Query 029485
Match_columns 192
No_of_seqs 137 out of 1109
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 22:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckz_B C25, DNA-directed RNA p 100.0 3.2E-56 1.1E-60 363.6 24.0 187 1-192 1-211 (218)
2 3ayh_B DNA-directed RNA polyme 100.0 1.8E-55 6E-60 356.1 21.8 187 1-192 1-202 (203)
3 4ayb_E DNA-directed RNA polyme 100.0 5.9E-50 2E-54 317.9 18.2 175 1-192 1-175 (180)
4 3h0g_G DNA-directed RNA polyme 100.0 1.6E-45 5.5E-50 290.7 16.0 169 1-189 1-172 (172)
5 2c35_B Human RPB7, DNA-directe 100.0 5.1E-42 1.7E-46 270.5 21.0 172 1-190 1-172 (172)
6 1go3_E DNA-directed RNA polyme 100.0 4.8E-42 1.6E-46 273.8 20.6 176 1-192 1-176 (187)
7 1y14_B B16, RPB7, DNA-directed 100.0 1.1E-39 3.6E-44 257.1 19.0 169 1-189 1-171 (171)
8 2b8k_G B16, DNA-directed RNA p 100.0 2E-39 6.9E-44 263.8 18.6 170 1-190 1-172 (215)
9 2rf4_A DNA-directed RNA polyme 100.0 3.1E-30 1E-34 209.7 18.1 163 1-182 37-213 (214)
10 1wi5_A RRP5 protein homolog; S 98.9 3.5E-10 1.2E-14 83.2 3.5 81 78-188 18-99 (119)
11 1kl9_A Eukaryotic translation 98.9 5.1E-09 1.7E-13 82.6 7.5 71 73-161 4-80 (182)
12 1luz_A Protein K3, protein K2; 98.9 8.9E-10 3E-14 77.1 2.6 65 77-161 7-75 (88)
13 2k52_A Uncharacterized protein 98.8 1.6E-08 5.4E-13 69.2 8.8 63 77-161 1-64 (80)
14 2khi_A 30S ribosomal protein S 98.8 2.7E-08 9.2E-13 72.7 8.4 72 73-161 22-94 (115)
15 2a19_A EIF-2- alpha, eukaryoti 98.8 4.3E-08 1.5E-12 76.8 9.8 65 79-161 13-80 (175)
16 2cqo_A Nucleolar protein of 40 98.7 6.5E-09 2.2E-13 76.6 4.0 71 71-159 12-84 (119)
17 2eqs_A ATP-dependent RNA helic 98.7 1.7E-08 5.9E-13 72.3 5.9 66 76-158 7-76 (103)
18 2k4k_A GSP13, general stress p 98.7 8.5E-08 2.9E-12 71.6 8.9 67 78-162 4-71 (130)
19 2id0_A Exoribonuclease 2; RNAs 98.7 3.8E-08 1.3E-12 91.0 8.0 82 72-161 549-636 (644)
20 2khj_A 30S ribosomal protein S 98.7 9.4E-08 3.2E-12 69.0 8.4 65 78-160 28-93 (109)
21 2nn6_I 3'-5' exoribonuclease C 98.6 7E-08 2.4E-12 77.6 7.8 84 76-189 76-168 (209)
22 2je6_I RRP4, exosome complex R 98.6 1.2E-07 4.1E-12 78.3 8.0 84 76-189 69-153 (251)
23 2ba0_A Archeal exosome RNA bin 98.5 2.5E-07 8.5E-12 75.4 8.2 81 77-189 53-134 (229)
24 2wp8_J Exosome complex exonucl 98.5 4.3E-08 1.5E-12 94.3 2.7 79 72-158 878-964 (977)
25 1q8k_A Eukaryotic translation 98.4 1E-06 3.5E-11 74.7 9.4 65 79-161 11-78 (308)
26 3aev_A Translation initiation 98.4 1E-06 3.5E-11 73.6 9.2 65 79-161 9-76 (275)
27 2z0s_A Probable exosome comple 98.4 4.6E-07 1.6E-11 74.0 6.4 84 77-189 62-146 (235)
28 2vnu_D Exosome complex exonucl 98.3 1.6E-07 5.4E-12 88.4 2.0 80 72-159 661-748 (760)
29 2ja9_A Exosome complex exonucl 98.3 2.4E-06 8.3E-11 66.8 8.3 80 77-190 3-90 (175)
30 3m7n_A Putative uncharacterize 98.2 1.3E-06 4.6E-11 68.4 5.9 75 77-189 54-139 (179)
31 3psi_A Transcription elongatio 98.2 3.5E-06 1.2E-10 82.5 9.3 66 79-161 900-966 (1219)
32 2nn6_H Exosome complex exonucl 98.2 1.2E-06 4.3E-11 74.1 4.8 91 77-190 91-182 (308)
33 3bzc_A TEX; helix-turn-helix, 98.1 9.2E-07 3.2E-11 83.3 3.3 66 79-162 652-718 (785)
34 3cdi_A Polynucleotide phosphor 98.1 3.6E-07 1.2E-11 85.4 0.0 70 71-158 617-687 (723)
35 3cw2_C Translation initiation 98.0 1.6E-06 5.6E-11 72.0 2.7 66 78-161 8-76 (266)
36 3psf_A Transcription elongatio 98.0 7.7E-07 2.6E-11 85.9 0.0 66 79-161 903-969 (1030)
37 4aid_A Polyribonucleotide nucl 98.0 3.3E-07 1.1E-11 85.6 -2.5 71 70-158 626-697 (726)
38 1e3p_A Guanosine pentaphosphat 97.8 3.2E-07 1.1E-11 86.1 -5.9 70 71-158 655-731 (757)
39 2bh8_A 1B11; transcription, mo 97.6 2.2E-05 7.7E-10 55.8 2.7 60 55-114 29-95 (101)
40 3go5_A Multidomain protein wit 97.6 0.00032 1.1E-08 58.7 9.4 67 80-186 151-219 (285)
41 1hh2_P NUSA, N utilization sub 97.3 0.00048 1.6E-08 59.1 7.2 59 78-160 131-189 (344)
42 1k0r_A NUSA; two component arr 97.0 0.00089 3.1E-08 57.7 6.1 60 77-160 126-193 (366)
43 2nn6_G Exosome complex exonucl 96.9 0.0026 9E-08 53.2 7.4 79 77-189 123-207 (289)
44 2asb_A Transcription elongatio 96.8 0.0033 1.1E-07 51.5 7.7 60 77-160 3-70 (251)
45 3go5_A Multidomain protein wit 96.4 0.0083 2.8E-07 50.0 7.3 34 80-113 68-104 (285)
46 2bx2_L Ribonuclease E, RNAse E 94.3 0.071 2.4E-06 47.9 6.4 72 78-159 42-117 (517)
47 2r7d_A Ribonuclease II family 87.0 0.11 3.9E-06 46.0 -0.2 62 72-162 394-455 (469)
48 2l55_A SILB,silver efflux prot 62.3 7.3 0.00025 25.9 3.3 55 85-156 6-61 (82)
49 3d0f_A Penicillin-binding 1 tr 51.6 33 0.0011 23.4 5.4 62 79-152 31-93 (106)
50 2qcp_X Cation efflux system pr 47.6 20 0.00068 23.6 3.6 57 84-156 9-67 (80)
51 3ie4_A GRAM-negative binding p 47.4 13 0.00044 26.1 2.7 31 122-157 52-82 (107)
52 2vb2_X Copper protein, cation 45.9 21 0.00073 23.9 3.6 57 84-156 17-75 (88)
53 2ovm_B NCOR, progesterone rece 40.9 19 0.00066 18.5 2.0 14 21-34 12-25 (26)
54 2p9r_A Alpha-2-M, alpha-2-macr 33.5 32 0.0011 22.9 3.0 20 140-159 10-29 (102)
55 2l74_A Putative uncharacterize 27.7 93 0.0032 22.4 4.8 36 65-102 31-66 (145)
56 1iby_A Nitrosocyanin; RED copp 26.6 77 0.0026 21.2 4.0 22 136-157 35-56 (112)
57 1cyx_A CYOA; electron transpor 26.0 53 0.0018 25.7 3.3 20 139-158 41-60 (205)
58 3aqy_A Beta-1,3-glucan-binding 24.8 34 0.0012 23.8 1.8 29 123-156 54-82 (106)
59 2kha_A Beta-1,3-glucan-binding 22.8 43 0.0015 24.2 2.1 29 123-156 63-91 (130)
60 1ywu_A Hypothetical protein PA 21.5 1E+02 0.0034 22.3 4.0 33 68-102 36-68 (149)
No 1
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-56 Score=363.55 Aligned_cols=187 Identities=38% Similarity=0.729 Sum_probs=170.9
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeecccccceeecCCCceeeEEEEEEEEEecC
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPF 80 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~~i~~g~I~~~~g~~~~~V~f~~~vf~p~ 80 (192)
||++++++|+|+|||++||++++++|+++|+++|+|||++++|+|||++||.++++|+|.+|||+++|+|+|+|++|+|+
T Consensus 1 MF~l~~l~d~V~I~P~~f~~~l~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~ 80 (218)
T 2ckz_B 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPF 80 (218)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHcCchHHHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEeCCeeEEEe-CccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEe-CCceeEEcCCCEEEEEEEEEec
Q 029485 81 VGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRVLSVNY 158 (192)
Q Consensus 81 ~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~-~~~~~~i~~G~~VrvrV~~v~~ 158 (192)
+||+++|+|++|+++|+||+| |++++++|+++++++++.| |++++. |+|.+ ++++++|++||.|||||.++++
T Consensus 81 vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~f--d~~~~~---~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 81 LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYY--TPEESA---WIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp TTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEE--ETTTTE---EEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEE--cCcCce---EEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 999999999999999999999 9999999999999999999 999999 77766 7789999999999999999999
Q ss_pred CCCcc------cc----------------cCCCCCCCCeEEEEEecCCCCccccCC
Q 029485 159 PSIPI------EQ----------------AEGSKPFAPMVINGSIDYDGLGPVSWW 192 (192)
Q Consensus 159 ~~~~~------~~----------------~~~~~~~~~~~i~gs~~~~gLG~isWw 192 (192)
.++.. +. .+..+++|||.|+|||+++|||+++||
T Consensus 156 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~gs~~~~GLG~~~ww 211 (218)
T 2ckz_B 156 VDVKPKSPKERELEERAQLENEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211 (218)
T ss_dssp CCCCC-------------------------------CSEEEEEECCSTTCEEGGGC
T ss_pred ccCCCCCccccccccccccccccccccccccccCCCCCeEEEEEecCCCCchhhhh
Confidence 88632 11 112246789999999999999999999
No 2
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-55 Score=356.06 Aligned_cols=187 Identities=34% Similarity=0.711 Sum_probs=171.9
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeecccccceeecCCCceeeEEEEEEEEEecC
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPF 80 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~~i~~g~I~~~~g~~~~~V~f~~~vf~p~ 80 (192)
||++++++|+|+|||++||+++.++|+++|+++|+|||++++|+||+++++.++++|+|.+|||+++++|+|+|++|+|+
T Consensus 1 MF~l~~l~d~V~i~P~~f~~~~~~~i~~~L~~~~egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~f~p~ 80 (203)
T 3ayh_B 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPF 80 (203)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHcCChHHHHHHHHhhhhhCCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEe------CCceeEEcCCCEEEEEEE
Q 029485 81 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF------GDTKYVIDGLDEIKFRVL 154 (192)
Q Consensus 81 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~------~~~~~~i~~G~~VrvrV~ 154 (192)
+||+++|+|++++++|+||+||++++++||++++++++.| |++++. |+|.+ ++++++|++||.|||||.
T Consensus 81 ~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~f--d~~~~~---~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 81 RGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF--RPDERA---WVWKIEGEDGSEGTELYFDIDEEIRFQIE 155 (203)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEE--EGGGTE---EEEEECCCTTSCCEEEECCTTCEEEEEEE
T ss_pred CCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceE--CccCce---EEeecccccccccCCcEEcCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999 999998 88877 888999999999999999
Q ss_pred EEecCCCccccc---------CCCCCCCCeEEEEEecCCCCccccCC
Q 029485 155 SVNYPSIPIEQA---------EGSKPFAPMVINGSIDYDGLGPVSWW 192 (192)
Q Consensus 155 ~v~~~~~~~~~~---------~~~~~~~~~~i~gs~~~~gLG~isWw 192 (192)
++++.++..... +.++..++|.|+|||++||||+++||
T Consensus 156 ~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~~Ww 202 (203)
T 3ayh_B 156 SEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIPAWW 202 (203)
T ss_dssp EEEECC--------------------CCSEEEEEEBCSTTCBCGGGG
T ss_pred EEEccccCCCCccccccccccccccCCCCeEEEEEecCCCCceeeec
Confidence 999987532111 11225679999999999999999999
No 3
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=100.00 E-value=5.9e-50 Score=317.87 Aligned_cols=175 Identities=27% Similarity=0.429 Sum_probs=164.5
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeecccccceeecCCCceeeEEEEEEEEEecC
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPF 80 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~~i~~g~I~~~~g~~~~~V~f~~~vf~p~ 80 (192)
||++++++|+|+|||++|++++.++|+++|+++|+|||+++.|+||+++||.++++|+|.++||.++++++|+|++|+|+
T Consensus 1 Mf~l~~l~d~V~IpP~~f~~~~~~~i~~~L~~k~~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv~~p~ 80 (180)
T 4ayb_E 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPV 80 (180)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHTTTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEEECCC
T ss_pred CeEEEEEEEEEEECHHHhCccHHHHHHHHHHHHhcCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEecCC
Q 029485 81 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160 (192)
Q Consensus 81 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~~~~ 160 (192)
+||+++|+|++++++|+||++|++++++|+++++++++.| |++.+. |.+++++.+|++||.|||||.+++...
T Consensus 81 ~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~--d~~~~~-----~~g~~~~~~~~~Gd~VrvkV~~v~~~~ 153 (180)
T 4ayb_E 81 VQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKY--DNVRGI-----IFGEKSKKVIQKGDKVRARVISVASTV 153 (180)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEE--CSSSCC-----EEETTTCCCCCTTCEEEEEEEEECC--
T ss_pred CCCEEEEEEeeeccceEEEEECCccceEEeeecCCCcccc--chhcce-----EEEeccCeEECCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999 999888 778899999999999999999998644
Q ss_pred CcccccCCCCCCCCeEEEEEecCCCCccccCC
Q 029485 161 IPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~gs~~~~gLG~isWw 192 (192)
. .. ..+|.+||++||||+++||
T Consensus 154 ~---~~-------~~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 154 T---GR-------LPRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp ---------------CEEEECCSTTCEEHHHH
T ss_pred C---cc-------cCcEEEEcCCCCCCCChhH
Confidence 2 11 1479999999999999999
No 4
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-45 Score=290.73 Aligned_cols=169 Identities=21% Similarity=0.352 Sum_probs=155.3
Q ss_pred CeEEEEEee-EEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEe--eecccccceeecCCCceeeEEEEEEEEE
Q 029485 1 MFYLSKIEH-TLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIY--DIKEIEGGFVYPGEGASTHTVKFRLVVF 77 (192)
Q Consensus 1 MF~~~~l~d-~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~--~i~~i~~g~I~~~~g~~~~~V~f~~~vf 77 (192)
||++.+++| +|++||++|++++.++++.+|+++|+|||+++.|+||+++ ||.++++|+|.++||+++++|+|+|++|
T Consensus 1 Mf~l~~l~d~~i~ipp~~~~~~~~~~i~~~l~~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~~ivf 80 (172)
T 3h0g_G 1 MPFFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLW 80 (172)
T ss_dssp --CEEEEEEEEEECCGGGCTTTHHHHHHHHHHHHHTTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEEEEEE
T ss_pred CeEEEEEecCeEEeCHHHhCccHHHHHHHHHHHHhCCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEEEeee
Confidence 999999999 9999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ecCCCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 78 RPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
+|++||+++|+|++++++|+||++|++++++|.+++ ++++.| |++++. |.| ++++..+++||.|||||.+++
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l-~~~~~~--d~~~~~---~~~--~~~~~~~~~Gd~VrvkV~~vd 152 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLV-PPDMKF--DPTANP---PNY--SGEDQVIEKGSNVRLKIVGTR 152 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGS-CTTCCC--BSSSSS---CBE--ESSSCEECSSCCEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHC-CCcccc--Cccccc---ceE--ecCCcEECCCCEEEEEEEEEE
Confidence 999999999999999999999999999987777765 888999 987655 666 667789999999999999999
Q ss_pred cCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 158 YPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
++++ .+.++|||++||||++
T Consensus 153 ~~~~------------~~~~Igtm~~~~LG~~ 172 (172)
T 3h0g_G 153 TDAT------------EIFAIATMKEDYLGVL 172 (172)
T ss_dssp ESSS------------CEEEEEECCSTTCEEC
T ss_pred CCCC------------CceEEEEcCCCCCCCC
Confidence 8653 2688889999999986
No 5
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=5.1e-42 Score=270.47 Aligned_cols=172 Identities=28% Similarity=0.425 Sum_probs=161.5
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeecccccceeecCCCceeeEEEEEEEEEecC
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPF 80 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~~i~~g~I~~~~g~~~~~V~f~~~vf~p~ 80 (192)
||++.+++++|++||++|++++.++++.+|+.+|+||++.+.|+||++++|.++++|++.++||.++++++|++++|+|+
T Consensus 1 mfil~~m~~~I~~~p~~~~~~~~~~i~~~l~~~~~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~~~~~ 80 (172)
T 2c35_B 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPF 80 (172)
T ss_dssp CEEEEEEEEEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEEECCC
T ss_pred CcEEEEEeEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEecCC
Q 029485 81 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160 (192)
Q Consensus 81 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~~~~ 160 (192)
+||+++|+|++++++|+||++|++++++|.+++ +++|.| |+.++. |.|.+++++.++++||.|||||.+++++.
T Consensus 81 ~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l-~~~~~~--d~~~~~---~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 81 KGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSI-PSEMEF--DPNSNP---PCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTEEEEEEGGGS-CTTEEE--ESSSSS---CEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHC-CCCcEE--CCCCCc---cEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 999999999999999999999999977777755 788889 998877 88999998999999999999999999854
Q ss_pred CcccccCCCCCCCCeEEEEEecCCCCcccc
Q 029485 161 IPIEQAEGSKPFAPMVINGSIDYDGLGPVS 190 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~gs~~~~gLG~is 190 (192)
+ ++.++|||++||||+++
T Consensus 155 ~------------~~~~igsm~~~~LG~~~ 172 (172)
T 2c35_B 155 N------------DIFAIGSLMDDYLGLVS 172 (172)
T ss_dssp T------------EEEEEEECCSTTCEEC-
T ss_pred C------------CcEEEEEecCCCCCCCC
Confidence 3 38899999999999986
No 6
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=4.8e-42 Score=273.76 Aligned_cols=176 Identities=22% Similarity=0.341 Sum_probs=162.9
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeecccccceeecCCCceeeEEEEEEEEEecC
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPF 80 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~~i~~g~I~~~~g~~~~~V~f~~~vf~p~ 80 (192)
||++++++++++|||++++..+.++|++.|+++|+|||.++.|+||+++|+.+.++|+|.++||.+++++.|++++|+|+
T Consensus 1 Mf~~~~l~~~i~I~P~~~~~~i~~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~~~~~ 80 (187)
T 1go3_E 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPE 80 (187)
T ss_dssp CEEEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEEECCC
T ss_pred CcEEEEEEEEEEECHHHhCccHHHHHHHHHHHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEecCC
Q 029485 81 VGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160 (192)
Q Consensus 81 ~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~~~~ 160 (192)
+||+++|+|++++++|+||+++++++++|+++++++++.| |++++. |.+++.+.++++||.|||||.+++..+
T Consensus 81 ~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~--d~~~~~-----~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 153 (187)
T 1go3_E 81 MYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSY--DPKREA-----IIGKETGKVLEIGDYVRARIVAISLKA 153 (187)
T ss_dssp TTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEE--CCC--C-----EEETTTCCEECTTCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceE--CCccce-----EEecCCCeEEcCCCEEEEEEEEEEccc
Confidence 9999999999999999999999999999999999999999 999888 666777889999999999999999754
Q ss_pred CcccccCCCCCCCCeEEEEEecCCCCccccCC
Q 029485 161 IPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~gs~~~~gLG~isWw 192 (192)
+.++ +++|.+|++++|||+++||
T Consensus 154 ~~p~---------~~~I~lS~k~~~LG~~~w~ 176 (187)
T 1go3_E 154 ERKR---------GSKIALTMRQPYLGKLEWI 176 (187)
T ss_dssp --------------CEEEEECCSTTCEEHHHH
T ss_pred CCCC---------ccEEEEEEcCCCCCcHHHH
Confidence 3110 3699999999999999999
No 7
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=100.00 E-value=1.1e-39 Score=257.10 Aligned_cols=169 Identities=20% Similarity=0.380 Sum_probs=141.8
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeec--ccccceeecCCCceeeEEEEEEEEEe
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGFVYPGEGASTHTVKFRLVVFR 78 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~--~i~~g~I~~~~g~~~~~V~f~~~vf~ 78 (192)
||++.+++++|++||++|++++.+++..+|+.+|+|+++.+.|+||+++||. ++++|+|.++||.+++++.|++++|+
T Consensus 1 mfil~~m~~~i~~pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~ 80 (171)
T 1y14_B 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80 (171)
T ss_dssp CEEEEEEEEECCCCTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEEC
T ss_pred CeEEEEEEEEEEECHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEcc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEec
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY 158 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~~ 158 (192)
|++||+++|+|++++++|+||++|+.++++|.+++ ++++.| |+.++. |+|.+++ ..+++||.|||||.++++
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l-~~~~~~--d~~~~~---~~~~~~~--~~~~~Gd~V~vkV~~vd~ 152 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLM-PQDLTF--NAGSNP---PSYQSSE--DVITIKSRIRVKIEGCIS 152 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGS-CTTCEE--CC--------CEECSS--CEECTTCEEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHC-CCCceE--CcccCc---eEEeccc--eEECCCCEEEEEEEEEEc
Confidence 99999999999999999999999998877777754 788889 998887 8898876 569999999999999998
Q ss_pred CCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 159 PSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
+.+ ++.++|||++||||++
T Consensus 153 ~~~------------~~~~igsm~~~~LG~~ 171 (171)
T 1y14_B 153 QVS------------SIHAIGSIKEDYLGAI 171 (171)
T ss_dssp ETT------------EEEEEEECCSTTCEEC
T ss_pred CCC------------CcEEEEEcCCCCCCCC
Confidence 543 4899999999999985
No 8
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=100.00 E-value=2e-39 Score=263.77 Aligned_cols=170 Identities=21% Similarity=0.382 Sum_probs=158.5
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccccEEEEEeeec--ccccceeecCCCceeeEEEEEEEEEe
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGFVYPGEGASTHTVKFRLVVFR 78 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~G~~i~i~~i~--~i~~g~I~~~~g~~~~~V~f~~~vf~ 78 (192)
||++.+++++|++||++|++++.+++..+|+.+|+|+|+.+.|+||+++||. ++++|+|.++||.+++++.|++++|+
T Consensus 1 MfiL~~m~~~I~ipp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~ 80 (215)
T 2b8k_G 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFK 80 (215)
T ss_dssp CEEEECCEEEEEECGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEEC
T ss_pred CEEeHHHHhhhhcCHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheec
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEec
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY 158 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~~ 158 (192)
|++||+++|+|++++++|+||++|+.++++|.++ +++++.| |+.++. |.|.+++ ..+++||.|||||.++++
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~-l~d~~~~--d~~~~~---w~~~~~~--~~~~~Gd~VrVkV~~vd~ 152 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHL-MPQDLTF--NAGSNP---PSYQSSE--DVITIKSRIRVKIEGCIS 152 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTTSEEEEEGGG-SCSSCCC--BSSCSS---CEEECSS--CEEETTCEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecCcEEEEEHHH-CCcccee--cccccc---ceeeccc--cEECCCCEEEEEEEEEEc
Confidence 9999999999999999999999999888888875 4788889 999887 8899876 579999999999999998
Q ss_pred CCCcccccCCCCCCCCeEEEEEecCCCCcccc
Q 029485 159 PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVS 190 (192)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~is 190 (192)
+.+ ++.++|||+++|||+++
T Consensus 153 ~~~------------~i~~IgSmk~~~LG~~~ 172 (215)
T 2b8k_G 153 QVS------------SIHAIGSIKEDYLGAIS 172 (215)
T ss_dssp ETT------------EEEEEEECCSTTCEEC-
T ss_pred CCC------------ccEEEEEcCCCCCCCcc
Confidence 543 37899999999999985
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=209.72 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=128.7
Q ss_pred CeEEEEEeeEEEECCCCCCccHHHHHHHHHHhHhcceEeccc-cEEEEEeeeccccc------------ceeecCCCcee
Q 029485 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANL-GLCISIYDIKEIEG------------GFVYPGEGAST 67 (192)
Q Consensus 1 MF~~~~l~d~v~I~P~~~~~~~~~~i~~~L~~k~~gk~~~~~-G~~i~i~~i~~i~~------------g~I~~~~g~~~ 67 (192)
||+++++++.|+|||++|++++..++.+.|+.+ .+|+.++. |+|++++++...++ |+|.+++|+++
T Consensus 37 mF~l~~~~~~V~L~P~~f~~~~~~i~~~~L~~l-l~ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~g~~~ 115 (214)
T 2rf4_A 37 CIVRVPIALYVSLAPMYLENPLQGVMKQHLNPL-VMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGF 115 (214)
T ss_dssp CEEEEEEEEEEECCGGGTTCHHHHHHHHHHHHH-BTSEETTTTEEEEEEEEEETTSCCC-----------------CCCE
T ss_pred cEEEEEEEEEEEECHHHhCChhHHHHHHHHHHH-HhcccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCCceEE
Confidence 999999999999999999988877777888887 67887887 89999999976664 79999999999
Q ss_pred eEEEEEEEEEecCCCcEEEEEEEEEeCCeeEEE-eCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCC
Q 029485 68 HTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 146 (192)
Q Consensus 68 ~~V~f~~~vf~p~~gEv~~g~V~~v~~~Gifv~-lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G 146 (192)
++|+|++++|||++||+++|+|+.+++.||.+. +|+|+ ++||++.+|+++.| ++++..+..++|..+++. ++|
T Consensus 116 ~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn-~~Ip~~~ip~~~~f--~~~~~~~~~~~wv~~~~~---~ig 189 (214)
T 2rf4_A 116 TWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDAFN-ASIKKNNIPVDWTF--VHNDGNRSLGHWVDSNGE---PID 189 (214)
T ss_dssp EEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTTEE-EEECSTTSCSSCBC--CCCSCC-CCCCCBCSSCC---BCC
T ss_pred EEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCCEE-EEEcHHHCCCcccc--cccccccCCCceEcCCCC---CCC
Confidence 999999999999999999999999999999984 69996 89999999999999 776510000224433333 259
Q ss_pred CEEEEEEEEEecCCCcccccCCCCCCCCeEEEEEec
Q 029485 147 DEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSID 182 (192)
Q Consensus 147 ~~VrvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~ 182 (192)
+.|||||.+++.... -..|.|||-
T Consensus 190 ~~IRFrV~~~~~~~~------------~lsI~Gsll 213 (214)
T 2rf4_A 190 GKLRFTVRNVHTTGR------------VVSVDGTLI 213 (214)
T ss_dssp SEEEEEEEEEECCSS------------SCEEEEECC
T ss_pred CEEEEEEEEEEecCC------------EEEEEEEec
Confidence 999999999986332 268888874
No 10
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.95 E-value=3.5e-10 Score=83.23 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=61.6
Q ss_pred ecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 78 RPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
.+.+|++++|+|++++++|+||+++ .-.+.+|+++...+++.| +.. +..+++||.|+|+|.++
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~--~~~--------------~~~~~~Gd~V~vkV~~v 81 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQ--KNK--------------GAKLKVGQYLNCIVEKV 81 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHH--HSS--------------SCCCCTTCEEEEEEEEC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccc--cCc--------------cCEeCCCCEEEEEEEEE
Confidence 3678999999999999999999998 334677777665443334 321 23799999999999999
Q ss_pred ecCCCcccccCCCCCCCCeEEEEEecCCCCcc
Q 029485 157 NYPSIPIEQAEGSKPFAPMVINGSIDYDGLGP 188 (192)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~ 188 (192)
+...+ +|..|++++.||.
T Consensus 82 d~~~~--------------~i~Lslk~~~l~~ 99 (119)
T 1wi5_A 82 KGNGG--------------VVSLSVGHSEVST 99 (119)
T ss_dssp CTTSC--------------EEEEECCCCCSCC
T ss_pred eCCCC--------------EEEEEEchhhccc
Confidence 76433 6777888877775
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.86 E-value=5.1e-09 Score=82.63 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=51.9
Q ss_pred EEEEEe---cCCCcEEEEEEEEEeCCeeEEEe---CccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCC
Q 029485 73 RLVVFR---PFVGEIIAAKLKESDANGLRLSL---GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 146 (192)
Q Consensus 73 ~~~vf~---p~~gEv~~g~V~~v~~~Gifv~l---g~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G 146 (192)
+|-+|+ |.+|++++|+|++++++|+||+| +.++|++|.+++..++. ++....+++|
T Consensus 4 ~~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v------------------~~~~~~~~vG 65 (182)
T 1kl9_A 4 SCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRI------------------RSINKLIRIG 65 (182)
T ss_dssp CCCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------------------------CTT
T ss_pred eeEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCccc------------------CCHHHhcCCC
Confidence 345555 68999999999999999999999 67899999998754421 1223389999
Q ss_pred CEEEEEEEEEecCCC
Q 029485 147 DEIKFRVLSVNYPSI 161 (192)
Q Consensus 147 ~~VrvrV~~v~~~~~ 161 (192)
|.|+|+|.+++..++
T Consensus 66 d~V~VkVl~vD~~~~ 80 (182)
T 1kl9_A 66 RNECVVVIRVDKEKG 80 (182)
T ss_dssp CEEEEEEEEEETTTT
T ss_pred CEEEEEEEEEECCCC
Confidence 999999999986543
No 12
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.85 E-value=8.9e-10 Score=77.10 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=52.3
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC---ccceEEecC-CCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPS-HLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFR 152 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~-~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~Vrvr 152 (192)
+.|.+|++++|+|+ ++++|+||+|+ ..+|++|.+ ++..+++.+ . ...+ +||.|+||
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~--~----------------~~~~-~Gd~V~Vk 66 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVE--Y----------------RDKL-VGKTVKVK 66 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHH--H----------------HHHH-TTCEEEEE
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccC--H----------------hHEe-CCCEEEEE
Confidence 56999999999999 99999999994 489999999 875543222 1 1145 99999999
Q ss_pred EEEEecCCC
Q 029485 153 VLSVNYPSI 161 (192)
Q Consensus 153 V~~v~~~~~ 161 (192)
|.+++..++
T Consensus 67 V~~vd~~~~ 75 (88)
T 1luz_A 67 VIRVDYTKG 75 (88)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999997654
No 13
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.85 E-value=1.6e-08 Score=69.17 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=51.7
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.+.+|++++|+|++++++|+||+++ ..+++++.+++..+ + . ..+++||.|+++|.+
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~---~--~-----------------~~~~~Gd~V~v~V~~ 58 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISL---R--L-----------------ENLNVGDEIIVQAID 58 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSC---C--G-----------------GGCCTTCEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcc---c--c-----------------eeeCCCCEEEEEEEE
Confidence 46889999999999999999999997 78888888765322 1 0 268999999999999
Q ss_pred EecCCC
Q 029485 156 VNYPSI 161 (192)
Q Consensus 156 v~~~~~ 161 (192)
++..++
T Consensus 59 vd~~~~ 64 (80)
T 2k52_A 59 VRPEKR 64 (80)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 987543
No 14
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.77 E-value=2.7e-08 Score=72.66 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=55.5
Q ss_pred EEEEEecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEE
Q 029485 73 RLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKF 151 (192)
Q Consensus 73 ~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~Vrv 151 (192)
..+..++.+|++++|+|++++++|+||+++ ..+++++.+++..+. + . ++.+..+++||.|++
T Consensus 22 ~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~--~--~-------------~~~~~~~~vGd~V~v 84 (115)
T 2khi_A 22 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN--K--N-------------IHPSKVVNVGDVVEV 84 (115)
T ss_dssp CCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSS--T--T-------------CSSTTTCCTTCEEEE
T ss_pred HHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccc--c--c-------------cCcccEECCCCEEEE
Confidence 334467889999999999999999999996 678888888763321 1 1 122337999999999
Q ss_pred EEEEEecCCC
Q 029485 152 RVLSVNYPSI 161 (192)
Q Consensus 152 rV~~v~~~~~ 161 (192)
+|.+++..++
T Consensus 85 kV~~vd~~~~ 94 (115)
T 2khi_A 85 MVLDIDEERR 94 (115)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 9999987544
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.76 E-value=4.3e-08 Score=76.81 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=49.3
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEe---CccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 79 PFVGEIIAAKLKESDANGLRLSL---GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~l---g~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.+|+++.|+|++++++|+||+| +..++++|.+++..++. ++....+++||.|+|+|.+
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v------------------~~~~~~~~vGd~V~vkVl~ 74 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRI------------------RSIQKLIRVGKNDVAVVLR 74 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------------------------CCCCCCCTTSEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCccc------------------CCHHHcCCCCCEEEEEEEE
Confidence 45899999999999999999999 57899999998754321 1223379999999999999
Q ss_pred EecCCC
Q 029485 156 VNYPSI 161 (192)
Q Consensus 156 v~~~~~ 161 (192)
++..++
T Consensus 75 vd~~~~ 80 (175)
T 2a19_A 75 VDKEKG 80 (175)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 987554
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.5e-09 Score=76.60 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=56.9
Q ss_pred EEEEEEEecCCCcEEEEEEEEEeCCeeEEEeCc--cceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCE
Q 029485 71 KFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF--FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE 148 (192)
Q Consensus 71 ~f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg~--~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~ 148 (192)
.++.+...|.+|+++.|+|++++++|+||+|+. .++++|.+++..++ + ++....+++||.
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~--~----------------~~~~~~~~~Gd~ 73 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCR--V----------------DKPSEIVDVGDK 73 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSC--C----------------SCHHHHCCTTCE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCccc--c----------------cChhhcCCCCCE
Confidence 445566789999999999999999999999953 58999998775432 1 122337999999
Q ss_pred EEEEEEEEecC
Q 029485 149 IKFRVLSVNYP 159 (192)
Q Consensus 149 VrvrV~~v~~~ 159 (192)
|+|||.+++..
T Consensus 74 V~VkV~~vd~~ 84 (119)
T 2cqo_A 74 VWVKLIGREMK 84 (119)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEecc
Confidence 99999999864
No 17
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=1.7e-08 Score=72.35 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=53.4
Q ss_pred EEecCCCcEEEEEEEEEeCCeeEEEeC----ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEE
Q 029485 76 VFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKF 151 (192)
Q Consensus 76 vf~p~~gEv~~g~V~~v~~~Gifv~lg----~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~Vrv 151 (192)
.+.+.+|++++|+|++++++|+||+++ ..++++|.+++..+. + - ++....+++||.|++
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~--~--~-------------~~~~~~~~~Gd~V~V 69 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG--R--V-------------ANVADVVSKGQRVKV 69 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS--C--C-------------CCHHHHCCTTCEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc--c--c-------------CCcccEeCCCCEEEE
Confidence 356889999999999999999999997 578999998774431 1 1 233347999999999
Q ss_pred EEEEEec
Q 029485 152 RVLSVNY 158 (192)
Q Consensus 152 rV~~v~~ 158 (192)
||.+++.
T Consensus 70 kV~~vd~ 76 (103)
T 2eqs_A 70 KVLSFTG 76 (103)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999984
No 18
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.68 E-value=8.5e-08 Score=71.56 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=54.1
Q ss_pred ecCCCcEEEEEEEEEeCCeeEEEe-CccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 78 RPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
.+.+|+++.|+|++++++|+||+| +..+++++.+++.+++. . + ....+++||.|+|+|.++
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~-~--~---------------~~~~~~vGd~V~vkV~~v 65 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFV-K--D---------------INEHLSVGDEVQVKVLAV 65 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCC-S--C---------------GGGTCCTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccc-c--C---------------ccccCCCCCEEEEEEEEE
Confidence 467899999999999999999999 47889999988765421 1 1 123799999999999999
Q ss_pred ecCCCc
Q 029485 157 NYPSIP 162 (192)
Q Consensus 157 ~~~~~~ 162 (192)
+..++.
T Consensus 66 d~~~~k 71 (130)
T 2k4k_A 66 DEEKGK 71 (130)
T ss_dssp ETTTTE
T ss_pred eCCCCE
Confidence 975553
No 19
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.67 E-value=3.8e-08 Score=91.02 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=69.5
Q ss_pred EEEEEEecCCCc--EEEEEEEEEeCCeeEEEeC--ccceEEecCCCCC--CCCCcCcCCCCCeeeeEEEEeCCceeEEcC
Q 029485 72 FRLVVFRPFVGE--IIAAKLKESDANGLRLSLG--FFEDIYVPSHLLP--SPSRSEPDPYGRYEVKWIWEFGDTKYVIDG 145 (192)
Q Consensus 72 f~~~vf~p~~gE--v~~g~V~~v~~~Gifv~lg--~~~~i~i~~~~~~--~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~ 145 (192)
++|.+|++++|+ +++|+|++++++|+||.|. .++++++.+++.+ +++.| |+.... +.. +++..|++
T Consensus 549 ~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~--d~~~~~-----l~~-~~~~~~~l 620 (644)
T 2id0_A 549 LYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVC--SQENGT-----VQI-KGETVYKV 620 (644)
T ss_dssp HHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEE--ETTTTE-----EEE-TTEEEEET
T ss_pred HHHHHhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEE--cccccE-----EEe-cCCCEeCC
Confidence 456678899999 9999999999999999993 5789999988864 67788 988877 533 67789999
Q ss_pred CCEEEEEEEEEecCCC
Q 029485 146 LDEIKFRVLSVNYPSI 161 (192)
Q Consensus 146 G~~VrvrV~~v~~~~~ 161 (192)
||.|+|||.+++..++
T Consensus 621 GD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 621 TDVIDVTIAEVRMETR 636 (644)
T ss_dssp TCEEEEEEEEEETTTT
T ss_pred CCEEEEEEEEEeCCCC
Confidence 9999999999997654
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.66 E-value=9.4e-08 Score=69.01 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=51.6
Q ss_pred ecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 78 RPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
.+.+|+++.|+|++++++|+||+++ .++++++.+++.++ + . ++....+++||.|+++|.++
T Consensus 28 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~---~--~-------------~~~~~~~~vGd~V~v~V~~v 89 (109)
T 2khj_A 28 LNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRD---R--V-------------EDATLVLSVGDEVEAKFTGV 89 (109)
T ss_dssp TCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSS---S--S-------------SSGGGSCCTTCEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcc---c--c-------------cChhhccCCCCEEEEEEEEE
Confidence 5678999999999999999999997 67888877766433 1 1 12223799999999999999
Q ss_pred ecCC
Q 029485 157 NYPS 160 (192)
Q Consensus 157 ~~~~ 160 (192)
+...
T Consensus 90 d~~~ 93 (109)
T 2khj_A 90 DRKN 93 (109)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8754
No 21
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.64 E-value=7e-08 Score=77.64 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=63.5
Q ss_pred EEecCCCcEEEEEEEEEeCCeeEEEeC---------ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCC
Q 029485 76 VFRPFVGEIIAAKLKESDANGLRLSLG---------FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 146 (192)
Q Consensus 76 vf~p~~gEv~~g~V~~v~~~Gifv~lg---------~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G 146 (192)
.+.|.+|+++.|+|++++++|+||+++ .++++++.++.....-.. . +-...+++|
T Consensus 76 ~y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~--~--------------~~~~~l~~G 139 (209)
T 2nn6_I 76 QLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDK--V--------------EIYKSFRPG 139 (209)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCC--C--------------CGGGTCCSS
T ss_pred cCCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccc--c--------------chhhhcCCC
Confidence 368999999999999999999999984 456777776554331111 0 112369999
Q ss_pred CEEEEEEEEEecCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 147 DEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 147 ~~VrvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
|.|++||++++-.. -++..|+++.+||.+
T Consensus 140 D~V~akVisi~~~~--------------~~i~LS~k~~~lGVv 168 (209)
T 2nn6_I 140 DIVLAKVISLGDAQ--------------SNYLLTTAENELGVV 168 (209)
T ss_dssp SEEEEEEEEEETTT--------------TEEEEECCSSSCEEC
T ss_pred CEEEEEEEEEeCCC--------------CeEEEEEecCCCcEE
Confidence 99999999996321 178999999999986
No 22
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.59 E-value=1.2e-07 Score=78.29 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=66.5
Q ss_pred EEecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEE
Q 029485 76 VFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154 (192)
Q Consensus 76 vf~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~ 154 (192)
.|.|.+|+++.|+|++++++|+||+++ +++++++.++......+. | . +-...+++||.|++||.
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~--~-~------------~~~~~l~vGD~V~arVi 133 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINV--G-E------------DLRRYLDVGDYVIARIE 133 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCT--T-C------------CCSSSCCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCcccc--c-c------------chhhcCCCCCEEEEEEE
Confidence 378999999999999999999999998 788999888765432111 2 1 12237999999999999
Q ss_pred EEecCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 155 SVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 155 ~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
+++-. ..+..|+++++||.+
T Consensus 134 ~v~~~---------------~~i~LS~r~~~lG~L 153 (251)
T 2je6_I 134 NFDRS---------------IDPVLSVKGKDLGRV 153 (251)
T ss_dssp EEETT---------------EEEEEECCSTTCEEC
T ss_pred EECCC---------------CcEEEEEccccCCcc
Confidence 98731 478889999999965
No 23
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.53 E-value=2.5e-07 Score=75.37 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=64.5
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.|.+|+++.|+|++++++|+||+++ +++++++.++...+. + . ++....+++||.|++||.+
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~--~--~-------------~~~~~~l~~GD~V~arVi~ 115 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMK--P--N-------------KKPNEVLDIGDAIIAKVLN 115 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCC--T--T-------------SCGGGTCCTTCEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccc--c--c-------------cchhcccCCCCEEEEEEEE
Confidence 67999999999999999999999998 788888887654211 1 1 2233479999999999999
Q ss_pred EecCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 156 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 156 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
++-. ..+..|+++++||.+
T Consensus 116 v~~~---------------~~i~LS~r~~~lG~L 134 (229)
T 2ba0_A 116 IDPK---------------MKVTLTMKDRICRPI 134 (229)
T ss_dssp ECTT---------------CCEEEECCSSSCEEE
T ss_pred ECCC---------------CcEEEEEccccCCcc
Confidence 8631 257779999999976
No 24
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4.3e-08 Score=94.31 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=68.9
Q ss_pred EEEEEEecCCCcEEEEEEEEEeCCeeEEEeC--ccceEEecCCCC--CCCCCcCcCCCCCeeeeEEEEeCC----ceeEE
Q 029485 72 FRLVVFRPFVGEIIAAKLKESDANGLRLSLG--FFEDIYVPSHLL--PSPSRSEPDPYGRYEVKWIWEFGD----TKYVI 143 (192)
Q Consensus 72 f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg--~~~~i~i~~~~~--~~~~~f~~d~~~~~~~~w~~~~~~----~~~~i 143 (192)
++|.+|++. |++++|+|++++++|+||.+. .++++++.+++. +++|.| |+..+. +.+++ .+..|
T Consensus 878 ~~~~~l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~f--de~~~~-----L~g~~~~g~~~~~~ 949 (977)
T 2wp8_J 878 YVGQVMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAF--DEVEYK-----LTFVPTNSDKPRDV 949 (977)
T ss_dssp HHHHHHHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEE--ETTTTE-----EEECCTTCCSCEEE
T ss_pred HHhhhhccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEE--cccccE-----EEeecCCCccCcEE
Confidence 345667788 999999999999999999996 479999999987 778889 999988 88876 36899
Q ss_pred cCCCEEEEEEEEEec
Q 029485 144 DGLDEIKFRVLSVNY 158 (192)
Q Consensus 144 ~~G~~VrvrV~~v~~ 158 (192)
++||+|+|+|.+++-
T Consensus 950 ~lGD~V~VkV~~vd~ 964 (977)
T 2wp8_J 950 YVFDKVEVQVRSVMD 964 (977)
T ss_dssp ETTCEEEEEECCCCC
T ss_pred ccCCEEEEEEEEEcC
Confidence 999999999999875
No 25
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.41 E-value=1e-06 Score=74.71 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=52.1
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeC---ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.+|+++.|+|++++++|+||+|+ ..++++|.+++..+ + . ++-...+++||.|+++|.+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~---~--i-------------~~~~~~~kvGd~V~VkVl~ 72 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRR---R--I-------------RSINKLIRIGRNECVKVIR 72 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCS---S--C-------------SCCTTTCSSSCEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcc---c--c-------------cCHHHhcCCCCEEEEEEEE
Confidence 458999999999999999999994 68999999987543 2 1 1122368999999999999
Q ss_pred EecCCC
Q 029485 156 VNYPSI 161 (192)
Q Consensus 156 v~~~~~ 161 (192)
++...+
T Consensus 73 vD~~~~ 78 (308)
T 1q8k_A 73 VDKEKG 78 (308)
T ss_dssp EETTTT
T ss_pred EeCCCC
Confidence 986543
No 26
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.41 E-value=1e-06 Score=73.56 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=52.8
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeC---ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.+|+++.|+|++++++|+||+|+ ..++++|.+++..+.. ++....+++||.|+++|.+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v------------------~~~~~~~kvGd~V~vkVi~ 70 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWV------------------RNIRDYLKEGQKVVAKVIR 70 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCC------------------SCGGGTCCTTCEEEEEEEE
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccc------------------cCHHhccCCCCEEEEEEEE
Confidence 668999999999999999999995 6899999998754321 1122368999999999999
Q ss_pred EecCCC
Q 029485 156 VNYPSI 161 (192)
Q Consensus 156 v~~~~~ 161 (192)
++..++
T Consensus 71 vD~~~~ 76 (275)
T 3aev_A 71 VDPRKG 76 (275)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 997554
No 27
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.38 E-value=4.6e-07 Score=74.02 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=64.9
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.|.+|+++.|+|++++++|+||+++ .++++++.++..... . ++.. .+-...+++||.|++||.+
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~--~--~~~~----------~~~~~~l~~GD~V~a~Vi~ 127 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP--F--NPAV----------DDMQSLLKVGDYIKAKVVA 127 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC--C--CTTT----------TCCTTSSCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCc--c--ccch----------hhHhhcCCCCCEEEEEEEE
Confidence 68999999999999999999999998 788988888765421 1 1111 1222379999999999999
Q ss_pred EecCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 156 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 156 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
++-. ..+..|+++++||.+
T Consensus 128 v~~~---------------~~i~LS~k~~~lG~l 146 (235)
T 2z0s_A 128 FDKT---------------RSPLLTVQGEGLGRI 146 (235)
T ss_dssp ECTT---------------SCEEEECCSSSCEEC
T ss_pred ECCC---------------CcEEEEEecccCccc
Confidence 8621 256778999999965
No 28
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.30 E-value=1.6e-07 Score=88.42 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=65.0
Q ss_pred EEEEEEecCCCcEEEEEEEEEeCCeeEEEeC--ccceEEecCCCC--CCCCCcCcCCCCCeeeeEEEEeCCc----eeEE
Q 029485 72 FRLVVFRPFVGEIIAAKLKESDANGLRLSLG--FFEDIYVPSHLL--PSPSRSEPDPYGRYEVKWIWEFGDT----KYVI 143 (192)
Q Consensus 72 f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg--~~~~i~i~~~~~--~~~~~f~~d~~~~~~~~w~~~~~~~----~~~i 143 (192)
++|.+|++.. ++++|+|++++++|+||.+. .++++++.+++. .++|.| |+..+. +.++++ +..|
T Consensus 661 ~~~~~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~f--d~~~~~-----l~g~~~~~~~~~~~ 732 (760)
T 2vnu_D 661 YVGQVMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAF--DEVEYK-----LTFVPTNSDKPRDV 732 (760)
T ss_dssp HHHHHHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEE--ETTTTE-----EEECCTTCSSCEEE
T ss_pred HHHHHhhcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEE--cccccE-----EEEecCCCccCcEE
Confidence 3456677877 99999999999999999996 479999999886 678889 999888 777765 6899
Q ss_pred cCCCEEEEEEEEEecC
Q 029485 144 DGLDEIKFRVLSVNYP 159 (192)
Q Consensus 144 ~~G~~VrvrV~~v~~~ 159 (192)
++||.|+|+|.+++..
T Consensus 733 ~lGD~V~VkV~~vd~~ 748 (760)
T 2vnu_D 733 YVFDKVEVQVRSVMDP 748 (760)
T ss_dssp ETTCEEEEEEC-----
T ss_pred ecCCEEEEEEEEEECc
Confidence 9999999999999864
No 29
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.29 E-value=2.4e-06 Score=66.82 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=61.0
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeCc--cceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLGF--FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg~--~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~ 154 (192)
|.|.+|+++.|+|+++..++.+|+++. .+++.+.++ | +... ++.+..+++||.|+.||.
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~-------~--~g~~----------k~~r~~l~~GDlV~ArV~ 63 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMA-------F--PNAS----------KKNRPTLQVGDLVYARVC 63 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTS-------S--TTCC----------SSSCCCCCTTCEEEEEEE
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHH-------C--Cchh----------hhhhccCCCCCEEEEEEE
Confidence 689999999999999999999999986 666665542 4 3211 345558999999999999
Q ss_pred EEecCCCcccccCCCCCCCCeEEEEE------ecCCCCcccc
Q 029485 155 SVNYPSIPIEQAEGSKPFAPMVINGS------IDYDGLGPVS 190 (192)
Q Consensus 155 ~v~~~~~~~~~~~~~~~~~~~~i~gs------~~~~gLG~is 190 (192)
+++.. +.+..| ++++|||+++
T Consensus 64 ~~~~~---------------~~~~Ltc~~~~~~r~~~lG~L~ 90 (175)
T 2ja9_A 64 TAEKE---------------LEAEIECFDSTTGRDAGFGILE 90 (175)
T ss_dssp ECCTT---------------SCCEEESSCTTTCSCTTCEEEC
T ss_pred EecCC---------------CceEEEecccccccccCCcCcC
Confidence 98642 123345 8889999874
No 30
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.24 E-value=1.3e-06 Score=68.41 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=57.2
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC-----------ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcC
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG-----------FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDG 145 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg-----------~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~ 145 (192)
+.|. |+++.|+|++++++|+||+++ .++++++.++.... + . ++-...+++
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~---~--~-------------~~~~~~~~~ 114 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEG---Y--V-------------KEISEAVGY 114 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSS---C--C-------------SSGGGTCCT
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcc---h--h-------------hCHhhcCCC
Confidence 6688 999999999999999999995 46788888766433 1 1 122237999
Q ss_pred CCEEEEEEEEEecCCCcccccCCCCCCCCeEEEEEecCCCCccc
Q 029485 146 LDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189 (192)
Q Consensus 146 G~~VrvrV~~v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~i 189 (192)
||.|++||++ + .+..|++++.||.+
T Consensus 115 GD~V~akVi~-----~--------------~i~LS~k~~~lGvv 139 (179)
T 3m7n_A 115 LDILKARVIG-----D--------------NLRLSTKEEEMGVL 139 (179)
T ss_dssp TCEEEEEEEE-----T--------------TTEEECCSTTCEEE
T ss_pred CCEEEEEEEC-----C--------------eEEEEEecCCCCEE
Confidence 9999999998 2 34567777777765
No 31
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.21 E-value=3.5e-06 Score=82.49 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=55.2
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
..+|++++|+|++++++|+||+|+ .++|++|.+++.++++.. ++.+ .+++||.|+|||.+++
T Consensus 900 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~--~p~~---------------v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRR--PANE---------------IYEIGKTYPAKVIYID 962 (1219)
T ss_dssp SCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCS--CSTT---------------TSCTTCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccC--CHHH---------------cCCCCCEEEEEEEEEE
Confidence 458999999999999999999996 679999999887764344 5532 6899999999999999
Q ss_pred cCCC
Q 029485 158 YPSI 161 (192)
Q Consensus 158 ~~~~ 161 (192)
....
T Consensus 963 ~~~~ 966 (1219)
T 3psi_A 963 YANI 966 (1219)
T ss_dssp GGGT
T ss_pred CCCC
Confidence 7543
No 32
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.18 E-value=1.2e-06 Score=74.14 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=62.8
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
|.|.+|+++.|+|++++++|++|+++ +.+++.+.+++..+.... . .... -...+....|++||.|+.||.+
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~i--R-~~~~-----~D~~~m~~~l~vGDlV~ArVis 162 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL--R-RRSA-----EDELAMRGFLQEGDLISAEVQA 162 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC---------------------CHHHHHHSCSSCEECCEEEE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhcccccee--e-cccc-----hhhhhhhccCCCCCEEEEEEEE
Confidence 68999999999999999999999998 677776665442211100 0 0000 0001224589999999999999
Q ss_pred EecCCCcccccCCCCCCCCeEEEEEecCCCCcccc
Q 029485 156 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVS 190 (192)
Q Consensus 156 v~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~is 190 (192)
++- + ..+..|+++++||+++
T Consensus 163 v~~-~--------------~~i~LStr~~~LGkL~ 182 (308)
T 2nn6_H 163 VFS-D--------------GAVSLHTRSLKYGKLG 182 (308)
T ss_dssp EET-T--------------TEEEEECCSSTTCEEC
T ss_pred cCC-C--------------CCEEEEecCcCCcccC
Confidence 972 1 3677899999999763
No 33
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.14 E-value=9.2e-07 Score=83.26 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=54.5
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
..+|++++|+|++|++||+||++| ..+|++|.+++.+ .+.+ |+ +..+++||.|+|||.+++
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd-~~v~--d~---------------~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSE-KFVK--DP---------------YEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCS-SCCS--CH---------------HHHCCTTCCCCCBEEEEE
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCc-cccC--Ch---------------hheeCCCCEEEEEEEEEE
Confidence 568999999999999999999998 5689999988764 3333 42 237999999999999999
Q ss_pred cCCCc
Q 029485 158 YPSIP 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
.....
T Consensus 714 ~~~~r 718 (785)
T 3bzc_A 714 IPRNR 718 (785)
T ss_dssp TTTTE
T ss_pred CCCCE
Confidence 86654
No 34
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.11 E-value=3.6e-07 Score=85.42 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEE
Q 029485 71 KFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEI 149 (192)
Q Consensus 71 ~f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~V 149 (192)
.++.+...+.+|++++|+|+++.++|+||+++ ..++++|.+++..+ + - ++.+..+++||.|
T Consensus 617 ~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~---~--v-------------~~~~~~~~vGd~V 678 (723)
T 3cdi_A 617 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK---R--V-------------EKVTDYLQMGQEV 678 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCc---c--c-------------cCcccccCCCCEE
Confidence 46667789999999999999999999999995 57899999977543 2 1 2223379999999
Q ss_pred EEEEEEEec
Q 029485 150 KFRVLSVNY 158 (192)
Q Consensus 150 rvrV~~v~~ 158 (192)
+|||.+++.
T Consensus 679 ~VkVi~vd~ 687 (723)
T 3cdi_A 679 PVKVLEVDR 687 (723)
T ss_dssp ---------
T ss_pred EEEEEEECC
Confidence 999999986
No 35
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.04 E-value=1.6e-06 Score=72.01 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=52.4
Q ss_pred ecCCCcEEEEEEEEEeCCeeEEEeC---ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEE
Q 029485 78 RPFVGEIIAAKLKESDANGLRLSLG---FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~Gifv~lg---~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~ 154 (192)
.|.+|+++.|+|+++.++|+||+++ ..++++|.+++..+ + - ++....+++||.|+|+|.
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~---~--v-------------~~~~~~~~vGd~V~VkVi 69 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSK---W--V-------------KNIRDVLKENRKVIVKVI 69 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCS---S--C-------------CCHHHHSCTTCEEEEEEC
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcc---c--c-------------cCHHHhCcCCCEEEEEEE
Confidence 4789999999999999999999994 57899999877433 2 1 122347999999999999
Q ss_pred EEecCCC
Q 029485 155 SVNYPSI 161 (192)
Q Consensus 155 ~v~~~~~ 161 (192)
+++..++
T Consensus 70 ~vd~~~g 76 (266)
T 3cw2_C 70 RVDRRKG 76 (266)
T ss_dssp CCCSSSC
T ss_pred EEeCCCC
Confidence 9975443
No 36
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.00 E-value=7.7e-07 Score=85.86 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
..+|+++.|+|++++++|+||.|+ .++|++|.+++.++++.+ ++. ..+++||.|+|||.+++
T Consensus 903 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~--~~~---------------~v~kvGd~V~vkVl~VD 965 (1030)
T 3psf_A 903 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRR--PAN---------------EIYEIGKTYPAKVIYID 965 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccC--CHH---------------HcCCCCCEEEEEEEEEE
Confidence 468999999999999999999996 678999998876653333 432 27999999999999998
Q ss_pred cCCC
Q 029485 158 YPSI 161 (192)
Q Consensus 158 ~~~~ 161 (192)
....
T Consensus 966 ~~~~ 969 (1030)
T 3psf_A 966 YANI 969 (1030)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 37
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.00 E-value=3.3e-07 Score=85.57 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=1.1
Q ss_pred EEEEEEEEecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCE
Q 029485 70 VKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE 148 (192)
Q Consensus 70 V~f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~ 148 (192)
..++.++..|.+|++++|+|++++++|+||++. ..++++|.+++..++ + ++.+..+++||.
T Consensus 626 ~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~r--v----------------~~~~d~~kvGD~ 687 (726)
T 4aid_A 626 DWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNER--V----------------AKPSDVLKEGQM 687 (726)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCccc--c----------------cCccccCCCCCE
Confidence 467888889999999999999999999999994 689999999875442 1 122338999999
Q ss_pred EEEEEEEEec
Q 029485 149 IKFRVLSVNY 158 (192)
Q Consensus 149 VrvrV~~v~~ 158 (192)
|+|||.+++.
T Consensus 688 V~VkVi~iD~ 697 (726)
T 4aid_A 688 VKVKLLGFDD 697 (726)
T ss_dssp ----------
T ss_pred EEEEEEEECC
Confidence 9999999985
No 38
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.83 E-value=3.2e-07 Score=86.13 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=34.2
Q ss_pred EEEEEE--EecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCC----CCCCCCcCcCCCCCeeeeEEEEeCCceeEE
Q 029485 71 KFRLVV--FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHL----LPSPSRSEPDPYGRYEVKWIWEFGDTKYVI 143 (192)
Q Consensus 71 ~f~~~v--f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~----~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i 143 (192)
..+.+. ..|.+|++++|+|++++++|+||++. ..++++|.+++ ..+ + - ++....+
T Consensus 655 ~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~---r--v-------------~~~~~~~ 716 (757)
T 1e3p_A 655 TINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGK---R--V-------------ENVEDVL 716 (757)
T ss_dssp ------------------CBEEECC-CSCEECCC---CCCCC-------------------------------------C
T ss_pred HHHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCC---c--c-------------cCccccc
Confidence 345566 78999999999999999999999994 58899999887 332 2 1 2223379
Q ss_pred cCCCEEEEEEEEEec
Q 029485 144 DGLDEIKFRVLSVNY 158 (192)
Q Consensus 144 ~~G~~VrvrV~~v~~ 158 (192)
++||.|+|||.+++.
T Consensus 717 ~vGd~V~VkVi~vd~ 731 (757)
T 1e3p_A 717 GVGQKVQVEIAEIDS 731 (757)
T ss_dssp CSSCBCCCCCCCCCS
T ss_pred CCCCEEEEEEEEECC
Confidence 999999999999986
No 39
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.65 E-value=2.2e-05 Score=55.83 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=52.6
Q ss_pred ccceeecCCCceeeEEEEEEEE---E---ecCCCcEEEEEEEEEeCCeeEEEe-CccceEEecCCCC
Q 029485 55 EGGFVYPGEGASTHTVKFRLVV---F---RPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLL 114 (192)
Q Consensus 55 ~~g~I~~~~g~~~~~V~f~~~v---f---~p~~gEv~~g~V~~v~~~Gifv~l-g~~~~i~i~~~~~ 114 (192)
+.|.|.+++|...+-|.++++. | +|..|+++++.|+.++++|+||+| +.+++++|.+++.
T Consensus 29 GfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~ 95 (101)
T 2bh8_A 29 GFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95 (101)
T ss_dssp TEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEE
T ss_pred CCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCc
Confidence 4578888888888889999998 4 699999999999999999999999 5789999998764
No 40
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.58 E-value=0.00032 Score=58.66 Aligned_cols=67 Identities=12% Similarity=-0.021 Sum_probs=54.0
Q ss_pred CCCcEEEEEEEEEeCCeeEE-EeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 80 FVGEIIAAKLKESDANGLRL-SLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 80 ~~gEv~~g~V~~v~~~Gifv-~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
.+|++++|+|.+++++|+|| .++ -+++++|.+++. + .+++||.|+++|.+++
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~--------~------------------~l~~Gd~v~~~V~~id 204 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY--------A------------------EPRLGQVLDARVIGFR 204 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS--------S------------------CCCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc--------c------------------cCCCCCEEEEEEEEEE
Confidence 48999999999999999999 994 688999888642 1 3689999999999998
Q ss_pred cCCCcccccCCCCCCCCeEEEEEecCCCC
Q 029485 158 YPSIPIEQAEGSKPFAPMVINGSIDYDGL 186 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~i~gs~~~~gL 186 (192)
..++ +|-.|+++.+-
T Consensus 205 ~~d~--------------kI~LSlk~~~~ 219 (285)
T 3go5_A 205 EVDR--------------TLNLSLKPRSF 219 (285)
T ss_dssp TTTT--------------EEEEECSCCCC
T ss_pred CCCC--------------eEEEEeChhhh
Confidence 6443 66777766543
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.31 E-value=0.00048 Score=59.07 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=49.2
Q ss_pred ecCCCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 78 RPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
+...|++++|+|..+++.|+||.+|-.+++++.++++|. . .|++||.|++.|.+++
T Consensus 131 ~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~ip~-----------E-------------~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 131 SELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPG-----------E-------------EIKAGDLVKVYIIDVV 186 (344)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSCTT-----------C-------------CCCTTCEEEEEEEEEE
T ss_pred hhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHcCCC-----------c-------------CCCCCCEEEEEEEEEE
Confidence 455799999999999999999999988888888766532 1 4689999999999998
Q ss_pred cCC
Q 029485 158 YPS 160 (192)
Q Consensus 158 ~~~ 160 (192)
-..
T Consensus 187 ~~~ 189 (344)
T 1hh2_P 187 KTT 189 (344)
T ss_dssp EET
T ss_pred cCC
Confidence 543
No 42
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.04 E-value=0.00089 Score=57.74 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=50.6
Q ss_pred EecCCCcEEEEEEEE----EeCCeeEEEeCc----cceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCE
Q 029485 77 FRPFVGEIIAAKLKE----SDANGLRLSLGF----FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE 148 (192)
Q Consensus 77 f~p~~gEv~~g~V~~----v~~~Gifv~lg~----~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~ 148 (192)
|+...||++.|+|.. +++.+++|.+|- .++++.+++++|. . .|++||.
T Consensus 126 f~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~-----------E-------------~~~~GDr 181 (366)
T 1k0r_A 126 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG-----------E-------------SYEHGNR 181 (366)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTT-----------C-------------CCCTTCE
T ss_pred HHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCC-----------c-------------cCCCCCE
Confidence 678899999999999 999999999997 8888887776653 1 5789999
Q ss_pred EEEEEEEEecCC
Q 029485 149 IKFRVLSVNYPS 160 (192)
Q Consensus 149 VrvrV~~v~~~~ 160 (192)
||+-|.+++-..
T Consensus 182 VkvyV~~V~~~~ 193 (366)
T 1k0r_A 182 LRCYVVGVTRGA 193 (366)
T ss_dssp EEEEEEEEECCS
T ss_pred EEEEEEEEecCC
Confidence 999999998654
No 43
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.87 E-value=0.0026 Score=53.24 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=56.8
Q ss_pred EecCCCcEEEEEEEEEeCCeeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEE
Q 029485 77 FRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155 (192)
Q Consensus 77 f~p~~gEv~~g~V~~v~~~Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~ 155 (192)
+.|.+|+++.|+|+.++.....|+++ ++.+++...+ | .... ++....|++||.|+.||.+
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~-------f--~Gat----------k~~r~~f~~GDlV~ArV~s 183 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLS-------F--EGAT----------KRNRPNVQVGDLIYGQFVV 183 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCS-------S--SCCS----------SCSSSSSCTTCEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhh-------c--Ccch----------hhhhhhcCCCCEEEEEEEE
Confidence 67999999999999999999999997 4444444332 3 2111 2233479999999999999
Q ss_pred EecCCCcccccCCCCCCCCeEEEEEe-----cCCCCccc
Q 029485 156 VNYPSIPIEQAEGSKPFAPMVINGSI-----DYDGLGPV 189 (192)
Q Consensus 156 v~~~~~~~~~~~~~~~~~~~~i~gs~-----~~~gLG~i 189 (192)
+.-. +....|+ ++.+||++
T Consensus 184 ~~~~---------------~~~eLsc~~~~~k~~~lG~L 207 (289)
T 2nn6_G 184 ANKD---------------MEPEMVCIDSCGRANGMGVI 207 (289)
T ss_dssp CCTT---------------SCCEEECSBTTTTBCCCCSC
T ss_pred cCCC---------------CceEEEecccccccccCCEe
Confidence 7521 1233466 78899987
No 44
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.85 E-value=0.0033 Score=51.52 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=49.2
Q ss_pred EecCCCcEEEEEEEE----EeCCeeEEEeCc----cceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCE
Q 029485 77 FRPFVGEIIAAKLKE----SDANGLRLSLGF----FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE 148 (192)
Q Consensus 77 f~p~~gEv~~g~V~~----v~~~Gifv~lg~----~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~ 148 (192)
|+...||++.|+|.. +++..++|.+|- .++++.+++++|. . .|++||.
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~-----------E-------------~~~~GDr 58 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG-----------E-------------SYEHGNR 58 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT-----------C-------------CCCTTCE
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC-----------c-------------cCCCCCE
Confidence 788999999999999 899999999997 7776666665542 1 5789999
Q ss_pred EEEEEEEEecCC
Q 029485 149 IKFRVLSVNYPS 160 (192)
Q Consensus 149 VrvrV~~v~~~~ 160 (192)
||+-|.+++-..
T Consensus 59 IkayV~~V~~~~ 70 (251)
T 2asb_A 59 LRCYVVGVTRGA 70 (251)
T ss_dssp EEEEEEEEECCS
T ss_pred EEEEEEEEEcCC
Confidence 999999998654
No 45
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.39 E-value=0.0083 Score=50.05 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=27.9
Q ss_pred CCCcEEEEEEEEEe-CCeeEEEeCc--cceEEecCCC
Q 029485 80 FVGEIIAAKLKESD-ANGLRLSLGF--FEDIYVPSHL 113 (192)
Q Consensus 80 ~~gEv~~g~V~~v~-~~Gifv~lg~--~~~i~i~~~~ 113 (192)
.+|++..|+|++++ ++|+||.+|. .+++++.+++
T Consensus 68 ~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel 104 (285)
T 3go5_A 68 TQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDIL 104 (285)
T ss_dssp CSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGS
T ss_pred cCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHC
Confidence 47999999999999 7999999995 6665555543
No 46
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=94.34 E-value=0.071 Score=47.94 Aligned_cols=72 Identities=8% Similarity=-0.053 Sum_probs=49.7
Q ss_pred ecCCCcEEEEEEEEEeCC--eeEEEeC-ccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEe-CCceeEEcCCCEEEEEE
Q 029485 78 RPFVGEIIAAKLKESDAN--GLRLSLG-FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRV 153 (192)
Q Consensus 78 ~p~~gEv~~g~V~~v~~~--Gifv~lg-~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~-~~~~~~i~~G~~VrvrV 153 (192)
.+.+|.++.|+|+++.++ |+||++| --+++++.++..+++ + ..... ... .+-...++.||.|.|+|
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~--~--~~~~~------~~~~~~i~d~lk~Gq~VlVQV 111 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY--F--PANYS------AHGRPNIKDVLREGQEVIVQI 111 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGG--C--C-------------CCCGGGTCCTTCEEEEEE
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhh--h--ccccc------cccccchhhhccCCCEEEEEE
Confidence 467899999999999999 9999998 446788888774432 2 11100 000 11223588999999999
Q ss_pred EEEecC
Q 029485 154 LSVNYP 159 (192)
Q Consensus 154 ~~v~~~ 159 (192)
......
T Consensus 112 ~Ke~~g 117 (517)
T 2bx2_L 112 DKEERG 117 (517)
T ss_dssp EECCCT
T ss_pred Eeeccc
Confidence 996643
No 47
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=86.97 E-value=0.11 Score=46.01 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=42.4
Q ss_pred EEEEEEecCCCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEE
Q 029485 72 FRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKF 151 (192)
Q Consensus 72 f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~Vrv 151 (192)
++|.+|+...|++++|+|..+... +++++.+++. + | .. . +..|++||.|+|
T Consensus 394 ~~~~~l~~~~g~~f~g~vv~l~~~---------~glV~v~~l~-----~--d---~~------~----~~~~~lGd~V~V 444 (469)
T 2r7d_A 394 HTLRFIAAQPERVWDAVVVDRRGA---------QATLLIPDLA-----F--D---VQ------V----NTPAAPGTALQV 444 (469)
T ss_dssp HHHHHHHTCTTCCEEEEEEEEETT---------EEEEEEGGGT-----E--E---EE------E----ECCCCTTCEEEE
T ss_pred HHHHHHHhCCCCEEEEEEEEEeCc---------EEEEEECCCC-----e--E---Ee------c----CCcCCCCCEEEE
Confidence 345667889999999998775532 2444444432 1 2 11 1 237999999999
Q ss_pred EEEEEecCCCc
Q 029485 152 RVLSVNYPSIP 162 (192)
Q Consensus 152 rV~~v~~~~~~ 162 (192)
||.+++..++.
T Consensus 445 ~v~~vd~~~~~ 455 (469)
T 2r7d_A 445 QFADIDLPQMR 455 (469)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEccCCCE
Confidence 99999987763
No 48
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=62.26 E-value=7.3 Score=25.94 Aligned_cols=55 Identities=5% Similarity=-0.053 Sum_probs=33.7
Q ss_pred EEEEEEEEeCCeeEEEeCccceEEecCCCCCC-CCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 85 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPS-PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 85 ~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~-~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
..|+|.+++...+-++-|++..+= +|. -..| .-.... .-..++.||.|+|.+...
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI~~l~-----wPaMTM~F--~v~~~~----------~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAIPSAQ-----WGAMTMEF--AAPPAG----------LPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp EEEEEEECCSSEEEEEECCCTTTT-----CCCEEEEE--ECCTTC----------CCSSCSTTCEEEEEEEEE
T ss_pred EeEEEEEEccccEEEecCCccccC-----CCceEEEE--EcCChh----------HhhcCCCCCEEEEEEEEC
Confidence 489999999998666667774321 221 1223 111111 122689999999999764
No 49
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=51.64 E-value=33 Score=23.38 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=38.5
Q ss_pred cCCCcEEEEEEEEEeCCeeEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCC-ceeEEcCCCEEEEE
Q 029485 79 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFR 152 (192)
Q Consensus 79 p~~gEv~~g~V~~v~~~Gifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~-~~~~i~~G~~Vrvr 152 (192)
|..|+.+-|+|+++++.++.+.+.-=+...++.+-|.=--.| .. .. +. -...++.||.|+|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~--~~--~~--------~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRF--LS--ND--------PKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGG--TT--TC--------TTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhc--cc--cc--------ccchhccCCCCCEEEEE
Confidence 556889999999999999998883213344555333210011 10 00 12 23479999999998
No 50
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=47.65 E-value=20 Score=23.59 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=33.9
Q ss_pred EEEEEEEEEeCCe--eEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 84 IIAAKLKESDANG--LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 84 v~~g~V~~v~~~G--ifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
...|+|++++... +-++-|++..+=-|..- ..| .-.... .-..++.||.|+|.+...
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMT----M~F--~v~~~~----------~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMT----MRF--TITPQT----------KMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEE----EEE--ECCTTC----------EECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceE----EEE--EccChh----------hhhcCCCCCEEEEEEEEe
Confidence 3789999999876 55555777542212211 223 211111 122689999999999764
No 51
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=47.43 E-value=13 Score=26.10 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.9
Q ss_pred cCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEEe
Q 029485 122 PDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 122 ~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
.....+. |.+++.+..++.||+|...+.-..
T Consensus 52 t~~~~Gr-----W~~~d~~~~lk~GD~I~Ywv~V~~ 82 (107)
T 3ie4_A 52 VKAKNGR-----WTFRDRITALKPGDTLYYWTYVIY 82 (107)
T ss_dssp CCCBTTE-----EEEEESSCCCCTTCEEEEEEEEEE
T ss_pred eEecCCE-----EEEECCCceeCCCCEEEEEEEEEE
Confidence 3555666 667778889999999999887653
No 52
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=45.91 E-value=21 Score=23.90 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=33.8
Q ss_pred EEEEEEEEEeCCe--eEEEeCccceEEecCCCCCCCCCcCcCCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 84 IIAAKLKESDANG--LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 84 v~~g~V~~v~~~G--ifv~lg~~~~i~i~~~~~~~~~~f~~d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
...|+|++++... +-++-|++..+=-|.-- ..| .-.... . -..++.||.|+|.+...
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMT----M~F--~v~~~~-----~-----l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMT----MRF--TITPQT-----K-----MSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEE----EEE--ECCTTC-----E-----ECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceE----EEE--EcCChh-----h-----hhcCCCCCEEEEEEEEe
Confidence 3789999999875 54555777542212111 223 211111 1 12689999999999764
No 53
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=40.89 E-value=19 Score=18.45 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHhHh
Q 029485 21 PLNEAIKLELENVF 34 (192)
Q Consensus 21 ~~~~~i~~~L~~k~ 34 (192)
-++..|++.|..+|
T Consensus 12 gleaiirkalmg~y 25 (26)
T 2ovm_B 12 GLEDIIRKALMGSF 25 (26)
T ss_pred CHHHHHHHHHhhcc
Confidence 48899999998776
No 54
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=33.55 E-value=32 Score=22.94 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.5
Q ss_pred eeEEcCCCEEEEEEEEEecC
Q 029485 140 KYVIDGLDEIKFRVLSVNYP 159 (192)
Q Consensus 140 ~~~i~~G~~VrvrV~~v~~~ 159 (192)
+-.|++||+|++|+...+.+
T Consensus 10 r~iYrPGetV~~~~~~~~~~ 29 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMDEN 29 (102)
T ss_dssp CSEECTTCEEEEEEEEECGG
T ss_pred CcccCCCCEEEEEEEEECCC
Confidence 34899999999999987643
No 55
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=27.74 E-value=93 Score=22.37 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=27.1
Q ss_pred ceeeEEEEEEEEEecCCCcEEEEEEEEEeCCeeEEEeC
Q 029485 65 ASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102 (192)
Q Consensus 65 ~~~~~V~f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg 102 (192)
+..+.++..+.+..+ |..+.|++.+++..|+++.+.
T Consensus 31 ~~Rv~~~~~~~l~~~--g~~~~~~~~DiSl~G~~I~~~ 66 (145)
T 2l74_A 31 FHRIAFDADSEILQG--ERRWEVLLHDVSLHGILVGQP 66 (145)
T ss_dssp SCCCCCCEEEEEEET--TEEEEEEEEEEETTEEEEECC
T ss_pred ceeEEEeeEEEEEEC--CEEEEEEEEEeccCCCEEEcC
Confidence 333445555555555 999999999999999999874
No 56
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=26.56 E-value=77 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.5
Q ss_pred eCCceeEEcCCCEEEEEEEEEe
Q 029485 136 FGDTKYVIDGLDEIKFRVLSVN 157 (192)
Q Consensus 136 ~~~~~~~i~~G~~VrvrV~~v~ 157 (192)
+.-....++.|+.||+++.+.+
T Consensus 35 f~p~~i~v~~G~~V~~~~~n~d 56 (112)
T 1iby_A 35 NEPETLVVKKGDAVKVVVENKS 56 (112)
T ss_dssp EESCEEEEETTCEEEEEEEECS
T ss_pred EcCCEEEEeCCCEEEEEEEECC
Confidence 4455668888999988887755
No 57
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=26.02 E-value=53 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.5
Q ss_pred ceeEEcCCCEEEEEEEEEec
Q 029485 139 TKYVIDGLDEIKFRVLSVNY 158 (192)
Q Consensus 139 ~~~~i~~G~~VrvrV~~v~~ 158 (192)
+...+..|+.|||+|.+.+.
T Consensus 41 n~l~lP~g~~V~~~lTS~DV 60 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNSV 60 (205)
T ss_dssp SEEEEETTSCEEEEEEESSS
T ss_pred ceEEEeCCCEEEEEEecCCc
Confidence 57899999999999998664
No 58
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=24.75 E-value=34 Score=23.83 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 123 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 123 d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
...... |.+++.+..++.||+|...+.-.
T Consensus 54 ~~~~Gr-----W~~~d~~~~lk~GD~i~Yw~~V~ 82 (106)
T 3aqy_A 54 KPKEGR-----WTFRDRNVKLKLGDKIYFWTYVI 82 (106)
T ss_dssp CCBTTE-----EEEEECSCCCCTTCEEEEEEEEE
T ss_pred EecCCE-----EEEECCceEeCCCCEEEEEEEEE
Confidence 455566 66677788999999999998664
No 59
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=22.77 E-value=43 Score=24.23 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCCCeeeeEEEEeCCceeEEcCCCEEEEEEEEE
Q 029485 123 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156 (192)
Q Consensus 123 d~~~~~~~~w~~~~~~~~~~i~~G~~VrvrV~~v 156 (192)
...... |.+++.+..++.||+|...+.-.
T Consensus 63 ~~~~Gr-----W~~~d~~~~Lk~GD~IyYw~~V~ 91 (130)
T 2kha_A 63 KPKEGR-----WTFRDRNAKLKLGDKIYFWTYVI 91 (130)
T ss_dssp SCSSSE-----EEEEETTCCCCTTCEEEEEEEEE
T ss_pred eecCCE-----EEEECCceeeCCCCEEEEEEEEE
Confidence 455566 66777788999999999999875
No 60
>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1
Probab=21.47 E-value=1e+02 Score=22.28 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=25.5
Q ss_pred eEEEEEEEEEecCCCcEEEEEEEEEeCCeeEEEeC
Q 029485 68 HTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102 (192)
Q Consensus 68 ~~V~f~~~vf~p~~gEv~~g~V~~v~~~Gifv~lg 102 (192)
+.++..+.+..+ |..+.|++.+++..|+.+.+.
T Consensus 36 v~~~~~~~l~~~--g~~~~~~~~DiS~~G~~I~~~ 68 (149)
T 1ywu_A 36 IAFDADSEILQG--ERRWEVLLHDVSLHGILVGQP 68 (149)
T ss_dssp SCCSCEEEEEET--TEEEEEEEEEECSSEEEEECS
T ss_pred EEEeeEEEEEEC--CEEEEEEEEEeccccCEEEcC
Confidence 444444444455 999999999999999999974
Done!