Your job contains 1 sequence.
>029485
MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY
PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS
EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS
IDYDGLGPVSWW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029485
(192 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2033077 - symbol:AT1G06790 species:3702 "Arabi... 673 3.6e-66 1
ZFIN|ZDB-GENE-040718-179 - symbol:polr3h "polymerase (RNA... 280 3.7e-29 2
MGI|MGI:1926179 - symbol:Polr3h "polymerase (RNA) III (DN... 309 1.3e-27 1
RGD|1305889 - symbol:Polr3h "polymerase (RNA) III (DNA di... 309 1.3e-27 1
SGD|S000001627 - symbol:RPC25 "RNA polymerase III subunit... 262 1.7e-27 2
UNIPROTKB|F1ML03 - symbol:POLR3H "DNA-directed RNA polyme... 307 2.2e-27 1
UNIPROTKB|Q2T9X1 - symbol:POLR3H "DNA-directed RNA polyme... 305 3.5e-27 1
UNIPROTKB|Q9Y535 - symbol:POLR3H "DNA-directed RNA polyme... 303 5.7e-27 1
UNIPROTKB|F1SRD6 - symbol:POLR3H "Uncharacterized protein... 303 5.7e-27 1
WB|WBGene00014111 - symbol:rpc-25 species:6239 "Caenorhab... 303 5.7e-27 1
UNIPROTKB|E1BV29 - symbol:POLR3H "Uncharacterized protein... 301 9.4e-27 1
UNIPROTKB|E2RRG9 - symbol:POLR3H "Uncharacterized protein... 296 3.2e-26 1
FB|FBgn0036188 - symbol:CG7339 species:7227 "Drosophila m... 244 2.7e-25 2
CGD|CAL0005692 - symbol:orf19.443 species:5476 "Candida a... 279 2.0e-24 1
DICTYBASE|DDB_G0273523 - symbol:rpc25-2 "RNA polymerase I... 235 4.9e-24 2
DICTYBASE|DDB_G0273425 - symbol:rpc25-1 "RNA polymerase I... 235 4.9e-24 2
POMBASE|SPBC2G5.07c - symbol:rpc25 "DNA-directed RNA poly... 272 1.1e-23 1
ASPGD|ASPL0000045357 - symbol:AN1447 species:162425 "Emer... 231 2.5e-19 1
UNIPROTKB|F8WDV1 - symbol:POLR3H "DNA-directed RNA polyme... 177 1.3e-13 1
FB|FBgn0051155 - symbol:Rpb7 "Rpb7" species:7227 "Drosoph... 137 2.2e-09 1
WB|WBGene00021845 - symbol:rpb-7 species:6239 "Caenorhabd... 136 2.9e-09 1
UNIPROTKB|Q5E9B8 - symbol:POLR2G "DNA-directed RNA polyme... 131 9.7e-09 1
UNIPROTKB|P62487 - symbol:POLR2G "DNA-directed RNA polyme... 131 9.7e-09 1
UNIPROTKB|I3LJZ9 - symbol:POLR2G "Uncharacterized protein... 131 9.7e-09 1
MGI|MGI:1914960 - symbol:Polr2g "polymerase (RNA) II (DNA... 131 9.7e-09 1
RGD|621284 - symbol:Polr2g "polymerase (RNA) II (DNA dire... 131 9.7e-09 1
ZFIN|ZDB-GENE-030131-2808 - symbol:polr2gl "polymerase (R... 131 9.7e-09 1
SGD|S000002812 - symbol:RPB7 "RNA polymerase II subunit B... 129 1.6e-08 1
UNIPROTKB|E7ERZ2 - symbol:POLR3H "DNA-directed RNA polyme... 120 1.4e-07 1
POMBASE|SPACUNK4.06c - symbol:rpb7 "DNA-directed RNA poly... 119 9.8e-07 1
UNIPROTKB|F1PT38 - symbol:POLR2G "Uncharacterized protein... 105 6.1e-06 1
ASPGD|ASPL0000041983 - symbol:AN1521 species:162425 "Emer... 108 5.8e-05 1
TAIR|locus:2168514 - symbol:NRPB7 species:3702 "Arabidops... 107 0.00010 1
CGD|CAL0004143 - symbol:RPB7 species:5476 "Candida albica... 105 0.00018 1
UNIPROTKB|Q5A8Y7 - symbol:RPB7 "Likely RNA Pol II core co... 105 0.00018 1
>TAIR|locus:2033077 [details] [associations]
symbol:AT1G06790 species:3702 "Arabidopsis thaliana"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899
UniGene:At.26438 UniGene:At.48160 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA EMBL:AY065288
EMBL:AY142661 IPI:IPI00527075 PIR:G86202 RefSeq:NP_172164.1
ProteinModelPortal:Q9M9Y6 SMR:Q9M9Y6 IntAct:Q9M9Y6 STRING:Q9M9Y6
PaxDb:Q9M9Y6 PRIDE:Q9M9Y6 DNASU:837190 EnsemblPlants:AT1G06790.1
GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6
PhylomeDB:Q9M9Y6 ProtClustDB:CLSN2682503 ArrayExpress:Q9M9Y6
Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6
Length = 204
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 121/194 (62%), Positives = 156/194 (80%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS++EH+ +AIK L+NVFLDKV+A+LGLC+SIYDIK +EGGFV
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+T+ V R+VVFRPFVGE+IAAK KESDANGLRL+LGFF+DIYVP+ L+P P+R
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120
Query: 121 EPDPYGRYEVKWIWEFGDTK--YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
EPDPY R ++ W+WE+G+ K Y++D +IKFRV S++YPS+P E+AE +KPFAPMV+
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180
Query: 179 GSIDYDGLGPVSWW 192
G++D DGLGPVSWW
Sbjct: 181 GNMDDDGLGPVSWW 194
>ZFIN|ZDB-GENE-040718-179 [details] [associations]
symbol:polr3h "polymerase (RNA) III (DNA directed)
polypeptide H" species:7955 "Danio rerio" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
ZFIN:ZDB-GENE-040718-179 GO:GO:0003677 GO:GO:0006351
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:BC076336
IPI:IPI00495469 RefSeq:NP_001002476.1 UniGene:Dr.78164
ProteinModelPortal:Q6DGK6 STRING:Q6DGK6 GeneID:436749
KEGG:dre:436749 InParanoid:Q6DGK6 NextBio:20831187
ArrayExpress:Q6DGK6 Uniprot:Q6DGK6
Length = 214
Score = 280 (103.6 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 60/157 (38%), Positives = 88/157 (56%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T NEA+ EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMRDTVRIPPWSFQRPLNEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K A G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILLGKIKGCSAEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRV 153
+ E W+WE+ G +D +EI+FRV
Sbjct: 120 ----FDEAEQVWVWEYETDEGTHDLYMDQGEEIRFRV 152
Score = 59 (25.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 159 PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
P E A K +P + GS+ GLG +SWW
Sbjct: 180 PPAGAEDAAQQKE-SPYTLIGSVSEPGLGLLSWW 212
>MGI|MGI:1926179 [details] [associations]
symbol:Polr3h "polymerase (RNA) III (DNA directed)
polypeptide H" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISO] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 MGI:MGI:1926179
GO:GO:0003677 GO:GO:0045087 GO:GO:0051607 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
EMBL:AK019868 EMBL:BC010793 IPI:IPI00187529 RefSeq:NP_084505.2
UniGene:Mm.215115 ProteinModelPortal:Q9D2C6 SMR:Q9D2C6
STRING:Q9D2C6 PaxDb:Q9D2C6 PRIDE:Q9D2C6 Ensembl:ENSMUST00000023113
GeneID:78929 KEGG:mmu:78929 UCSC:uc007wxr.1
GeneTree:ENSGT00390000004383 InParanoid:Q9D2C6 ChiTaRS:POLR3H
NextBio:349786 Bgee:Q9D2C6 CleanEx:MM_POLR3H Genevestigator:Q9D2C6
GermOnline:ENSMUSG00000022476 Uniprot:Q9D2C6
Length = 204
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 75/206 (36%), Positives = 110/206 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGS- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P E A S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>RGD|1305889 [details] [associations]
symbol:Polr3h "polymerase (RNA) III (DNA directed) polypeptide
H" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA;ISO] [GO:0005813 "centrosome"
evidence=IEA;ISO] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=ISO] [GO:0006383 "transcription from
RNA polymerase III promoter" evidence=IEA;ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 RGD:1305889 GO:GO:0003677
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 EMBL:CH473950
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
SUPFAM:SSF88798 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
KO:K03022 OrthoDB:EOG434W70 InterPro:IPR013238 Pfam:PF08292
TIGRFAMs:TIGR00448 OMA:NVGLCIA GeneTree:ENSGT00390000004383
EMBL:BC167088 IPI:IPI00210015 RefSeq:NP_001120767.1
UniGene:Rn.13037 SMR:B2RZB0 STRING:B2RZB0
Ensembl:ENSRNOT00000005943 GeneID:300088 KEGG:rno:300088
UCSC:RGD:1305889 NextBio:646311 Genevestigator:B2RZB0
Uniprot:B2RZB0
Length = 204
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 75/206 (36%), Positives = 110/206 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGS- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P E A S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>SGD|S000001627 [details] [associations]
symbol:RPC25 "RNA polymerase III subunit C25" species:4932
"Saccharomyces cerevisiae" [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 SGD:S000001627 GO:GO:0003677
EMBL:BK006944 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 EMBL:Z25464 Reactome:REACT_87991
GO:GO:0042797 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238
Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 OrthoDB:EOG4NCQP8 EMBL:U11048
EMBL:Z28144 PIR:S37973 RefSeq:NP_012778.1 PDB:2CKZ PDBsum:2CKZ
ProteinModelPortal:P35718 SMR:P35718 DIP:DIP-1414N IntAct:P35718
MINT:MINT-399757 STRING:P35718 PaxDb:P35718 EnsemblFungi:YKL144C
GeneID:853713 KEGG:sce:YKL144C CYGD:YKL144c
EvolutionaryTrace:P35718 NextBio:974722 Genevestigator:P35718
GermOnline:YKL144C Uniprot:P35718
Length = 212
Score = 262 (97.3 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 59/155 (38%), Positives = 88/155 (56%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++SL G F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRV 153
P+ E WIW + TK D ++I+FR+
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRI 150
Score = 61 (26.5 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 164 EQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
E + KP A ++ GS DG+G VSWW
Sbjct: 184 ETPQNEKPPAYALL-GSCQTDGMGLVSWW 211
>UNIPROTKB|F1ML03 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9913 "Bos taurus" [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798 IPI:IPI00711860
UniGene:Bt.55567 InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
OMA:NVGLCIA GeneTree:ENSGT00390000004383 EMBL:DAAA02014732
Ensembl:ENSBTAT00000006987 Uniprot:F1ML03
Length = 204
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 74/206 (35%), Positives = 110/206 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGS- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P E A S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>UNIPROTKB|Q2T9X1 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BC111227
IPI:IPI00711860 RefSeq:NP_001070430.1 UniGene:Bt.55567
ProteinModelPortal:Q2T9X1 STRING:Q2T9X1 GeneID:767843
KEGG:bta:767843 CTD:171568 HOGENOM:HOG000157370 HOVERGEN:HBG044510
InParanoid:Q2T9X1 KO:K03022 OrthoDB:EOG434W70 NextBio:20918210
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 Uniprot:Q2T9X1
Length = 204
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 74/206 (35%), Positives = 110/206 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGS- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P E A S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>UNIPROTKB|Q9Y535 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IDA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=IDA;TAS] [GO:0006385 "transcription elongation from RNA
polymerase III promoter" evidence=TAS] [GO:0006386 "termination of
RNA polymerase III transcription" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] Reactome:REACT_71 InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0005813 GO:GO:0003677
EMBL:CH471095 GO:GO:0045087 GO:GO:0051607 EMBL:AL023553
InterPro:IPR012340 SUPFAM:SSF50249 Reactome:REACT_1788
GO:GO:0005666 GO:GO:0003899 GO:GO:0006386 GO:GO:0006385
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568
HOGENOM:HOG000157370 HOVERGEN:HBG044510 KO:K03022 OrthoDB:EOG434W70
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 EMBL:AY092087
EMBL:AB051452 EMBL:CR456459 EMBL:BC017248 EMBL:BC088367
IPI:IPI00215871 IPI:IPI00289667 RefSeq:NP_001018060.1
RefSeq:NP_001018062.1 RefSeq:NP_612211.1 UniGene:Hs.712617
ProteinModelPortal:Q9Y535 SMR:Q9Y535 IntAct:Q9Y535 STRING:Q9Y535
DMDM:29428071 PaxDb:Q9Y535 PRIDE:Q9Y535 DNASU:171568
Ensembl:ENST00000337566 Ensembl:ENST00000355209
Ensembl:ENST00000396504 Ensembl:ENST00000407461 GeneID:171568
KEGG:hsa:171568 UCSC:uc003baf.3 UCSC:uc003bai.2
GeneCards:GC22M041921 HGNC:HGNC:30349 HPA:HPA046787
neXtProt:NX_Q9Y535 PharmGKB:PA134994174 InParanoid:Q9Y535
OMA:NVGLCIA PhylomeDB:Q9Y535 GenomeRNAi:171568 NextBio:89296
ArrayExpress:Q9Y535 Bgee:Q9Y535 CleanEx:HS_POLR3H
Genevestigator:Q9Y535 GermOnline:ENSG00000100413 Uniprot:Q9Y535
Length = 204
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 73/206 (35%), Positives = 108/206 (52%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>UNIPROTKB|F1SRD6 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:CU633382 RefSeq:XP_001929168.1
UniGene:Ssc.54915 Ensembl:ENSSSCT00000000069 GeneID:100157033
KEGG:ssc:100157033 Uniprot:F1SRD6
Length = 204
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 73/206 (35%), Positives = 110/206 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGSK 170
+ E W+WE+ G +D +E++FRV+ ++ P+ P E A S+
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 171 PF----APMVINGSIDYDGLGPVSWW 192
AP + GSI GLG +SWW
Sbjct: 176 ELPRKEAPYTLVGSICEPGLGLLSWW 201
>WB|WBGene00014111 [details] [associations]
symbol:rpc-25 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR005576
Pfam:PF03876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0006351
GO:GO:0040035 InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967
SMART:SM00316 GO:GO:0003899 EMBL:Z70783 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 PIR:T28049 RefSeq:NP_505625.1
ProteinModelPortal:Q23645 SMR:Q23645 STRING:Q23645 PaxDb:Q23645
EnsemblMetazoa:ZK856.10 GeneID:179418 KEGG:cel:CELE_ZK856.10
UCSC:ZK856.10 CTD:179418 WormBase:ZK856.10 InParanoid:Q23645
NextBio:905302 Uniprot:Q23645
Length = 239
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 74/199 (37%), Positives = 102/199 (51%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS + T IK L +K+I +LGLCI +YDI EI ++
Sbjct: 1 MFILSLLHDTVAIQPHQLSSDQQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG VKFR++VFRPFV E+I AK+ S GL L++ FFEDI+VP+ LP P
Sbjct: 61 PGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGLCLTIQFFEDIFVPAEKLPEPHVF 120
Query: 121 EPDPYGRYEVKWIWEF----GD--TKYVIDGLDEIKFRVLSVNYPSIPIEQA-EGSKPFA 173
E + G+ W WE+ G+ K +D ++FRV + + + E E K
Sbjct: 121 EEE--GQV---WYWEYAQEDGEPPAKLYMDPGKIVRFRVTEIIFKDLKPELTHEERKTEK 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
M I G++ GLG + WW
Sbjct: 176 SMEIKGTMASTGLGCIGWW 194
>UNIPROTKB|E1BV29 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 InterPro:IPR013238
Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AADN02006068 IPI:IPI00580368
Ensembl:ENSGALT00000019488 Uniprot:E1BV29
Length = 209
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 74/209 (35%), Positives = 108/209 (51%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T NE+I EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K +G+ +S+GFF+DI +P L P+
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILVGEIKSCSQDGVHVSIGFFDDIVIPPESLQQPALG 120
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
E W+WE+ G +D +EI+FRV+ + P+ P AE S
Sbjct: 121 VASDEA--EQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFVDTSPTGP-SSAEASTSN 177
Query: 170 ------KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 178 ATEEVQKKEAPYTLVGSISEPGLGLLSWW 206
>UNIPROTKB|E2RRG9 [details] [associations]
symbol:POLR3H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006383 "transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004519
InterPro:IPR005576 Pfam:PF03876 GO:GO:0003677 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:171568 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AAEX03007296 RefSeq:XP_849136.1
ProteinModelPortal:E2RRG9 Ensembl:ENSCAFT00000001618 GeneID:607850
KEGG:cfa:607850 NextBio:20893547 Uniprot:E2RRG9
Length = 204
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 72/206 (34%), Positives = 109/206 (52%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ ++GLCI ++DI +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGRIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIE-QAEGS-- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P +A S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>FB|FBgn0036188 [details] [associations]
symbol:CG7339 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR005576 Pfam:PF03876 EMBL:AE014296 GO:GO:0022008
GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 KO:K03022
InterPro:IPR013238 Pfam:PF08292 OMA:NVGLCIA
GeneTree:ENSGT00390000004383 EMBL:AY118479 RefSeq:NP_648490.1
UniGene:Dm.11797 SMR:Q9VTL6 IntAct:Q9VTL6 STRING:Q9VTL6
EnsemblMetazoa:FBtr0076107 EnsemblMetazoa:FBtr0331530 GeneID:39310
KEGG:dme:Dmel_CG7339 UCSC:CG7339-RA FlyBase:FBgn0036188
InParanoid:Q9VTL6 OrthoDB:EOG4F4QT4 GenomeRNAi:39310 NextBio:812992
Uniprot:Q9VTL6
Length = 240
Score = 244 (91.0 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 54/158 (34%), Positives = 86/158 (54%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +A++ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG +I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF---GDTKY--VIDGLDEIKFRV 153
+ E W+WE+ K+ +D + IKFRV
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRV 153
Score = 58 (25.5 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 160 SIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
S + A + P I G+I+ GLG +SWW
Sbjct: 180 SAAVASATSQEVKTPYRIIGAINESGLGVLSWW 212
>CGD|CAL0005692 [details] [associations]
symbol:orf19.443 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006384 "transcription initiation
from RNA polymerase III promoter" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876 CGD:CAL0005692
GO:GO:0003677 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0003899 EMBL:AACQ01000078 EMBL:AACQ01000077 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448
RefSeq:XP_715878.1 RefSeq:XP_715928.1 ProteinModelPortal:Q5A298
SMR:Q5A298 STRING:Q5A298 GeneID:3642414 GeneID:3642463
KEGG:cal:CaO19.443 KEGG:cal:CaO19.8073 Uniprot:Q5A298
Length = 195
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+I +I EL + +K+IANLGL I+I+DI +I+ G +
Sbjct: 1 MFILSEISDLIRIPPSAFNVPIQHSISDELNKKYANKIIANLGLVITIWDILDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR +V++PF GEI+ + E A G+++ + FF++I++P L
Sbjct: 61 PGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKGIKVRMEFFDEIWIPKDFL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKP---FA 173
E Y E WI+ + + ID ++I+FRV N+ P + EQ E K
Sbjct: 116 ENCKYSESEQAWIYLLDENELFIDVNEKIRFRVEEENFYNVKPKLEDEQTEEEKKATTLP 175
Query: 174 PMVINGSI-DYDGLGPVSWW 192
P I S DY G+G VSWW
Sbjct: 176 PYTITASCQDY-GMGCVSWW 194
>DICTYBASE|DDB_G0273523 [details] [associations]
symbol:rpc25-2 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 235 (87.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 51/162 (31%), Positives = 87/162 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE + I+ E+E + KV+ N GL +++YDI +V+
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V+FR+VVF+PF GE++ +K+S +++SLGFF +IY+ LP+PS
Sbjct: 60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSN- 118
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSI 161
Y + E W WE+ + + + ++F++ V + P I
Sbjct: 119 ----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEI 156
Score = 55 (24.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 173 APMVINGSIDYDGLGPVSWW 192
+P+++ S+ GLG VSWW
Sbjct: 195 SPLILKVSMREAGLGMVSWW 214
>DICTYBASE|DDB_G0273425 [details] [associations]
symbol:rpc25-1 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273523
dictyBase:DDB_G0273425 GenomeReviews:CM000151_GR InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899
eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384
InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1
RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:Q557J3
EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862
GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425
KEGG:ddi:DDB_G0273523 OMA:WEWNENQ ProtClustDB:CLSZ2729227
Uniprot:Q557J3
Length = 252
Score = 235 (87.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 51/162 (31%), Positives = 87/162 (53%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE + I+ E+E + KV+ N GL +++YDI +V+
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V+FR+VVF+PF GE++ +K+S +++SLGFF +IY+ LP+PS
Sbjct: 60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSN- 118
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSI 161
Y + E W WE+ + + + ++F++ V + P I
Sbjct: 119 ----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEI 156
Score = 55 (24.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 173 APMVINGSIDYDGLGPVSWW 192
+P+++ S+ GLG VSWW
Sbjct: 195 SPLILKVSMREAGLGMVSWW 214
>POMBASE|SPBC2G5.07c [details] [associations]
symbol:rpc25 "DNA-directed RNA polymerase III complex
subunit Rpc25" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=IMP] InterPro:IPR004519 InterPro:IPR005576 Pfam:PF03876
PomBase:SPBC2G5.07c GO:GO:0005829 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120
SUPFAM:SSF88798 GO:GO:0006384 HOGENOM:HOG000157370 KO:K03022
InterPro:IPR013238 Pfam:PF08292 TIGRFAMs:TIGR00448 OMA:NVGLCIA
EMBL:DQ156221 PIR:T40164 RefSeq:NP_596068.1 PDB:3AYH PDBsum:3AYH
ProteinModelPortal:O94285 STRING:O94285 EnsemblFungi:SPBC2G5.07c.1
GeneID:2540510 KEGG:spo:SPBC2G5.07c OrthoDB:EOG4NCQP8
NextBio:20801637 Uniprot:O94285
Length = 203
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 66/207 (31%), Positives = 104/207 (50%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+ EA+ E+ + +KVI N+GL I +YD +I G +
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G+S V FRL++FRPF GE++ K+K G+R+++ FF+DI++P +L P
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120
Query: 121 EPDPYGRYEVKWIWEF-GD-----TKYVIDGLDEIKFRVLSVNYPSI-P--------IEQ 165
PD E W+W+ G+ T+ D +EI+F++ S ++ I P I
Sbjct: 121 RPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITG 175
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
E + +P + S DGLG +WW
Sbjct: 176 TEALESVSPYTLIASCSRDGLGIPAWW 202
>ASPGD|ASPL0000045357 [details] [associations]
symbol:AN1447 species:162425 "Emericella nidulans"
[GO:0006384 "transcription initiation from RNA polymerase III
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] InterPro:IPR005576 Pfam:PF03876 EMBL:BN001307
GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACD01000022
GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798
HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238 Pfam:PF08292
OMA:NVGLCIA OrthoDB:EOG4NCQP8 RefSeq:XP_659051.1
ProteinModelPortal:Q5BDD3 STRING:Q5BDD3
EnsemblFungi:CADANIAT00008060 GeneID:2875482 KEGG:ani:AN1447.2
Uniprot:Q5BDD3
Length = 208
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 53/153 (34%), Positives = 78/153 (50%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I + AI+ + + +KVI +GLCI YD+ E G +
Sbjct: 1 MFILTTISDLIQISPEDFSKYSSVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEI+ K+ + NG+++ + FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFRGEIVLGKISSATENGIKIGVEFFNDILVPPDLLLDGARF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV 153
+ Y + WIWE + + D + ++FRV
Sbjct: 121 D---Y--QDQVWIWENEEGTFYFDVGEVVRFRV 148
>UNIPROTKB|F8WDV1 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR005576 Pfam:PF03876
GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120
SUPFAM:SSF88798 HGNC:HGNC:30349 IPI:IPI00604415
ProteinModelPortal:F8WDV1 SMR:F8WDV1 PRIDE:F8WDV1
Ensembl:ENST00000431534 ArrayExpress:F8WDV1 Bgee:F8WDV1
Uniprot:F8WDV1
Length = 123
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/102 (37%), Positives = 57/102 (55%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GAS V FR VVF PF+ EI+ K+K G+ + G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHGNSG 102
>FB|FBgn0051155 [details] [associations]
symbol:Rpb7 "Rpb7" species:7227 "Drosophila melanogaster"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS;IPI] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:AE014297
GO:GO:0003723 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 eggNOG:COG1095 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
EMBL:BT023312 EMBL:BT029405 RefSeq:NP_731983.1 UniGene:Dm.35954
UniGene:Dm.4143 SMR:Q9VFB5 STRING:Q9VFB5 EnsemblMetazoa:FBtr0083137
GeneID:261631 KEGG:dme:Dmel_CG31155 UCSC:CG31155-RA CTD:261631
FlyBase:FBgn0051155 InParanoid:Q9VFB5 OrthoDB:EOG46Q58R
GenomeRNAi:261631 NextBio:843782 Uniprot:Q9VFB5
Length = 173
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 38/154 (24%), Positives = 71/154 (46%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +E E +K +L + G I++ I +I G +
Sbjct: 1 MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A +K+ + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLS-CFISHHSIPADMQF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
P+ G ++ D VI G D+I+ +++
Sbjct: 120 CPN--GNPPC---YKSKDEDVVISGEDKIRLKIV 148
>WB|WBGene00021845 [details] [associations]
symbol:rpb-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004601 "peroxidase activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0043652 "engulfment of apoptotic
cell" evidence=IMP] InterPro:IPR003029 InterPro:IPR005576
Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043652 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 GO:GO:0001703 KO:K03015 eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 GeneTree:ENSGT00390000008975 EMBL:FO081636
RefSeq:NP_491093.1 HSSP:Q57840 ProteinModelPortal:Q9N3C9 SMR:Q9N3C9
STRING:Q9N3C9 PaxDb:Q9N3C9 EnsemblMetazoa:Y54E10BR.6 GeneID:171877
KEGG:cel:CELE_Y54E10BR.6 UCSC:Y54E10BR.6 CTD:171877
WormBase:Y54E10BR.6 InParanoid:Q9N3C9 NextBio:873067 Uniprot:Q9N3C9
Length = 197
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 39/154 (25%), Positives = 69/154 (44%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++H NE IK++L N G I++ I I G +
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF G+++ + + + G+ +G ++ H +P P
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLS-CFISRHCIP-PDM- 140
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP K ++ D VI DEI+ +++
Sbjct: 141 EFDPNSE---KPCYKTNDEANVIRNDDEIRVKLI 171
>UNIPROTKB|Q5E9B8 [details] [associations]
symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 GO:GO:0003723
GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201
OMA:TRVDAND Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT021002
IPI:IPI00688959 RefSeq:NP_001015633.1 UniGene:Bt.9092
ProteinModelPortal:Q5E9B8 SMR:Q5E9B8 STRING:Q5E9B8
Ensembl:ENSBTAT00000012481 GeneID:526320 KEGG:bta:526320 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 InParanoid:Q5E9B8
OrthoDB:EOG451DRZ NextBio:20874346 Uniprot:Q5E9B8
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPS--EM 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP ++ D VI DEI+ +++
Sbjct: 118 EFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148
>UNIPROTKB|P62487 [details] [associations]
symbol:POLR2G "DNA-directed RNA polymerase II subunit RPB7"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 Reactome:REACT_116125
GO:GO:0006915 GO:GO:0016032 EMBL:CH471076 Reactome:REACT_1675
GO:GO:0006468 GO:GO:0003723 GO:GO:0006368 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0005665 PDB:2C35 PDBsum:2C35 eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 CTD:5436 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:U20659 EMBL:U52427 EMBL:AK312131 EMBL:BC112162 EMBL:BC112164
IPI:IPI00218895 RefSeq:NP_002687.1 UniGene:Hs.14839
ProteinModelPortal:P62487 SMR:P62487 DIP:DIP-32663N IntAct:P62487
MINT:MINT-1033626 STRING:P62487 PhosphoSite:P62487 DMDM:50403601
PaxDb:P62487 PeptideAtlas:P62487 PRIDE:P62487
Ensembl:ENST00000301788 GeneID:5436 KEGG:hsa:5436 UCSC:uc001nva.3
GeneCards:GC11P062529 HGNC:HGNC:9194 MIM:602013 neXtProt:NX_P62487
PharmGKB:PA33514 InParanoid:P62487 PhylomeDB:P62487
EvolutionaryTrace:P62487 GenomeRNAi:5436 NextBio:21033
ArrayExpress:P62487 Bgee:P62487 CleanEx:HS_POLR2G
Genevestigator:P62487 GermOnline:ENSG00000168002 Uniprot:P62487
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPS--EM 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP ++ D VI DEI+ +++
Sbjct: 118 EFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148
>UNIPROTKB|I3LJZ9 [details] [associations]
symbol:POLR2G "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
GO:GO:0003723 GO:GO:0004672 GO:GO:0006366 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
EMBL:FP312617 RefSeq:XP_003353863.1 ProteinModelPortal:I3LJZ9
SMR:I3LJZ9 Ensembl:ENSSSCT00000022560 GeneID:100620235
KEGG:ssc:100620235 Uniprot:I3LJZ9
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPS--EM 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP ++ D VI DEI+ +++
Sbjct: 118 EFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148
>MGI|MGI:1914960 [details] [associations]
symbol:Polr2g "polymerase (RNA) II (DNA directed)
polypeptide G" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
MGI:MGI:1914960 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:AK010687 EMBL:AK011627 EMBL:AK013134 EMBL:AK017473
EMBL:BC005580 EMBL:BC055278 IPI:IPI00263106 RefSeq:NP_080605.1
UniGene:Mm.22117 ProteinModelPortal:P62488 SMR:P62488 STRING:P62488
PhosphoSite:P62488 REPRODUCTION-2DPAGE:P62488 PaxDb:P62488
PRIDE:P62488 Ensembl:ENSMUST00000096261 GeneID:67710 KEGG:mmu:67710
UCSC:uc008gna.1 InParanoid:P62488 NextBio:325333 Bgee:P62488
CleanEx:MM_POLR2G Genevestigator:P62488
GermOnline:ENSMUSG00000071662 Uniprot:P62488
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPS--EM 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP ++ D VI DEI+ +++
Sbjct: 118 EFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148
>RGD|621284 [details] [associations]
symbol:Polr2g "polymerase (RNA) II (DNA directed) polypeptide G"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=ISO;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISO;ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=IEP] InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575
Pfam:PF03876 RGD:621284 GO:GO:0006915 GO:GO:0003723 GO:GO:0004672
GO:GO:0006366 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 CTD:5436
GeneTree:ENSGT00390000008975 HOVERGEN:HBG055233 OrthoDB:EOG451DRZ
EMBL:Z71925 EMBL:BC060550 EMBL:BC060595 IPI:IPI00326378
RefSeq:NP_446400.1 UniGene:Rn.106248 ProteinModelPortal:P62489
SMR:P62489 STRING:P62489 PRIDE:P62489 Ensembl:ENSRNOT00000026313
GeneID:117017 KEGG:rno:117017 UCSC:RGD:621284 InParanoid:P62489
NextBio:619759 Genevestigator:P62489 GermOnline:ENSRNOG00000019439
Uniprot:P62489
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPS--EM 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP ++ D VI DEI+ +++
Sbjct: 118 EFDPNSNPPC---YKTMDEDIVIQQDDEIRLKIV 148
>ZFIN|ZDB-GENE-030131-2808 [details] [associations]
symbol:polr2gl "polymerase (RNA) II (DNA directed)
polypeptide G-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
ZFIN:ZDB-GENE-030131-2808 GO:GO:0006468 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 eggNOG:COG1095 HOGENOM:HOG000158201 OMA:TRVDAND
Gene3D:3.30.1490.120 SUPFAM:SSF88798 GeneTree:ENSGT00390000008975
HOVERGEN:HBG055233 OrthoDB:EOG451DRZ EMBL:BC045299 IPI:IPI00493928
RefSeq:NP_955963.1 UniGene:Dr.2883 ProteinModelPortal:Q7ZW41
SMR:Q7ZW41 STRING:Q7ZW41 PRIDE:Q7ZW41 Ensembl:ENSDART00000078557
GeneID:324088 KEGG:dre:324088 CTD:324088 InParanoid:Q7ZW41
NextBio:20808583 Bgee:Q7ZW41 Uniprot:Q7ZW41
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPS--EM 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
E DP ++ D VI DEI+ +++
Sbjct: 118 EFDPNSNPPC---YKTVDEDVVIQQDDEIRLKIV 148
>SGD|S000002812 [details] [associations]
symbol:RPB7 "RNA polymerase II subunit B16" species:4932
"Saccharomyces cerevisiae" [GO:0003727 "single-stranded RNA
binding" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045948 "positive regulation of
translational initiation" evidence=IMP] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IGI] [GO:0003697
"single-stranded DNA binding" evidence=IMP;IDA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
[GO:0000291 "nuclear-transcribed mRNA catabolic process,
exonucleolytic" evidence=IGI] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IDA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 SGD:S000002812
GO:GO:0003727 EMBL:BK006938 GO:GO:0003697 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
EMBL:U32274 GO:GO:0045948 GO:GO:0060213 InterPro:IPR022967
SMART:SM00316 GO:GO:0003899 GO:GO:0000291 RefSeq:NP_010692.3
GeneID:852013 KEGG:sce:YDR404C KO:K03015 GO:GO:0005665 KO:K00601
RefSeq:NP_010696.3 GeneID:852017 KEGG:sce:YDR408C PDB:1NT9 PDB:1PQV
PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2R7Z PDB:2R92 PDB:2R93
PDB:2VUM PDB:3FKI PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3PO2 PDB:3PO3
PDB:3QT1 PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G
PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR
PDB:4BBS PDBsum:1NT9 PDBsum:1PQV PDBsum:1WCM PDBsum:1Y1V
PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:3FKI PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS PDB:1Y14 PDBsum:1Y14 eggNOG:COG1095
HOGENOM:HOG000158201 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GeneTree:ENSGT00390000008975 OMA:HAIGSIK OrthoDB:EOG4JT3FQ
EMBL:S59775 PIR:S30140 ProteinModelPortal:P34087 SMR:P34087
DIP:DIP-725N IntAct:P34087 MINT:MINT-539630 STRING:P34087
PaxDb:P34087 PeptideAtlas:P34087 EnsemblFungi:YDR404C CYGD:YDR404c
EvolutionaryTrace:P34087 NextBio:970216 Genevestigator:P34087
GermOnline:YDR404C Uniprot:P34087
Length = 171
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 44 LCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF 103
LC+ YD +I+ G + P +G++ VK+R VVF+PF GE++ + +G + +G
Sbjct: 46 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 105
Query: 104 FEDIYVPSHLLP 115
+ ++V HL+P
Sbjct: 106 MK-VFVTKHLMP 116
>UNIPROTKB|E7ERZ2 [details] [associations]
symbol:POLR3H "DNA-directed RNA polymerase III subunit
RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR005576 Pfam:PF03876
GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120
SUPFAM:SSF88798 HGNC:HGNC:30349 IPI:IPI01020892
ProteinModelPortal:E7ERZ2 SMR:E7ERZ2 Ensembl:ENST00000442616
ArrayExpress:E7ERZ2 Bgee:E7ERZ2 Uniprot:E7ERZ2
Length = 70
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T N++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHT 69
PG+GAS HT
Sbjct: 61 PGDGAS-HT 68
>POMBASE|SPACUNK4.06c [details] [associations]
symbol:rpb7 "DNA-directed RNA polymerase complex II
subunit Rpb7" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=TAS] [GO:0016591 "DNA-directed
RNA polymerase II, holoenzyme" evidence=IC] [GO:0031123 "RNA 3'-end
processing" evidence=IPI] [GO:0097394 "telomeric RNA transcription
from RNA pol II promoter" evidence=IMP] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IDA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PomBase:SPACUNK4.06c
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006367
GO:GO:0016591 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 GO:GO:0031123 PDB:3H0G PDBsum:3H0G eggNOG:COG1095
HOGENOM:HOG000158201 OMA:TRVDAND Gene3D:3.30.1490.120
SUPFAM:SSF88798 EMBL:D89594 EMBL:D86554 EMBL:AF027821 EMBL:AF055916
PIR:T39254 RefSeq:XP_001713072.1 ProteinModelPortal:O14459
IntAct:O14459 MINT:MINT-1213963 STRING:O14459
EnsemblFungi:SPACUNK4.06c.1 GeneID:2542097 KEGG:spo:SPACUNK4.06c
OrthoDB:EOG4JT3FQ EvolutionaryTrace:O14459 NextBio:20803169
GO:GO:0097394 Uniprot:O14459
Length = 172
Score = 119 (46.9 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 44 LCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF 103
+C+ + +I+ G V PG+G + VK+R V++RPF GE++ A + + G ++G
Sbjct: 47 ICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGP 106
Query: 104 FEDIYVPSHLLPSPSRSEP 122
+++V SHL+P + +P
Sbjct: 107 L-NVFVSSHLVPPDMKFDP 124
>UNIPROTKB|F1PT38 [details] [associations]
symbol:POLR2G "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR005576 Pfam:PF03876 GO:GO:0006351
GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798
GeneTree:ENSGT00390000008975 EMBL:AAEX03011662
Ensembl:ENSCAFT00000024524 Uniprot:F1PT38
Length = 118
Score = 105 (42.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 1 MFYLSKIEHTXXXXXXXXXXXXNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAA 87
PG G + VK++ +VFRPF GE++ A
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDA 87
>ASPGD|ASPL0000041983 [details] [associations]
symbol:AN1521 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0031123 "RNA 3'-end
processing" evidence=IEA] [GO:0097394 "telomeric RNA transcription
from RNA pol II promoter" evidence=IEA] [GO:0000291
"nuclear-transcribed mRNA catabolic process, exonucleolytic"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 EMBL:BN001307
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0003899
KO:K03015 eggNOG:COG1095 HOGENOM:HOG000158201 Gene3D:3.30.1490.120
SUPFAM:SSF88798 OMA:HAIGSIK OrthoDB:EOG4JT3FQ EMBL:AACD01000024
RefSeq:XP_659125.1 STRING:Q5BD59 EnsemblFungi:CADANIAT00008149
GeneID:2875079 KEGG:ani:AN1521.2 Uniprot:Q5BD59
Length = 169
Score = 108 (43.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V PG G + +T+K+R ++++PF GE + A + G+ G
Sbjct: 45 ICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKPTGIFTLAGPLS 104
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS R EP+
Sbjct: 105 -VFIARKNIPSDIRWEPN 121
>TAIR|locus:2168514 [details] [associations]
symbol:NRPB7 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR003029 InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB016890
InterPro:IPR022967 SMART:SM00316 GO:GO:0003899 KO:K03015
GO:GO:0005665 EMBL:M90505 EMBL:BT005667 IPI:IPI00518175 PIR:A44457
RefSeq:NP_200726.1 UniGene:At.29242 ProteinModelPortal:P38421
SMR:P38421 STRING:P38421 PaxDb:P38421 PRIDE:P38421
EnsemblPlants:AT5G59180.1 GeneID:836036 KEGG:ath:AT5G59180
TAIR:At5g59180 eggNOG:COG1095 HOGENOM:HOG000158201
InParanoid:P38421 OMA:TRVDAND PhylomeDB:P38421
ProtClustDB:CLSN2686299 Genevestigator:P38421 GermOnline:AT5G59180
Gene3D:3.30.1490.120 SUPFAM:SSF88798 Uniprot:P38421
Length = 176
Score = 107 (42.7 bits), Expect = 0.00010, P = 0.00010
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 43 GLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G ++I I I G + G G T VK++ VVFRPF GEI+ A + + G G
Sbjct: 43 GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAG 102
Query: 103 FFEDIYVPSHLLP 115
+ I+V HL+P
Sbjct: 103 PVQ-IFVSKHLIP 114
>CGD|CAL0004143 [details] [associations]
symbol:RPB7 species:5476 "Candida albicans" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IGI;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IGI;ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IGI;ISS] [GO:0042493 "response to drug"
evidence=IMP] [GO:0005829 "cytosol" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0031123 "RNA
3'-end processing" evidence=IEA] [GO:0000291 "nuclear-transcribed
mRNA catabolic process, exonucleolytic" evidence=IEA] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
Length = 173
Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 43 GLCISIYDIKEIE-G-GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS 100
G + + D I+ G G + P G + VK+R VV++PF GE++ A + + G
Sbjct: 43 GYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFAD 102
Query: 101 LGFFEDIYVPSHLLPSPSRSEP 122
+G ++V +HL+PS + P
Sbjct: 103 VGPLS-VFVSTHLIPSDMKFNP 123
>UNIPROTKB|Q5A8Y7 [details] [associations]
symbol:RPB7 "Likely RNA Pol II core complex subunit"
species:237561 "Candida albicans SC5314" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IGI] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IGI] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0042493 "response to drug" evidence=IMP] InterPro:IPR003029
InterPro:IPR005576 Pfam:PF00575 Pfam:PF03876 PROSITE:PS50126
CGD:CAL0004143 GO:GO:0042493 GO:GO:0003723 GO:GO:0006366
Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AACQ01000045
EMBL:AACQ01000042 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0003899 KO:K03015 GO:GO:0005665 eggNOG:COG1095
Gene3D:3.30.1490.120 SUPFAM:SSF88798 RefSeq:XP_718170.1
RefSeq:XP_718437.1 ProteinModelPortal:Q5A8Y7 SMR:Q5A8Y7
STRING:Q5A8Y7 GeneID:3639930 GeneID:3640221 KEGG:cal:CaO19.10855
KEGG:cal:CaO19.3347 Uniprot:Q5A8Y7
Length = 173
Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 43 GLCISIYDIKEIE-G-GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS 100
G + + D I+ G G + P G + VK+R VV++PF GE++ A + + G
Sbjct: 43 GYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFAD 102
Query: 101 LGFFEDIYVPSHLLPSPSRSEP 122
+G ++V +HL+PS + P
Sbjct: 103 VGPLS-VFVSTHLIPSDMKFNP 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.142 0.438 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 180 0.00092 109 3 11 22 0.44 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 580 (62 KB)
Total size of DFA: 159 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.34u 0.10s 16.44t Elapsed: 00:00:00
Total cpu time: 16.34u 0.10s 16.44t Elapsed: 00:00:00
Start: Fri May 10 23:11:42 2013 End: Fri May 10 23:11:42 2013