BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029487
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SWB6|PM36_SOYBN Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1
Length = 229
Score = 265 bits (677), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/187 (68%), Positives = 147/187 (78%), Gaps = 10/187 (5%)
Query: 5 LGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVE 64
L QDY+FVR FV F ASVL+KAWKESD S GD EVILGGMA L DEI+WFK EA+KWG+
Sbjct: 52 LAQDYLFVRAFVPFVASVLIKAWKESDCS-GDMEVILGGMASLEDEISWFKTEANKWGIS 110
Query: 65 LSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQ 124
LS+ VPQ+AN+ YC LESLMSP+ +YTVAIT FWAIE VYQESFAHC+E + TPPEL+
Sbjct: 111 LSDVVPQQANKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELK 170
Query: 125 EVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 184
E C RWGN+ FG+YC SL+ IANR L+KAS D+ LKKAEV L+ VLEHEVEF
Sbjct: 171 ETCVRWGNEAFGKYCQSLQNIANRCLQKAS---------DEELKKAEVMLLSVLEHEVEF 221
Query: 185 WNMSRGT 191
WNMSRG
Sbjct: 222 WNMSRGN 228
>sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog OS=Arabidopsis thaliana
GN=At3g16990 PE=1 SV=3
Length = 221
Score = 226 bits (576), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/186 (62%), Positives = 132/186 (70%), Gaps = 10/186 (5%)
Query: 5 LGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVE 64
LGQDY+FVR FV F ASVL++A K+S +S D EV+LGG+A L+DEI WFK+E SKW V+
Sbjct: 44 LGQDYLFVRRFVPFVASVLIRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVD 102
Query: 65 LSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQ 124
S VPQ+ANQ Y RFLE LMS EV Y V +T FWAIEAVYQESFAHCLE TP EL
Sbjct: 103 FSTVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELT 162
Query: 125 EVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 184
C RWGNDGF QYC S+K IA R LE AS +VL +AE L+RVLE EV F
Sbjct: 163 GACHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAF 213
Query: 185 WNMSRG 190
W MSRG
Sbjct: 214 WEMSRG 219
>sp|Q2JUK1|RF1_SYNJA Peptide chain release factor 1 OS=Synechococcus sp. (strain
JA-3-3Ab) GN=prfA PE=3 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 101 IEAVYQESFAHCLEPDTNT-PPELQEVCQ-RWGNDGFGQYCHSLKKIANRLLEKASDDLI 158
+EA +QE +PD T P ELQ + + R + Q H +K+ L K +++L+
Sbjct: 13 VEATFQELTVRLADPDVATDPAELQRIAKARSSLEATVQTFHEWQKLTREL--KQTEELL 70
Query: 159 MGKAGDD----VLKKAEVELIRV 177
A DD + +AE+E +RV
Sbjct: 71 REVASDDPELEAMARAELEQLRV 93
>sp|Q01H90|LDL3_ORYSI Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa
subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1
Length = 811
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 120 PPELQEVCQRWGNDGF--GQYCH 140
P LQ VC RWG D F G Y H
Sbjct: 560 PDPLQSVCTRWGTDSFSLGSYSH 582
>sp|Q7XUR2|LDL3_ORYSJ Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa
subsp. japonica GN=Os04g0560300 PE=2 SV=2
Length = 811
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 120 PPELQEVCQRWGNDGF--GQYCH 140
P LQ VC RWG D F G Y H
Sbjct: 560 PDPLQSVCTRWGTDSFSLGSYSH 582
>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis
thaliana GN=FLD PE=1 SV=1
Length = 789
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 118 NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDD 156
N P LQ VC RWG D F SL +N + + DD
Sbjct: 544 NVPDPLQTVCTRWGGDPF-----SLGSYSNVAVGASGDD 577
>sp|Q9H2G2|SLK_HUMAN STE20-like serine/threonine-protein kinase OS=Homo sapiens GN=SLK
PE=1 SV=1
Length = 1235
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 12 VREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQ 71
R+F+ V V K DS TE + E+ + +KE + +L+ + Q
Sbjct: 795 TRKFIVDGVEVSVTTSKIVTDSDSKTEELRFLRRQELRELRFLQKEEQRAQQQLNSKLQQ 854
Query: 72 KANQVYCRFLESLMSPEVDYTVAI 95
+ Q++ RF + +MS + Y I
Sbjct: 855 QREQIFRRFEQEMMSKKRQYDQEI 878
>sp|Q3JCS0|CYSG_NITOC Siroheme synthase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysG PE=3 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 29 ESDDSKGDTEVILGGMAGLHDEIAWFK 55
+ +D T VI+GG+ L+ ++AWFK
Sbjct: 432 QGEDIHAPTLVIIGGVVALYPQLAWFK 458
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis
thaliana GN=At1g06650 PE=2 SV=1
Length = 369
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 48 HDEIAWFKKEASKWG----------VELSETVP-------QKANQVYCRFLESLMSPEVD 90
++ I K+ A+KWG +EL E + +++ +V F S
Sbjct: 81 NNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFL 140
Query: 91 YTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLL 150
Y +F + A ++++F+ + PDT P +L E+C+ D +Y + + L
Sbjct: 141 YLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPEICR----DIMMEYSKQVMNLGKFLF 196
Query: 151 EKASDDL 157
E S+ L
Sbjct: 197 ELLSEAL 203
>sp|Q2JL68|RF1_SYNJB Peptide chain release factor 1 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=prfA PE=3 SV=1
Length = 360
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 101 IEAVYQESFAHCLEPDTNT-PPELQEVCQ-RWGNDGFGQYCHSLKKIANRLLEKASDDLI 158
+EA +QE +PD T P ELQ + + R + Q H +K+ NR L++ +++L+
Sbjct: 13 VEATFQELTVRLADPDVATDPAELQRIAKARSSLEATVQAFHDWQKL-NRDLQQ-TEELL 70
Query: 159 MGKAGD---DVLKKAEVELIR 176
A D + + +AE+E +R
Sbjct: 71 RESASDPELEAMARAELEQLR 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,803,958
Number of Sequences: 539616
Number of extensions: 2933661
Number of successful extensions: 7093
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7083
Number of HSP's gapped (non-prelim): 15
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)