIGRKLLEKVIECSL 198 (201)
T ss_dssp TEEEEEEEEET-T-EEEESSCGGGS-HHHHHHHHHHHHHHSS
T ss_pred CceEEEEEECC-C-EEEEECCCccc-CHhHHHHHHHHHHHhh
Confidence 5 799999875 5 99999999997 6688999999998754
No 27
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=8.1e-27 Score=180.73 Aligned_cols=163 Identities=18% Similarity=0.309 Sum_probs=114.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.++|+.+|+++.+++. .+++. ++|||||+||++...+. ....+.+++ +++++||||||+|+|+|+.++
T Consensus 38 ~~~~l~~~G~~~~~~~~----~~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~ 111 (219)
T 1q7r_A 38 HVRAIEACGAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRI 111 (219)
T ss_dssp HHHHHHHTTCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEE
T ss_pred HHHHHHHCCCEEEEECC----HHHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 35788999999999875 23343 79999999998654321 112344444 467899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcc---cC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDE---KG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 148 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai 148 (192)
|+++.+.. +. .+..+.. +. .+..+.+++..+.++++|++.+.. ++++++++|++ |+.++++
T Consensus 112 gg~~~~~l-g~-----~~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v~~---l~~~~~v~a~s-dg~~ea~ 181 (219)
T 1q7r_A 112 VGYDEPHL-GL-----MDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE---AGDGVDVLATY-NDRIVAA 181 (219)
T ss_dssp ESSCCCCC-CC-----EEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE---ECTTCEEEEEE-TTEEEEE
T ss_pred CCCCcCCc-Cc-----cceEEEecCCCccccceecCcccCCCCCceEEEEEecceeec---cCCCcEEEEEc-CCEEEEE
Confidence 99774322 11 1111100 00 012334455567788899998865 45789999998 7889999
Q ss_pred eeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 149 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 149 ~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
+.. +++|+|||||++.. .+++++|++.+.+.+.
T Consensus 182 ~~~---~i~GvQfHPE~~~~---~~l~~~fl~~~~~~~~ 214 (219)
T 1q7r_A 182 RQG---QFLGCSFHPELTDD---HRLMQYFLNMVKEAKM 214 (219)
T ss_dssp EET---TEEEESSCGGGSSC---CHHHHHHHHHHHHHHH
T ss_pred EEC---CEEEEEECcccCCC---HHHHHHHHHHHHHhhh
Confidence 974 49999999999632 5899999999876543
No 28
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.1e-26 Score=197.07 Aligned_cols=174 Identities=18% Similarity=0.274 Sum_probs=111.7
Q ss_pred HHHHhCCCeEEEEeCCCCCH--------HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 5 KYMGELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 5 ~~l~~~g~~~~v~~~~~~~~--------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
++..+.+.++.+...+.... +.+. ++||||++||++.+...+ .++.++. +++++|+||||+|||+|+.
T Consensus 318 hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~--~~DgIIlpGG~G~~~~~g-~i~~ir~a~~~~~PiLGIClG~Qll~v 394 (535)
T 3nva_A 318 HASAYIGVRPKLIWIESTDLESDTKNLNEILG--NVNGIIVLPGFGSRGAEG-KIKAIKYAREHNIPFLGICFGFQLSIV 394 (535)
T ss_dssp HHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTT--SCSEEEECCCCSSTTHHH-HHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecchhccccccchhhhcc--CCCEEEECCCCCCccHHH-HHHHHHHHHHcCCcEEEECcchhHHHH
Confidence 33344566777765432211 1222 799999999998864433 2334443 5678999999999999999
Q ss_pred HhCCeeeecCCc--ccc---------------------c-----cceeeEEcccCCCccccCCC-Ccccccccccccccc
Q 029484 76 AFGGKIVRSPLG--VMH---------------------G-----KSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEK 126 (192)
Q Consensus 76 ~~gg~v~~~~~~--~~~---------------------~-----~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~ 126 (192)
++||++...... .+. | +.+++.... .+.+.+-++ ..+...+.|.|+|++
T Consensus 395 a~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~--gS~L~~iyG~~~I~erHrHryeVNs 472 (535)
T 3nva_A 395 EFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKE--GTIAYQLYGKKVVYERHRHRYEVNP 472 (535)
T ss_dssp HHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECT--TSHHHHHHTSSEEEEEEEECCEECH
T ss_pred HhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcC--CCcHHHHhCCCeeeecccccceech
Confidence 999998532210 000 0 111122221 111221111 122233445555532
Q ss_pred ---cCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 029484 127 ---ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 183 (192)
Q Consensus 127 ---~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~ 183 (192)
+.+.+.+++++|+++|+.++|++++++|+++|+|||||+.+++ .+.+||++|++++.
T Consensus 473 ~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 473 KYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533 (535)
T ss_dssp HHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHHT
T ss_pred HHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHHH
Confidence 1122478999999999999999999999889999999998776 58999999999874
No 29
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=6.4e-27 Score=178.88 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=111.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++|+++|+++++++.+ +++. ++|||||+| ++++.+. ....+.+++ ++.++||||||+|+|+|+
T Consensus 17 ~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G-~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~ 89 (200)
T 1ka9_H 17 SAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPG-QGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLY 89 (200)
T ss_dssp HHHHHHHHTTCEEEEESST----TSCS--SCSEEEECC-CSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTS
T ss_pred HHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECC-CCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHH
Confidence 4678999999999998742 2333 799999966 3544221 123445554 467899999999999999
Q ss_pred HH---hC---------CeeeecCC-ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 75 EA---FG---------GKIVRSPL-GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 75 ~~---~g---------g~v~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
.+ +| +++.+... ...+.+|+.+.... + +.+++. +.++++|++.+ . ..+. .+ |+++
T Consensus 90 ~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~----~-l~~~~~-~~~~~~Hs~~~-~---~~~~-~v-a~s~ 157 (200)
T 1ka9_H 90 EGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG----A-FAPLTG-RHFYFANSYYG-P---LTPY-SL-GKGE 157 (200)
T ss_dssp SEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG----G-GGGGTT-CEEEEEESEEC-C---CCTT-CC-EEEE
T ss_pred HhccccCCcCCccccccEEEECCCCCCCceeEEEEEech----h-hhcCCC-CCEEEeccccc-C---CCCC-cE-EEEE
Confidence 99 68 67766541 11233455555442 3 667766 78889999998 5 2233 45 7777
Q ss_pred C-C-ceEEEeeCCCCceEEEeccCCCCCCCchHHHH---HHHHHHH
Q 029484 142 D-G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIV---RNFIKMI 182 (192)
Q Consensus 142 ~-~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~---~~f~~~~ 182 (192)
+ + .++++..++ +++|+|||||++ .+.+.+|| ++|++.+
T Consensus 158 ~~g~~~~~~~~~~--~i~gvQfHPE~~-~~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 158 YEGTPFTALLAKE--NLLAPQFHPEKS-GKAGLAFLALARRYFEVL 200 (200)
T ss_dssp ETTEEEEEEEECS--SEEEESSCTTSS-HHHHHHHHHHHHHHC---
T ss_pred eCCeEEEEEEeeC--CEEEEecCCCcC-ccchhHHHHHHHHHHhhC
Confidence 6 5 688888765 499999999997 37788999 9998753
No 30
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-26 Score=175.09 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=108.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCC-CCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPT-VPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~-~PilGIC~G~Q~l~~ 75 (192)
++.++++++|+++++++.. +++. ++||||++||+....+. ..+.+.+++ .+++ +||||||+|||+|+.
T Consensus 16 ~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~ 89 (191)
T 2ywd_A 16 EHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAK 89 (191)
T ss_dssp HHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEE
T ss_pred HHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHH
Confidence 5788999999999998742 2444 79999999995322111 123344444 4578 999999999999999
Q ss_pred HhCC-eeeecCCccccccceeeEEcc---cC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCce
Q 029484 76 AFGG-KIVRSPLGVMHGKSSLVYYDE---KG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 145 (192)
Q Consensus 76 ~~gg-~v~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i 145 (192)
++|+ ++.+.. + +.+..... ++ .+..+.++ +.+.++++|++.+.. ++++++++|++ ++.+
T Consensus 90 ~~gg~~~~~~l-g-----~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~Hs~~v~~---l~~~~~~~a~~-~~~~ 158 (191)
T 2ywd_A 90 EIVGYPEQPRL-G-----VLEAWVERNAFGRQVESFEEDLEVEGL-GSFHGVFIRAPVFRR---LGEGVEVLARL-GDLP 158 (191)
T ss_dssp EETTCTTCCCC-C-----CEEEEEETTCSCCSSSEEEEEEEETTT-EEEEEEEESCCEEEE---ECTTCEEEEEE-TTEE
T ss_pred HhCCCCCCccc-c-----ccceEEEcCCcCCccccccccccccCC-CceeEEEEcccceec---cCCCcEEEEEE-CCEE
Confidence 9998 542211 1 01111000 00 01233334 556778899998864 44689999998 6889
Q ss_pred EEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 146 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 146 ~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++++.+ +++|+|||||++. +. +++++|++.+
T Consensus 159 ~a~~~~---~~~gvQfHPE~~~--~~-~l~~~f~~~~ 189 (191)
T 2ywd_A 159 VLVRQG---KVLASSFHPELTE--DP-RLHRYFLELA 189 (191)
T ss_dssp EEEEET---TEEEESSCGGGSS--CC-HHHHHHHHHH
T ss_pred EEEEEC---CEEEEEeCCCCCC--Cc-HHHHHHHHHh
Confidence 999975 3999999999863 33 9999999875
No 31
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.3e-25 Score=172.73 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=105.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.++|+.+|+++.+++. .+++. ++|+|||+||+....+. ..+.+.+++ .++++||||||+|+|+|+.++
T Consensus 35 ~~~~l~~~g~~~~~~~~----~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 108 (208)
T 2iss_D 35 HVEALHKLGVETLIVKL----PEQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKRI 108 (208)
T ss_dssp HHHHHHHTTCEEEEECS----GGGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEEE
T ss_pred HHHHHHHCCCEEEEeCC----hHHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHHc
Confidence 45788899999988864 23444 79999999985433221 112344544 467899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccC---------CCccccCCC-CcccccccccccccccCCCCCCeEEEEEcCCCceEE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKG---------EDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 147 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a 147 (192)
|++..+.. | +.+..+.... .+..+.+++ +.+.++++|++.+.. ++++++++|++ |+.+++
T Consensus 109 gg~~~~~l-----g-~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~v~a~~-d~~~~a 178 (208)
T 2iss_D 109 KNYSQEKL-----G-VLDITVERNAYGRQVESFETFVEIPAVGKDPFRAIFIRAPRIVE---TGKNVEILATY-DYDPVL 178 (208)
T ss_dssp C---CCCC-----C-CEEEEEETTTTCSGGGCEEEEECCGGGCSSCEEEEESSCCEEEE---ECSSCEEEEEE-TTEEEE
T ss_pred CCCCCCCc-----c-ccceEEEecCCCcccccccCCcccccCCCCceEEEEEeCccccc---CCCCcEEEEEE-CCEEEE
Confidence 98532211 1 1111111000 123344454 567888899988864 35789999988 688999
Q ss_pred EeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 148 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 148 i~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++.. + ++|+|||||.+.. .+++++|++.+
T Consensus 179 ~~~~--~-i~GvQfHPE~~~~---~~l~~~fl~~~ 207 (208)
T 2iss_D 179 VKEG--N-ILACTFHPELTDD---LRLHRYFLEMV 207 (208)
T ss_dssp EEET--T-EEEESSCGGGSSC---CHHHHHHHTTC
T ss_pred EEEC--C-EEEEEeCCCcCCc---HHHHHHHHHHh
Confidence 9864 4 9999999999743 38999998653
No 32
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.90 E-value=5.1e-24 Score=165.75 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=110.1
Q ss_pred HHHHHHhC---CCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCC-CCCEEeeeHhHH
Q 029484 3 FLKYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGP-TVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~---g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~-~~PilGIC~G~Q 71 (192)
..++|+.+ |+++.+++. .+++. ++|||||+||+.+..+. ..+.+.+++ ++. ++||||||+|||
T Consensus 18 ~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q 91 (227)
T 2abw_A 18 HINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI 91 (227)
T ss_dssp HHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH
T ss_pred HHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH
Confidence 46788888 988887763 35555 79999999997543221 122344444 467 899999999999
Q ss_pred HHHHHhCCeeeecCC--ccccccceeeEEccc---C------CCccccCC----CCcccccccccccccccCCCCCCeEE
Q 029484 72 CIGEAFGGKIVRSPL--GVMHGKSSLVYYDEK---G------EDGLLAGL----SNPFTAGRYHSLVIEKESFPSDALEV 136 (192)
Q Consensus 72 ~l~~~~gg~v~~~~~--~~~~~~~~~~~~~~~---~------~~~l~~~~----~~~~~~~~~H~~~v~~~~l~~~~~~~ 136 (192)
+|+.++|+++..... ....|. .++.+... . .+..+.++ +..+..++.|++.+.. +.++++++
T Consensus 92 lL~~~~gg~~~~~~~~~~~~lG~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~--~~~~~~~v 168 (227)
T 2abw_A 92 LLSKNVENIKLYSNFGNKFSFGG-LDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIRE--ILSDEVKV 168 (227)
T ss_dssp HTEEEEECCCSCCTTGGGSCCCC-EEEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEESCCEEEE--ECCTTCEE
T ss_pred HHHHHhcCCccccccccccccCc-eeEEEEecCCCccccccccccccccccccCCCceeEEEEEcceEee--cCCCCcEE
Confidence 999999987632100 011121 12221110 0 01122222 3456667778887764 21578999
Q ss_pred EEEcC-----CCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 029484 137 TAWTE-----DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 137 ~a~s~-----~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~ 186 (192)
+|+++ ++.+++++.. +++|+|||||++.. ..++++|++.+.+..
T Consensus 169 la~~~~~~~g~~~~~a~~~~---~v~gvQfHPE~~~~---~~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 169 LATFSHESYGPNIIAAVEQN---NCLGTVFHPELLPH---TAFQQYFYEKVKNYK 217 (227)
T ss_dssp EEEEEETTTEEEEEEEEEET---TEEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred EEEcccccCCCCceEEEEEC---CEEEEEECCeeCCC---cHHHHHHHHHHHhhh
Confidence 99986 6788899864 49999999999732 489999999886443
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.89 E-value=1.8e-24 Score=187.67 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=115.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++++++|+++.+++..+ ...+. ++|||||+|| |++..... ..+.+++ +++++||||||+|||+|+
T Consensus 19 ~~~~~l~~~G~~~~vv~~~~--~~~l~--~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~ 93 (555)
T 1jvn_A 19 SLTNAIEHLGYEVQLVKSPK--DFNIS--GTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALF 93 (555)
T ss_dssp HHHHHHHHTTCEEEEESSGG--GCCST--TCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTE
T ss_pred HHHHHHHHCCCEEEEECCcc--ccccc--cCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhh
Confidence 57889999999999987421 11133 7999999874 44322111 2334443 467899999999999999
Q ss_pred HHh------------CCeeeecCC---ccccccceeeEEcccCCCccccCCCCcccccccccccccccC----CCCCCeE
Q 029484 75 EAF------------GGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES----FPSDALE 135 (192)
Q Consensus 75 ~~~------------gg~v~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~----l~~~~~~ 135 (192)
.++ |+++.+... ...+.+|+.+... +++|+.++..+.++++|++.+...+ ++++++.
T Consensus 94 ~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~----~~L~~~l~~~~~~~~vHS~~~~~i~~~~~~L~~g~~ 169 (555)
T 1jvn_A 94 AGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS----ENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGW 169 (555)
T ss_dssp EEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC----TTCCTTCCTTSCEEEEESEECBCCHHHHHHHHHTTC
T ss_pred hhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc----CHHHhhCCCCceEEEEEEEEEEecccccccCCCCCE
Confidence 998 677776531 1223344444322 6789888877778888988875311 0124577
Q ss_pred EEEEcC---CCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 136 VTAWTE---DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 136 ~~a~s~---~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
++|+++ |+.+++++.. +++|+|||||++ .+.+.+||++|++.
T Consensus 170 vlA~s~~~~D~~i~ai~~~---~i~GvQFHPE~s-~~~g~~l~~~Fl~~ 214 (555)
T 1jvn_A 170 KIAKAKYGSEEFIAAVNKN---NIFATQFHPEKS-GKAGLNVIENFLKQ 214 (555)
T ss_dssp EEEEEEETTEEEEEEEEET---TEEEESSBGGGS-HHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCeEEEEEeC---CEEEEEeCcEec-ChhHHHHHHHHHhc
Confidence 888876 4679999942 499999999985 45678999999975
No 34
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.87 E-value=2.2e-22 Score=162.19 Aligned_cols=160 Identities=17% Similarity=0.084 Sum_probs=106.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCC--cchhHHHH----HH-hC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQD--SGISLQTV----LE-LG 58 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~--~~~~~~~~----~~-~~ 58 (192)
+.+.|.+.+.++++..+... +.+++...+|||+||+|||....+ ..+|...+ +. .+
T Consensus 66 f~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~ 145 (312)
T 2h2w_A 66 LLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRH 145 (312)
T ss_dssp HHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHH
Confidence 45667776766666433211 233443457999999999976543 33343332 22 35
Q ss_pred CCCCEEeeeHhHHHHHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEE
Q 029484 59 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVT 137 (192)
Q Consensus 59 ~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~ 137 (192)
.++|+||||+|+|+++.+++|...........| +.+..... .++|+.++++.+.+..+|+..+..+.+ ..++++++
T Consensus 146 ~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~G-v~~~~~~~--~~pL~~g~~~~f~vphsr~~e~~~~~v~~~pga~vL 222 (312)
T 2h2w_A 146 NVYSTMFICWAAQAGLYYFYGIPKYELPQKLSG-VYKHRVAK--DSVLFRGHDDFFWAPHSRYTEVKKEDIDKVPELEIL 222 (312)
T ss_dssp HEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEE-EEEEEESS--CCGGGTTCCSEEEEEEEEEEECCHHHHTTCC-CEEE
T ss_pred cCCcEEEECHHHHHHHHHhCCCccccCCCCEEE-EEEEEEcC--CCccccCCCCceEeeEEeccccCHHHccCCCCCEEE
Confidence 789999999999997777666332222123344 34444443 788999999999888875533322111 11589999
Q ss_pred EEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 138 AWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 138 a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
|.|+.+.+++++.++.. ++++|||||+.
T Consensus 223 A~S~~~~~q~~~~~~~~-~~~vQgHPEyd 250 (312)
T 2h2w_A 223 AESDEAGVYVVANKSER-QIFVTGHPEYD 250 (312)
T ss_dssp EEETTTEEEEEECSSSS-EEEECSCTTCC
T ss_pred EcCCCCcceEEEecCCC-EEEEECCCCCC
Confidence 99999999999986654 99999999996
No 35
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.87 E-value=5e-22 Score=159.74 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=106.8
Q ss_pred HHHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCC--cchhHHHH----HH-hC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQD--SGISLQTV----LE-LG 58 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~--~~~~~~~~----~~-~~ 58 (192)
+.+.|.+.+.++++..+... +.+++...+|||+||+|||....+ ..+|...+ +. .+
T Consensus 54 f~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~ 133 (301)
T 2vdj_A 54 LLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKT 133 (301)
T ss_dssp HHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHH
Confidence 45566666666665433211 244554458999999999976543 33343332 22 35
Q ss_pred CCCCEEeeeHhHHHHHHHhCC-eeeecCCccccccceeeEEcccCCCccccCCCCccccccccc-----ccccccCCCCC
Q 029484 59 PTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS-----LVIEKESFPSD 132 (192)
Q Consensus 59 ~~~PilGIC~G~Q~l~~~~gg-~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~-----~~v~~~~l~~~ 132 (192)
.++|+||||+|+|+++.+++| ...... ....| +.+.... ...++|+.++++.+.+..+|+ +.|.. . +
T Consensus 134 ~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~G-v~~~~~~-~~~~pL~~g~~~~f~~phsr~~~~~~~~v~~---~-p 206 (301)
T 2vdj_A 134 NVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFG-VFEHEVR-EQHVKLLQGFDELFFAVHSRHTEVRESDIRE---V-K 206 (301)
T ss_dssp HEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEE-EEEEEEC-CSSCGGGTTCCSEEEEEEEEEEECCHHHHHT---C-T
T ss_pred cCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEE-EEEEEec-CCCCccccCCCCceEeeeEeccCcCHHHccC---C-C
Confidence 789999999999997776666 333332 22344 3344443 357889999999998888754 44543 3 4
Q ss_pred CeEEEEEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 133 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 133 ~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
+++++|.|+.+.+++++.++.. ++++|||||+.
T Consensus 207 ga~vLA~S~~~~~~~~~~~~~~-~~~vQgHpEyd 239 (301)
T 2vdj_A 207 ELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYS 239 (301)
T ss_dssp TEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCC
T ss_pred CCEEEEeCCCCcceEEEecCCC-EEEEECCCCCC
Confidence 8999999999999999986654 99999999996
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.50 E-value=4.8e-14 Score=131.29 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=112.1
Q ss_pred cHHHHHHhCCCeEEEEeCCC--CCHHHHhccCCCeEEECCCCCCCCCc--ch-----------hHHHHHH-h-CCCCCEE
Q 029484 2 TFLKYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS--GI-----------SLQTVLE-L-GPTVPLF 64 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~--~~~~~~~~~~~dglii~GG~~~~~~~--~~-----------~~~~~~~-~-~~~~Pil 64 (192)
++.++++.+|+++.+++..+ ....++. ++|+||++||.+..+.. +. +.+.+++ + .+++|+|
T Consensus 1063 ~~~~A~~~aG~~~~~v~~~dl~~~~~~l~--~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvL 1140 (1303)
T 3ugj_A 1063 EMAAAFHRAGFDAIDVHMSDLLGGRIGLG--NFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLAL 1140 (1303)
T ss_dssp HHHHHHHHTTCEEEEEEHHHHHTTSCCGG--GCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHhCCceEEEeecccccCcccHh--hCCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEE
Confidence 46789999999999886411 0112233 79999999995543221 11 1222343 2 5799999
Q ss_pred eeeHhHHHHHHH---hCCe-----eeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---ccc-c---C
Q 029484 65 GVCMGLQCIGEA---FGGK-----IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEK-E---S 128 (192)
Q Consensus 65 GIC~G~Q~l~~~---~gg~-----v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~-~---~ 128 (192)
|||.|||+|+++ +.|. +.++........|..+.+.. .++++++++. ..+.++-.|+++ +.. + +
T Consensus 1141 GICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~-~~s~~~~~~~g~~~~i~vaHgEG~~~~~~~~~l~~ 1219 (1303)
T 3ugj_A 1141 GVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQ-SPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAA 1219 (1303)
T ss_dssp EETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECC-CSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHH
T ss_pred EECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECC-CCChhhhccCCCEEeeeeEeCCCCeeeCCHHHHHH
Confidence 999999999985 4555 77776665566666666653 4677888875 346666677633 111 1 1
Q ss_pred CCCCCeEEEEEc-------------CCC---ceEEEeeCCCCceEEEeccCCCCCCC--------------chHHHHHHH
Q 029484 129 FPSDALEVTAWT-------------EDG---LIMAARHKKYKHLQGVQFHPESIITT--------------EGKTIVRNF 178 (192)
Q Consensus 129 l~~~~~~~~a~s-------------~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~--------------~~~~l~~~f 178 (192)
|..++...+-+. +++ .|++|.+.+++ ++|++.||||...+ ...+||+|-
T Consensus 1220 l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Gr-vlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na 1298 (1303)
T 3ugj_A 1220 LESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNA 1298 (1303)
T ss_dssp HHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHH
T ss_pred HHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCC-EEEEcCChHHccccccccCCCcccCCCCcHHHHHHHH
Confidence 112333333332 223 39999999986 99999999997431 245677776
Q ss_pred HHHH
Q 029484 179 IKMI 182 (192)
Q Consensus 179 ~~~~ 182 (192)
.+++
T Consensus 1299 ~~w~ 1302 (1303)
T 3ugj_A 1299 RKQL 1302 (1303)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 37
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.51 E-value=2.2e-08 Score=77.49 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=50.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++.++|+.+|+++.+++..+...+++. +.|+|+++||...... ...+.+.+++ +++++|++|||.|+|+|+..
T Consensus 52 ~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 52 KTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred HHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 467889999998888764222235666 7899999996332110 0112334443 46789999999999999985
Q ss_pred h
Q 029484 77 F 77 (192)
Q Consensus 77 ~ 77 (192)
.
T Consensus 130 ~ 130 (229)
T 1fy2_A 130 I 130 (229)
T ss_dssp S
T ss_pred c
Confidence 4
No 38
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.47 E-value=4.6e-08 Score=74.48 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=49.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCH----HHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTV----EELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~----~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~ 70 (192)
++.++++.+|+++++++....+. +.+. +.|+|+++||.. ..... +.+.+++ +++++|++|||.|+
T Consensus 48 s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~~--~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 48 AGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGGNT--FFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp HHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCSCH--HHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCCCH--HHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 46788999999999886443334 2344 789999988632 22111 2333443 56799999999999
Q ss_pred HHHHHH
Q 029484 71 QCIGEA 76 (192)
Q Consensus 71 Q~l~~~ 76 (192)
|+++..
T Consensus 124 ~~l~~~ 129 (206)
T 3l4e_A 124 VITSPN 129 (206)
T ss_dssp HTTSSB
T ss_pred HHhccc
Confidence 999874
No 39
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.21 E-value=1.7e-06 Score=64.17 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHhCCCeEEEEeCC--------------CCCHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEee
Q 029484 4 LKYMGELGYHFEVYRND--------------ELTVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGV 66 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~--------------~~~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilGI 66 (192)
.+.|+++|+++.++... +...+++...+||+|+++||++... +...+.+.+++ .++++||.+|
T Consensus 28 ~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaI 107 (177)
T 4hcj_A 28 KKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGI 107 (177)
T ss_dssp HHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEe
Confidence 46788999999888653 1234444445899999999976432 23345555555 5688999999
Q ss_pred eHhHHHHHHH
Q 029484 67 CMGLQCIGEA 76 (192)
Q Consensus 67 C~G~Q~l~~~ 76 (192)
|.|-++|+.+
T Consensus 108 C~g~~~La~a 117 (177)
T 4hcj_A 108 GSGVVIMANA 117 (177)
T ss_dssp TTHHHHHHHT
T ss_pred cccHHHHHHC
Confidence 9999999986
No 40
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.21 E-value=1.8e-06 Score=64.81 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC----------------HHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++.....+ .+++...++|+|||+||.+.. .....+.+.+++ .++++||
T Consensus 42 ~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i 121 (193)
T 1oi4_A 42 PADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPV 121 (193)
T ss_dssp HHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEE
Confidence 467889999999988764321 112122368999999995421 122334555554 4688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.|||.|.++|+.+
T Consensus 122 ~aIC~G~~lLa~a 134 (193)
T 1oi4_A 122 FAICHGPQLLISA 134 (193)
T ss_dssp EEETTTHHHHHHH
T ss_pred EEECHHHHHHHHC
Confidence 9999999999997
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.02 E-value=4.8e-06 Score=64.27 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=52.1
Q ss_pred HHHHHhCCCeEEEEeCCCCC--------------------------------HHHHhccCCCeEEECCCCCC---CCC--
Q 029484 4 LKYMGELGYHFEVYRNDELT--------------------------------VEELKRKNPRGVLISPGPGA---PQD-- 46 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~--------------------------------~~~~~~~~~dglii~GG~~~---~~~-- 46 (192)
.+.|+.+|+++.++..+..+ .+++...+||+|||+||.+. ..+
T Consensus 31 ~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 110 (232)
T 1vhq_A 31 LLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFA 110 (232)
T ss_dssp HHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHH
T ss_pred HHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhhh
Confidence 56788999999988754211 12222236999999999764 222
Q ss_pred --------cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 47 --------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 47 --------~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
...+.+.+++ .++++||.+||.|-++|+.++.
T Consensus 111 ~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 111 SLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp HHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred ccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 2345555655 4689999999999999999843
No 42
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.00 E-value=4.2e-06 Score=61.14 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=51.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilG 65 (192)
..+.|+.+|+++.++..+.. +.+++...+||.||++||.+.. .....+.+.+++ .++++||.+
T Consensus 21 ~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~a 100 (168)
T 3l18_A 21 PLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVAS 100 (168)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEE
Confidence 45778889999988865321 1233322369999999997531 122334555554 568899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||.|.++|+.+
T Consensus 101 iC~G~~~La~a 111 (168)
T 3l18_A 101 ICHGPQILISA 111 (168)
T ss_dssp ETTTHHHHHHT
T ss_pred ECHhHHHHHHC
Confidence 99999999986
No 43
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.81 E-value=2e-05 Score=61.24 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=51.2
Q ss_pred HHHHHhCCCeEEEEeCCCC--------------------------------CHHHHhccCCCeEEECCCCCCC-------
Q 029484 4 LKYMGELGYHFEVYRNDEL--------------------------------TVEELKRKNPRGVLISPGPGAP------- 44 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~--------------------------------~~~~~~~~~~dglii~GG~~~~------- 44 (192)
.+.|+.+|+++.++..+.. +.+++...+||+|||+||.+..
T Consensus 48 ~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~ 127 (242)
T 3l3b_A 48 MLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLF 127 (242)
T ss_dssp HHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBSTT
T ss_pred HHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhhhh
Confidence 5678899999998865321 0112222369999999997531
Q ss_pred -------CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 45 -------QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 45 -------~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.....+.+.+++ .++++||.+||.|..+|+.+-
T Consensus 128 ~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 128 DEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp SCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 112345555655 468899999999999999985
No 44
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.79 E-value=1.8e-05 Score=59.38 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHhCCCeEEEEeCCCC---------------CHHHH-hccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~---------------~~~~~-~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~P 62 (192)
..+.|+.+|+++.++..+.. +.+++ ...+||.||++||.+... ....+.+.+++ .++++|
T Consensus 22 ~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~ 101 (197)
T 2rk3_A 22 PVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGL 101 (197)
T ss_dssp HHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCE
Confidence 45778899999988875321 23444 334899999999964321 12334455554 468899
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|.++|+.+
T Consensus 102 i~aiC~G~~~La~a 115 (197)
T 2rk3_A 102 IATICAGPTALLAH 115 (197)
T ss_dssp EEEETTTHHHHHHT
T ss_pred EEEECHHHHHHHHC
Confidence 99999999999986
No 45
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.77 E-value=1.2e-05 Score=60.82 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=51.7
Q ss_pred HHHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTV 61 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~ 61 (192)
..+.|+.+|+++.++..+.. +.+++...+||.|||+||.+.+.+ ...+.+.+++ .++++
T Consensus 21 ~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk 100 (205)
T 2ab0_A 21 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGR 100 (205)
T ss_dssp HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhccCHHHHHHHHHHHHcCC
Confidence 35678899999998865421 234443347999999999643321 2334455554 46889
Q ss_pred CEEeeeHhH-HHHHHH
Q 029484 62 PLFGVCMGL-QCIGEA 76 (192)
Q Consensus 62 PilGIC~G~-Q~l~~~ 76 (192)
||.+||.|. ++|+.+
T Consensus 101 ~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 101 IVAAICAAPATVLVPH 116 (205)
T ss_dssp EEEEETHHHHHHTTTT
T ss_pred EEEEECHhHHHHHHHC
Confidence 999999999 999875
No 46
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.73 E-value=2.2e-05 Score=58.37 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=49.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC-------------------CHHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~ 59 (192)
..+.|+.+|+++.++..+.. +.+++...+||.|||+||.+.. .....+.+.+++ ..+
T Consensus 28 ~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~ 107 (190)
T 2vrn_A 28 PRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDA 107 (190)
T ss_dssp HHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHc
Confidence 35678888998888765321 1222222379999999997433 223345555655 568
Q ss_pred CCCEEeeeHhHHHHHHH
Q 029484 60 TVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 60 ~~PilGIC~G~Q~l~~~ 76 (192)
++||.+||.|.++|+.+
T Consensus 108 gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 108 GKPIAAICHGPWSLSET 124 (190)
T ss_dssp TCCEEEC-CTTHHHHHT
T ss_pred CCEEEEECHhHHHHHhC
Confidence 89999999999999996
No 47
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=97.62 E-value=0.0001 Score=64.81 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=54.1
Q ss_pred cHHHHHHhCCCeEEEEeCCC-----CCHHHHhccCCCeEEECCCCCCC----------CCcchhHHHHHH-hCCCCCEEe
Q 029484 2 TFLKYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGAP----------QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~-----~~~~~~~~~~~dglii~GG~~~~----------~~~~~~~~~~~~-~~~~~PilG 65 (192)
.+.++|+++|+.+.++.... ...++.....||+|||+||.... ......+..+++ +..+|||-+
T Consensus 556 ~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAA 635 (688)
T 3ej6_A 556 ALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAA 635 (688)
T ss_dssp HHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence 35788999999999997532 12333333479999999996541 222345555554 678999999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||-|-++|..+
T Consensus 636 Ichgp~lL~~A 646 (688)
T 3ej6_A 636 VGSAKKALQSI 646 (688)
T ss_dssp EGGGHHHHHHT
T ss_pred eCccHHHHHHc
Confidence 99999999986
No 48
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.62 E-value=4e-05 Score=57.08 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHhCCCeEEEEeCCC-CC--------------HHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~--------------~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+. .+ .+++...+||.||++||.... .....+.+.+++ .++++||
T Consensus 24 ~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i 103 (190)
T 4e08_A 24 AADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLI 103 (190)
T ss_dssp HHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEE
Confidence 4578899999999987643 11 233333369999999984322 122334455554 4688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||.|.++|+.+
T Consensus 104 ~aiC~G~~~La~a 116 (190)
T 4e08_A 104 AAICAAPTVLAKH 116 (190)
T ss_dssp EEETTTHHHHHHT
T ss_pred EEECHHHHHHHHC
Confidence 9999999999985
No 49
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=97.56 E-value=0.00014 Score=54.99 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=49.4
Q ss_pred HHHHHHhC-CCeEEEEeCCCC-------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeee
Q 029484 3 FLKYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~~~~-------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC 67 (192)
..+.|+.. |+++.++..+.. +.+++ ..++|.||++||.+.......+.+.+++ .++++||.+||
T Consensus 22 ~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC 100 (206)
T 3f5d_A 22 LASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAIC 100 (206)
T ss_dssp HHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEEC
Confidence 35566666 777777754311 12222 1379999999998654433345566665 46899999999
Q ss_pred HhHHHHHHH
Q 029484 68 MGLQCIGEA 76 (192)
Q Consensus 68 ~G~Q~l~~~ 76 (192)
.|..+|+.+
T Consensus 101 ~G~~~La~a 109 (206)
T 3f5d_A 101 GAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999986
No 50
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=97.55 E-value=5.9e-05 Score=57.55 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=51.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH---------------------------HHHhccCCCeEEECCCCCCC---CCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTV---------------------------EELKRKNPRGVLISPGPGAP---QDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~---------------------------~~~~~~~~dglii~GG~~~~---~~~~~~~~ 52 (192)
..+.|+.+|+++.++..+..+. +++...+||+|||+||.+.. .....+.+
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 3567888999999887542210 11112269999999997753 23344556
Q ss_pred HHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 53 TVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 53 ~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+++ .++++||.+||.|-++|+.+
T Consensus 114 ~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 114 VLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHCCCEEEEEChHHHHHHHc
Confidence 6665 46889999999999999876
No 51
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.55 E-value=5.1e-05 Score=55.69 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred hCCCeEEEEeCCC---------------CCHHHH--hccCCCeEEECCC--C-CCCC-----CcchhHHHHHH-hCCCCC
Q 029484 9 ELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P-GAPQ-----DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 9 ~~g~~~~v~~~~~---------------~~~~~~--~~~~~dglii~GG--~-~~~~-----~~~~~~~~~~~-~~~~~P 62 (192)
+.|+++.++..+. ...+++ ...+||.||++|| . +... ....+.+.+++ .++++|
T Consensus 27 ~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~ 106 (175)
T 3cne_A 27 ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKM 106 (175)
T ss_dssp HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCE
T ss_pred eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCE
Confidence 5677777776531 122343 2237999999999 5 3321 12234455554 468899
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|.++|+.+
T Consensus 107 i~aiC~G~~~La~a 120 (175)
T 3cne_A 107 MIGHCAGAMMFDFT 120 (175)
T ss_dssp EEEETTHHHHHHHT
T ss_pred EEEECHHHHHHHHC
Confidence 99999999999986
No 52
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=97.52 E-value=0.00012 Score=54.43 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=50.0
Q ss_pred HHHHHHh-CCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC-CCcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~-~~~~~~~~~~~~-~~~~~PilG 65 (192)
..+.|+. .|+++.++..+.. +.+++...++|.|||+||.+.. .....+.+.+++ ..+++||.+
T Consensus 20 ~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~a 99 (188)
T 2fex_A 20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAG 99 (188)
T ss_dssp HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEE
Confidence 3466777 8888888865321 1222222269999999996532 223345555554 457899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||.|.++|+.+
T Consensus 100 iC~G~~~La~a 110 (188)
T 2fex_A 100 ICAAASALGGT 110 (188)
T ss_dssp ETHHHHHHHHT
T ss_pred ECHHHHHHHHC
Confidence 99999999986
No 53
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.41 E-value=0.00015 Score=60.13 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=51.4
Q ss_pred HHHHHHhCCCeEEEEeCCC------------------------------CCHHHHhccCCCeEEECCCCCCC--CCcchh
Q 029484 3 FLKYMGELGYHFEVYRNDE------------------------------LTVEELKRKNPRGVLISPGPGAP--QDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~------------------------------~~~~~~~~~~~dglii~GG~~~~--~~~~~~ 50 (192)
..+.|+.+|+++.++..+. .+.+++...+||.||++||.+.. .....+
T Consensus 224 ~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~~~~~~~~~~~ 303 (396)
T 3uk7_A 224 PFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHV 303 (396)
T ss_dssp HHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHHH
T ss_pred HHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcchhhhccCHHH
Confidence 4567888899998885432 12233322379999999997522 223345
Q ss_pred HHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 51 LQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 51 ~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.+++ .++++||.+||.|.++|+.+
T Consensus 304 ~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 304 LNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp HHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 555554 56899999999999999986
No 54
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=97.34 E-value=7.9e-05 Score=58.08 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+|+||.+.. .....+.+.+++ .++++||.+||.|-.+|+.+
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 69999999998652 122334555554 56899999999999999876
No 55
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00025 Score=58.77 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=51.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC------------------------------CHHHHhccCCCeEEECCCCCCC--CCcchh
Q 029484 3 FLKYMGELGYHFEVYRNDEL------------------------------TVEELKRKNPRGVLISPGPGAP--QDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dglii~GG~~~~--~~~~~~ 50 (192)
..+.|+.+|+++.++..... +.+++...+||.|+++||.+.. .....+
T Consensus 31 ~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~ 110 (396)
T 3uk7_A 31 PFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASV 110 (396)
T ss_dssp HHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHHH
T ss_pred HHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEEEECCCcchhhcccCHHH
Confidence 35678999999988865421 1222222379999999996532 122344
Q ss_pred HHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 51 LQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 51 ~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.+++ ..+++||.+||.|.++|+.+
T Consensus 111 ~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 111 VELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp HHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 555554 56899999999999999986
No 56
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=97.29 E-value=0.00027 Score=62.25 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=53.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCCCCC-------------------CCCcchhHHHHHH-
Q 029484 2 TFLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGA-------------------PQDSGISLQTVLE- 56 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG~~~-------------------~~~~~~~~~~~~~- 56 (192)
.+.+.|+++|++++++.....+ .++....+||+|||+||... ....+..++.+++
T Consensus 549 ~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~ 628 (688)
T 2iuf_A 549 KLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDA 628 (688)
T ss_dssp HHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHH
Confidence 4678899999999999753211 12223337999999999533 1233445566655
Q ss_pred hCCCCCEEeeeHhHHHHHHH
Q 029484 57 LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 57 ~~~~~PilGIC~G~Q~l~~~ 76 (192)
+..+|||-+||.|-++|..+
T Consensus 629 ~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 629 FRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp HHHTCEEEEEGGGHHHHHHT
T ss_pred HHcCCEEEEECchHHHHHHc
Confidence 56789999999999998875
No 57
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=97.29 E-value=0.00011 Score=57.14 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+|+||.+.. .....+.+.+++ .++++||.+||.|-.+|+.+
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 69999999997642 222334455554 56899999999999999876
No 58
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.25 E-value=0.00068 Score=51.33 Aligned_cols=68 Identities=7% Similarity=0.083 Sum_probs=46.0
Q ss_pred hCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCCCCCCC-cchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 9 ELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 9 ~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~~~~~~-~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
..|+++.++..+..+ .+++...+||.|||+||.+.... ...+.+.+++ ..++++|.+||.|..+
T Consensus 38 ~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~ 117 (212)
T 3efe_A 38 LAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDA 117 (212)
T ss_dssp CCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHH
T ss_pred CCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHHHH
Confidence 567888887653211 23333337999999999764321 2234455554 4678999999999999
Q ss_pred HHHH
Q 029484 73 IGEA 76 (192)
Q Consensus 73 l~~~ 76 (192)
|+.+
T Consensus 118 La~a 121 (212)
T 3efe_A 118 LANM 121 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9986
No 59
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=97.18 E-value=0.00011 Score=57.04 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|||+||.+... ....+.+.+++ .++++||.+||.|-.+|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 689999999977432 22345555655 46899999999999988876
No 60
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=97.15 E-value=0.00037 Score=57.25 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=50.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC----------------HHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+..+ .+++...+||.|||+||.+.. .....+.+.+++ ..+++||
T Consensus 29 p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~I 108 (365)
T 3fse_A 29 PCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLV 108 (365)
T ss_dssp HHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhccCCHHHHHHHHHHHHCCCEE
Confidence 457788899998888654221 111222258999999997532 223345555654 5688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||.|..+|+.+
T Consensus 109 aAIC~G~~lLA~A 121 (365)
T 3fse_A 109 AAVCHGPQVLIEG 121 (365)
T ss_dssp EEETTTHHHHHHT
T ss_pred EEECHHHHHHHHc
Confidence 9999999999986
No 61
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=97.12 E-value=0.00012 Score=55.41 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHHhCCCeEEEEeCCC-CC--------------HHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~--------------~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+. .+ .+++...+||.|||+||.+.+ .....+.+.+++ ..+++||
T Consensus 28 ~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i 107 (208)
T 3ot1_A 28 IVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLV 107 (208)
T ss_dssp HHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEE
Confidence 4567888999998887642 11 223222379999999996432 123345555554 5689999
Q ss_pred EeeeHhH-HHHHHH
Q 029484 64 FGVCMGL-QCIGEA 76 (192)
Q Consensus 64 lGIC~G~-Q~l~~~ 76 (192)
.+||.|. .+|+.+
T Consensus 108 ~aiC~G~a~~La~a 121 (208)
T 3ot1_A 108 AAICATPALVFAKQ 121 (208)
T ss_dssp EEETTHHHHTTTTT
T ss_pred EEEChhHHHHHHHC
Confidence 9999998 888874
No 62
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=97.08 E-value=0.00031 Score=62.30 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=52.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEE
Q 029484 2 TFLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~Pil 64 (192)
.+.+.|+.+|+++.++..... ..++....+||+|||+|| +.. ......+..+++ +..++||-
T Consensus 618 ~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIA 696 (753)
T 3ttv_A 618 AILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIADNGDANYYLMEAYKHLKPIA 696 (753)
T ss_dssp HHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEE
Confidence 467889999999999865321 122222236999999999 432 233445566665 56899999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|-++|+.+
T Consensus 697 AIC~Gp~lLa~A 708 (753)
T 3ttv_A 697 LAGDARKFKATI 708 (753)
T ss_dssp EEGGGGGGGGGG
T ss_pred EECchHHHHHHc
Confidence 999999999887
No 63
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=97.03 E-value=0.00056 Score=51.44 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.5
Q ss_pred cCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.++|.|||+||.+.......+.+.+++ ..++++|.+||.|..+|+.+
T Consensus 70 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 70 KELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEEeCCCchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 379999999997654333445555654 45789999999999999987
No 64
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=96.70 E-value=0.00082 Score=53.52 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred cCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 30 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+||+|||+||.+...+ ...+.+.+++ .+++++|.+||.|-.+|+.+-
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 37999999999765422 2335555655 468899999999999888763
No 65
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.64 E-value=0.00079 Score=50.90 Aligned_cols=46 Identities=9% Similarity=-0.004 Sum_probs=35.2
Q ss_pred CCCeEEECCCCCCCC----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+... ....+++.+++ ..++++|.+||-|..+|+.+
T Consensus 74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 799999999965322 23445555655 46889999999999999987
No 66
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=96.58 E-value=0.0011 Score=58.77 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=51.8
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pil 64 (192)
..+.|+.+|+++.++..... ..+++...+||+|||+||.+.. .....+++.+++ .+.++||.
T Consensus 553 p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~Ia 632 (715)
T 1sy7_A 553 AYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIG 632 (715)
T ss_dssp HHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEE
Confidence 45778899999998865321 1122222368999999994322 123345555554 56889999
Q ss_pred eeeHhHHHHHHHhC
Q 029484 65 GVCMGLQCIGEAFG 78 (192)
Q Consensus 65 GIC~G~Q~l~~~~g 78 (192)
+||.|..+|+.++|
T Consensus 633 AIC~G~~lLA~AlG 646 (715)
T 1sy7_A 633 ATGEAVDLVAKAIA 646 (715)
T ss_dssp EETTHHHHHHHHHC
T ss_pred EECHHHHHHHHccC
Confidence 99999999999864
No 67
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=96.42 E-value=0.0027 Score=48.77 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|+|+||++.. .....+++.+++ ..++++|.+||-|..+|+.+
T Consensus 65 ~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 65 PLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 68999999997642 233445566665 57899999999999999986
No 68
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=95.91 E-value=0.0043 Score=48.33 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=48.2
Q ss_pred HHHH-HhCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCC-CCC--CCcchhHHHHHH-hCCCCCEE
Q 029484 4 LKYM-GELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGP-GAP--QDSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 4 ~~~l-~~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~-~~~--~~~~~~~~~~~~-~~~~~Pil 64 (192)
.+.| +..|+++.++..+..+ .+++. ..||.|||+||. +.. .....+++.+++ ..++++|.
T Consensus 43 ~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~Ia 121 (253)
T 3ewn_A 43 HCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYIT 121 (253)
T ss_dssp HHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEE
Confidence 4556 4568888877653211 12222 157999999997 532 233445566665 57899999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|..+|+.+
T Consensus 122 aICtG~~lLa~A 133 (253)
T 3ewn_A 122 SVCSGSLILGAA 133 (253)
T ss_dssp EETTHHHHHHHT
T ss_pred EEChHHHHHHHc
Confidence 999999999986
No 69
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=95.77 E-value=0.0055 Score=45.65 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=30.6
Q ss_pred CCCeEEECCCCCCC---CCcchhHHHHHHh-C-CCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP---QDSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~---~~~~~~~~~~~~~-~-~~~PilGIC~G~Q~l~~~ 76 (192)
+||.|||+||.+.. .+...+.+.++++ . .++++-.||.|.. |+.+
T Consensus 73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a 122 (194)
T 4gdh_A 73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT 122 (194)
T ss_dssp HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence 58999999995432 2334455666664 3 4789999999984 4444
No 70
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=95.64 E-value=0.0019 Score=48.86 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+|.|||+||.+.. .....+++.+++ ..++++|.+||-|-.+|+.+
T Consensus 65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 47999999997532 123345555554 45789999999999999986
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=95.62 E-value=0.003 Score=48.73 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=33.8
Q ss_pred CCCeEEECCC-CCCC--CCcchhHHHHHHhCCCC-CEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPG-PGAP--QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG-~~~~--~~~~~~~~~~~~~~~~~-PilGIC~G~Q~l~~~ 76 (192)
++|.|||+|| ++.. .....+.+.+ ...+++ +|.+||-|-.+|+.+
T Consensus 80 ~~D~liVPGG~~g~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 80 EQDVVLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GCSEEEECCCTTHHHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred CCCEEEEcCCccCHhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 7999999999 4432 1233445556 666677 999999999999986
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=94.97 E-value=0.013 Score=46.64 Aligned_cols=72 Identities=11% Similarity=0.250 Sum_probs=47.1
Q ss_pred HHHHHHhCCC-eEEEEeCCCCC---HH----HHhccCCCeEEECCCCCCCC----CcchhHHHHHH-hCCC-CCEEeeeH
Q 029484 3 FLKYMGELGY-HFEVYRNDELT---VE----ELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~---~~----~~~~~~~dglii~GG~~~~~----~~~~~~~~~~~-~~~~-~PilGIC~ 68 (192)
+.++++++|+ ++.+++..... .+ .+. +.|+|+++||..... ....+.+.+++ +.++ .|+.|+|.
T Consensus 76 ~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSA 153 (291)
T 3en0_A 76 YQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSA 153 (291)
T ss_dssp HHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETH
T ss_pred HHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCH
Confidence 4567888999 78888663221 11 233 789999999844221 11223444544 5677 99999999
Q ss_pred hHHHHHHH
Q 029484 69 GLQCIGEA 76 (192)
Q Consensus 69 G~Q~l~~~ 76 (192)
|.-+++..
T Consensus 154 GA~i~~~~ 161 (291)
T 3en0_A 154 GAAVMGHH 161 (291)
T ss_dssp HHHTTSSE
T ss_pred HHHhhhHh
Confidence 99988763
No 73
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=93.67 E-value=1.9 Score=33.23 Aligned_cols=173 Identities=12% Similarity=0.025 Sum_probs=87.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC----HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH--HHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL--QCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~----~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~--Q~l~~ 75 (192)
|.+.|++.|++|+++..++.. .+.+. +||.||+.|............+.+++ +.+|..++||=.|. +....
T Consensus 37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~ 114 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKK 114 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHH
T ss_pred HHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCcCCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHh
Confidence 467889999999997643221 23344 89999985321111122233444444 67899999996663 44556
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEE-cCCC-----ceEEEe
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW-TEDG-----LIMAAR 149 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~-s~~~-----~i~ai~ 149 (192)
.+|+... .++. ..+....+.+ ...++++.++++..+....-..|.... ..+.+...++.. ..++ ++.-.+
T Consensus 115 llGg~f~-~~~~-~~~~~~~v~v-~~~~HPit~gl~~~f~~~dee~Y~~~~-~~p~~~~~vl~~~~~~G~~~~~p~~w~~ 190 (252)
T 1t0b_A 115 LMGTTCN-LKWR-EADEKERLWV-VAPGHPIVEGIGPYIELEQEEMYGEFF-DIPEPDETIFISWFEGGEVFRSGCTFTR 190 (252)
T ss_dssp HHCSCCC-CEEE-EEEEEEEEEE-SCTTSGGGTTCCSEEEEEEEEEEESCC-CSCCCSEEEEEEEETTSCEEEEEEEEEE
T ss_pred hhCCccc-CCCc-cCCceEEEEE-CCCCChhhcCCCCCcEeccceeeeecc-CCCCCCceEEeeeccCCccccEEEEEEE
Confidence 7787632 1110 0122222322 345788999998666554221221110 002223334432 2344 233333
Q ss_pred eCCCCceEEE-ecc-CC-CCCCCchHHHHHHHHHHHH
Q 029484 150 HKKYKHLQGV-QFH-PE-SIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 150 ~~~~~~~~g~-QfH-PE-~~~~~~~~~l~~~f~~~~~ 183 (192)
..++ ++.+ ..| ++ ....++-++++.+=+..+.
T Consensus 191 -g~GR-vfY~~lGH~~~~~~~~p~~~~ll~~gI~WAa 225 (252)
T 1t0b_A 191 -GKGK-IFYFRPGHETYPTYHHPDVLKVIANAVRWAA 225 (252)
T ss_dssp -TTEE-EEEECCCCTTSCGGGCHHHHHHHHHHHHHHC
T ss_pred -CCcc-EEEECCCCCCCcccCCHHHHHHHHHHHHHHc
Confidence 4444 5555 599 65 3223344555555555443
No 74
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=92.76 E-value=0.11 Score=40.91 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=39.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.++|++.|+++.+.... ...+. ++|.+|..||.| .+++..+.+...+||+||-.|.
T Consensus 45 l~~~L~~~g~~v~~~~~~---~~~~~--~~DlvIvlGGDG------T~L~aa~~~~~~~PilGIN~G~ 101 (278)
T 1z0s_A 45 IEEALKRLEVEVELFNQP---SEELE--NFDFIVSVGGDG------TILRILQKLKRCPPIFGINTGR 101 (278)
T ss_dssp HHHHHHHTTCEEEEESSC---CGGGG--GSSEEEEEECHH------HHHHHHTTCSSCCCEEEEECSS
T ss_pred HHHHHHHCCCEEEEcccc---ccccC--CCCEEEEECCCH------HHHHHHHHhCCCCcEEEECCCC
Confidence 678999999998876532 12222 789999999954 4455555543229999998873
No 75
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=89.97 E-value=0.43 Score=37.41 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHHHhCCCeEEEEeCC----------CCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRND----------ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~----------~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.++|++.|+++.+.... ....++.. .++|.||+.||.| .+++..+.+ ..++|+|||=.|.
T Consensus 26 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GGDG------T~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 26 LYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGGDG------NMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp HHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSCHH------HHHHHHHHHTTSSCEEEEBCSSS
T ss_pred HHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcCcH------HHHHHHHHhhcCCCCEEEEECCC
Confidence 678899999998776310 00112222 2689999999954 445555543 4579999997653
No 76
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=89.51 E-value=3.4 Score=32.29 Aligned_cols=174 Identities=9% Similarity=0.050 Sum_probs=89.1
Q ss_pred HHHHHHhCC-CeEEEEeCCC-----CCH-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHH---
Q 029484 3 FLKYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQ--- 71 (192)
Q Consensus 3 l~~~l~~~g-~~~~v~~~~~-----~~~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q--- 71 (192)
|.+.|++.| ++|++..... ... +.| .+||.||+.- .+... .....+.+.+ +++|.+++|+..+.-
T Consensus 25 l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-~~~~l-~~~~~~~l~~yV~~Ggglv~~H~a~~~~~ 100 (281)
T 4e5v_A 25 LKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-NGDSW-PEETNRRFLEYVQNGGGVVIYHAADNAFS 100 (281)
T ss_dssp HHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-CSSCC-CHHHHHHHHHHHHTTCEEEEEGGGGGSCT
T ss_pred HHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-CCCcC-CHHHHHHHHHHHHcCCCEEEEecccccCC
Confidence 667888888 9999986310 001 122 3899999643 22221 2233444443 678999999987643
Q ss_pred ---HHHHHhC-Cee------------------eec-C--CccccccceeeEE-cccCCCccccCCCCccccc--cccccc
Q 029484 72 ---CIGEAFG-GKI------------------VRS-P--LGVMHGKSSLVYY-DEKGEDGLLAGLSNPFTAG--RYHSLV 123 (192)
Q Consensus 72 ---~l~~~~g-g~v------------------~~~-~--~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--~~H~~~ 123 (192)
.-...+| |.. ... . ....|+......+ ....++++.++++..+... .+....
T Consensus 101 ~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~~v~v~~~~HPit~Gl~~~~~~~~dE~Y~~~ 180 (281)
T 4e5v_A 101 KWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGRDKVHPVVKGLPLKWRHAKDELYDRM 180 (281)
T ss_dssp TCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEEEEEESCSSSTTTTTSCSEEEEEEECCCBSC
T ss_pred CCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceEEEEEcCCCCchhhCCCCcccccccCCcccc
Confidence 2335667 532 110 0 0011232222222 2345789999998754421 222221
Q ss_pred ccccCCCCCCeEEEEEcCC----------CceEEEeeC-CCCceEEEecc-------CCCCCCCchHHHHHHHHHHHHH
Q 029484 124 IEKESFPSDALEVTAWTED----------GLIMAARHK-KYKHLQGVQFH-------PESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 124 v~~~~l~~~~~~~~a~s~~----------~~i~ai~~~-~~~~~~g~QfH-------PE~~~~~~~~~l~~~f~~~~~~ 184 (192)
.. +.++..+|++... .++...... .++-+|....| +|....+.=++++.+=+..+..
T Consensus 181 ~~----p~~~~~VL~t~~~~~~~~~~g~~~Pv~W~~~~g~GRvFyt~lGH~~~~w~~~~~~~~p~f~~ll~~gi~Waa~ 255 (281)
T 4e5v_A 181 RG----PGNIRDILYTAYSDKETNGSGREEPLVFTVDYGNARIFHTMLGHAGATTEDNIAMQCTGFQVLLLRGAEWAAT 255 (281)
T ss_dssp BS----CCCEEEEEEEEECCGGGTCCSSEEEEEEEECSTTCEEEEECCCCCCSSSSSCHHHHBHHHHHHHHHHHHHHHH
T ss_pred cC----CCCCCEEEEEEeccCcCCCCCCcceEEEEEEeCCeeEEEECCCCcccccCCccccCCHHHHHHHHHHHHHHhC
Confidence 11 3356778886532 134444322 23347778888 4443222335555555555543
No 77
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=87.83 E-value=0.38 Score=37.50 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC---CCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~---~~~PilGIC~G~ 70 (192)
+.++|++.|+++. ..++|.||..||.| .++...+.+. .++|+|||=.|.
T Consensus 20 l~~~l~~~g~~v~-------------~~~~D~vv~lGGDG------T~l~aa~~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 20 MIAGFGEYDMEYD-------------DVEPEIVISIGGDG------TFLSAFHQYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp HHHHHTTSSCEEC-------------SSSCSEEEEEESHH------HHHHHHHHTGGGTTTCEEEEEESSS
T ss_pred HHHHHHHCCCEeC-------------CCCCCEEEEEcCcH------HHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 5677888888771 12689999999954 4455555542 389999997763
No 78
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=87.07 E-value=1.7 Score=31.52 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
|.++|++.|+++.....-..+.+.+.. .++|.||.+||-|-..++- ..+.+.+ ++ +++.+.---++.|-.
T Consensus 28 l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~-T~ea~a~~~~--~~l~~~~e~~~~i~~ 104 (172)
T 3kbq_A 28 IGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDM-TVEGFAKCIG--QDLRIDEDALAMIKK 104 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCC-HHHHHHHHHT--CCCEECHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccc-hHHHHHHHcC--CCeeeCHHHHHHHHH
Confidence 678899999988655322223333321 1589999999966544433 2233332 33 555555555666666
Q ss_pred HhC
Q 029484 76 AFG 78 (192)
Q Consensus 76 ~~g 78 (192)
.++
T Consensus 105 ~~~ 107 (172)
T 3kbq_A 105 KYG 107 (172)
T ss_dssp HHC
T ss_pred HHc
Confidence 665
No 79
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=87.07 E-value=3.8 Score=27.45 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|.+++++...+.+.+++. ++|+||+..
T Consensus 20 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~g~ 54 (137)
T 2fz5_A 20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILLGC 54 (137)
T ss_dssp HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEEEC
T ss_pred HHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEEEc
Confidence 45667778999999988766666666 788887754
No 80
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=86.98 E-value=0.46 Score=37.69 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----------------HH-----HHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----------------VE-----ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----------------~~-----~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~ 59 (192)
+.++|++.|.++.+....... .. +....++|.+|+.||.| .++...+.+ ..
T Consensus 25 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~a~~~~~~~ 98 (307)
T 1u0t_A 25 VEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDG------TFLRAAELARNA 98 (307)
T ss_dssp HHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECHH------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCCH------HHHHHHHHhccC
Confidence 678899999998776432110 00 01122689999999955 344444432 24
Q ss_pred CCCEEeeeHh
Q 029484 60 TVPLFGVCMG 69 (192)
Q Consensus 60 ~~PilGIC~G 69 (192)
++|+|||-.|
T Consensus 99 ~~pvlgi~~G 108 (307)
T 1u0t_A 99 SIPVLGVNLG 108 (307)
T ss_dssp TCCEEEEECS
T ss_pred CCCEEEEeCC
Confidence 6899999776
No 81
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=86.34 E-value=0.15 Score=36.40 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCCCC---cchhHHHHHHh-CCCCCEEeeeH
Q 029484 31 NPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCM 68 (192)
Q Consensus 31 ~~dglii~GG~~~~~~---~~~~~~~~~~~-~~~~PilGIC~ 68 (192)
++|.|||.||-..|.- .....+.+.++ +....++|||+
T Consensus 84 ~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 84 NVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence 7899999999776643 33444445554 34566999995
No 82
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=82.70 E-value=2.6 Score=28.59 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|+++++++..+.+..++. ++|+||+..
T Consensus 19 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iiig~ 53 (138)
T 5nul_A 19 IAKGIIESGKDVNTINVSDVNIDELL--NEDILILGC 53 (138)
T ss_dssp HHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEEEE
T ss_pred HHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEEEc
Confidence 56677888999999987666666666 788777753
No 83
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=82.45 E-value=1.6 Score=35.53 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=40.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCC----------------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-C
Q 029484 2 TFLKYMGELGYHFEVYRNDEL----------------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G 58 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~----------------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~ 58 (192)
.|++||.+.|++|.+-..... +.+++ ..++|.+|..||.| .++...+.+ .
T Consensus 58 ~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~lGGDG------T~L~aa~~~~~ 130 (365)
T 3pfn_A 58 ELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICLGGDG------TLLYASSLFQG 130 (365)
T ss_dssp HHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEESSTT------HHHHHHHHCSS
T ss_pred HHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEEcChH------HHHHHHHHhcc
Confidence 368899999988876431000 00111 12689999999965 455555554 4
Q ss_pred CCCCEEeeeHhH
Q 029484 59 PTVPLFGVCMGL 70 (192)
Q Consensus 59 ~~~PilGIC~G~ 70 (192)
..+|||||-+|.
T Consensus 131 ~~~PvlGiN~G~ 142 (365)
T 3pfn_A 131 SVPPVMAFHLGS 142 (365)
T ss_dssp SCCCEEEEESSS
T ss_pred CCCCEEEEcCCC
Confidence 579999999873
No 84
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=80.12 E-value=3 Score=30.03 Aligned_cols=45 Identities=11% Similarity=0.044 Sum_probs=28.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----h----ccCCCeEEECCCCCCCCCc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----K----RKNPRGVLISPGPGAPQDS 47 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~----~~~~dglii~GG~~~~~~~ 47 (192)
|.++|++.|+++.....-..+.+.+ . ..++|.||.+||-|-..++
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D 97 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTD 97 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTC
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCC
Confidence 6788999999886553211223322 1 1368999999996654443
No 85
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=76.16 E-value=4.7 Score=29.22 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=26.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cC--CCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KN--PRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~--~dglii~GG~~~~ 44 (192)
|..++++.|+++.....-..+.+++. . .+ +|.||.+||-+-.
T Consensus 45 L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g 94 (178)
T 2pjk_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYS 94 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSS
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 67889999998865432112233331 1 13 8999999996643
No 86
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=76.11 E-value=2.8 Score=32.21 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHhCCCeEEEEeCC----CC--CHHHHhccCCCeEEECCCCCCCCC-----------cchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRND----EL--TVEELKRKNPRGVLISPGPGAPQD-----------SGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~----~~--~~~~~~~~~~dglii~GG~~~~~~-----------~~~~~~~~~~-~~~~~Pil 64 (192)
|.++|+..|+++++++.. .. ..+++. +||.||+.+-+..... .....+.+++ +..|..++
T Consensus 45 l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGgll 122 (256)
T 2gk3_A 45 LLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLL 122 (256)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCEEE
Confidence 678899999999998421 22 234555 8999999975432111 0223455554 45689999
Q ss_pred eee
Q 029484 65 GVC 67 (192)
Q Consensus 65 GIC 67 (192)
+|.
T Consensus 123 ~ig 125 (256)
T 2gk3_A 123 MIG 125 (256)
T ss_dssp EEC
T ss_pred EEC
Confidence 994
No 87
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=74.98 E-value=6.3 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHHh-CCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC
Q 029484 3 FLKYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~ 44 (192)
+++.+++ .|++++++...+.+.+++. ++|+||+. .|-..
T Consensus 25 i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~g-sP~y~ 64 (188)
T 2ark_A 25 VAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAVG-SPTNM 64 (188)
T ss_dssp HHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEEE-EECBT
T ss_pred HHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEEE-eCccC
Confidence 4566677 8999999988766667776 67887775 44443
No 88
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=74.63 E-value=5.3 Score=28.67 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hcc----CCCeEEECCCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRK----NPRGVLISPGPGAPQ 45 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~----~~dglii~GG~~~~~ 45 (192)
|.+.|++.|+++.....-..+.+.+ ... ++|.||.+||-|-..
T Consensus 33 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 33 LRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 6788999999876443211223332 111 389999999966543
No 89
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=72.71 E-value=8.1 Score=30.66 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=38.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHH----HhccCCCeEEECCCCCCCCCcchhHHHHHHh---CCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL---GPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~----~~~~~~dglii~GG~~~~~~~~~~~~~~~~~---~~~~PilGIC~G 69 (192)
+.++|++.|+++.+....... ..+ .....+|.||+.||.|. +.+.+..+ ..++|+.+|=+|
T Consensus 47 i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGT------v~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 47 ALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGT------LNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHH------HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchH------HHHHHHHHHhCCCCCcEEEecCC
Confidence 567889999999888643211 112 22236899999999653 33333333 467888877665
No 90
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=70.48 E-value=13 Score=26.64 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCC-------------------CCHHHHhccCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-------------------~~~~~~~~~~~dglii~GG~~~~ 44 (192)
+.+.+++.|++++++...+ ...+++. ++|+||+. .|-..
T Consensus 26 i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~g-sP~y~ 83 (200)
T 2a5l_A 26 IARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLALG-SPTRF 83 (200)
T ss_dssp HHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEEE-EECBT
T ss_pred HHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEEE-cChhc
Confidence 4566777899999887654 1234444 78888875 34433
No 91
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=70.09 E-value=0.69 Score=24.81 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=13.3
Q ss_pred CEEeeeHhHHHHHHHhC
Q 029484 62 PLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 62 PilGIC~G~Q~l~~~~g 78 (192)
-..|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 36788999999986644
No 92
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=69.23 E-value=6.5 Score=28.06 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc--c--CCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR--K--NPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~--~--~~dglii~GG~~~~ 44 (192)
|.++|++.|+++.....-..+.+.+ .. . ++|.||.+||-|-.
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSS
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 6788999999876443211223332 11 1 68999999996654
No 93
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=68.25 E-value=7.7 Score=27.61 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHH----HHhCCCeEEEEeCCCCCHHHH----hc--c-CCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKY----MGELGYHFEVYRNDELTVEEL----KR--K-NPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~----l~~~g~~~~v~~~~~~~~~~~----~~--~-~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|.++ +++.|+++.....-..+.+.+ .. . ++|.||.+||-|-..++- ..+.+.+
T Consensus 30 l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~~D~-t~ea~~~ 93 (167)
T 2g2c_A 30 LQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIRAKNQ-TPEATAS 93 (167)
T ss_dssp HHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCC-HHHHHHT
T ss_pred HHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcC-hHHHHHH
Confidence 4566 889999875432211223332 21 1 489999999966443332 3344443
No 94
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=67.91 E-value=6.4 Score=28.07 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=30.0
Q ss_pred HHHHHHhCCCeEEEEe--CCCCCHH-HHhc---cCCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYR--NDELTVE-ELKR---KNPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~--~~~~~~~-~~~~---~~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|..++++.|+++.... .|+.... .+.. .++|.||.+||-+-. +.+...+.+.+
T Consensus 32 l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG~s~g-~~D~t~eal~~ 90 (164)
T 3pzy_A 32 ITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGTGIA-PTDSTPDQTVA 90 (164)
T ss_dssp HHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESCCSSS-TTCCHHHHHHT
T ss_pred HHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCCCCCC-CCccHHHHHHH
Confidence 6788999999875332 2331111 1221 268999999995543 33333344444
No 95
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=66.31 E-value=8.2 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc---cCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR---KNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~---~~~dglii~GG~~~~ 44 (192)
|..++++.|+++.....-..+.+.+ .. .++|.||.+||-+-.
T Consensus 54 L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g 102 (185)
T 3rfq_A 54 VTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVT 102 (185)
T ss_dssp HHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 6788999999886543211223332 21 268999999996543
No 96
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=65.64 E-value=35 Score=25.56 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+....... .+.+...++||||+.+.... ...++.+.+ .++|++.+
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~~~~~l~~--~~iPvV~~ 93 (287)
T 3bbl_A 30 MVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN----DPRVQFLLK--QKFPFVAF 93 (287)
T ss_dssp HHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT----CHHHHHHHH--TTCCEEEE
T ss_pred HHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC----cHHHHHHHh--cCCCEEEE
Confidence 456778899999887542211 12233348999999874322 123333322 45666554
No 97
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=64.93 E-value=13 Score=29.43 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHH----HhccCCCeEEECCCCCCCCCcchhHHHHHHh-----CCCCCEEeeeHhHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEE----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~----~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-----~~~~PilGIC~G~Q~ 72 (192)
+.++|++.|.++.+....... ..+ .....+|.||+.||.|. +.+.+..+ ..++|+..|=.|--=
T Consensus 49 i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGT------l~~v~~~l~~~~~~~~~plgiiP~Gt~N 122 (332)
T 2bon_A 49 AIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGT------INEVSTALIQCEGDDIPALGILPLGTAN 122 (332)
T ss_dssp HHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHH------HHHHHHHHHHCCSSCCCEEEEEECSSSC
T ss_pred HHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchH------HHHHHHHHhhcccCCCCeEEEecCcCHH
Confidence 567889999999887643121 112 22237899999999653 33333322 567887777444332
Q ss_pred -HHHHhC
Q 029484 73 -IGEAFG 78 (192)
Q Consensus 73 -l~~~~g 78 (192)
++..+|
T Consensus 123 ~fa~~l~ 129 (332)
T 2bon_A 123 DFATSVG 129 (332)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 555444
No 98
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=64.03 E-value=30 Score=26.24 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+.........+ +....+||||+.+..... ...++.+. + ++|++-+.
T Consensus 37 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~~~~~~l~--~-~iPvV~i~ 101 (303)
T 3kke_A 37 VQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD---DDMLAAVL--E-GVPAVTIN 101 (303)
T ss_dssp HHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC---HHHHHHHH--T-TSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc---HHHHHHHh--C-CCCEEEEC
Confidence 456778899999998764333221 233489999998753321 11333332 3 78876654
No 99
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=63.87 E-value=6.6 Score=26.01 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=36.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++............+....+|.+|+-- .+... ..+++.+++.....|++.+..
T Consensus 20 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 20 VKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp HHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 5677888899887554311112223334788888753 12111 234566666666899998864
No 100
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=63.20 E-value=9.9 Score=29.32 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~G 39 (192)
|.++|++.|++|++++..+.+ .+++. +||.||+..
T Consensus 22 l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d 58 (259)
T 3rht_A 22 LAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSD 58 (259)
T ss_dssp HHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEES
T ss_pred HHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcC
Confidence 567899999999999876553 35555 899999974
No 101
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=62.28 E-value=13 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~ 43 (192)
|...+++.|+++.....-..+.+.+. . .++|.||.+||.+-
T Consensus 209 L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~ 255 (411)
T 1g8l_A 209 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSV 255 (411)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCS
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCC
Confidence 67889999998865432112233332 1 16899999999554
No 102
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=62.24 E-value=6.7 Score=27.84 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=30.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc--c--CCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR--K--NPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~--~--~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|.++|++.|+++.....-..+.+.+ .. . ++|.||.+||-|-.. .+-..+.+.+
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~-~D~t~ea~~~ 86 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAP-RDRTPEATRE 86 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST-TCCHHHHHHT
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC-CCChHHHHHH
Confidence 6788999999875442211223332 21 1 589999999966443 3333344443
No 103
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=61.39 E-value=24 Score=26.58 Aligned_cols=59 Identities=12% Similarity=-0.002 Sum_probs=33.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH--HH-------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTV--EE-------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~--~~-------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+........ .+ +...++||||+.+.... ...++.+.+ .++|++-+.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~~~~~l~~--~~iPvV~~~ 97 (290)
T 2rgy_A 30 TDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DEDLDELHR--MHPKMVFLN 97 (290)
T ss_dssp HHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HHHHHHHHH--HCSSEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HHHHHHHhh--cCCCEEEEc
Confidence 4567788999998876432221 11 22348999999875322 223333322 457766553
No 104
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=61.31 E-value=3.5 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=24.7
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
++|.+|..||.| .+++..+.+..++|+|||=.|.
T Consensus 41 ~~D~vv~~GGDG------Tll~~a~~~~~~~PilGIn~G~ 74 (258)
T 1yt5_A 41 TADLIVVVGGDG------TVLKAAKKAADGTPMVGFKAGR 74 (258)
T ss_dssp CCSEEEEEECHH------HHHHHHTTBCTTCEEEEEESSS
T ss_pred CCCEEEEEeCcH------HHHHHHHHhCCCCCEEEEECCC
Confidence 789999999954 3445555442289999998773
No 105
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=61.29 E-value=5.8 Score=26.49 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=22.4
Q ss_pred CCCeEEECCCCCCCCCcchhHH-HH-HHhCCCCCEEeee
Q 029484 31 NPRGVLISPGPGAPQDSGISLQ-TV-LELGPTVPLFGVC 67 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~-~~-~~~~~~~PilGIC 67 (192)
..|++|+.-|.-+.. ..|.+ +| .+.+.++|++||=
T Consensus 38 ~~~~vIvL~G~~t~~--s~wv~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 38 DADAVIVLAGLWGTR--RDEILGAVDLARKSSKPIITVR 74 (111)
T ss_dssp SCSEEEEEGGGTTTS--HHHHHHHHHHHTTTTCCEEEEC
T ss_pred cCCEEEEEeCCCcCC--ChHHHHHHHHHHHcCCCEEEEE
Confidence 678888887754432 23432 23 3467899999984
No 106
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=61.15 E-value=22 Score=22.81 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=36.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcc-CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++............+... .+|.+|+--.-....+...+.+.+++.....|++-+..
T Consensus 21 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (132)
T 2rdm_A 21 FESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISG 87 (132)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 5667888899887654211112223433 68888774321100122245566666666789887753
No 107
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=60.99 E-value=16 Score=26.11 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=13.8
Q ss_pred HHHHHHhCCCeEEEEeCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE 21 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~ 21 (192)
+.+.+++.|.+++++...+
T Consensus 24 i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 24 IGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp HHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHhCCCEEEEEehhH
Confidence 4556677799999987654
No 108
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=60.98 E-value=23 Score=22.74 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+.+............+....+|.+|+--.-. ..+.-.+.+.+++.....|++-+..
T Consensus 23 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~~t~ 87 (130)
T 3eod_A 23 LDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP-RMNGLKLLEHIRNRGDQTPVLVISA 87 (130)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 5677888999887654211112223334688887753211 1122345667776667889888764
No 109
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=60.51 E-value=41 Score=25.11 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=35.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCCCCCCCC-cchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPGPGAPQD-SGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG~~~~~~-~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+.........+ +...++||||+.+......+ ....++.+. ..++|++-+.
T Consensus 37 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~--~~~iPvV~~~ 106 (298)
T 3tb6_A 37 IESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLE--KNGIPFAMIN 106 (298)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHH--HTTCCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHH--hcCCCEEEEe
Confidence 456788899999998764222211 22348999999976433221 222333332 2456665543
No 110
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.82 E-value=33 Score=25.24 Aligned_cols=39 Identities=8% Similarity=0.155 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+...+..... .+...++||+|+.+..
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 24 LEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 45678889999999876432211 1233489999998754
No 111
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=59.79 E-value=29 Score=26.39 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||||+.+.
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 24 FVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp HHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45678889999999876422211 122348999999975
No 112
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=59.59 E-value=17 Score=27.23 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.........+ ...++||||+.+.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~-~~~~vdgiI~~~~ 66 (277)
T 3cs3_A 30 IKKGLALFDYEMIVCSGKKSHLFI-PEKMVDGAIILDW 66 (277)
T ss_dssp HHHHHHTTTCEEEEEESTTTTTCC-CTTTCSEEEEECT
T ss_pred HHHHHHHCCCeEEEEeCCCCHHHH-hhccccEEEEecC
Confidence 456678899999888753222111 1127999999875
No 113
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.53 E-value=35 Score=25.53 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||||+.+.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 30 FKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp HHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45678889999999876422211 122348999999864
No 114
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=59.38 E-value=30 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+........ +.+...++||||+.+.
T Consensus 38 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 38 IEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 4567788999998876532211 1123348999999874
No 115
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=59.35 E-value=45 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+. +.+...++||||+.+.
T Consensus 24 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 24 AKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4567788999998886532211 1223347999999864
No 116
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=58.96 E-value=40 Score=25.21 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG~~ 42 (192)
+.+.+++.|+++.+.........+ +...++||||+.+...
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 30 VESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 456788899999998764322211 2334899999987643
No 117
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.89 E-value=32 Score=25.61 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+........ ..+...++||||+.+... ...++.+ .+.++|++-+.
T Consensus 29 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~~~~~l--~~~~iPvV~i~ 92 (276)
T 3jy6_A 29 ISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-----PQTVQEI--LHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-----HHHHHHH--HTTSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-----HHHHHHH--HHCCCCEEEEe
Confidence 4567788999999987643221 122334899999997543 2222222 23567766553
No 118
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=58.68 E-value=15 Score=27.73 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=33.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HH----HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~----~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+....... .. .+...++||||+.+.... ...++.+. .++|++-+.
T Consensus 33 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~~~~~~~---~~iPvV~i~ 95 (289)
T 3k9c_A 33 IYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFD----TDELGALA---DRVPALVVA 95 (289)
T ss_dssp HHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCC----HHHHHHHH---TTSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCC----HHHHHHHH---cCCCEEEEc
Confidence 456788899999888653221 11 223347999999975332 12323222 267776554
No 119
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=58.24 E-value=22 Score=28.63 Aligned_cols=63 Identities=10% Similarity=-0.026 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH----HHhccCCCeEEECCCCCCCCCcchhHHHHHH---h-C-CCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLE---L-G-PTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~----~~~~~~~dglii~GG~~~~~~~~~~~~~~~~---~-~-~~~PilGIC 67 (192)
+++.+++.|++++++...+.+.. ++. ++|+||+....-.......+...+.. . . .++|+.-+|
T Consensus 277 i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 277 LLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 45566778999999987655544 333 78988886432222233333222222 2 2 467766555
No 120
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=58.01 E-value=28 Score=26.09 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+......+.. .+...++||||+.+.... ...++.+. .++|++.+.
T Consensus 30 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~~l~---~~iPvV~~~ 93 (285)
T 3c3k_A 30 IEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE----LPELQNII---GAFPWVQCA 93 (285)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG----HHHHHHHH---TTSSEEEES
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC----hHHHHHHh---cCCCEEEEc
Confidence 45677889999988875322111 123347999999864221 12233332 567876653
No 121
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=57.12 E-value=20 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=26.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
.++++|++.|+++..+...+.....+...++|.++..-
T Consensus 36 ~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~ 73 (317)
T 4eg0_A 36 LVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNAL 73 (317)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECC
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcC
Confidence 36788999999999997544334455445788777643
No 122
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=55.45 E-value=42 Score=25.25 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=24.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.++.....+.+ .+...++||||+.+.
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 26 FEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp HHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 45677888999998532223322 123348999999875
No 123
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=55.14 E-value=27 Score=24.67 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHHHhC-----CCeEEEEeCCCCCHHHH----hc----cCCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGEL-----GYHFEVYRNDELTVEEL----KR----KNPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~-----g~~~~v~~~~~~~~~~~----~~----~~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
+.+.+++. |+++.....-..+.+++ .. .++|.||.+||-|-.. .+-..+.+.+
T Consensus 30 l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~-~D~t~~a~~~ 95 (167)
T 1uuy_A 30 AVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTP-RDVTPEATKK 95 (167)
T ss_dssp HHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST-TCCHHHHHHH
T ss_pred HHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-CCchHHHHHH
Confidence 45677777 88775442211223332 22 2689999999965443 3333344443
No 124
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=55.07 E-value=23 Score=23.67 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.+.|+..|+++............+....+|.||+--.-. ..+...+++.++......|++-+...
T Consensus 23 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 23 LKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMP-EMGGEVFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp HHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCS-SSCHHHHHHHHHHHCTTSEEEEEECG
T ss_pred HHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCcEEEEecC
Confidence 5667888899877554211112223334688887743211 11222456666666678999888654
No 125
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=54.35 E-value=35 Score=25.75 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CH-------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TV-------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~-------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...... +. +.+...++||||+.+.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 25 AKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp HHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred HHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677888999998875311 21 2233348999999864
No 126
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=53.99 E-value=17 Score=23.73 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=34.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCC-CCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~-~~PilGIC~ 68 (192)
+.+.|+..|+++............+....+|.+| .++ .+...+++.+++. . ..|++.+..
T Consensus 34 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~~ii~ls~ 94 (137)
T 2pln_A 34 IEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSIVVLVSSD 94 (137)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTSEEEEEES
T ss_pred HHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCccEEEEeC
Confidence 5677888899877554211112223334788888 221 1112455666655 6 789988764
No 127
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=53.90 E-value=40 Score=26.42 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=15.0
Q ss_pred HHHHHHhCCCeEEEEeCC
Q 029484 3 FLKYMGELGYHFEVYRND 20 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~ 20 (192)
++++|.+.|++|.+....
T Consensus 20 ~A~~L~~~G~~V~~~D~~ 37 (326)
T 3eag_A 20 LAAIAKEAGFEVSGCDAK 37 (326)
T ss_dssp HHHHHHHTTCEEEEEESS
T ss_pred HHHHHHhCCCEEEEEcCC
Confidence 788899999999988753
No 128
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=53.65 E-value=31 Score=25.77 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=25.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+.. .+...++||||+.+.
T Consensus 27 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 27 QIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45678889999999876422211 122348999999865
No 129
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=53.62 E-value=20 Score=28.77 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=25.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG 40 (192)
+++.+++.|++++++...+.+..++.. .++|+||+.-.
T Consensus 277 i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP 316 (404)
T 2ohh_A 277 IAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAP 316 (404)
T ss_dssp HHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECc
Confidence 456667789999999876665553211 27898888643
No 130
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=53.19 E-value=17 Score=23.62 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCC---C-CCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---A-PQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~---~-~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++............+....+|.+|+--... . ..+...+++.+++.....|++.+..
T Consensus 19 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 19 VQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEEC
Confidence 5667888899887654311112223334688777753211 0 1122245666666667899998864
No 131
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=53.04 E-value=27 Score=26.25 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHH-------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~-------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+...... +.+ .+...++||||+.+.... .....++.+ . .++|++-+
T Consensus 27 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~--~~~~~~~~~--~-~~iPvV~~ 93 (304)
T 3o1i_D 27 MVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH--AYEHNLKSW--V-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT--SSTTTHHHH--T-TTSCEEEC
T ss_pred HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--HHHHHHHHH--c-CCCCEEEe
Confidence 45677888999999986531 211 123348999999965332 112223332 2 67888776
No 132
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=52.69 E-value=13 Score=30.56 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=28.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCCCCCcchhHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVL 55 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~~~~~~~~~~~~~ 55 (192)
|...+++.|+++.....-..+.+.+. . .++|.||.+||.+- .+.+...+.+.
T Consensus 212 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~-g~~D~t~~al~ 269 (402)
T 1uz5_A 212 LCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASG-GTKDLTASVIE 269 (402)
T ss_dssp HHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCC-CCcccHHHHHH
Confidence 67788999998865432112233322 1 15899999999554 33333333443
No 133
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=52.43 E-value=71 Score=23.93 Aligned_cols=40 Identities=5% Similarity=0.113 Sum_probs=26.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HH----HHhccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VE----ELKRKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~----~~~~~~~dglii~GG~~ 42 (192)
+.+.+++.|+++.+...++.. .. .+....+||||+.+...
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 32 IGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp HHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred HHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 456778899999988754211 11 12234899999997543
No 134
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=52.03 E-value=7.7 Score=31.82 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=24.9
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhC-CCC-CEEeeeHh
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELG-PTV-PLFGVCMG 69 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~-~~~-PilGIC~G 69 (192)
++|.+|..||.| .++...+.+. .++ |||||-.|
T Consensus 114 ~~DlVIvlGGDG------TlL~aa~~~~~~~vpPiLGIN~G 148 (388)
T 3afo_A 114 RTDLLVTLGGDG------TILHGVSMFGNTQVPPVLAFALG 148 (388)
T ss_dssp HCSEEEEEESHH------HHHHHHHTTTTSCCCCEEEEECS
T ss_pred CCCEEEEEeCcH------HHHHHHHHhcccCCCeEEEEECC
Confidence 689999999954 4556666553 567 89999887
No 135
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=51.89 E-value=27 Score=21.52 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=35.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC--CCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~--~~~PilGIC 67 (192)
+.+.++..|+++............+....+|.+++--... ..+...+.+.+++.. ...|++.+.
T Consensus 17 l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 17 VCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred HHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhccccCCCCEEEEe
Confidence 5677888899877654211112223334788888753211 112223456666543 678887665
No 136
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=51.80 E-value=44 Score=21.35 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeEE-EEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.+.|++.|+.+. .....+.....+....+|.+|+--. .+... ..+.+.+++.....|++-+..-
T Consensus 17 l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 17 IRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecC--CCCCChHHHHHHHHhcCCCCeEEEEeCC
Confidence 5677888897776 3432222233344457898887532 12222 2456667766678898877643
No 137
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=51.56 E-value=12 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccC-CCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKN-PRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dglii~ 38 (192)
+.+.+++.|++++++...+.+..++. + +|.||+.
T Consensus 21 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~~d~ii~~ 55 (147)
T 1f4p_A 21 IARELADAGYEVDSRDAASVEAGGLF--EGFDLVLLG 55 (147)
T ss_dssp HHHHHHHHTCEEEEEEGGGCCSTTTT--TTCSEEEEE
T ss_pred HHHHHHhcCCeeEEEehhhCCHHHhc--CcCCEEEEE
Confidence 45566777999998876544434443 6 8877775
No 138
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.11 E-value=51 Score=24.50 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+.... .+.+ .+...++||||+.+.... ....+.+.+ ..++|++.+
T Consensus 29 i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~l~~-~~~iPvV~~ 93 (289)
T 1dbq_A 29 VEKNCFQKGYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSEYP----EPLLAMLEE-YRHIPMVVM 93 (289)
T ss_dssp HHHHHHHHTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSCCC----HHHHHHHHH-TTTSCEEEE
T ss_pred HHHHHHHcCCeEEEEcCC-CChHHHHHHHHHHHhCCCCEEEEEeccCC----HHHHHHHHh-ccCCCEEEE
Confidence 345677889999887653 2322 223348999999875321 122333322 246776554
No 139
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=50.90 E-value=3.2 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=32.2
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee---------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI---------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+.+...+...++||+|| |.||.-.+.
T Consensus 162 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~ 225 (555)
T 2f48_A 162 AKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATK 225 (555)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHH
T ss_pred HHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHH
Confidence 4455899999999977654444444444444456777763 888877655
No 140
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=50.88 E-value=24 Score=23.61 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH---hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~---~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++..... ..+.+ ....+|.+|+--.... .+...+++.++......|++.+..
T Consensus 19 l~~~L~~~g~~v~~~~~---~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 19 MQQTLELAGFTVSSFAS---ATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHHTTCEEEEESC---HHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHcCcEEEEECC---HHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEEEC
Confidence 56778889998775542 12222 2236887777532111 122245666666667899988864
No 141
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=50.38 E-value=23 Score=23.97 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~ 38 (192)
+.+.+++.|+++++++..+.+..++.. ++|++|+.
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~g 56 (148)
T 3f6r_A 22 LEELIAAGGHEVTLLNAADASAENLAD-GYDAVLFG 56 (148)
T ss_dssp HHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEEE
T ss_pred HHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEEE
Confidence 456677889999999886554444431 57766665
No 142
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=50.08 E-value=3.1 Score=35.25 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=33.7
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+.+...+...++|+.|| |+||.-.+.
T Consensus 185 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~ 246 (487)
T 2hig_A 185 LERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVE 246 (487)
T ss_dssp HHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHH
T ss_pred HHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHH
Confidence 4445899999999977654444444444444556778875 999987665
No 143
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=50.06 E-value=16 Score=26.27 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=14.1
Q ss_pred HHH-HHhCCCeEEEEeCCCCC
Q 029484 4 LKY-MGELGYHFEVYRNDELT 23 (192)
Q Consensus 4 ~~~-l~~~g~~~~v~~~~~~~ 23 (192)
.+. +++.|.+++++...+.+
T Consensus 26 ~~~~l~~~g~~v~~~dl~~~~ 46 (197)
T 2vzf_A 26 LAHVLARSDSQGRHIHVIDLD 46 (197)
T ss_dssp HHHHHHHSSEEEEEEEGGGSC
T ss_pred HHHHHHHCCCeEEEEEccccC
Confidence 444 66679999999875544
No 144
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.81 E-value=48 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||||+.+.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45678889999998875422211 122338999999874
No 145
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=49.31 E-value=26 Score=22.73 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=35.7
Q ss_pred HHHHHHhCCCeEEE-EeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v-~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++.. ..........+....+|.+|+--.-....+...+++.+++. ...|++-+..
T Consensus 25 l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~ 90 (140)
T 3cg0_A 25 LRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITS 90 (140)
T ss_dssp HHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEEC
T ss_pred HHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEec
Confidence 56677888998873 43211112223334788888753211011222455666655 7899988764
No 146
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=49.30 E-value=10 Score=30.75 Aligned_cols=10 Identities=10% Similarity=0.116 Sum_probs=4.8
Q ss_pred CCCeEEECCC
Q 029484 31 NPRGVLISPG 40 (192)
Q Consensus 31 ~~dglii~GG 40 (192)
++|.||-.||
T Consensus 88 ~~d~IIavGG 97 (386)
T 1rrm_A 88 GADYLIAIGG 97 (386)
T ss_dssp TCSEEEEEES
T ss_pred CcCEEEEeCC
Confidence 4455554444
No 147
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=49.28 E-value=15 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=24.7
Q ss_pred HHHHHHhCCCe--E---EEEeCCCCCH--HHHhc----cCCCeEEECCCCCCCC
Q 029484 3 FLKYMGELGYH--F---EVYRNDELTV--EELKR----KNPRGVLISPGPGAPQ 45 (192)
Q Consensus 3 l~~~l~~~g~~--~---~v~~~~~~~~--~~~~~----~~~dglii~GG~~~~~ 45 (192)
|.++|++.|++ + .+++ |+... +.+.. .++|.||.+||-|-..
T Consensus 28 L~~~L~~~G~~~~v~~~~iV~-Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~ 80 (195)
T 1di6_A 28 LEEWLTSALTTPFELETRLIP-DEQAIIEQTLCELVDEMSCHLVLTTGGTGPAR 80 (195)
T ss_dssp HHHHHHHHBCSCEEEEEEEEE-SCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred HHHHHHHcCCCCceEEEEEeC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 67788999876 2 3333 32211 12221 1589999999966543
No 148
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=48.96 E-value=23 Score=23.09 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC 67 (192)
+.+.|+..|+++............+....+|.+|+--.-. ..+...+++.+++ .....|++.+.
T Consensus 23 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~pii~~s 88 (142)
T 3cg4_A 23 VKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQGIAIVMLT 88 (142)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCS-SSCHHHHHHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCCCCEEEEE
Confidence 5677888898876554211112223334677777643211 1122245566666 45678888765
No 149
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=48.65 E-value=15 Score=30.36 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----c--cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~--~~~dglii~GG~~~ 43 (192)
|...+++.|+++.....-..+.+.+. . .++|.||.+||.+-
T Consensus 213 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~ 259 (419)
T 2fts_A 213 LLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSM 259 (419)
T ss_dssp HHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred HHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 67889999998765432112233322 1 15899999998553
No 150
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=48.64 E-value=21 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHHHhc--cCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEELKR--KNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~~~~--~~~dglii~ 38 (192)
+++.+++.|++++++...+. +..++.. .++|+||+.
T Consensus 25 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 25 IINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp HHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEE
Confidence 56677888999999988665 5555432 267877764
No 151
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=48.35 E-value=40 Score=21.95 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=34.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc-cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|+..|+++............+.. ..+|.||+--.-....+.-.+.+.+++. ...|++-+.
T Consensus 21 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls 85 (140)
T 3h5i_A 21 IANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLT 85 (140)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEE
T ss_pred HHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEE
Confidence 567788899988765432111222333 4688777743210001222345555554 577877665
No 152
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=48.32 E-value=51 Score=24.55 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+...+..... .+...++||||+.+..
T Consensus 35 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 35 ISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp HHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 45678889999988765422111 1223489999998753
No 153
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=48.31 E-value=33 Score=28.75 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH-HHHh--------------ccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV-EELK--------------RKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~-~~~~--------------~~~~dglii~GG~ 41 (192)
++++|.+.|++|.+......+. +.+. ..++|.||+++|-
T Consensus 38 ~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 38 IAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred HHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 7889999999998886432111 1111 0157889998874
No 154
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=48.12 E-value=61 Score=24.34 Aligned_cols=39 Identities=8% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+........ +.+...++||||+.+..
T Consensus 34 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 34 ISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp HHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred HHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 4567788999998876532211 11233489999998753
No 155
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=47.60 E-value=23 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~ 38 (192)
+++.+++.|++++++...+.+..++.. .++|+||+.
T Consensus 21 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~G 58 (161)
T 3hly_A 21 IGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLG 58 (161)
T ss_dssp HHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEE
Confidence 566778889999999887666665532 268877764
No 156
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=47.54 E-value=66 Score=23.86 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=33.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+.... .+.+ .+...++||||+.+.... ...++.+.+ ..++|++-+.
T Consensus 43 i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~l~~-~~~iPvV~~~ 108 (296)
T 3brq_A 43 AARMAEEKGRQLLLADGK-HSAEEERQAIQYLLDLRCDAIMIYPRFLS----VDEIDDIID-AHSQPIMVLN 108 (296)
T ss_dssp HHHHHHHTTCEEEEECCT-TSHHHHHHHHHHHHHTTCSEEEEECSSSC----HHHHHHHHH-TCSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEecCCCC----hHHHHHHHh-cCCCCEEEEc
Confidence 456678899999887643 2222 223347999999875321 122333322 1578876653
No 157
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=47.53 E-value=38 Score=22.60 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=36.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhC--CCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~--~~~PilGIC 67 (192)
+.+.|+..|+++............+....+|.||+--. .+... -.+++.+++.. ..+|++-+.
T Consensus 23 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 23 LKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCCCEEEEE
Confidence 56778888998866643111122233347888887532 12222 24556666542 678999877
No 158
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=47.38 E-value=36 Score=22.86 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=37.2
Q ss_pred HHHHHHhCCCeEE-EEeCCCCCHHHHhcc--CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~-v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|++.|+++. ...........+... .+|.||+--.-. ..+.-.+++.+++.....||+-+..
T Consensus 52 l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~-~~~g~~~~~~lr~~~~~~~ii~ls~ 119 (157)
T 3hzh_A 52 LTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMP-KMDGITCLSNIMEFDKNARVIMISA 119 (157)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCS-SSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCC-CccHHHHHHHHHhhCCCCcEEEEec
Confidence 5677888999886 443211112223334 678777753211 1222345677777677899988774
No 159
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=47.36 E-value=13 Score=28.52 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=26.8
Q ss_pred HHHHHHhCCCeEEEEeCCC----C--CHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDE----L--TVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~----~--~~~~~~~~~~dglii~G 39 (192)
|.++|+..|++|+.++.++ . +.+++. +||.||+..
T Consensus 38 ~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~--~yDvIIl~d 78 (248)
T 3soz_A 38 LLSCLRQGNIDVDYMPAHIVQTRFPQTAEALA--CYDAIVISD 78 (248)
T ss_dssp HHHHHTTTTCEEEEEETTHHHHSCCCSHHHHH--TCSEEEEES
T ss_pred HHHHHhcCCceeEEeCchhhhhhCCCChHHHh--cCCEEEEcC
Confidence 6778999999999998742 1 234555 899999984
No 160
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=47.24 E-value=46 Score=25.23 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCCCCCC-cchhHHHHHHhCCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQD-SGISLQTVLELGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~~~~~-~~~~~~~~~~~~~~~PilG 65 (192)
+...|+..|++|...-.+ .+.+++ ...++|.|.+|........ ...+++.+++...++||+-
T Consensus 143 va~~L~~~G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~v 209 (258)
T 2i2x_B 143 VTALLRANGYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC 209 (258)
T ss_dssp HHHHHHHTTCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEE
Confidence 456789999999988654 455554 2348999999975332211 1234445555444566554
No 161
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=47.05 E-value=83 Score=23.77 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+.+ .+...++||||+.+.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45667888999988743222322 123348999999864
No 162
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=46.77 E-value=24 Score=22.54 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHh--CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~--~~~~PilGIC 67 (192)
+.+.|+..|+++............+....+|.||+--. .+... ..+++.+++. ....|++-+.
T Consensus 19 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii~~s 84 (127)
T 3i42_A 19 FKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKTSKFVAVS 84 (127)
T ss_dssp HHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSCCEEEEEE
T ss_pred HHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCCCCEEEEE
Confidence 56778889987766543111122333447888877532 11222 2456666665 5678888765
No 163
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.77 E-value=51 Score=24.66 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=29.7
Q ss_pred HHHHHHhCCCeEEEE-eCCCCC------HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVY-RNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~-~~~~~~------~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+. ...... .+.+...++||||+.+.... ...++.+. +.++|++-+.
T Consensus 30 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~~l~--~~~iPvV~~~ 95 (290)
T 3clk_A 30 IQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT----DDNLQLLQ--SSDVPYCFLS 95 (290)
T ss_dssp HHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC--------CHHHHH--CC--CEEEES
T ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC----HHHHHHHH--hCCCCEEEEc
Confidence 456778899999887 432111 12333448999999875322 12233332 3567876553
No 164
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.56 E-value=36 Score=22.07 Aligned_cols=67 Identities=7% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHH--hCCCCCEEeeeHhHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~--~~~~~PilGIC~G~Q 71 (192)
+.+.|++.|+++............+....+|.||+--. .+... -.+++.+++ .....|++-+.....
T Consensus 22 l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 22 LNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 56778889998766643211122334447888887432 12222 245566665 456899998875543
No 165
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=46.32 E-value=21 Score=28.90 Aligned_cols=10 Identities=20% Similarity=0.049 Sum_probs=5.6
Q ss_pred CEEeeeHhHH
Q 029484 62 PLFGVCMGLQ 71 (192)
Q Consensus 62 PilGIC~G~Q 71 (192)
-|+||+.|--
T Consensus 95 ~IIavGGGsv 104 (387)
T 3bfj_A 95 IIVTVGGGSP 104 (387)
T ss_dssp EEEEEESHHH
T ss_pred EEEEeCCcch
Confidence 3666665544
No 166
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=46.22 E-value=18 Score=22.91 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh--CCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~--~~~~PilGI 66 (192)
+.+.|+..|+++............+....+|.+++--.-....+...+.+.+++. ....|++.+
T Consensus 21 l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 21 LRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 5667888899887554311112223334788887743211011122355666654 468898887
No 167
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=46.20 E-value=31 Score=25.01 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHHh---CCCeEEEEeCCCCCHHHH----hc----cCCCeEEECCCCCCC
Q 029484 3 FLKYMGE---LGYHFEVYRNDELTVEEL----KR----KNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~---~g~~~~v~~~~~~~~~~~----~~----~~~dglii~GG~~~~ 44 (192)
|.+.|++ .|+++.....-..+.+.+ .. .++|.||.+||-|-.
T Consensus 39 L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g 91 (189)
T 1jlj_A 39 LKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFA 91 (189)
T ss_dssp HHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence 5677887 798875432211223332 21 168999999996653
No 168
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=45.83 E-value=94 Score=23.84 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+......... .+....+||||+.+.... ....+.+. ..++|+.-+
T Consensus 84 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~~~~~~l~--~~~iPvV~~ 147 (339)
T 3h5o_A 84 IETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA----EPFERILS--QHALPVVYM 147 (339)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----TTHHHHHH--HTTCCEEEE
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC----HHHHHHHh--cCCCCEEEE
Confidence 45677889999998875422211 123348999999874322 12333332 246777655
No 169
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=45.51 E-value=51 Score=25.52 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhc--cCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKR--KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~--~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC 67 (192)
+.+.+++.|+++.+......... .+.. .++||||+.+. . ......+.. .+.++|++-+.
T Consensus 26 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~-----~~~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 26 MQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-Q-----YVAPQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-S-----SHHHHHHHHHTTSCCEEEEEE
T ss_pred HHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-h-----hhHHHHHHHHHhCCCcEEEEc
Confidence 45677888999999875422211 1222 38999999852 1 112222333 34677776654
No 170
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=45.09 E-value=88 Score=23.92 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+........ +.+...++||+|+.+.
T Consensus 85 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 85 VDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4566788999998886532221 1123347999999874
No 171
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.65 E-value=54 Score=24.13 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+........ +.+...++||+|+.+.... ...++.+.+ .++|++-+
T Consensus 25 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~l~~--~~iPvV~~ 88 (275)
T 3d8u_A 25 FQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS----QRTHQLLEA--SNTPVLEI 88 (275)
T ss_dssp HHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC----HHHHHHHHH--HTCCEEEE
T ss_pred HHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHh--CCCCEEEE
Confidence 4567788999998876532211 1233348999999874321 223333322 35676654
No 172
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=44.48 E-value=36 Score=24.53 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=14.3
Q ss_pred HHHHHHhCCCeEEEEeCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE 21 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~ 21 (192)
+++.+++.|.+++++...+
T Consensus 27 i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 27 AAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp HHHHHHHTTCEEEEEECCC
T ss_pred HHHHHhcCCCEEEEEeccc
Confidence 4566777899999998654
No 173
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=44.45 E-value=19 Score=25.19 Aligned_cols=34 Identities=0% Similarity=0.105 Sum_probs=22.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~ 38 (192)
|.+.+++.|++++++...+.+..++. ++|.||+.
T Consensus 30 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~g 63 (167)
T 1ykg_A 30 LRDDLLAAKLNVKLVNAGDYKFKQIA--SEKLLIVV 63 (167)
T ss_dssp HHHHHHHHTCCCEEEEGGGCCGGGGG--GCSEEEEE
T ss_pred HHHHHHHCCCceEEeehhhCCHHHhc--cCCeEEEE
Confidence 45566667888888876554555554 67766664
No 174
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=44.33 E-value=48 Score=21.50 Aligned_cols=65 Identities=6% Similarity=-0.067 Sum_probs=37.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh--ccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|..+............+. ...+|.||+--.-. ..+.-.+++.+++.....|++-+..
T Consensus 19 l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 19 IKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMP-KLSGMDILREIKKITPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCS-SSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCeEEEEEC
Confidence 56778889988776643211122233 34788887753211 1122245666776667889887764
No 175
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=44.21 E-value=25 Score=23.17 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC~ 68 (192)
+.+.|+..|+++............+....+|.+|+--.-. ..+...+++.+++ .....||+.+..
T Consensus 24 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 24 SISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMP-KISGMDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCC-CCCHHHHHHHHHcCcccCCCCEEEEeC
Confidence 5567788888777554211112223334788888753211 1122245666665 456799988764
No 176
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=43.35 E-value=79 Score=23.46 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+..+ +...++||||+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 23 AEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345677889999887653222111 22347999999753
No 177
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=43.34 E-value=99 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH-------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE-------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~-------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.... .+.+. +...++||||+.+.
T Consensus 80 i~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 80 VEKNCFQKGYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp HHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 456678899999887653 23221 23347999999864
No 178
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=43.06 E-value=25 Score=25.15 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHHHHH---hCCCeEEEEeCCCCCHHHH----hc--c--CCCeEEECCCCCCCCC
Q 029484 3 FLKYMG---ELGYHFEVYRNDELTVEEL----KR--K--NPRGVLISPGPGAPQD 46 (192)
Q Consensus 3 l~~~l~---~~g~~~~v~~~~~~~~~~~----~~--~--~~dglii~GG~~~~~~ 46 (192)
|.++++ +.|+++..... ..+.+.+ .. . ++|.||.+||-|-..+
T Consensus 30 l~~~l~~l~~~G~~v~~~iv-~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~~ 83 (178)
T 2pbq_A 30 IIDYLKDVIITPFEVEYRVI-PDERDLIEKTLIELADEKGCSLILTTGGTGPAPR 83 (178)
T ss_dssp HHHHHHHHBCSCCEEEEEEE-CSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT
T ss_pred HHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 566677 89998733222 1223332 21 1 6899999999665433
No 179
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=42.73 E-value=81 Score=23.57 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=33.5
Q ss_pred HHHHHHhCCC-eEEEEeCCCCCH------HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGY-HFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~~------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|. ++.+........ +.+...++||||+.+.... .....++.+ .+.++|++-+.
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~--~~~~~~~~~--~~~~iPvV~~~ 91 (309)
T 2fvy_A 24 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA--AAGTVIEKA--RGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGG--GHHHHHHHH--HTTTCCEEEES
T ss_pred HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc--hhHHHHHHH--HHCCCcEEEec
Confidence 4567788898 888876532111 1223347999999864221 011122222 24678877654
No 180
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=42.60 E-value=22 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=14.1
Q ss_pred HHHHHHh-CCCeEEEEeCCC
Q 029484 3 FLKYMGE-LGYHFEVYRNDE 21 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~ 21 (192)
+++.+++ .|++++++...+
T Consensus 22 i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 22 VAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp HHHHHHTSTTCEEEEEECCC
T ss_pred HHHHHhhcCCCEEEEEEccc
Confidence 4556677 899999998753
No 181
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=42.22 E-value=21 Score=29.21 Aligned_cols=41 Identities=15% Similarity=-0.012 Sum_probs=23.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~ 43 (192)
|...+++.|+++.....-..+.+.+.. .++|.||.+||.+-
T Consensus 216 L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~ 262 (396)
T 1wu2_A 216 LQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAF 262 (396)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC-----
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 678899999988654321222333321 16899999998664
No 182
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=42.09 E-value=42 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....+.. .+.+...++||||+.+.
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 24 ADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp HHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456778889999888653211 11122347999999874
No 183
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.68 E-value=54 Score=24.74 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+......... .+...++||||+.+..
T Consensus 49 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 49 INQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp HHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 45677888999988765322111 1233489999998753
No 184
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.35 E-value=60 Score=25.24 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.... .+.+ .+....+||||+.+.
T Consensus 88 i~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 88 IQSTASKAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp HHHHHHHTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred HHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 456678899999888653 2222 122347999999874
No 185
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=41.24 E-value=32 Score=23.63 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHHHHhCCCeEEEEeCC-C-------CCHHH-HhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeeeHhHHH
Q 029484 4 LKYMGELGYHFEVYRND-E-------LTVEE-LKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~-~-------~~~~~-~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Q~ 72 (192)
.++|++.|+.++.+.-- + ....+ +...++|.||-+..++. ....--..+++ +..++|++=-=-+...
T Consensus 60 a~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~--~~~~d~~~iRR~Av~~~IP~~T~~~tA~a 137 (143)
T 2yvq_A 60 SDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNT--KFVHDNYVIRRTAVDSGIPLLTNFQVTKL 137 (143)
T ss_dssp HHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCG--GGHHHHHHHHHHHHHTTCCEECSHHHHHH
T ss_pred HHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCC--cCCccHHHHHHHHHHhCCCeEcCHHHHHH
Confidence 46788899988888531 1 12222 45568999999986531 11111223333 5678998866666666
Q ss_pred HHHH
Q 029484 73 IGEA 76 (192)
Q Consensus 73 l~~~ 76 (192)
+.++
T Consensus 138 ~~~a 141 (143)
T 2yvq_A 138 FAEA 141 (143)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
No 186
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=41.03 E-value=66 Score=20.29 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHh--CCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~--~~~~PilGIC~ 68 (192)
+.+.++..|+++..........+.+....+|.+++-= ..+...+ .+.+.+++. ..+.|++-+..
T Consensus 18 l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~--~~p~~~g~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 18 VSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXI--MMPVMDGFTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECS--CCSSSCHHHHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEec--cCCCCcHHHHHHHHHhcccccCCCEEEEec
Confidence 4567888999887554211112233444788777742 2232233 455666543 35789887763
No 187
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=40.94 E-value=51 Score=24.37 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHH-HHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQ-TVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~-~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+......... .+....+||||+.+. ....++ .+. ..++|++-+
T Consensus 30 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~------~~~~~~~~l~--~~~iPvV~~ 92 (277)
T 3e61_A 30 VEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF------NENIIENTLT--DHHIPFVFI 92 (277)
T ss_dssp HHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG------GHHHHHHHHH--HC-CCEEEG
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC------ChHHHHHHHH--cCCCCEEEE
Confidence 45677889999999876432211 122348999999871 122233 332 357887765
No 188
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=40.86 E-value=45 Score=21.52 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=36.5
Q ss_pred HHHHHHh-CCCe-EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeeeH
Q 029484 3 FLKYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~-~g~~-~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC~ 68 (192)
+.+.|+. .|++ +............+....+|.+|+--.-. ..+...+.+.+++ .....|++.+..
T Consensus 24 l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 24 LTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMV-GMDGFSICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCT-TSCHHHHHHHHHTSTTTTTSEEEEEES
T ss_pred HHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccC-CCcHHHHHHHHHhCccccCCcEEEEeC
Confidence 5667888 8998 65554311112223334788888753321 1122245566665 456789988763
No 189
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=40.80 E-value=39 Score=22.44 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++............+....+|.||+--.-. ..+.-.+++.++......|++-+..
T Consensus 30 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 30 LQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLP-QMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp HHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCC-cCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 5677888898877654311112223344788887743211 1122245666766667889887764
No 190
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=40.67 E-value=38 Score=21.87 Aligned_cols=65 Identities=6% Similarity=-0.105 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|..+............+....+|.||+--.-. ..+.-.+++.+++.....|++.+..
T Consensus 23 l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 23 LSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMP-KLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp HHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCcEEEEec
Confidence 5667788888777665321112223334788877753311 1122245666776667788887764
No 191
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=40.36 E-value=25 Score=22.93 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=23.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+++++.|+++++..+...+..+.. .++|.+++++
T Consensus 23 ~~~~~~~~gi~~~i~a~~~~~~~~~~-~~~Dvil~~p 58 (106)
T 1e2b_A 23 MRAQAEKYEVPVIIEAFPETLAGEKG-QNADVVLLGP 58 (106)
T ss_dssp HHHHHHHSCCSEEEEEECSSSTTHHH-HHCSEEEECT
T ss_pred HHHHHHHCCCCeEEEEecHHHHHhhc-cCCCEEEEcc
Confidence 56788999998888776534333322 2688666654
No 192
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=40.23 E-value=17 Score=29.49 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=8.9
Q ss_pred CCCeEEECCCCCCCCCcc
Q 029484 31 NPRGVLISPGPGAPQDSG 48 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~ 48 (192)
++|.||-.|| |++.|..
T Consensus 88 ~~D~IIavGG-Gsv~D~a 104 (383)
T 3ox4_A 88 NSDFVISLGG-GSPHDCA 104 (383)
T ss_dssp TCSEEEEEES-HHHHHHH
T ss_pred CcCEEEEeCC-cHHHHHH
Confidence 5666666665 4443333
No 193
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=39.83 E-value=56 Score=24.32 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG~~ 42 (192)
+.+.+++.|+++.+.... .+.+ .+...++||||+.+...
T Consensus 29 i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 74 (288)
T 2qu7_A 29 ISHECQKHHLHVAVASSE-ENEDKQQDLIETFVSQNVSAIILVPVKS 74 (288)
T ss_dssp HHHHHGGGTCEEEEEECT-TCHHHHHHHHHHHHHTTEEEEEECCSSS
T ss_pred HHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHcCccEEEEecCCC
Confidence 456677889999888653 2221 12234799999987643
No 194
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.29 E-value=74 Score=23.75 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+........ +.+...++||||+.+.
T Consensus 42 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 42 LERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567788999998876532211 1123347999999875
No 195
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=38.68 E-value=1.1e+02 Score=22.31 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHhccC-CCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVE-------ELKRKN-PRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~-~dglii~GG 40 (192)
+.+.+++.|+++.+...+ ..+.+ .+...+ +||||+.+.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 22 AQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp HHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred HHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 456778889999988642 22222 222336 999999874
No 196
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=38.66 E-value=99 Score=23.21 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=24.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||||+.+.
T Consensus 24 i~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 24 AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44667788999988865322211 122348999999864
No 197
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=38.59 E-value=44 Score=24.92 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEEEeCC--CCCH----HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRND--ELTV----EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~--~~~~----~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+.... .... +.+...++||||+.+... . ..........++|++-+.
T Consensus 34 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~-~~~~~~~~~~~iPvV~~~ 98 (289)
T 3g85_A 34 LQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN-----Y-DLEYLNKASLTLPIILFN 98 (289)
T ss_dssp HHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH-----H-HHHHHHHCCCSSCEEEES
T ss_pred HHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc-----c-cHHHHHhccCCCCEEEEC
Confidence 456778889988776432 1111 122333799999987421 1 112222345678887653
No 198
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=38.55 E-value=71 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEeCC-CCCHH-------HHhccCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~~~~-------~~~~~~~dglii~GG~ 41 (192)
+.+.+++.|+++.+...+ ..+.+ .+...++||||+.+..
T Consensus 29 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 29 AQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp HHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 456677889999887642 12221 1233489999998753
No 199
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=38.43 E-value=77 Score=24.47 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=40.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHHHh---ccCCCeEEECCCCCCCCCcchhHHHHHHh---CCCCCEEeeeHhHH-HHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEELK---RKNPRGVLISPGPGAPQDSGISLQTVLEL---GPTVPLFGVCMGLQ-CIG 74 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~~~---~~~~dglii~GG~~~~~~~~~~~~~~~~~---~~~~PilGIC~G~Q-~l~ 74 (192)
+.++|++.|.++++....... ..++. ..++|.||+.||.|.. .+.+..+ ..+.|+..|=.|-- -++
T Consensus 31 i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl------~~v~~~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 31 IVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTV------FECTNGLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp HHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHH------HHHHHHHTTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHH------HHHHHHHhhCCCCCcEEEecCCcHHHHH
Confidence 567788999999888643222 11221 1278999999996632 2223322 25667666655543 445
Q ss_pred HHhC
Q 029484 75 EAFG 78 (192)
Q Consensus 75 ~~~g 78 (192)
..+|
T Consensus 105 r~lg 108 (304)
T 3s40_A 105 RTLG 108 (304)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 5444
No 200
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=38.34 E-value=66 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHH----HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEE----LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~----~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....... ..+ +...++||||+.+.
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 32 ITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp HHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred HHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 456678889999888643211 111 22248999999864
No 201
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.21 E-value=98 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=25.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.........+ +...++||||+.+.
T Consensus 85 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 85 AARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp HHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 456778899999988754222211 22348999999875
No 202
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=37.92 E-value=56 Score=24.67 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----------HHHHhc--cCCCeEEECCCCCCCCCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----------VEELKR--KNPRGVLISPGPGAPQDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----------~~~~~~--~~~dglii~GG~~~~~~~~~~~~ 52 (192)
+++.+++.|++++++...+.+ ..++.. ...|+||+. .|-.-......++
T Consensus 57 ~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~-sP~Yn~sipa~LK 118 (247)
T 2q62_A 57 ARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV-SPERHGAMTGIMK 118 (247)
T ss_dssp HHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE-EECSSSSCCHHHH
T ss_pred HHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE-eCCCCCCccHHHH
Confidence 345567789999999876554 222221 167888886 3343333333333
No 203
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=37.29 E-value=71 Score=23.46 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=30.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCC------HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~------~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC 67 (192)
+.+.+++.|+++.+....... .+.+...++||+|+.+..... .. +.. ...++|++-+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~----~~---~~~~~~~~iPvV~~~ 85 (276)
T 2h0a_A 21 IEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE----RF---EEGRLPTERPVVLVD 85 (276)
T ss_dssp HHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------------CCSCSSCEEEES
T ss_pred HHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH----HH---HHHHhhcCCCEEEEe
Confidence 456678889998887542111 122333479999998753321 11 222 23578877654
No 204
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=37.16 E-value=67 Score=24.26 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEEC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 38 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~ 38 (192)
+++.+++.|+++.++..++.+...+...++|.++..
T Consensus 26 l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 26 VLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp HHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred HHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 678899999999999875444344433467877654
No 205
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=37.15 E-value=4.8 Score=33.42 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=32.9
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++......+.+...+...++|++|| |.||.-.+.
T Consensus 100 l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 100 FKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp HHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 4445899999999976654333333333333456889988 999988665
No 206
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=36.95 E-value=96 Score=24.03 Aligned_cols=58 Identities=10% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+...+.....+ +....+||+|+.+.... ...++.+. ..++|+.-+
T Consensus 92 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~----~~~~~~l~--~~~iPvV~i 155 (355)
T 3e3m_A 92 LTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT----EQTIRLLQ--RASIPIVEI 155 (355)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC----HHHHHHHH--HCCSCEEEE
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC----HHHHHHHH--hCCCCEEEE
Confidence 456778899999988754222111 22348999999864321 12223222 356777655
No 207
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=36.69 E-value=75 Score=26.77 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHHhc---------------cCCCeEEECCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEELKR---------------KNPRGVLISPGP 41 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~~~---------------~~~dglii~GG~ 41 (192)
++++|.+.|++|.+......+ .+.+.. .++|.||+++|-
T Consensus 35 lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi 90 (524)
T 3hn7_A 35 LALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAM 90 (524)
T ss_dssp HHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTC
T ss_pred HHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCc
Confidence 688899999999988753222 112211 147888888874
No 208
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=36.46 E-value=76 Score=19.63 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.++..|+++............+....+|.+++--. .+... ..+.+.++......|++-+..
T Consensus 16 l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (121)
T 2pl1_A 16 LKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVLTA 80 (121)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred HHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEEec
Confidence 55678888998765542111122233346887776322 22222 245566666556788887753
No 209
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=36.10 E-value=17 Score=32.22 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=48.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeH-------
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCM------- 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~------- 68 (192)
+.++|..++++|+.++.++....++ ..++|.||..|-..+..-.+ ..++.+++ +.+|-=++||+-
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~e~-L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~ 551 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAHGI-DSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRF 551 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHHCC-CTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEE
T ss_pred HHHHHhcCCCceEEecHHHhccccc-cccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccc
Confidence 5788999999999999754332221 13899999776433332222 23455665 344445555442
Q ss_pred h----HHHHHHHhCCeeeecC
Q 029484 69 G----LQCIGEAFGGKIVRSP 85 (192)
Q Consensus 69 G----~Q~l~~~~gg~v~~~~ 85 (192)
| +| |+..||.......
T Consensus 552 g~gryFq-LADVLGVd~e~g~ 571 (759)
T 2zuv_A 552 QTGRFFQ-LADVIGVDEERYQ 571 (759)
T ss_dssp ETTEEET-THHHHSEEECCSS
T ss_pred cCccccc-HHhhcCcccccCC
Confidence 1 34 7888886665544
No 210
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=36.00 E-value=75 Score=22.35 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHH-----hc-cCCCeEEECCCC--CCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEEL-----KR-KNPRGVLISPGP--GAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~-----~~-~~~dglii~GG~--~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|++.|.++ ..|.+... ...+ .. .+.|.||.-=-| |...|.+...+.=.+.+.+|||+++.-
T Consensus 32 l~~~l~~~G~~v-~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 32 VRELLKKENVMP-LIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHHTTTCEE-ECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHCCCEE-ECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 456788888864 33433111 1111 11 168888776332 444566655555556778999999763
No 211
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=35.99 E-value=14 Score=27.69 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCeEEECCCCCCCCCc--chhHHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~--~~~~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|+|.++-|||+..-- +.....-..+..++|++||+- ++.++..
T Consensus 66 dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~~ 112 (218)
T 2a6a_A 66 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAKS 112 (218)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHHT
T ss_pred HCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHhh
Confidence 68999999999986321 111111223567899999995 5555554
No 212
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=35.80 E-value=50 Score=22.92 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++..........+.+....+|.||+-= ..+...+ .+.+.+++.....||+-+-.
T Consensus 23 l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (184)
T 3rqi_A 23 LARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXL--HLGNDSGLSLIAPLCDLQPDARILVLTG 87 (184)
T ss_dssp HHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECS--EETTEESHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEec--cCCCccHHHHHHHHHhcCCCCCEEEEeC
Confidence 5667888899876554321112233444688777731 1122222 45666776667889887653
No 213
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=35.74 E-value=1.3e+02 Score=23.85 Aligned_cols=38 Identities=5% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG 40 (192)
+.+.+++.|++++++...+.+..++.. .++|++|+..+
T Consensus 273 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp 312 (402)
T 1e5d_A 273 LAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSP 312 (402)
T ss_dssp HHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECC
Confidence 445667789999999876666555421 27898888654
No 214
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=35.60 E-value=29 Score=22.50 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHhCC-CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..| +++............+....+|.+|+--.-. ..+.-.+++.+++.....|++-+..
T Consensus 30 l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~ 95 (135)
T 3snk_A 30 VATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGG-DLLGKPGIVEARALWATVPLIAVSD 95 (135)
T ss_dssp HHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETT-GGGGSTTHHHHHGGGTTCCEEEEES
T ss_pred HHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCC-CchHHHHHHHHHhhCCCCcEEEEeC
Confidence 567788888 8777554321111122333688777742110 0112245677776666899988764
No 215
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=35.23 E-value=78 Score=19.43 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=34.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.++..|+++............+....+|.+++-=. .+... ..+.+.+++.....|++-+.
T Consensus 17 l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~s 80 (116)
T 3a10_A 17 LKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILLT 80 (116)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEEE
Confidence 45678888998775542111122233346887776422 12222 24556666655678887664
No 216
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=34.99 E-value=55 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+......... .+...++||||+.+.... ...++.+ ...++|++-+.
T Consensus 82 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~~l--~~~~iPvV~~~ 146 (332)
T 2hsg_A 82 IEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVT----EEHVEEL--KKSPVPVVLAA 146 (332)
T ss_dssp HHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCC----HHHHHHH--TTSSSCEEEES
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC----HHHHHHH--HhCCCCEEEEc
Confidence 45667788999988865322111 122237999999874321 1222222 23567766553
No 217
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.64 E-value=83 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.+++.|+++.+...+..+..+ +....+||||+.+...+ ...++.+. ..++|+.-+
T Consensus 90 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~----~~~~~~l~--~~~iPvV~i 153 (344)
T 3kjx_A 90 INQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS----EAARAMLD--AAGIPVVEI 153 (344)
T ss_dssp HHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----HHHHHHHH--HCSSCEEEE
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC----HHHHHHHH--hCCCCEEEE
Confidence 456677889999887654222111 23347999999864321 12333332 246776655
No 218
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=34.61 E-value=51 Score=21.27 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc-cCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|+..|+++............+.. ..+|.+|+--. .+... ..+++.+++.....|++-+.
T Consensus 31 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 31 IQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 556788889877655421111122333 46887776422 11112 23445555444567887764
No 219
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=34.26 E-value=1.2e+02 Score=21.10 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=38.0
Q ss_pred CeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 133 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 133 ~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
..++.+++.++.|...-..++. +..+...|+.. .+++.+++...+..+..
T Consensus 66 ~~eveg~sGgGlVkVtvnG~~e-v~~I~Idp~ll-dpeD~E~LeDLI~aAvN 115 (143)
T 1ybx_A 66 EKTVEASAGGGAVTVVATGRKD-IKEITIKPEVV-DPDDVEMLQDLILAAVN 115 (143)
T ss_dssp HCEEEEEETTTTEEEEEETTCC-EEEEEECGGGC-CTTCHHHHHHHHHHHHH
T ss_pred cCEEEEEECCCEEEEEEecCce-EEEEEECHHHc-CCcCHHHHHHHHHHHHH
Confidence 4577889999999888888875 99999999986 55556666666555443
No 220
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=34.15 E-value=13 Score=29.67 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=7.2
Q ss_pred HHHHHhCCCeEEEE
Q 029484 4 LKYMGELGYHFEVY 17 (192)
Q Consensus 4 ~~~l~~~g~~~~v~ 17 (192)
.+.|++.|+++.++
T Consensus 54 ~~~L~~~g~~~~~~ 67 (354)
T 3ce9_A 54 EKSIKSSNIEIEAV 67 (354)
T ss_dssp HHHHHTTTCEEEEE
T ss_pred HHHHHHcCCeEEEE
Confidence 34455556655444
No 221
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=34.12 E-value=1e+02 Score=22.97 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=23.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.++.....+.+ .+...++||||+.+.
T Consensus 26 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 26 VVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp HHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45677888999876532222222 122347999999864
No 222
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=34.00 E-value=1.1e+02 Score=22.41 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+...++||+|+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 23 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred HHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677888999988764322111 123347999999763
No 223
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=33.99 E-value=83 Score=19.99 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=34.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+...|+..|+++............+....+|.+++--. .+... ..+.+.+++.....|++-+..
T Consensus 19 l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (136)
T 1mvo_A 19 LQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPILMLTA 83 (136)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45677888998765432111112223337887776422 12222 245566666556788887753
No 224
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=33.76 E-value=45 Score=22.59 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=36.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc----cCCCeEEECCCCCCCCC-cchhHHHHHHhCC-CCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQD-SGISLQTVLELGP-TVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dglii~GG~~~~~~-~~~~~~~~~~~~~-~~Pi 63 (192)
+...|+..|+++...-.+ .+.+++.. .++|.|.+|.-.+.... ...+++.+++... ++||
T Consensus 23 v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v 88 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL 88 (137)
T ss_dssp HHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE
Confidence 346789999999977543 56666532 38999999875432211 1234555555432 4565
No 225
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=33.40 E-value=8.3 Score=34.54 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=32.9
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhC-CCCCEEee-------------eHhHHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELG-PTVPLFGV-------------CMGLQCIGEA 76 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~-~~~PilGI-------------C~G~Q~l~~~ 76 (192)
+..+++|++|+.||.++......+.+....+. .++|+.|| |.||.-....
T Consensus 485 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~ 548 (762)
T 3o8l_A 485 ITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNT 548 (762)
T ss_dssp HHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHH
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHH
Confidence 45558999999999765533333333333333 47899998 9999877663
No 226
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=33.22 E-value=30 Score=28.22 Aligned_cols=9 Identities=33% Similarity=0.420 Sum_probs=4.8
Q ss_pred EEeeeHhHH
Q 029484 63 LFGVCMGLQ 71 (192)
Q Consensus 63 ilGIC~G~Q 71 (192)
|+||+.|--
T Consensus 105 IIavGGGsv 113 (407)
T 1vlj_A 105 VLGVGGGSV 113 (407)
T ss_dssp EEEEESHHH
T ss_pred EEEeCChhH
Confidence 555555543
No 227
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=32.95 E-value=91 Score=23.21 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHHHHhCCCeEEEEe--CCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYR--NDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~--~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+.. ....... .+...++||||+.+.
T Consensus 23 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 23 IEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp HHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred HHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566778899998876 3221111 123347999999864
No 228
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=32.45 E-value=50 Score=23.98 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----ccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dglii~GG 40 (192)
+...|+..|+++...-. ..+.+++. ..++|.|.+|..
T Consensus 108 va~~l~~~G~~v~~LG~-~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 108 VAMMLESGGFTVYNLGV-DIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp HHHHHHHTTCEEEECCS-SBCHHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEecc
Confidence 45678999999999876 46666653 238999999975
No 229
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=32.39 E-value=59 Score=24.10 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=37.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++..........+.+....+|.|++-=. .+... ..+.+.+++.....||+.+..
T Consensus 145 l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~--mp~~~G~~l~~~ir~~~~~~piI~lt~ 209 (254)
T 2ayx_A 145 LADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTLPVIGVTA 209 (254)
T ss_dssp HHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCSCEEEEES
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 45678888998876653211122333447887776321 12222 245666766556799998864
No 230
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=32.33 E-value=82 Score=19.67 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.++..|+++............+....+|.+++--. .+... ..+.+.+++.....|++-+..
T Consensus 19 l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 19 LNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 45677888988764432111112223347887776421 12222 245566666667789887753
No 231
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=31.82 E-value=28 Score=28.04 Aligned_cols=9 Identities=22% Similarity=0.339 Sum_probs=4.9
Q ss_pred EEeeeHhHH
Q 029484 63 LFGVCMGLQ 71 (192)
Q Consensus 63 ilGIC~G~Q 71 (192)
|+||+.|--
T Consensus 102 IIavGGGsv 110 (371)
T 1o2d_A 102 VVGLGGGSP 110 (371)
T ss_dssp EEEEESHHH
T ss_pred EEEeCChHH
Confidence 556655543
No 232
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=31.73 E-value=84 Score=20.88 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=11.6
Q ss_pred CCCCCEEeeeHhHHH
Q 029484 58 GPTVPLFGVCMGLQC 72 (192)
Q Consensus 58 ~~~~PilGIC~G~Q~ 72 (192)
+.++.++|=|+|..+
T Consensus 103 ~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 103 ENGIEPVIGCTLVML 117 (122)
T ss_dssp HTTCEEEESCHHHHH
T ss_pred HcCCeEECCcCeEEe
Confidence 357888888888765
No 233
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=31.71 E-value=83 Score=20.05 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|+..|+++............+....+|.+++--. .+...+ .+.+.+++.....|++-+.
T Consensus 19 l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (132)
T 3crn_A 19 TKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIMVT 82 (132)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEEEe
Confidence 55678888998765432111112233346887776421 122222 3556666656678888765
No 234
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=31.62 E-value=68 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.3
Q ss_pred CcHHHHHHhCCCeEEEEeC
Q 029484 1 MTFLKYMGELGYHFEVYRN 19 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~ 19 (192)
|+.+++|.+.|++|.+...
T Consensus 22 ~s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 22 EAAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp HHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHhCCCEEEEEeC
Confidence 4678888899999888865
No 235
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.16 E-value=90 Score=19.75 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=35.1
Q ss_pred HHHHHHhCCC--eEEEEeCCCCCHHHHhc-------cCCCeEEECCCCCCCCCcchhHHHHHHhC--CCCCEEeeeH
Q 029484 3 FLKYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~--~~~v~~~~~~~~~~~~~-------~~~dglii~GG~~~~~~~~~~~~~~~~~~--~~~PilGIC~ 68 (192)
+.+.|+..|. .+............+.. ..+|.+++--... ..+...+++.+++.. ...|++.+..
T Consensus 18 l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 18 IQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP-KKDGREVLAEIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp HHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS-SSCHHHHHHHHHHSTTGGGSCEEEEES
T ss_pred HHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCC-cccHHHHHHHHHcCcccccccEEEEec
Confidence 5677888888 55544321111222332 4688887753311 112224556666644 6789888764
No 236
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.92 E-value=55 Score=20.97 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccC-CCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~-~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~ 68 (192)
+.+.|++.|+++............+.... +|.||+--. ....+.-.+++.+++. ....|++.+..
T Consensus 23 l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 23 LILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR-MQPESGLDLIRTIRASERAALSIIVVSG 89 (136)
T ss_dssp HHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC-CSSSCHHHHHHHHHTSTTTTCEEEEEES
T ss_pred HHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc-CCCCCHHHHHHHHHhcCCCCCCEEEEeC
Confidence 56778888998877643111112222234 777776432 1111222455666665 46788888764
No 237
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.71 E-value=38 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHh----ccCCCeEEECCCCC
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPG 42 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dglii~GG~~ 42 (192)
...|+..|++|...-.+ .|.+++. ..++|.|.++|+..
T Consensus 113 ~~~l~~~G~~Vi~LG~~-vp~e~iv~~~~~~~~d~v~l~~S~l 154 (215)
T 3ezx_A 113 TTMLGANGFQIVDLGVD-VLNENVVEEAAKHKGEKVLLVGSAL 154 (215)
T ss_dssp HHHHHHTSCEEEECCSS-CCHHHHHHHHHHTTTSCEEEEEECS
T ss_pred HHHHHHCCCeEEEcCCC-CCHHHHHHHHHHcCCCEEEEEchhc
Confidence 45789999999998764 6766653 33899999955433
No 238
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.55 E-value=87 Score=20.54 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=35.0
Q ss_pred HHHHHHh-CCCeEE-EEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGE-LGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~-~g~~~~-v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+. .|+.+. ...........+....+|.||+--.-. ..+...+++.+++.....|++.+..
T Consensus 21 l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ls~ 87 (153)
T 3cz5_A 21 YRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAARILIFTM 87 (153)
T ss_dssp HHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCeEEEEEC
Confidence 4566776 677766 333211112223334688887743211 1122345667776667889988764
No 239
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=30.55 E-value=98 Score=21.90 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++............+....+|.+++--. .+...+ .+.+.+++.....|++-+..
T Consensus 18 l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 18 ITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 55678888998765532111112233347888877432 122222 45666666667899988864
No 240
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=30.43 E-value=76 Score=25.83 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 43 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~ 43 (192)
|.+.++++|.+..++-..+.+.++|.+.++|+.|+.+=|-.
T Consensus 286 L~~ll~~~Gkk~y~i~vg~inp~KLanF~iD~fV~vaCPrl 326 (378)
T 3lzd_A 286 IVKLLKKHGREARLIVMNDVNYHKLEGFPFEAYVVVACPRV 326 (378)
T ss_dssp HHHHHHHTTCEEEEEEESSCCHHHHTTSCCSEEEECSCTHH
T ss_pred HHHHHHHcCCcEEEEEeCCCCHHHHhCCCCCEEEEecCCCc
Confidence 56777899999999888889999999888999999986543
No 241
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=30.12 E-value=1e+02 Score=21.40 Aligned_cols=61 Identities=10% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHhCCCeEEEEeCCC-------CC------HHHHh-ccCCCeEEECCCCCCCCCcchhHHHHHHhCC-CCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDE-------LT------VEELK-RKNPRGVLISPGPGAPQDSGISLQTVLELGP-TVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-------~~------~~~~~-~~~~dglii~GG~~~~~~~~~~~~~~~~~~~-~~PilGIC 67 (192)
+.++|+..|+++...+... .. .+-+. ...+|.++|..|-+ |..+.++.+++ + |+.|.+++
T Consensus 66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~---DF~plv~~lr~--~~G~~V~v~g 140 (165)
T 2qip_A 66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDG---DFSLLVERIQQ--RYNKKVTVYG 140 (165)
T ss_dssp HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCG---GGHHHHHHHHH--HHCCEEEEEE
T ss_pred HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECCh---hHHHHHHHHHH--HcCcEEEEEe
Confidence 5678899999988665421 11 11111 13789888887744 22333444444 2 68888887
Q ss_pred H
Q 029484 68 M 68 (192)
Q Consensus 68 ~ 68 (192)
.
T Consensus 141 ~ 141 (165)
T 2qip_A 141 V 141 (165)
T ss_dssp C
T ss_pred C
Confidence 4
No 242
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=30.11 E-value=49 Score=25.55 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=25.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHH------HhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~------~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+...+. ...+ +....+||||+.+.
T Consensus 86 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 86 IQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp HHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 4567788899999988654 2211 22348999999976
No 243
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=30.02 E-value=29 Score=27.80 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=4.9
Q ss_pred CCCeEEECCC
Q 029484 31 NPRGVLISPG 40 (192)
Q Consensus 31 ~~dglii~GG 40 (192)
++|.||-.||
T Consensus 86 ~~d~IIavGG 95 (370)
T 1jq5_A 86 EAAIVIGVGG 95 (370)
T ss_dssp TCSEEEEEES
T ss_pred CCCEEEEeCC
Confidence 4455554444
No 244
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.58 E-value=50 Score=23.11 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=27.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHh----ccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~----~~~~dglii~GG 40 (192)
+...|+..|++|.....+ .+.+++. ..++|.|.+|.-
T Consensus 38 va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~~~diV~lS~~ 78 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLR-QTPEQVAMAAVQEDVDVIGVSIL 78 (161)
T ss_dssp HHHHHHHTTCEEECCCSB-CCHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEee
Confidence 356789999999988754 5666653 348999999864
No 245
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.35 E-value=76 Score=20.54 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=36.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCc-chhHHHHHH--hCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~--~~~~~PilGIC~ 68 (192)
+.+.|+..|..+.+....... ...+....+|.||+--. .+... -.+++.+++ ...+.|++.+..
T Consensus 21 l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 21 IRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccCCCEEEEeC
Confidence 567788899985555442111 12233346887777422 12222 245566665 456899998874
No 246
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.87 E-value=40 Score=21.90 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=36.0
Q ss_pred HHHHHHh-CCCeEEEEeCCCCCHHHHhc-cCCCeEEECCCCCCC-CCc-chhHHHHHH--hCCCCCEEeeeH
Q 029484 3 FLKYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-QDS-GISLQTVLE--LGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~-~~~-~~~~~~~~~--~~~~~PilGIC~ 68 (192)
+.+.|+. .|+++............+.. ..+|.||+--. .+ ... -.+++.+++ .....|++-+..
T Consensus 20 l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 20 TKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp HHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGTTCCEEEEES
T ss_pred HHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccCCCCEEEEeC
Confidence 5667888 89988755431111112233 46887777421 11 111 235566666 567899988774
No 247
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=28.53 E-value=99 Score=20.20 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|....+..+.... ...+....+|.||+--.- ...+.-.+++.+++.....||+-+..
T Consensus 36 l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 36 MCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp HHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeEEEEeC
Confidence 456677777444444332111 122333478877775321 11222345666776667889888774
No 248
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.43 E-value=73 Score=22.32 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH---hccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~---~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++..... ..+.+ ....+|.+|+-= ..+...+ .+.+.+++...+.|++-+..
T Consensus 20 l~~~L~~~g~~v~~~~~---~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 20 LRNLLRSAGFEVETFDC---ASTFLEHRRPEQHGCLVLDM--RMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp HHHHHHTTTCEEEEESS---HHHHHHHCCTTSCEEEEEES--CCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHhCCceEEEcCC---HHHHHHhhhccCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 55677888988775432 12222 223577666532 1222222 45666666667899988763
No 249
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=28.42 E-value=1.1e+02 Score=19.09 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=34.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.++..|+.+............+....+|.+++-= ..+... ..+.+.+++.....|++-+..
T Consensus 19 l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~--~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (126)
T 1dbw_A 19 LAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDL--RMPDMSGVELLRNLGDLKINIPSIVITG 83 (126)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEEC--CSTTSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEEC--CCCCCCHHHHHHHHHhcCCCCCEEEEEC
Confidence 4567788898876543211111122333577666532 112222 245566666667789887753
No 250
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=28.29 E-value=1.2e+02 Score=20.99 Aligned_cols=36 Identities=14% Similarity=0.493 Sum_probs=24.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++.+..+ .+.++.+ .++||+||=+|
T Consensus 34 l~~~a~~~g~~~~~~QSN--~EgeLid~Ih~a~~~~dgiiiNpg 75 (143)
T 1gqo_A 34 LFQFAEALHIQLTFFQSN--HEGDLIDAIHEAEEQYSGIVLNPG 75 (143)
T ss_dssp HHHHHHHHTCEEEEEECS--CHHHHHHHHHHHTTTCSEEEEECG
T ss_pred HHHHHHHcCCEEEEEeeC--CHHHHHHHHHHhhhcCcEEEEccc
Confidence 445667789999999753 2344321 16899999876
No 251
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=28.03 E-value=2.2e+02 Score=22.89 Aligned_cols=83 Identities=14% Similarity=0.078 Sum_probs=43.2
Q ss_pred HHHHHHhC--CCeEEEEeC-CCCCHHHHhccCCCeEEECCCCCCCCC-------cchhHHHHHHh-CCCCCEE---eeeH
Q 029484 3 FLKYMGEL--GYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQTVLEL-GPTVPLF---GVCM 68 (192)
Q Consensus 3 l~~~l~~~--g~~~~v~~~-~~~~~~~~~~~~~dglii~GG~~~~~~-------~~~~~~~~~~~-~~~~Pil---GIC~ 68 (192)
+++++++. +..+..-.. .......+.....|+|+++.|+|+..+ ..+.+..+.+. +...||+ ||..
T Consensus 131 ~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVIAdGGI~~ 210 (361)
T 3r2g_A 131 TLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIVADGGIKT 210 (361)
T ss_dssp HHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEEEESCCCS
T ss_pred HHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 45566664 555554211 111112233347899999777765421 11234445443 2222999 7766
Q ss_pred hHHHH-HHHhCCeeeecC
Q 029484 69 GLQCI-GEAFGGKIVRSP 85 (192)
Q Consensus 69 G~Q~l-~~~~gg~v~~~~ 85 (192)
|-.+. +.++|+...-..
T Consensus 211 ~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 211 SGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 66555 456787665543
No 252
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=27.54 E-value=1e+02 Score=23.44 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEE-EEeCCCCCHHHHhccCCCeEEECCCCCCC-CCc-chhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAP-QDS-GISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dglii~GG~~~~-~~~-~~~~~~~~~~~~~~PilGIC 67 (192)
+...|+..|+++. .........+.+....+|.||+== ..| ... -.+.+.+++.. .+||+.+-
T Consensus 176 l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~--~MPd~mdG~e~~~~ir~~~-~~piI~lT 240 (286)
T 3n0r_A 176 IEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADI--QLADGSSGIDAVKDILGRM-DVPVIFIT 240 (286)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEES--CCTTSCCTTTTTHHHHHHT-TCCEEEEE
T ss_pred HHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcC--CCCCCCCHHHHHHHHHhcC-CCCEEEEe
Confidence 4567889999988 554321122233444788777631 122 122 24556666655 89999875
No 253
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=27.47 E-value=1.4e+02 Score=20.91 Aligned_cols=73 Identities=7% Similarity=0.010 Sum_probs=45.6
Q ss_pred HHHHHh-CCCeEEEEeCCCC-C----HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeeeHhHHHHHH
Q 029484 4 LKYMGE-LGYHFEVYRNDEL-T----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 4 ~~~l~~-~g~~~~v~~~~~~-~----~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Q~l~~ 75 (192)
.++|++ .|+.++.+.--.. . .+-+...++|.||.+..|........-...+++ ...++|++=-=.+...+..
T Consensus 49 a~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~ 128 (152)
T 1b93_A 49 GNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQ 128 (152)
T ss_dssp HHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHT
T ss_pred HHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 577888 8999998853111 1 122344589999999886553221222334443 4578999877777777766
Q ss_pred H
Q 029484 76 A 76 (192)
Q Consensus 76 ~ 76 (192)
+
T Consensus 129 a 129 (152)
T 1b93_A 129 S 129 (152)
T ss_dssp S
T ss_pred H
Confidence 4
No 254
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=27.44 E-value=1.5e+02 Score=20.79 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+...+.|++++.+..+ .+.++.+ .++||+||=+|
T Consensus 41 l~~~a~~~g~~~~~~QSN--~EgeLId~Ih~a~~~~dgiiINpg 82 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSN--AEHALIDSIHQARGNTDFILINPA 82 (153)
T ss_dssp HHHHHHHTTEEEEEEECS--CHHHHHHHHHHHTTTCSEEEEECG
T ss_pred HHHHHHHcCCEEEEEecC--CHHHHHHHHHHhhhcCceEEEccc
Confidence 345566789999999753 2344321 26899999887
No 255
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=27.21 E-value=1.6e+02 Score=20.49 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=12.7
Q ss_pred HHHHHHhCC--CeEEEEeCCC
Q 029484 3 FLKYMGELG--YHFEVYRNDE 21 (192)
Q Consensus 3 l~~~l~~~g--~~~~v~~~~~ 21 (192)
+.+.+++.| .+++++...+
T Consensus 25 ~~~~l~~~g~~~~v~~~dl~~ 45 (201)
T 1t5b_A 25 FIEQWREKHVADEITVRDLAA 45 (201)
T ss_dssp HHHHHHHHCTTCEEEEEETTT
T ss_pred HHHHHHHhCCCCeEEEEeccC
Confidence 344566655 8899888654
No 256
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=26.86 E-value=18 Score=27.00 Aligned_cols=43 Identities=26% Similarity=0.555 Sum_probs=26.7
Q ss_pred CCCeEEECCCCCCCCCc--chhHHHHHHhCCCCCEEeeeHhHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~--~~~~~~~~~~~~~~PilGIC~G~Q~l~ 74 (192)
++|+|.++-|||+..-- +.....-..+..++|++||+- ++.++
T Consensus 56 dld~Iav~~GPGsfTglRig~~~AkgLa~~~~iPl~gVst-L~a~a 100 (213)
T 3r6m_A 56 DLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVST-LAAMA 100 (213)
T ss_dssp TCSEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEH-HHHHH
T ss_pred HccEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEEEEcC-HHHHH
Confidence 78999999999987210 000111123457899999984 33333
No 257
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=26.82 E-value=1.2e+02 Score=21.53 Aligned_cols=63 Identities=8% Similarity=0.160 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|+..|+++............+....+|.+++--. .+... -.+.+.+++.....|++-+.
T Consensus 23 l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 23 LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 56678888998765432111112233347888877432 12222 24556666666788988765
No 258
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=26.70 E-value=1.1e+02 Score=21.45 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++.+..+ .+.++.+ .++||+||=+|
T Consensus 35 l~~~a~~~g~~l~~~QSN--~EGeLId~Ih~a~~~~dgiIINpg 76 (154)
T 1uqr_A 35 LQQSAQAQGYELDYFQAN--GEESLINRIHQAFQNTDFIIINPG 76 (154)
T ss_dssp HHHHHHHTTCEEEEEECS--SHHHHHHHHHHTTTTCCEEEEECT
T ss_pred HHHHHHHCCCEEEEEeeC--CHHHHHHHHHHhhhcCcEEEECcc
Confidence 455667889999999853 2344321 16899999876
No 259
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=26.68 E-value=30 Score=25.91 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=28.2
Q ss_pred CCCeEEECCCCCCCCCcchh----HHHHHHhCCCCCEEeeeHhHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDSGIS----LQTVLELGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~----~~~~~~~~~~~PilGIC~G~Q~l~~ 75 (192)
++|+|.++-|||+.. +-. ...-..+..++|++||+--.-+...
T Consensus 55 did~Iav~~GPGsft--glRig~~~ak~la~~~~~Pl~~V~~l~a~a~~ 101 (231)
T 2gel_A 55 EIDALAFGRGPGSFT--GVRIGIGIAQGLALGANLPMIGVSTLATMAQG 101 (231)
T ss_dssp GCSEEEEECCSSCHH--HHHHHHHHHHHHHHTTTCCEEEECHHHHHHHH
T ss_pred HCCEEEEEcCCChhH--hHHHHHHHHHHHHHHcCCCEEEeccHHHHHHH
Confidence 689999999999873 211 1111235678999999964444433
No 260
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=26.26 E-value=53 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCeEEECC-CCCCCCCcchhHHHHHH-hCCCCCEEe
Q 029484 31 NPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 31 ~~dglii~G-G~~~~~~~~~~~~~~~~-~~~~~PilG 65 (192)
.++|||+-| |.|+......+.+.+++ .++++||.=
T Consensus 253 g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~ 289 (358)
T 2him_A 253 PVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVN 289 (358)
T ss_dssp SCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 689999998 77776543456666654 567888864
No 261
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.99 E-value=1.1e+02 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+....+.. .+.+....+|||| .+.
T Consensus 27 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 27 LSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp HHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred HHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecC
Confidence 456778889999998764111 2233445899999 543
No 262
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=25.80 E-value=40 Score=28.03 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=5.7
Q ss_pred CCCeEEECCC
Q 029484 31 NPRGVLISPG 40 (192)
Q Consensus 31 ~~dglii~GG 40 (192)
++|.||-.||
T Consensus 145 ~~D~IIAvGG 154 (450)
T 1ta9_A 145 DTQVIIGVGG 154 (450)
T ss_dssp TCCEEEEEES
T ss_pred CCCEEEEeCC
Confidence 4566665555
No 263
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=25.52 E-value=69 Score=22.79 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=34.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+...|+..|+++............+....+|.+| .++ .+.-.+.+.+++.....|++-+..-
T Consensus 16 l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~----~~g~~~~~~lr~~~~~~~ii~lt~~ 77 (223)
T 2hqr_A 16 IEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEKHSSIVVLVSSDN 77 (223)
T ss_dssp HHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECC----TTHHHHHHHHHHHCTTSEEEEEESS
T ss_pred HHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCC----CCHHHHHHHHHhCCCCCcEEEEECC
Confidence 5567788899887543211112223334789888 222 1112455666655227999888643
No 264
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=25.26 E-value=1.3e+02 Score=21.02 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=24.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+..++.|++++.+..+ .+.++.+ .++||+||=+|
T Consensus 36 l~~~a~~~g~~~~~~QSN--~EgeLId~Ih~a~~~~dgiiINpg 77 (146)
T 1h05_A 36 IEREAAELGLKAVVRQSD--SEAQLLDWIHQAADAAEPVILNAG 77 (146)
T ss_dssp HHHHHHHTTCEEEEEECS--CHHHHHHHHHHHHHHTCCEEEECG
T ss_pred HHHHHHHcCCEEEEEeeC--CHHHHHHHHHHhhhcCcEEEECch
Confidence 455667889999999863 2344322 15899999876
No 265
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=25.21 E-value=2.2e+02 Score=21.45 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=23.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......+.+ .+...++||||+.+.
T Consensus 25 ~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 25 AQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp HHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45667888999887621122222 223348999999864
No 266
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.18 E-value=1.2e+02 Score=22.04 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=37.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC~ 68 (192)
+...|+..|+++..........+.+....+|.+|+-=. .+...+ .+++.+++.....||+-+..
T Consensus 39 l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii~lt~ 103 (250)
T 3r0j_A 39 LSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGIDAPALFLTA 103 (250)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEEEEC
Confidence 56678888998875542111122233347898887422 222222 45667776667899988775
No 267
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=25.15 E-value=84 Score=23.36 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHHHhC-CCeEEEEeC--CCCCHH-------HHhccCCCeEEECCC
Q 029484 3 FLKYMGEL-GYHFEVYRN--DELTVE-------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~--~~~~~~-------~~~~~~~dglii~GG 40 (192)
+.+.+++. |+.+.+... ...+.+ .+...++||||+.+.
T Consensus 31 i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 31 IREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp HHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred HHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 45667777 888877642 122222 233448999999974
No 268
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=25.03 E-value=2.3e+02 Score=21.67 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH-------HHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~-------~~~~~~~dglii~G 39 (192)
+.+.+++.|+++.+......+.+ .+...++||||+.+
T Consensus 83 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 83 ILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp HHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred HHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 45667889999988765432211 12334799999975
No 269
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=25.00 E-value=1.7e+02 Score=20.38 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=24.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cC-CCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KN-PRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~-~dglii~GG 40 (192)
+.+..++.|++++.+..+ .+.++.+ .+ +||+||=+|
T Consensus 33 l~~~a~~~g~~v~~~QSN--~EgeLId~Ih~a~~~~~dgiIINpg 75 (149)
T 2uyg_A 33 CEAWGAELGLGVVFRQTN--YEGQLIEWVQQAHQEGFLAIVLNPG 75 (149)
T ss_dssp HHHHHHHTTCCEEEEECS--CHHHHHHHHHHTTTTTCSEEEEECG
T ss_pred HHHHHHHcCCEEEEEeeC--CHHHHHHHHHHhccCCeeEEEEccc
Confidence 455667889999999753 2344321 14 899999876
No 270
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=24.99 E-value=1.5e+02 Score=23.33 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~G 39 (192)
+++.+++.|.+++++...+.+..++.. .++|++|+.-
T Consensus 272 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~ 310 (398)
T 1ycg_A 272 LMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGS 310 (398)
T ss_dssp HHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEEC
T ss_pred HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEEC
Confidence 445667789999888775555544421 2688888864
No 271
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=24.12 E-value=11 Score=30.06 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=11.2
Q ss_pred HhccCCCeEEECCCCCC
Q 029484 27 LKRKNPRGVLISPGPGA 43 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~ 43 (192)
+...++|++|+.||.++
T Consensus 89 l~~~~Id~LvvIGGdgS 105 (319)
T 1zxx_A 89 LKKHGIDAVVVIGGDGS 105 (319)
T ss_dssp HHHTTCCEEEEEECHHH
T ss_pred HHHhCCCEEEEECCchH
Confidence 34447788888887553
No 272
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=23.95 E-value=38 Score=22.92 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=20.8
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
|-||+...+.....++..|+..+...
T Consensus 45 QVhpd~gISskAm~ImnSfvnDifer 70 (123)
T 2nqb_D 45 QVHPDTGISSKAMSIMNSFVNDIFER 70 (123)
T ss_dssp HHCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 89999766778888899998876654
No 273
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.88 E-value=90 Score=23.10 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=24.3
Q ss_pred HHHHHHhCCCe-EEEEeCCCCCH------HHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYH-FEVYRNDELTV------EELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~-~~v~~~~~~~~------~~~~~~~~dglii~G 39 (192)
+.+.+++.|++ +.+........ +.+...++||+|+.+
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 32 IQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp HHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 45677889999 77776532221 122334899999998
No 274
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.51 E-value=61 Score=21.10 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=36.0
Q ss_pred HHHHHHhCC-CeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCCc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELG-YHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g-~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..| +++............+.. ..+|.||+--. .+... ..+++.++......|++-+..
T Consensus 36 l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii~lt~ 103 (146)
T 4dad_A 36 LARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRLHPGLTCLLVTT 103 (146)
T ss_dssp HHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHhCCCCcEEEEeC
Confidence 567788888 888776432111112222 46887777432 12112 234566666667889887764
No 275
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.50 E-value=1.5e+02 Score=19.76 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHHHHhCCCeEE-EEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHh--CCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~-v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~--~~~~PilGIC~ 68 (192)
+.+.|+..|++++ .........+.+....||.|++== ..|...| .+.+.+++. ..++||+-+-.
T Consensus 28 l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~--~MP~mdG~el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 28 VKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDW--NMPGMQGIDLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHhCCCCCCCeEEEEEC
Confidence 5678889998743 333211112223334788777632 3344444 466777753 36799887753
No 276
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.10 E-value=2.4e+02 Score=21.69 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=19.1
Q ss_pred CCeEEEEeCCCCC---HH----HHhccCCCeEEECCC
Q 029484 11 GYHFEVYRNDELT---VE----ELKRKNPRGVLISPG 40 (192)
Q Consensus 11 g~~~~v~~~~~~~---~~----~~~~~~~dglii~GG 40 (192)
|+.+.++...... .. .+....+||||+.+.
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 101 DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 8888887654222 11 233348999999864
No 277
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=22.98 E-value=92 Score=27.65 Aligned_cols=67 Identities=9% Similarity=-0.015 Sum_probs=42.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcc-CCCeEEECCCCCCCC----Ccc-hhHHHHHHhCCCCCEEeeeHhHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ----DSG-ISLQTVLELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglii~GG~~~~~----~~~-~~~~~~~~~~~~~PilGIC~G~Q 71 (192)
|...|++.|++|......+.....+... ++|.||+.=. .|. ..+ .+++.+++...++||+-+..=-+
T Consensus 24 L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 24 LADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHH
T ss_pred HHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 5778899999988776422112223333 4899998732 232 111 35677777777899998776443
No 278
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=22.71 E-value=1.1e+02 Score=20.00 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=32.8
Q ss_pred HHHHHHhC-CCe-EEEEeCCCCCHHHHhc-cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~-g~~-~~v~~~~~~~~~~~~~-~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.+.|+.. |.. +............+.. ..+|.+|+--.-. ..+...+++.+++.....|++.++.-
T Consensus 19 l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 19 AKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP-DAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCC-CCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 45667776 773 4444321111222343 4688877753211 11223456677766678999988754
No 279
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=22.65 E-value=42 Score=22.83 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=21.0
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
|-||+...+.....++..|+..+...
T Consensus 48 QVhpd~gISskAm~ImnSfvnDifer 73 (126)
T 1tzy_B 48 QVHPDTGISSKAMGIMNSFVNDIFER 73 (126)
T ss_dssp HHCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 89999766778888999998876654
No 280
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=22.53 E-value=1e+02 Score=22.33 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH------HHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~------~~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+........ +.+...++||+|+.+.
T Consensus 24 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 24 MLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4566788899998887532211 1223347999999875
No 281
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=22.27 E-value=24 Score=22.97 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCCCCC--Cc-chhHHHHHHhCCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DS-GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~~~~--~~-~~~~~~~~~~~~~~PilGIC~ 68 (192)
+.+.|+..|+++..... ..+. ....+|.||+--. .+. .. -.+++.+++.....|++-+..
T Consensus 22 l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~~~~~~ii~~s~ 88 (136)
T 3kto_A 22 LSKLLSPLDVTIQCFAS----AESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKRGFHLPTIVMAS 88 (136)
T ss_dssp HHHHHTTSSSEEEEESS----HHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHCCcEEEEeCC----HHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhCCCCCCEEEEEc
Confidence 55677888988775542 2322 2225777766321 122 12 245566666667889887764
No 282
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=22.26 E-value=39 Score=27.49 Aligned_cols=9 Identities=44% Similarity=0.486 Sum_probs=4.6
Q ss_pred EEeeeHhHH
Q 029484 63 LFGVCMGLQ 71 (192)
Q Consensus 63 ilGIC~G~Q 71 (192)
|+||+.|--
T Consensus 110 IIavGGGs~ 118 (387)
T 3uhj_A 110 LVGVGGGKT 118 (387)
T ss_dssp EEEESSHHH
T ss_pred EEEeCCcHH
Confidence 555555543
No 283
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=22.00 E-value=2.2e+02 Score=23.91 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=35.5
Q ss_pred cCCCeEEECCCCCCCCCc-------chh---HHHHHH-h-CCCCCEE---eeeHhHHHH-HHHhCCeeeecC
Q 029484 30 KNPRGVLISPGPGAPQDS-------GIS---LQTVLE-L-GPTVPLF---GVCMGLQCI-GEAFGGKIVRSP 85 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~~-------~~~---~~~~~~-~-~~~~Pil---GIC~G~Q~l-~~~~gg~v~~~~ 85 (192)
...|+|++..|+|+.... .+. +..+.+ . +.++||+ ||..+-.+. +.++|+......
T Consensus 317 aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 317 AGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 368999997777774321 111 222222 1 3479999 898888887 667887766654
No 284
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=21.99 E-value=75 Score=21.78 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=15.6
Q ss_pred CeEEEEeCCCCCHHHHhccCCCeEEEC
Q 029484 12 YHFEVYRNDELTVEELKRKNPRGVLIS 38 (192)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~~~~dglii~ 38 (192)
+.+++++..+.+.+++. ++|.||+.
T Consensus 29 ~~v~~~~~~~~~~~~l~--~~d~ii~g 53 (169)
T 1czn_A 29 SIVDLNDIANADASDLN--AYDYLIIG 53 (169)
T ss_dssp TTEEEEEGGGCCGGGGG--GCSEEEEE
T ss_pred cceEEEEhhhCCHhHHh--hCCEEEEE
Confidence 35777776544444554 67877775
No 285
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=21.93 E-value=2.9e+02 Score=21.69 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHhCCCe----EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 4 LKYMGELGYH----FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 4 ~~~l~~~g~~----~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
++...++|++ +.-+++. .+.+++...-.--+++.||+... +...+++.+++
T Consensus 206 aRiAaELGADs~~tivK~~y~-e~f~~Vv~a~~vPVViaGG~k~~-~~~e~L~~v~~ 260 (307)
T 3fok_A 206 VAIAAGLGNDSSYTWMKLPVV-EEMERVMESTTMPTLLLGGEGGN-DPDATFASWEH 260 (307)
T ss_dssp HHHHHTCSSCCSSEEEEEECC-TTHHHHGGGCSSCEEEECCSCC---CHHHHHHHHH
T ss_pred HHHHHHhCCCcCCCEEEeCCc-HHHHHHHHhCCCCEEEeCCCCCC-CHHHHHHHHHH
Confidence 3445678999 8888875 45666655445568999986543 33344454443
No 286
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.57 E-value=1.1e+02 Score=19.61 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHhCCC--eEEEEeCCCCCHHHHhc----------cCCCeEEECCCCCCCCCc-chhHHHHHHhC--CCCCEEeee
Q 029484 3 FLKYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~--~~~v~~~~~~~~~~~~~----------~~~dglii~GG~~~~~~~-~~~~~~~~~~~--~~~PilGIC 67 (192)
+.+.|+..|. .+............+.. ..+|.+|+--.- +... ..+.+.+++.. ...|++.+.
T Consensus 22 l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~~~~ii~~t 99 (149)
T 1k66_A 22 FQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PGTDGREVLQEIKQDEVLKKIPVVIMT 99 (149)
T ss_dssp HHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SSSCHHHHHHHHTTSTTGGGSCEEEEE
T ss_pred HHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CCCCHHHHHHHHHhCcccCCCeEEEEe
Confidence 5677888888 55555421111222332 467877775321 2222 23445555433 578988876
Q ss_pred H
Q 029484 68 M 68 (192)
Q Consensus 68 ~ 68 (192)
.
T Consensus 100 ~ 100 (149)
T 1k66_A 100 T 100 (149)
T ss_dssp S
T ss_pred C
Confidence 4
No 287
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=21.46 E-value=13 Score=29.58 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=24.2
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee-------------eHhHHHHHH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 75 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI-------------C~G~Q~l~~ 75 (192)
+...++|++|+.||.++.... ..+.+ .++|+.|| |.||.-.+.
T Consensus 90 l~~~~Id~LvvIGGdgS~~~a----~~L~~--~~i~vvgiPkTIDNDl~~td~t~GfdTA~~ 145 (320)
T 1pfk_A 90 LKKRGIDALVVIGGDGSYMGA----MRLTE--MGFPCIGLPGTIDNDIKGTDYTIGFFTALS 145 (320)
T ss_dssp HHHTTCCEEEEEECHHHHHHH----HHHHH--TTCCEEEEEBCTTCCCTTCSCCBTHHHHHH
T ss_pred HHHcCCCEEEEECCCchHHHH----HHHHh--hCCCEEEEeccccCCCCCCcCCCCHHHHHH
Confidence 344477888888875533111 11222 25777765 788776554
No 288
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=21.16 E-value=1e+02 Score=24.39 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=23.8
Q ss_pred CCCeEEECC-CCCCCCCcchhHHHHHH-h-CCCCCEEee
Q 029484 31 NPRGVLISP-GPGAPQDSGISLQTVLE-L-GPTVPLFGV 66 (192)
Q Consensus 31 ~~dglii~G-G~~~~~~~~~~~~~~~~-~-~~~~PilGI 66 (192)
.++|||+-| |.|+.. ..+.+.+++ . ++++||.=+
T Consensus 239 g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~~gi~VV~~ 275 (331)
T 1agx_A 239 GVKAIIHAGTGNGSMA--NYLVPEVRKLHDEQGLQIVRS 275 (331)
T ss_dssp TCSEEEEEEBTTTBCC--TTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEeeECCCCCC--HHHHHHHHHHHHcCCCEEEEE
Confidence 689999987 666654 456666654 5 788998644
No 289
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.97 E-value=2.5e+02 Score=20.80 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=30.9
Q ss_pred HHHHHHhCCC---eEEEE--eCCCCCHH-------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGY---HFEVY--RNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~---~~~v~--~~~~~~~~-------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+ ++.+. ..+ .+.+ .+...++||||+.|.+. . ..+.....++|++-+.
T Consensus 23 i~~~l~~~gy~g~~v~l~~~~~~-~~~~~~~~~~~~l~~~~vDgII~~~~~~-------~-~~~~~~~~~iPvV~~~ 90 (295)
T 3lft_A 23 IQDGLAEEGYKDDQVKIDFMNSE-GDQSKVATMSKQLVANGNDLVVGIATPA-------A-QGLASATKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHTTCCGGGEEEEEEECT-TCHHHHHHHHHHHTTSSCSEEEEESHHH-------H-HHHHHHCSSSCEEEES
T ss_pred HHHHHHHcCCCCCceEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCcHH-------H-HHHHHcCCCCCEEEEe
Confidence 4567788899 76553 322 2222 13334799999986311 1 1122234678877653
No 290
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.97 E-value=1.6e+02 Score=23.41 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=30.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC 67 (192)
+.+.+++.|+++.+....+.. .+.+....+||||+.. ......+.+ ...++|++-+.
T Consensus 46 i~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~------~~~~~~~~l--~~~~iPvV~i~ 104 (412)
T 4fe7_A 46 VGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF------DDKQIEQAL--ADVDVPIVGVG 104 (412)
T ss_dssp HHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET------TCHHHHHHH--TTCCSCEEEEE
T ss_pred HHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec------CChHHHHHH--hhCCCCEEEec
Confidence 456677889999888643221 2233444799999932 111222222 34678877654
No 291
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=20.94 E-value=1.3e+02 Score=19.33 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|+++++........++.. .++|.++++.
T Consensus 24 l~~~~~~~gi~~~i~~~~~~~~~~~~-~~~D~Ii~t~ 59 (109)
T 2l2q_A 24 IEKYAKSKNINATIEAIAETRLSEVV-DRFDVVLLAP 59 (109)
T ss_dssp HHHHHHHHTCSEEEEEECSTTHHHHT-TTCSEEEECS
T ss_pred HHHHHHHCCCCeEEEEecHHHHHhhc-CCCCEEEECC
Confidence 55778888987666554333444432 3788776664
No 292
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=20.91 E-value=1.4e+02 Score=21.91 Aligned_cols=17 Identities=0% Similarity=-0.158 Sum_probs=11.9
Q ss_pred HHHHHhC-CCeEEEEeCC
Q 029484 4 LKYMGEL-GYHFEVYRND 20 (192)
Q Consensus 4 ~~~l~~~-g~~~~v~~~~ 20 (192)
++.+++. |.+++++...
T Consensus 25 ~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 25 SSIISSRNNVDISFRTPF 42 (242)
T ss_dssp HHHHHHHSCCEEEEECTT
T ss_pred HHHHHHhcCCeEEEEEcc
Confidence 4455555 9999988754
No 293
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=20.91 E-value=1.5e+02 Score=19.47 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHhCCCeEEEEeC------CCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRN------DELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~------~~~~~~~~~~~~~dglii~GG 40 (192)
|.+..+++|+++.+-.. +..+.+++. ..|+||+.+.
T Consensus 28 L~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d 69 (111)
T 2kyr_A 28 LEEAAVEAGYEVKIETQGADGIQNRLTAQDIA--EATIIIHSVA 69 (111)
T ss_dssp HHHHHHHTSSEEEEEEEETTEEESCCCHHHHH--HCSEEEEEES
T ss_pred HHHHHHHCCCeEEEEecCCCCcCCCCCHHHHH--hCCEEEEEeC
Confidence 56777889999988321 256677887 6788999865
No 294
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=20.61 E-value=1.1e+02 Score=23.60 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=19.0
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
..|+|++.+=|. ...+.+-+ .-.+|++||..|-
T Consensus 186 GA~~ivlE~vp~------~~a~~It~-~l~iP~igIGaG~ 218 (275)
T 3vav_A 186 GAQLIVLEAVPT------LVAAEVTR-ELSIPTIGIGAGA 218 (275)
T ss_dssp TCSEEEEESCCH------HHHHHHHH-HCSSCEEEESSCS
T ss_pred CCCEEEecCCCH------HHHHHHHH-hCCCCEEEEccCC
Confidence 577777765321 12233322 1259999998774
No 295
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=20.43 E-value=1.5e+02 Score=24.56 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=33.4
Q ss_pred eEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh-------HHHHHHHhCCeeeecC
Q 029484 34 GVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG-------LQCIGEAFGGKIVRSP 85 (192)
Q Consensus 34 glii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G-------~Q~l~~~~gg~v~~~~ 85 (192)
.|+|+-|..+..........+.....+++|..|++| ++-|+...||......
T Consensus 183 IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~ 241 (464)
T 4fx5_A 183 AILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIR 241 (464)
T ss_dssp EEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEES
T ss_pred EEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcC
Confidence 466666654332222333444456678999877777 6778888888877654
No 296
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.42 E-value=98 Score=19.92 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC 67 (192)
+.+.|+..|+++............+....+|.+++--. .+...+ .+.+.+++.....|++-+.
T Consensus 20 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii~ls 83 (137)
T 3cfy_A 20 YKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVIIAT 83 (137)
T ss_dssp HHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 44566777887664432111112233347887776421 122222 4556666655678887765
No 297
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=20.38 E-value=98 Score=23.13 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=25.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH------HHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~------~~~~~~~dglii~GG 40 (192)
+.+.+++.|+++.+......... .+....+||||+.+.
T Consensus 36 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 36 IQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 45678889999999876422211 122348999999875
No 298
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=20.36 E-value=1.4e+02 Score=21.41 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=24.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG 40 (192)
+.+...+.|++++.+..+ .+.++.+ .++|||||=+|
T Consensus 62 l~~~a~~~G~~l~~~QSN--~EGeLId~Ih~A~~~~dgIIINPg 103 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSD--SEAQLLDWIHQAADAAEPVILNAG 103 (172)
T ss_dssp HHHHHHHTTCEEEEEECS--CHHHHHHHHHHHHHHTCCEEEECG
T ss_pred HHHHHHHcCCEEEEEecC--CHHHHHHHHHHhhhcCcEEEECcc
Confidence 345566789999999863 2344322 15899999887
No 299
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.22 E-value=94 Score=19.93 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHHhCCC--eEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCc-chhHHHHHHhC--CCCCEEeeeH
Q 029484 3 FLKYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~--~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~-~~~~~~~~~~~--~~~PilGIC~ 68 (192)
+.+.|+..|. .+............+.. ..+|.+|+--.- +... -.+++.+++.. ...|++.+..
T Consensus 23 l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 23 VERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI--PKMNGIEFLKELRDDSSFTDIEVFVLTA 97 (143)
T ss_dssp HHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC--TTSCHHHHHHHHTTSGGGTTCEEEEEES
T ss_pred HHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC--CCCCHHHHHHHHHcCccccCCcEEEEeC
Confidence 5667788887 66655431111222332 468887775321 1122 23455555433 6788888764
No 300
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.13 E-value=61 Score=20.55 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=32.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHHHhC--CCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~~~~--~~~PilGIC 67 (192)
+.+.|++.|+++............+....+|.||+--. .+... ..+++.+++.. ...||+-+.
T Consensus 22 l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~~~ii~~~ 87 (132)
T 3lte_A 22 IERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS--MPKLDGLDVIRSLRQNKVANQPKILVVS 87 (132)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC--BTTBCHHHHHHHHHTTTCSSCCEEEEEC
T ss_pred HHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCccCCCeEEEEe
Confidence 56778889998876643211122234447887777432 12222 23455565533 344554443
Done!