BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029487
MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASK
WGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTP
PELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH
EVEFWNMSRGTA

High Scoring Gene Products

Symbol, full name Information P value
AT3G16990 protein from Arabidopsis thaliana 1.8e-55

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029487
        (192 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2086052 - symbol:AT3G16990 "AT3G16990" species...   572  1.8e-55   1


>TAIR|locus:2086052 [details] [associations]
            symbol:AT3G16990 "AT3G16990" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AB026636 Gene3D:1.20.910.10
            InterPro:IPR016084 SUPFAM:SSF48613 InterPro:IPR026285
            InterPro:IPR004305 PANTHER:PTHR25987:SF0 Pfam:PF03070
            PIRSF:PIRSF003170 EMBL:AF361592 EMBL:AY058225 EMBL:AY087098
            IPI:IPI00523089 IPI:IPI00555537 RefSeq:NP_188324.1 UniGene:At.26230
            PDB:2F2G PDB:2Q4X PDBsum:2F2G PDBsum:2Q4X ProteinModelPortal:Q9ASY9
            SMR:Q9ASY9 STRING:Q9ASY9 PaxDb:Q9ASY9 PRIDE:Q9ASY9
            EnsemblPlants:AT3G16990.1 GeneID:820955 KEGG:ath:AT3G16990
            TAIR:At3g16990 eggNOG:NOG286687 HOGENOM:HOG000225158
            InParanoid:Q9ASY9 OMA:GATRHPF EvolutionaryTrace:Q9ASY9
            Genevestigator:Q9ASY9 GermOnline:AT3G16990 Uniprot:Q9ASY9
        Length = 221

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 116/186 (62%), Positives = 135/186 (72%)

Query:     5 LGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVE 64
             LGQDY+FVR FV F ASVL++A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+
Sbjct:    44 LGQDYLFVRRFVPFVASVLIRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVD 102

Query:    65 LSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQ 124
              S  VPQ+ANQ Y RFLE LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL 
Sbjct:   103 FSTVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELT 162

Query:   125 EVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 184
               C RWGNDGF QYC S+K IA R LE AS + ++G+A +DVL       +RVLE EV F
Sbjct:   163 GACHRWGNDGFKQYCSSVKNIAERCLENASGE-VLGEA-EDVL-------VRVLELEVAF 213

Query:   185 WNMSRG 190
             W MSRG
Sbjct:   214 WEMSRG 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       192   0.00096  110 3  11 22  0.46    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  188 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.53u 0.09s 18.62t   Elapsed:  00:00:01
  Total cpu time:  18.53u 0.09s 18.62t   Elapsed:  00:00:01
  Start:  Fri May 10 23:15:07 2013   End:  Fri May 10 23:15:08 2013

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