BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029487
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F2G|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g16990
pdb|2F2G|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g16990
pdb|2Q4X|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
pdb|2Q4X|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
Length = 221
Score = 219 bits (559), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/186 (61%), Positives = 129/186 (69%), Gaps = 10/186 (5%)
Query: 5 LGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVE 64
LGQDY+FVR FV F ASVL++A K+S +S D EV+LGG+A L+DEI WFK+E SKW V+
Sbjct: 44 LGQDYLFVRRFVPFVASVLIRACKDSGESS-DXEVVLGGIASLNDEIEWFKREGSKWDVD 102
Query: 65 LSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQ 124
S VPQ+ANQ Y RFLE L S EV Y V T FWAIEAVYQESFAHCLE TP EL
Sbjct: 103 FSTVVPQRANQEYGRFLEDLXSSEVKYPVIXTAFWAIEAVYQESFAHCLEDGNKTPVELT 162
Query: 125 EVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 184
C RWGNDGF QYC S+K IA R LE AS +VL +AE L+RVLE EV F
Sbjct: 163 GACHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAF 213
Query: 185 WNMSRG 190
W SRG
Sbjct: 214 WEXSRG 219
>pdb|1RTW|A Chain A, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|B Chain B, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|C Chain C, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|D Chain D, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
Length = 220
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 18/186 (9%)
Query: 5 LGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVE 64
L DY FV+ + F A + KA DD + + E+ F+K+A + G+
Sbjct: 40 LVNDYYFVKNALRFXALLXAKA---PDDL---LPFFAESIYYISKELEXFEKKAQELGIS 93
Query: 65 LSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQ 124
L+ + +A + Y +L S+ S + T + E Y E++ E P Q
Sbjct: 94 LNGEIDWRA-KSYVNYLLSVASL-GSFLEGFTALYCEEKAYYEAWKWVRENLKERSP-YQ 150
Query: 125 EVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 184
E W + FG+Y ++KI N L EK + + +V K+ V + E+ F
Sbjct: 151 EFINHWSSQEFGEYVKRIEKILNSLAEKHGE--FEKERAREVFKE-------VSKFELIF 201
Query: 185 WNMSRG 190
W+++ G
Sbjct: 202 WDIAYG 207
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 135 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 176
GQ H I N +LE+ + D ++GK VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERQTPDYVLGKIRAGVLEQGMVDLLR 57
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 135 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 176
GQ H I N +LE+ + D ++G+ VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERTTPDYVLGRIRAGVLEQGMVDLLR 57
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 135 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 176
GQ H I N +LE+ + D ++G+ VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERQTPDYVLGRIRGGVLEQGMVDLLR 57
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 1 MQFTLGQDYIFVREFVAFAASVLVKAWKES--DDSKGDTEVILGGMAGLHDEIAWFKKEA 58
+F + QDY+F+ E+ A +VKA E+ + + IL +H+ + +E
Sbjct: 43 FRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNH---YIREL 99
Query: 59 SKWGVELSETVPQKANQVYCRFL 81
EL P AN+ Y ++
Sbjct: 100 QITQKELQNACPTLANKSYTSYM 122
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 95 ITVFWAIEAVYQESFAHCLEPDTNTPPE-LQEVCQRWGNDGFGQYCHSLKKI 145
I + ++ + E+F HC E DT T PE + V DG YC+SL +
Sbjct: 119 IPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVA-----DGXFSYCYSLHTV 165
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 40 ILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDY 91
++ G G HD +A E G+++SE+ KAN+ Y SP+ +Y
Sbjct: 71 LVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGS------SPKAEY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,912,270
Number of Sequences: 62578
Number of extensions: 237652
Number of successful extensions: 645
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 10
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)