BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029485
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens
GN=POLR3H PE=1 SV=1
Length = 204
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus
GN=Polr3h PE=2 SV=2
Length = 204
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus
GN=POLR3H PE=2 SV=1
Length = 204
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
SV=1
Length = 212
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPM-------VINGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1
Length = 203
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+ + + P P EA+ E+ + +KVI N+GL I +YD +I G +
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G+S V FRL++FRPF GE++ K+K G+R+++ FF+DI++P +L P
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120
Query: 121 EPDPYGRYEVKWIWEF------GDTKYVIDGLDEIKFRVLSVNYPSI---------PIEQ 165
PD E W+W+ T+ D +EI+F++ S ++ I I
Sbjct: 121 RPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITG 175
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
E + +P + S DGLG +WW
Sbjct: 176 TEALESVSPYTLIASCSRDGLGIPAWW 202
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 34/220 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE +R+ P + + I+ E+E + KV+ N GL +++YDI +V+
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V+FR+VVF+PF GE++ +K+S +++SLGFF +IY+ LP+PS
Sbjct: 60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSN- 118
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY--------PSIPIEQAEGSKPF 172
Y + E W WE+ + + + ++F++ V + PS E +
Sbjct: 119 ----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSY 174
Query: 173 A--------------------PMVINGSIDYDGLGPVSWW 192
+ P+++ S+ GLG VSWW
Sbjct: 175 SLREYKEKQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214
>sp|P39466|RPOE_SULAC DNA-directed RNA polymerase subunit E OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoE PE=1 SV=2
Length = 183
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNE-AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF L + + +R+PP ++E AIK+ L + +K+I ++G+ + I + K E GF+
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKI-LRQEYQEKLIKDIGVVLGIVNAKASEEGFI 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V+F ++V+ P + E+I ++ + D G+ +++G
Sbjct: 60 IFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMG 102
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G
PE=2 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDVVIQQDDEIRLKIV 148
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +I+ G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1
Length = 172
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGFV 59
F+L ++ T+ L P + + +K +L G I + D +I+ G V
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
PG+G + VK+R V++RPF GE++ A + + G ++G +++V SHL+P +
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSHLVPPDMK 121
Query: 120 SEP 122
+P
Sbjct: 122 FDP 124
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L E + +L G ++I I I G +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + L +GFF + I+V HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVT------LVNKMGFFAEAGPVQIFVSKHLIP 114
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G +++ I+ I G +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + +I +++PP L E +K L + ++ ++G +SI D+K+I G V
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ H V F +V+ P + E+I ++ + G + LG + + S ++
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPM 175
D Y Y+ K G +T V++ D ++ R++++ S+ E+ GSK M
Sbjct: 115 --DDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI---SLKAERKRGSKIALTM 165
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E L + P L +L + G I+I + + G V
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G VK++ ++F+PF GE++ A + + +LGFF + I+V + L+P
Sbjct: 61 ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVT------NLGFFAEAGPLSIFVSTQLIP 114
Query: 116 S 116
S
Sbjct: 115 S 115
>sp|Q96A65|EXOC4_HUMAN Exocyst complex component 4 OS=Homo sapiens GN=EXOC4 PE=1 SV=1
Length = 974
Score = 33.9 bits (76), Expect = 0.74, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Query: 3 YLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEG 56
++ +IEH L L P + PL E + + ++N+FL++V+A + KEIEG
Sbjct: 506 FIQEIEHALGLGP-AKQCPLREFLTVYIKNIFLNQVLAEIN--------KEIEG 550
>sp|O35382|EXOC4_MOUSE Exocyst complex component 4 OS=Mus musculus GN=Exoc4 PE=1 SV=2
Length = 975
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Query: 3 YLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEG 56
++ +IEH L L P + PL E + + ++++FL++V+A + KEIEG
Sbjct: 507 FIQEIEHALGLGP-AKQCPLREFLTVYIKSIFLNQVLAEIN--------KEIEG 551
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.144 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,217,157
Number of Sequences: 539616
Number of extensions: 3543713
Number of successful extensions: 6485
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6456
Number of HSP's gapped (non-prelim): 22
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)