Query 029487
Match_columns 192
No_of_seqs 107 out of 839
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 4.5E-46 9.8E-51 298.6 20.6 175 1-191 37-217 (218)
2 PRK14713 multifunctional hydro 100.0 1.7E-40 3.7E-45 298.5 21.8 173 1-192 354-529 (530)
3 PRK09517 multifunctional thiam 100.0 1.7E-39 3.8E-44 301.8 21.6 170 1-191 580-752 (755)
4 PF03070 TENA_THI-4: TENA/THI- 100.0 3.5E-39 7.5E-44 257.8 18.1 174 1-190 30-209 (210)
5 PTZ00347 phosphomethylpyrimidi 100.0 1.3E-36 2.7E-41 272.1 20.4 168 1-191 47-219 (504)
6 KOG2598 Phosphomethylpyrimidin 99.9 7.4E-23 1.6E-27 175.0 15.3 170 1-190 347-521 (523)
7 COG5424 Pyrroloquinoline quino 97.3 0.007 1.5E-07 49.1 12.2 167 2-190 44-227 (242)
8 PRK05157 pyrroloquinoline quin 97.0 0.081 1.8E-06 43.6 15.5 154 2-189 46-228 (246)
9 TIGR02111 PQQ_syn_pqqC coenzym 96.5 0.37 8E-06 39.5 16.2 154 2-189 39-221 (239)
10 CHL00168 pbsA heme oxygenase; 87.9 10 0.00022 31.1 10.6 82 62-149 89-179 (238)
11 COG3143 CheZ Chemotaxis protei 76.4 37 0.00079 27.0 9.8 89 56-154 33-129 (217)
12 PF14518 Haem_oxygenas_2: Iron 74.5 5.9 0.00013 27.6 4.1 36 51-86 19-58 (106)
13 PF12981 DUF3865: Domain of Un 71.4 54 0.0012 26.6 15.3 131 41-187 73-225 (231)
14 cd00232 HemeO Heme oxygenase c 59.8 80 0.0017 24.5 8.4 86 59-149 82-174 (203)
15 PRK13689 hypothetical protein; 56.8 45 0.00097 22.3 5.2 50 128-179 5-66 (75)
16 PF02609 Exonuc_VII_S: Exonucl 50.0 58 0.0013 19.9 5.3 35 135-180 1-35 (53)
17 PRK11166 chemotaxis regulator 47.5 1.5E+02 0.0033 24.0 10.4 87 56-152 30-124 (214)
18 PF01320 Colicin_Pyocin: Colic 42.5 37 0.0008 23.3 3.2 40 127-180 7-46 (85)
19 COG1722 XseB Exonuclease VII s 40.2 1.1E+02 0.0023 20.8 5.2 36 134-180 11-46 (81)
20 PRK14067 exodeoxyribonuclease 38.3 98 0.0021 20.9 4.8 37 133-180 7-43 (80)
21 PRK14068 exodeoxyribonuclease 37.2 1.2E+02 0.0026 20.2 5.0 37 133-180 6-42 (76)
22 PF09712 PHA_synth_III_E: Poly 35.6 2.7E+02 0.0059 23.5 11.8 106 74-183 168-287 (293)
23 TIGR01834 PHA_synth_III_E poly 35.5 2.9E+02 0.0063 23.8 10.0 63 121-183 232-304 (320)
24 PRK00977 exodeoxyribonuclease 34.6 1.4E+02 0.0029 20.1 5.0 37 133-180 10-46 (80)
25 PRK14064 exodeoxyribonuclease 34.4 1.4E+02 0.0031 19.8 5.0 37 133-180 6-42 (75)
26 TIGR01280 xseB exodeoxyribonuc 32.6 1.4E+02 0.0031 19.3 5.0 36 134-180 2-37 (67)
27 PF15565 Imm16: Immunity prote 32.4 83 0.0018 22.5 3.8 38 138-184 14-51 (106)
28 PRK14066 exodeoxyribonuclease 32.1 1.6E+02 0.0034 19.6 5.0 36 134-180 5-40 (75)
29 PF01213 CAP_N: Adenylate cycl 29.2 3E+02 0.0064 23.6 7.3 26 119-149 177-202 (312)
30 COG5398 Heme oxygenase [Inorga 29.2 2.4E+02 0.0052 23.0 6.3 19 68-86 94-112 (238)
31 PF06757 Ins_allergen_rp: Inse 28.6 2.7E+02 0.0059 21.4 10.3 43 92-142 110-152 (179)
32 PRK14069 exodeoxyribonuclease 27.8 2E+02 0.0044 20.1 5.0 38 132-180 7-44 (95)
33 PF09539 DUF2385: Protein of u 27.7 1.4E+02 0.003 21.0 4.2 33 136-179 29-61 (96)
34 PRK14063 exodeoxyribonuclease 27.5 1.9E+02 0.0042 19.2 5.0 37 133-180 5-41 (76)
35 PRK13696 hypothetical protein; 26.8 1.8E+02 0.0039 18.7 4.8 25 119-143 9-33 (62)
36 TIGR02568 LcrE type III secret 26.6 2.9E+02 0.0064 22.4 6.7 34 119-152 170-204 (240)
37 PF05974 DUF892: Domain of unk 24.7 3.1E+02 0.0067 20.7 7.6 69 5-79 9-78 (159)
38 PF14118 YfzA: YfzA-like prote 24.7 72 0.0016 22.3 2.3 23 120-142 51-73 (94)
39 PF13852 DUF4197: Protein of u 24.7 1.3E+02 0.0028 24.0 4.1 44 123-179 48-91 (202)
40 TIGR02301 conserved hypothetic 22.7 2.2E+02 0.0047 20.9 4.6 31 137-178 55-85 (121)
41 PRK15338 type III secretion sy 22.4 1.1E+02 0.0023 27.0 3.4 28 119-146 200-227 (372)
42 KOG2867 Phosphotyrosyl phospha 21.4 5.6E+02 0.012 22.5 7.8 27 129-155 90-116 (367)
43 PF09164 VitD-bind_III: Vitami 21.1 2.5E+02 0.0055 18.3 4.4 29 127-155 3-31 (68)
44 TIGR02895 spore_sigI RNA polym 20.4 95 0.0021 25.0 2.6 29 48-76 120-152 (218)
45 cd07910 MiaE MiaE tRNA-modifyi 20.0 4.4E+02 0.0096 20.7 9.6 67 40-110 50-122 (180)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=4.5e-46 Score=298.64 Aligned_cols=175 Identities=23% Similarity=0.301 Sum_probs=160.9
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCC---CCCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELS---ETVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~---~~~~~p~t~~ 76 (192)
|++||+|||+||.+|+|+++++++|+| + .+.+..+...+..+++ |+.+|+++++++||+.+ +.+|+|+|++
T Consensus 37 F~~YL~QDy~YL~~~~ra~~~~~~ka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~a 111 (218)
T COG0819 37 FQFYLVQDYLYLVNFARALALLASKAP---D--LELMEELAKIIQFLVEGEMELHERLAEELGISLDELLKTEPSPANKA 111 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHH
Confidence 799999999999999999999999999 4 6678899999998876 99999999999999973 3689999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||++++. ++..+++||+||+|+|.+||+.+.... ..+++++|++||++|+|++|++.|+.++++||+++...+
T Consensus 112 Yt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~--~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~ 189 (218)
T COG0819 112 YTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKP--RASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSS 189 (218)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988 699999999999999999999887432 124789999999999999999999999999999999888
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+ +++++|.+||++++++|.+||||||+.
T Consensus 190 ~---------~~~~~l~~iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 190 E---------EELEKLKQIFLTASRFELAFWDMAYRL 217 (218)
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 899999999999999999999999974
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=1.7e-40 Score=298.52 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=156.3
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSETVPQKANQVYCR 79 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~~~~~~~gi~~~~~~~~p~t~~Y~~ 79 (192)
|++||+||++||.+|+|+++++++|+|+ .+++..+...+..+. +|+++|+++++++|+ +.+++|+|++|++
T Consensus 354 F~~Yl~QD~~yL~~~~r~~a~~~aka~~-----~e~~~~~~~~~~~~~~~E~~~h~~~~~~~~~---~~~~~p~~~aY~~ 425 (530)
T PRK14713 354 FEFYLAQDALYLNGYSRALARLAALAPD-----PAEQVFWAQSAQACLEVESELHRSWLGDRDA---DTAPSPVTLAYTD 425 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cCCCChHHHHHHH
Confidence 7899999999999999999999999994 567888888887765 599999999999997 3578999999999
Q ss_pred HHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029487 80 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 157 (192)
Q Consensus 80 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~ 157 (192)
||++++. ++.++++||+||+|+|.++|+.+.... ...++++|++||++|++++|.++|+++++++|++++.+++
T Consensus 426 ~l~~~a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~--~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~-- 501 (530)
T PRK14713 426 FLLARAAGGSYAVGAAAVLPCFWLYAEVGAELHARA--GNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP-- 501 (530)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHHhhc--cCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH--
Confidence 9999866 788999999999999999999876321 1225789999999999999999999999999999998888
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcCC
Q 029487 158 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA 192 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~~ 192 (192)
+++++|+++|+++|+||++||||||+++
T Consensus 502 -------~~~~~~~~~F~~a~~~E~~Fwd~A~~~~ 529 (530)
T PRK14713 502 -------AERAAMARAFLTACRYELEFFDQARRRA 529 (530)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999999875
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.7e-39 Score=301.81 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=154.2
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSETVPQKANQVYCR 79 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~~~~~~~gi~~~~~~~~p~t~~Y~~ 79 (192)
|++||+|||+||.+|+|+++++++|+| + .+++..+...+..+. +|+++|+++++++|+ +.+++|+|++|++
T Consensus 580 F~~YL~QD~~YL~~yar~~a~~~aka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~~~~---~~~~~p~~~aYt~ 651 (755)
T PRK09517 580 FDFYIDQDAQYLRQYSRALARLSSIAP---D--SHAQVEWAQSAAECIVVEAELHRSYLSGKEA---PSAPSPVTMAYTD 651 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CCCCChHHHHHHH
Confidence 789999999999999999999999999 4 566888888887665 599999999999986 3578999999999
Q ss_pred HHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029487 80 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 157 (192)
Q Consensus 80 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~ 157 (192)
||++++. ++..+++||+||+|+|.++|+.+.. .. .++++|++||++|++|+|.++|++++++||++++.+++
T Consensus 652 ~l~~~a~~g~~~~~laAllPC~w~Y~~ig~~l~~---~~-~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~-- 725 (755)
T PRK09517 652 FLIARTYTEDYVVGVAAVLPCYWLYAEIGLMLAE---QN-HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP-- 725 (755)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh---cc-CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH--
Confidence 9999866 7899999999999999999998763 12 24678999999999999999999999999999998888
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 158 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+++++|+++|+++|+||++||||||++
T Consensus 726 -------~~~~~l~~~F~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 726 -------EQRVDAARAFLSASVHEREFFDQATRH 752 (755)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999975
No 4
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=3.5e-39 Score=257.76 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=153.7
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH-hhHHHHHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-AGLHDEIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++.+++|+|+ .+.++.+...+ ..+.+|+++|.++++++|++.++ .+|+|+|++
T Consensus 30 f~~Yl~QD~~yl~~~~r~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~~ 104 (210)
T PF03070_consen 30 FRYYLIQDYHYLKHFARALALLASKAPD-----PEEQRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPSPATRA 104 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-HHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhhhHHHH
Confidence 6899999999999999999999999995 44564555554 44567999999999999999876 789999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||.+++. ++..+++||+||.|+|..+++.+..... ..++++|++||+.|++++|...|+++.+++|+++..++
T Consensus 105 y~~~l~~~a~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~--~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~ 182 (210)
T PF03070_consen 105 YTDFLLSLAQTGSLAEGLAALLPCEWIYAEIGKRLAEKLR--APEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEAS 182 (210)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999876 7899999999999999999988774332 24789999999999999999999999999999998887
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
+ +++++++++|+++|++|+.|||+||+
T Consensus 183 ~---------~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 183 D---------EERERLEEIFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 78999999999999999999999985
No 5
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.3e-36 Score=272.12 Aligned_cols=168 Identities=10% Similarity=0.142 Sum_probs=144.8
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSETVPQKANQVYCR 79 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~~~~~p~t~~Y~~ 79 (192)
|++||+||++||++|+|+++++++|+|+ .+++..+...+..+.+ |..+|+++++. ....+++|+|++|++
T Consensus 47 F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~-----~~~~~~~~~~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~ 117 (504)
T PTZ00347 47 FRTYIAQDTLYLNGYIRILSYCITKSDV-----TATGGGLLELLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVD 117 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHH
Confidence 7899999999999999999999999994 5568888888877665 77899998742 234678999999999
Q ss_pred HHHHhcC--Cc--hHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcch
Q 029487 80 FLESLMS--PE--VDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 155 (192)
Q Consensus 80 ~l~~~a~--~~--~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~ 155 (192)
||++++. ++ ..+++||+||+|+|.++|+.+.... ...++++|++||++|++|+|.++|+++++++|+++..
T Consensus 118 ~l~~~a~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~--~~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~~--- 192 (504)
T PTZ00347 118 FLLASGNADTLGPSVVIAAVIPCARLYAWVGQELTNEV--ELTESHPFRRWLLSYSDEPINTSVEQLESLLDKYIRP--- 192 (504)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhch---
Confidence 9999877 56 7899999999999999999876321 1225789999999999999999999999999998642
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 156 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+++++++++|+++|+||++||||||+.
T Consensus 193 ---------~~~~~~~~~F~~~~~~E~~Fw~~Ay~~ 219 (504)
T PTZ00347 193 ---------GEFSEVAQAYRRAMELEYDFFDSFGYC 219 (504)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 467789999999999999999999973
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.90 E-value=7.4e-23 Score=174.98 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=147.7
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCC---CCCchHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE---TVPQKANQVY 77 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~---~~~~p~t~~Y 77 (192)
|.+||.|||+||.+|+|+++....|+|+ .+++..-+.....+.+|+..|.++++.+|++..+ -++.|++++|
T Consensus 347 fq~~l~qdy~ylIn~ara~~v~g~ks~~-----i~~ie~~~~iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Ay 421 (523)
T KOG2598|consen 347 FQDYLEQDYLYLINYARAHGVAGSKSPT-----IEDIEKEAVIVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAY 421 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCc-----HHHHHHHhHHHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHH
Confidence 6899999999999999999999999995 4456666666677778999999999999999865 3448999999
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcch
Q 029487 78 CRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 155 (192)
Q Consensus 78 ~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~ 155 (192)
.+|+..+++ ++..+..|+.| |....+.+..... ..+.++|++|+++|++.++.+.++...+.++...+..++
T Consensus 422 sry~~d~~~~g~~~~l~~a~~p----y~~~l~~lk~~~~--as~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p 495 (523)
T KOG2598|consen 422 SRYINDTGRRGNWQELVIALNP----YVFALDKLKDEIT--ASEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP 495 (523)
T ss_pred HHHhhhhhcccChhhhhhhhch----hhHHHHHHHhhcc--cCCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH
Confidence 999999987 78899999999 5555555543221 136789999999999999999999999999999999998
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 156 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
++.+.+..||.++|.+|..||+.++.
T Consensus 496 ---------e~~~~l~~i~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 496 ---------EKLQTLVTIFARVTEFETLFWTTALE 521 (523)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999874
No 7
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=97.31 E-value=0.007 Score=49.14 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=103.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHh----hHH--HHHHHHHHHHHHhCCCCCC---CCCch
Q 029487 2 QFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA----GLH--DEIAWFKKEASKWGVELSE---TVPQK 72 (192)
Q Consensus 2 ~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~----~~~--~E~~~~~~~~~~~gi~~~~---~~~~p 72 (192)
+-|++.-++|+++|.+-++.++++++++ +..+..++-+. +.. +=+++-..+...+|++.++ ..|.|
T Consensus 44 ~~yvi~~~~~~k~~p~~lSail~rcdd~-----~~r~~~leni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp 118 (242)
T COG5424 44 QGYVINRYYYQKNFPLYLSAILARCDDD-----DVRREWLENIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLP 118 (242)
T ss_pred HHHHHhhhHHHHhhhHHHHHHHhcCCcH-----hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCH
Confidence 5689999999999999999999999953 23333333221 111 2356777788889999875 56999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH--------hhCChHHHHHHHHHHH
Q 029487 73 ANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ--------RWGNDGFGQYCHSLKK 144 (192)
Q Consensus 73 ~t~~Y~~~l~~~a~~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~--------~y~~~~f~~~v~~l~~ 144 (192)
.|+.=++.-...+. -..+++++...+..+....+...... .+-+.|..|++ -+.-.+ ..=+....+
T Consensus 119 ~~~~av~~~~~~a~-~~s~~~~~aslyt~El~apri~~~ki----~gl~~~~~~~~~a~~~yf~~h~eaD-~~Ha~Ealk 192 (242)
T COG5424 119 STRFAVDTWVRFAT-EKSWLEGAASLYTYELVAPRISVEKI----SGLPYFNGFSDAAAYAYFREHLEAD-VRHAEEALK 192 (242)
T ss_pred HHHHHHHHHHHHhc-chhHHHHHHHHHHHHhhccHHHHHHc----cCchhhcCcchHHHHHHHHHHHHHh-hhhHHHHHH
Confidence 99999998888774 44566677777777777766333211 12222333443 221111 111223344
Q ss_pred HHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 145 IANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 145 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
+|.+.+.+. +.+.++.++-.+++..=+.|-|..+.
T Consensus 193 iv~~~~~t~-----------E~~~~~~~~~~~~~D~lw~fLda~~~ 227 (242)
T COG5424 193 IVLELAGTR-----------ELQDQVLDALQKSLDVLWLFLDARMQ 227 (242)
T ss_pred HHHHHHhch-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443321 45667888888888888888877543
No 8
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=96.98 E-value=0.081 Score=43.56 Aligned_cols=154 Identities=9% Similarity=0.031 Sum_probs=94.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHH---------HHHHHHHHHHhCCCCCC---C-
Q 029487 2 QFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDE---------IAWFKKEASKWGVELSE---T- 68 (192)
Q Consensus 2 ~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E---------~~~~~~~~~~~gi~~~~---~- 68 (192)
+-|..|=|+|-..+-+-.+-+++++|++ +..+.+ +.++.+| ++.+.++.+.+|++.++ .
T Consensus 46 q~wa~nrYyyq~~~P~kdaaI~S~c~D~-----e~Rr~w---~~ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~ 117 (246)
T PRK05157 46 QAWVANRFYYQINIPLKDAAILSNCPDR-----ETRREW---RQRILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLR 117 (246)
T ss_pred HHHHHHhchhhccchHHHHHHHHcCCCH-----HHHHHH---HHHHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccc
Confidence 5688888899889999999999999943 334333 3444443 57899999999998864 2
Q ss_pred CCchHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhC--ChH-HHHHHH---
Q 029487 69 VPQKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG-FGQYCH--- 140 (192)
Q Consensus 69 ~~~p~t~~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~--~~~-f~~~v~--- 140 (192)
...|.|+..++-....+. ++.+.+++++.-+..=.++.+ .-..|-+.|. +++ +.=|..
T Consensus 118 ~~lP~tr~aVday~~~~r~~~~~eavas~ltE~~~P~I~~~--------------ri~gl~~~Y~~~~~e~l~yF~~h~~ 183 (246)
T PRK05157 118 GVLPGVRFAVDAYVNFARRAPWLEAVASSLTELFAPQIHQE--------------RLAGWPEHYPWIDPEGLAYFRSRLT 183 (246)
T ss_pred cCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhHHHHH--------------HHHHHHHHCCCCCHHHHHHHHHHhh
Confidence 367999888877766654 555555544432211111111 2223444333 222 222211
Q ss_pred --------HHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhh
Q 029487 141 --------SLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 189 (192)
Q Consensus 141 --------~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~ 189 (192)
.+.-+++. +. ++ ++++++.++-...|..=+.|+|+-|
T Consensus 184 ~a~~Dvehal~~~l~~-~~--t~---------e~q~~al~al~~k~d~Lw~~LDai~ 228 (246)
T PRK05157 184 QAPRDVEHGLAYVLDH-AT--TR---------EQQERALEALQFKLDVLWSMLDALY 228 (246)
T ss_pred ccchhHHHHHHHHHHH-cC--CH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 21 33 6788899999999999999999865
No 9
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=96.49 E-value=0.37 Score=39.52 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=89.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHH---------HHHHHHHHHHhCCCCCC---CC
Q 029487 2 QFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDE---------IAWFKKEASKWGVELSE---TV 69 (192)
Q Consensus 2 ~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E---------~~~~~~~~~~~gi~~~~---~~ 69 (192)
+.|..|=|+|-..+-+-.+-+++++|++ +..+.+ ++++.+| +....++++..|++.++ .+
T Consensus 39 ~~wa~nrYyyq~~iP~kdAAi~s~c~D~-----e~Rr~w---l~ri~DhdG~~~~~ggie~WlrfaealGl~re~v~s~~ 110 (239)
T TIGR02111 39 QAWVLNRYYYQANIPLKDAAILARCPDP-----QLRRIW---RQRILDHDGDHEEDGGIERWLRLAEAVGLDREYVLSTR 110 (239)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHcCCCH-----HHHHHH---HHHHHHhcCCCCCCCcHHHHHHHHHHhCCCHHHHhccc
Confidence 5688888999888888899999999943 334333 3444443 57889999999998764 23
Q ss_pred -CchHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhC--ChH-HHHHHHH--
Q 029487 70 -PQKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG-FGQYCHS-- 141 (192)
Q Consensus 70 -~~p~t~~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~--~~~-f~~~v~~-- 141 (192)
..|.|+..++=....+. ++.+.+++++. +..+-+ +. ...-..|.+.|. +++ +.=|-..
T Consensus 111 ~~lP~trfaVday~~f~r~~~~~eavasslT----E~f~P~-I~---------~~ri~gl~~~Y~~~~~e~l~yF~~r~~ 176 (239)
T TIGR02111 111 GVLPGTRFAVDAYVHFVREKSLLEAIASSLT----ELFAPQ-IH---------SERVAGMLQHYDFIDDAALAYFRKRLT 176 (239)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHhHH-HH---------HHHHHhHHHHCCCCCHHHHHHHHHHHh
Confidence 37888755554444332 55555555433 222211 11 011223334332 222 1111111
Q ss_pred ---------HHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhh
Q 029487 142 ---------LKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 189 (192)
Q Consensus 142 ---------l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~ 189 (192)
+.-+++.+. ++ ++++++.++-...|..=+.|.|.-+
T Consensus 177 qa~rd~e~~l~~~l~~~~---t~---------e~Q~~~l~al~fk~dvLw~~LDal~ 221 (239)
T TIGR02111 177 QAPRDVEFGLDYVLDHAT---TR---------EKQEAALEALTFKCDVLWAQLDALY 221 (239)
T ss_pred hhHHHHHHHHHHHHHHcC---CH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111133221 33 6778899999999999999998755
No 10
>CHL00168 pbsA heme oxygenase; Provisional
Probab=87.89 E-value=10 Score=31.10 Aligned_cols=82 Identities=7% Similarity=0.097 Sum_probs=45.5
Q ss_pred CCCCCC-CCCchHHHHHHHHHHHhcCCchHHHHHHHH-HHHHH-------HHHHHHHhcccCCCCCCChhHHHHHHhhCC
Q 029487 62 GVELSE-TVPQKANQVYCRFLESLMSPEVDYTVAITV-FWAIE-------AVYQESFAHCLEPDTNTPPELQEVCQRWGN 132 (192)
Q Consensus 62 gi~~~~-~~~~p~t~~Y~~~l~~~a~~~~~~~~al~p-c~~~y-------~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~ 132 (192)
|-+..+ ++|+|+|..|++.+.+++.+ ...++++ |+..| ++|.+.+.... +.+++.- -.+...++-
T Consensus 89 G~~w~~~~~p~pa~~~Yv~rI~~~~~~---~P~~LvAH~YvrYLGdlsGGQiI~k~l~r~~--gl~~~~G-~~Fy~F~~i 162 (238)
T CHL00168 89 GDDWKSIIEPSPATKIYVDRIHKISAK---KPELLIAHAYTRYLGDLSGGQILKKIAQRAM--NLSDSGG-LAFYDFDNI 162 (238)
T ss_pred CCCccccCCCChHHHHHHHHHHHHhhc---ChHHHHHHHHHHHHHhccccHHHHHHHHHHh--CCCCCcC-ccccCCCCc
Confidence 444432 67899999999999998752 2446666 67776 33433222211 1111000 012222332
Q ss_pred hHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRL 149 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~ 149 (192)
++-..+-+..++.+|.+
T Consensus 163 ~~~~~fk~~yr~~Ld~l 179 (238)
T CHL00168 163 EDDQEFKQIYKAALDNL 179 (238)
T ss_pred CcHHHHHHHHHHHHhcC
Confidence 34567777888888865
No 11
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=76.35 E-value=37 Score=26.96 Aligned_cols=89 Identities=9% Similarity=0.027 Sum_probs=54.2
Q ss_pred HHHHHhCCCCCC------CCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 029487 56 KEASKWGVELSE------TVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ 128 (192)
Q Consensus 56 ~~~~~~gi~~~~------~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~ 128 (192)
+.++++|++... +|-...-..|+-.|...|. .....+.+..|.- ...+.... .-...+++|.+
T Consensus 33 eslrelglD~~~~~aa~aIpDArdRL~YVv~mTeqAA~r~lnaVea~~P~q---d~L~~~a~-------~l~~rWq~wm~ 102 (217)
T COG3143 33 ESLRELGLDQAIAEAAEAIPDARDRLNYVVQMTEQAAERALNAVEASQPHQ---DQLEKSAK-------ALTQRWQDWMA 102 (217)
T ss_pred HHHHHhCcchhhHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhhchHH---HHHHHHHH-------HHHHHHHHHHc
Confidence 456788998742 3334456788888887765 3445555555542 11211111 02356778887
Q ss_pred hhC-ChHHHHHHHHHHHHHHHHHhhcc
Q 029487 129 RWG-NDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 129 ~y~-~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
.=- .++|.+.|...++.+-....+.+
T Consensus 103 ~~i~~~~~r~Lv~~t~~fL~~vp~~t~ 129 (217)
T COG3143 103 RPIDLDDARELVTDTRQFLADVPQHTS 129 (217)
T ss_pred CccchHHHHHHHHHHHHHHHhcccchh
Confidence 765 48899999998888877655444
No 12
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=74.52 E-value=5.9 Score=27.63 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCC----CCCchHHHHHHHHHHHhcC
Q 029487 51 IAWFKKEASKWGVELSE----TVPQKANQVYCRFLESLMS 86 (192)
Q Consensus 51 ~~~~~~~~~~~gi~~~~----~~~~p~t~~Y~~~l~~~a~ 86 (192)
..+|+++++.+|++.+. ....|.+.++.+.+...+.
T Consensus 19 ~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~ 58 (106)
T PF14518_consen 19 PELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCL 58 (106)
T ss_dssp HHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcc
Confidence 46889999999999862 3456789999998887654
No 13
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=71.39 E-value=54 Score=26.64 Aligned_cols=131 Identities=10% Similarity=0.189 Sum_probs=75.5
Q ss_pred HHHHhhHHHHHH----------HHHHHHHH-hCCCCCCCCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHH----
Q 029487 41 LGGMAGLHDEIA----------WFKKEASK-WGVELSETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEAV---- 104 (192)
Q Consensus 41 ~~~~~~~~~E~~----------~~~~~~~~-~gi~~~~~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~y~~---- 104 (192)
.+...++.+|+. ++.+.+.. +|.+.....|+++|+.+..-+..+.. +. -..|-.||.++..
T Consensus 73 ~El~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~~---s~vlGa~YAtE~~AIpE 149 (231)
T PF12981_consen 73 QELQRNINEEMGEGCGKISHYVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWDS---SEVLGACYATEAAAIPE 149 (231)
T ss_dssp HHHHHHHHHHTTTTTTT--HHHHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS-H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhcCCCCCCcchHHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHH
Confidence 344566777887 66666665 89988888999999999999998876 33 3344555555432
Q ss_pred --HHHHHhcccCCCCCCC----hhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHH
Q 029487 105 --YQESFAHCLEPDTNTP----PELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 178 (192)
Q Consensus 105 --~~~~~~~~~~~~~~~~----~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 178 (192)
....+..... ...+ ...-++.+.|-+..=.+-.+.+++.|+....+. +++...++=|..++
T Consensus 150 l~ll~ei~~~la--~rk~~~~~~s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~~e-----------~q~~~f~~Gf~~mI 216 (231)
T PF12981_consen 150 LQLLYEIVNELA--QRKGLHNSWSQLDFYDWHLDGTEQEHKDGLRQFLASYIDTE-----------EQMPLFKDGFLAMI 216 (231)
T ss_dssp HHHHHHHHTTT-----HHHHH------HHHHHCS----HHHHHHHHHHHTT--GG-----------G-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cccCCCcchhhhHHHHHhcchHHHHHHHHHHHHHHHHcCcc-----------hhHHHHHHHHHHHH
Confidence 2222322111 1111 111267777887777888889999999765432 45788899999999
Q ss_pred HHHHHhhHh
Q 029487 179 EHEVEFWNM 187 (192)
Q Consensus 179 ~lE~~Fwd~ 187 (192)
..=..||+.
T Consensus 217 ~~m~~wW~~ 225 (231)
T PF12981_consen 217 DIMEDWWKE 225 (231)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988889975
No 14
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=59.81 E-value=80 Score=24.50 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=42.1
Q ss_pred HHhCCCCCC--CCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHH----HHHHHHHHhcccCCCCCCChhHHHHHHhhC
Q 029487 59 SKWGVELSE--TVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAI----EAVYQESFAHCLEPDTNTPPELQEVCQRWG 131 (192)
Q Consensus 59 ~~~gi~~~~--~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~----y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~ 131 (192)
+.+|.+... .+|.|++ .|.+++...+. +...++..+.+...+ =+.|.+.+.... +. ++.. -.+...|+
T Consensus 82 ~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~--~~-~~~~-~~f~~~~g 156 (203)
T cd00232 82 AYLGGSDWRVREPPLPAA-AYAARLREIAEENPALLLGHAYVRYGADLSGGQVLAKIAQRAL--LL-EGKG-LAFYAFHG 156 (203)
T ss_pred HHHhCCCccccCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHh--CC-CCcc-CccccCCC
Confidence 345555433 3456677 99998887654 333333333333221 112222222111 11 1111 13555666
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 029487 132 NDGFGQYCHSLKKIANRL 149 (192)
Q Consensus 132 ~~~f~~~v~~l~~~ld~~ 149 (192)
.++-...-+.++..+|.+
T Consensus 157 ~~~~~~~w~~f~~~l~~~ 174 (203)
T cd00232 157 IADRGLFKREFREALDAL 174 (203)
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 455566677778888875
No 15
>PRK13689 hypothetical protein; Provisional
Probab=56.80 E-value=45 Score=22.30 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=38.4
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHhhcch------------hhhhccchhHHHHHHHHHHHHHHH
Q 029487 128 QRWGNDGFGQYCHSLKKIANRLLEKASD------------DLIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 128 ~~y~~~~f~~~v~~l~~~ld~~~~~~~~------------~~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
.-|+++-++....++..++++-- ++. .+.++.+..++++.+.+.|.+++.
T Consensus 5 SKYsd~qvE~il~el~~VLeKH~--Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (75)
T PRK13689 5 SKYSDEQVEQLLAELLAVLEKHK--APTDLSLMVLGNMVTNLLNTSVAPAQRQAIAESFARALQ 66 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 35888999999999999999742 222 224677777899999999998875
No 16
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=50.02 E-value=58 Score=19.89 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 135 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 135 f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
|.+....+.++++++-.+-.+ ++.....|.+++.+
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~s-----------Ldes~~lyeeg~~l 35 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELS-----------LDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHH
Confidence 678888999999987643332 45666667666654
No 17
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=47.53 E-value=1.5e+02 Score=23.97 Aligned_cols=87 Identities=6% Similarity=-0.019 Sum_probs=47.9
Q ss_pred HHHHHhCCCCC------CCCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 029487 56 KEASKWGVELS------ETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ 128 (192)
Q Consensus 56 ~~~~~~gi~~~------~~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~ 128 (192)
+.++++|++.. ++|-......|+--|...|. ...+.+++..|.----..=...+ ...+..|..
T Consensus 30 dsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L----------~~~w~~l~~ 99 (214)
T PRK11166 30 DSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKAL----------DARWDEWFA 99 (214)
T ss_pred HHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHc
Confidence 44677888753 24444556777777766555 56677777777632211100111 123344444
Q ss_pred hh-CChHHHHHHHHHHHHHHHHHhh
Q 029487 129 RW-GNDGFGQYCHSLKKIANRLLEK 152 (192)
Q Consensus 129 ~y-~~~~f~~~v~~l~~~ld~~~~~ 152 (192)
.= ..++|.+.+......+.+....
T Consensus 100 ~~~~~~e~~~L~~~~~~fL~~v~~~ 124 (214)
T PRK11166 100 NPIELADARELVTDTRAFLADVPEH 124 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHhh
Confidence 32 2467888887777777765443
No 18
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=42.51 E-value=37 Score=23.34 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 127 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 127 i~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
|..|+-.+|-++|+.+.+.- ..++ ++...+...|.+.+.+
T Consensus 7 i~dyTE~EFl~~v~~i~~~~-----~~~e---------e~~d~lv~hF~~iteH 46 (85)
T PF01320_consen 7 ISDYTESEFLEFVKEIFNAE-----LKTE---------EEHDELVDHFEKITEH 46 (85)
T ss_dssp GGGSBHHHHHHHHHHHHHTC-----SSSC---------HHHHHHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHcCC-----CCCH---------HHHHHHHHHHHHcCCC
Confidence 45666677666665554331 1233 5677888888877764
No 19
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=40.25 E-value=1.1e+02 Score=20.80 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 134 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 134 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
.|.+....|..+|.++=..- -.++....+|.+++.|
T Consensus 11 sfE~~l~eLE~IV~~LE~Ge-----------l~Le~sl~~~erG~~L 46 (81)
T COG1722 11 SFEEALAELEEIVESLESGE-----------LPLEEALKEFERGMAL 46 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCc-----------ccHHHHHHHHHHHHHH
Confidence 79999999999999874322 2355666677766654
No 20
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.30 E-value=98 Score=20.92 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
..|.+....|..+|+++-..-.+ ++...+.|.+++.|
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~l~-----------Lees~~lyeeG~~L 43 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGDLP-----------LEESVALYKEGLGL 43 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 57899999999999987543332 44555556555544
No 21
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.16 E-value=1.2e+02 Score=20.23 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
..|.+....|..+|+++-..-.+ ++.....|.+++.|
T Consensus 6 ~sfEeal~~Le~IV~~LE~gdl~-----------Leesl~lyeeG~~L 42 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNETVS-----------LEESLDLYQRGMKL 42 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHH
Confidence 47999999999999987543332 45566666666554
No 22
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=35.65 E-value=2.7e+02 Score=23.48 Aligned_cols=106 Identities=9% Similarity=0.056 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhcccCCCCCC---ChhHHHHHHhh--------CChHHHHHHHH
Q 029487 74 NQVYCRFLESLMSPEVDYTVAIT-VFWAIEAVYQESFAHCLEPDTNT---PPELQEVCQRW--------GNDGFGQYCHS 141 (192)
Q Consensus 74 t~~Y~~~l~~~a~~~~~~~~al~-pc~~~y~~~~~~~~~~~~~~~~~---~~~y~~Wi~~y--------~~~~f~~~v~~ 141 (192)
..++.+|..+.. ++...+. +-.-++..+.+.+......+.+. ...|.-||+.. .||+|.+....
T Consensus 168 ~~a~~~~~~a~~----ey~~~l~~~~~~a~~~~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~ 243 (293)
T PF09712_consen 168 FDAWMEYQRASQ----EYQAQLSEAWMKAFERMMEKLQERAEEGEQIKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQ 243 (293)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 344444444432 3333333 44445566666664222222211 24566787654 68888766655
Q ss_pred HHHHHHHHHhhcch--hhhhccchhHHHHHHHHHHHHHHHHHHH
Q 029487 142 LKKIANRLLEKASD--DLIMGKAGDDVLKKAEVELIRVLEHEVE 183 (192)
Q Consensus 142 l~~~ld~~~~~~~~--~~~~~~~~~~~~~~~~~~F~~~~~lE~~ 183 (192)
+.+-+-++-....+ +...+-.+-..++.+.++.++..+||.+
T Consensus 244 ~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre 287 (293)
T PF09712_consen 244 LVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRRE 287 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 54433332211111 0011111114567888999999988875
No 23
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.46 E-value=2.9e+02 Score=23.79 Aligned_cols=63 Identities=6% Similarity=-0.040 Sum_probs=34.1
Q ss_pred hhHHHHHHhh--------CChHHHHHHHHHHHHHHHHHhhcch--hhhhccchhHHHHHHHHHHHHHHHHHHH
Q 029487 121 PELQEVCQRW--------GNDGFGQYCHSLKKIANRLLEKASD--DLIMGKAGDDVLKKAEVELIRVLEHEVE 183 (192)
Q Consensus 121 ~~y~~Wi~~y--------~~~~f~~~v~~l~~~ld~~~~~~~~--~~~~~~~~~~~~~~~~~~F~~~~~lE~~ 183 (192)
..|..||+.. .+++|.+..-.+.+..-++-....+ +...+-.+-..++.+.++.++..+||.+
T Consensus 232 e~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~ 304 (320)
T TIGR01834 232 ALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRRE 304 (320)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566777654 6788876666554444333222211 1111111224567788888888888765
No 24
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.64 E-value=1.4e+02 Score=20.13 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
..|.+....|..+|+++-..-.+ ++.....|.+++.|
T Consensus 10 ~sfEea~~~LEeIv~~LE~~~l~-----------Lees~~lyeeg~~L 46 (80)
T PRK00977 10 LSFEEALAELEEIVTRLESGDLP-----------LEESLAAFERGVAL 46 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 56899999999999987543332 44566666666554
No 25
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.35 E-value=1.4e+02 Score=19.83 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
..|.+....|..+|+++=..-.+ ++...+.|.+++.|
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~-----------Leesl~~ye~G~~L 42 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSAS-----------LEDSLDMYQKGIEL 42 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 46899999999999987543332 44555666666554
No 26
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=32.59 E-value=1.4e+02 Score=19.30 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 134 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 134 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
.|.+....|..+|+++=..-.+ ++.....|.+++.|
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~l~-----------Leesl~lyeeG~~L 37 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGDLA-----------LEEALNLFERGMAL 37 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 3788889999999987543332 44566666666554
No 27
>PF15565 Imm16: Immunity protein 16
Probab=32.36 E-value=83 Score=22.51 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 029487 138 YCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 184 (192)
Q Consensus 138 ~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~F 184 (192)
-|+.+.+.+++++...+. +-...+..+|--.++.|.+|
T Consensus 14 e~e~Fe~~L~~l~~~~d~---------~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 14 ECEEFEEALNELAKYPDN---------DVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHhcCCH---------hHHHHHHHHhcCccchHHHH
Confidence 467777888887777666 55666666666666666655
No 28
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.12 E-value=1.6e+02 Score=19.65 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 134 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 134 ~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
.|.+....|..+|+++-..-.+ ++.....|.+++.|
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~-----------Leesl~lyeeG~~L 40 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELS-----------LDDSLKAFEEGVKH 40 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 5899999999999987543322 44555666666544
No 29
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=29.23 E-value=3e+02 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=15.3
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 029487 119 TPPELQEVCQRWGNDGFGQYCHSLKKIANRL 149 (192)
Q Consensus 119 ~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~ 149 (192)
.++...+|+..| ....+.|...|.+.
T Consensus 177 kd~~hveWvks~-----~~l~~~L~~YVke~ 202 (312)
T PF01213_consen 177 KDPKHVEWVKSF-----KALLKELQAYVKEH 202 (312)
T ss_dssp T-HHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHH-----HHHHHHHHHHHHHh
Confidence 356667888766 44555566555554
No 30
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=29.19 E-value=2.4e+02 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHHHhcC
Q 029487 68 TVPQKANQVYCRFLESLMS 86 (192)
Q Consensus 68 ~~~~p~t~~Y~~~l~~~a~ 86 (192)
+.|+|++.+|++++..++.
T Consensus 94 I~~sp~t~~yv~rv~~iaa 112 (238)
T COG5398 94 IQPSPATIAYVDRVRYIAA 112 (238)
T ss_pred cCcChhHHHHHHHHHHHHh
Confidence 6789999999999998765
No 31
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=28.62 E-value=2.7e+02 Score=21.36 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHH
Q 029487 92 TVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSL 142 (192)
Q Consensus 92 ~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l 142 (192)
+.+++|---+.+.+-+++. +++.++++++.-.|++|++.++.+
T Consensus 110 i~~~lP~~~l~aL~~~K~~--------~s~~F~~f~~~l~S~ef~~~~~~~ 152 (179)
T PF06757_consen 110 ILALLPRDKLRALYEEKLA--------TSPEFAEFVEALRSPEFQQLYNAL 152 (179)
T ss_pred HHHHCCHHHHHHHHHHHHH--------CCHHHHHHHHHHcCHHHHHHHHHH
Confidence 4577777667676666554 468999999999999999988865
No 32
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.78 E-value=2e+02 Score=20.15 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 132 NDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 132 ~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
...|.+....|..+|+++-..-.+ ++.....|.+++.|
T Consensus 7 ~~sFEeal~~LEeIV~~LEsgdl~-----------LEesl~lyeeGv~L 44 (95)
T PRK14069 7 KISFEDALRELEQIAEKLERQDFS-----------LEESLKAYERGMEL 44 (95)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 456899999999999987543332 44555566665544
No 33
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=27.73 E-value=1.4e+02 Score=21.03 Aligned_cols=33 Identities=6% Similarity=0.085 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHH
Q 029487 136 GQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 136 ~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
+.|=+.+.++|+- +..++ .++.+|.+.|-++-+
T Consensus 29 ~~WR~~M~~Ll~~--E~p~~---------~rR~rl~~aFN~GYr 61 (96)
T PF09539_consen 29 QYWRDRMQALLDA--EAPDE---------ARRARLIAAFNRGYR 61 (96)
T ss_pred chHHHHHHHHHHh--cCCCH---------HHHHHHHHHHHHHHH
Confidence 3445577778873 44455 788999999988743
No 34
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.49 E-value=1.9e+02 Score=19.22 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
..|.+....|..+|+++-..-.+ +......|.+++.|
T Consensus 5 ~sfEeal~~LE~Iv~~LE~~~l~-----------Leesl~lyeeG~~L 41 (76)
T PRK14063 5 LSFEEAISQLEHLVSKLEQGDVP-----------LEEAISYFKEGMEL 41 (76)
T ss_pred cCHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHH
Confidence 46889999999999987543332 34455555555543
No 35
>PRK13696 hypothetical protein; Provisional
Probab=26.83 E-value=1.8e+02 Score=18.72 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.4
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHH
Q 029487 119 TPPELQEVCQRWGNDGFGQYCHSLK 143 (192)
Q Consensus 119 ~~~~y~~Wi~~y~~~~f~~~v~~l~ 143 (192)
++..|......-.+..|.+++..|.
T Consensus 9 ~dd~Y~~L~~kk~~~SFSevi~~L~ 33 (62)
T PRK13696 9 SDDVYEKLLEIKGDKSFSEVIRELI 33 (62)
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888888999999999988
No 36
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=26.58 E-value=2.9e+02 Score=22.41 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=25.6
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHHHH-HHHHHhh
Q 029487 119 TPPELQEVCQRWGNDGFGQYCHSLKKI-ANRLLEK 152 (192)
Q Consensus 119 ~~~~y~~Wi~~y~~~~f~~~v~~l~~~-ld~~~~~ 152 (192)
....|..|++.|+...|...++.+.+- ...+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~fL~rALa~DL~s~ 204 (240)
T TIGR02568 170 LVQLLSDLIERYGAQRFDIVLDFLIRALAADLSAQ 204 (240)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999887554 4455433
No 37
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=24.71 E-value=3.1e+02 Score=20.68 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=44.6
Q ss_pred HHhhHHHH-HHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 029487 5 LGQDYIFV-REFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCR 79 (192)
Q Consensus 5 L~QD~~YL-~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~~~~~p~t~~Y~~ 79 (192)
-.||.++. +...+++...+.++.+|. -...|...+..+..-+..-+.+++.+|.+++. .+.++...-+.
T Consensus 9 ~L~d~y~aE~q~~~~l~~~~~~a~~~~-----L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~-~~c~~~~gl~~ 78 (159)
T PF05974_consen 9 ELRDLYSAEKQLLKALPKLAEAASSPE-----LKAALEEHLEETEQQIERLEQIFEALGADPSA-EKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-C-HH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-CcchHHHHHHH
Confidence 35788887 589999999999999542 34456666655555677778888999988853 23345444444
No 38
>PF14118 YfzA: YfzA-like protein
Probab=24.69 E-value=72 Score=22.31 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=18.3
Q ss_pred ChhHHHHHHhhCChHHHHHHHHH
Q 029487 120 PPELQEVCQRWGNDGFGQYCHSL 142 (192)
Q Consensus 120 ~~~y~~Wi~~y~~~~f~~~v~~l 142 (192)
.+++.||+..|.+|.|.-+.--.
T Consensus 51 l~~FteW~t~Y~~p~fN~~Tv~~ 73 (94)
T PF14118_consen 51 LKFFTEWFTPYKSPQFNLFTVFF 73 (94)
T ss_pred CHHHHhhcccccCchhhhHHHHH
Confidence 36889999999999997665433
No 39
>PF13852 DUF4197: Protein of unknown function (DUF4197)
Probab=24.66 E-value=1.3e+02 Score=24.05 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHH
Q 029487 123 LQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 123 y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
.++--..-.+-.....+++++.-+|+.++.+.+ +...+|..+++
T Consensus 48 l~~~~~~Lr~~G~~~~~d~l~~smNrAAe~A~~-------------~A~~if~~AI~ 91 (202)
T PF13852_consen 48 LQKVESTLRKIGLGSQVDDLELSMNRAAEAAVP-------------EAAPIFVDAIK 91 (202)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 343334444456778999999999999988776 56677776643
No 40
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=22.73 E-value=2.2e+02 Score=20.94 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHH
Q 029487 137 QYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 178 (192)
Q Consensus 137 ~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 178 (192)
.|=+.+.++||. +..++ .++.+|.+.|.++-
T Consensus 55 ~WR~~M~~Ll~a--E~p~~---------~rR~rl~~aFNrGY 85 (121)
T TIGR02301 55 YWRSRMQALIDA--ETADE---------ERRARMTAAFNRGY 85 (121)
T ss_pred HHHHHHHHHHHh--hCCCh---------hHHHHHHHHHHHHH
Confidence 344567777774 34444 78899999998874
No 41
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=22.35 E-value=1.1e+02 Score=26.97 Aligned_cols=28 Identities=4% Similarity=-0.131 Sum_probs=23.0
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHHHHH
Q 029487 119 TPPELQEVCQRWGNDGFGQYCHSLKKIA 146 (192)
Q Consensus 119 ~~~~y~~Wi~~y~~~~f~~~v~~l~~~l 146 (192)
....|.+||+.|+...+...++.+.+-+
T Consensus 200 ~~~iY~~Wieeyg~~~R~~il~Fl~~AL 227 (372)
T PRK15338 200 EVEIYSDWIASYGYQRRLVVLDFIEGSL 227 (372)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3457999999999999999888876654
No 42
>KOG2867 consensus Phosphotyrosyl phosphatase activator [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=21.39 E-value=5.6e+02 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.7
Q ss_pred hhCChHHHHHHHHHHHHHHHHHhhcch
Q 029487 129 RWGNDGFGQYCHSLKKIANRLLEKASD 155 (192)
Q Consensus 129 ~y~~~~f~~~v~~l~~~ld~~~~~~~~ 155 (192)
.|+++.|.+|-+.+.+.+.++....-+
T Consensus 90 Rfgn~AyR~w~~kl~~~~~~ll~~~~p 116 (367)
T KOG2867|consen 90 RFGNKAYRTWYEKLYEELPKLLDEALP 116 (367)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 789999999999988888877655444
No 43
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=21.05 E-value=2.5e+02 Score=18.33 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=20.9
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhhcch
Q 029487 127 CQRWGNDGFGQYCHSLKKIANRLLEKASD 155 (192)
Q Consensus 127 i~~y~~~~f~~~v~~l~~~ld~~~~~~~~ 155 (192)
...|+...|.++-+.|.+.+-.-..++++
T Consensus 3 C~dYse~tFtEyKKrL~e~l~~k~P~at~ 31 (68)
T PF09164_consen 3 CADYSENTFTEYKKRLAERLRAKLPDATP 31 (68)
T ss_dssp TTTTTTS-HHHHHHHHHHHHHHH-TTS-H
T ss_pred chhhhhccHHHHHHHHHHHHHHHCCCCCH
Confidence 45688888999999988888877777777
No 44
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=20.43 E-value=95 Score=25.01 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCCCCC----CCCchHHHH
Q 029487 48 HDEIAWFKKEASKWGVELSE----TVPQKANQV 76 (192)
Q Consensus 48 ~~E~~~~~~~~~~~gi~~~~----~~~~p~t~~ 76 (192)
..|+..|...+++|||+.++ .|.+..|+.
T Consensus 120 ~eEI~~~~~~L~~~gi~~~dLv~~sPkh~d~r~ 152 (218)
T TIGR02895 120 RLEILEYKKLLKQFGIEFVELVKVSPKHRDTRK 152 (218)
T ss_pred HHHHHHHHHHHHHcCCcHHHHhhcCCCCHHHHH
Confidence 35999999999999999875 344554543
No 45
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=20.03 E-value=4.4e+02 Score=20.73 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=44.1
Q ss_pred HHHHHhhH-HHHHHHHHHHH---HHhCCCCCCCCCchHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHh
Q 029487 40 ILGGMAGL-HDEIAWFKKEA---SKWGVELSETVPQKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFA 110 (192)
Q Consensus 40 ~~~~~~~~-~~E~~~~~~~~---~~~gi~~~~~~~~p~t~~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~ 110 (192)
+...+..+ .+|+..|+.+. ++.|+......++| |.+-|..... ...-++--|+.+-.+++-=...+.
T Consensus 50 Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~----Ya~~L~k~vR~~~p~~llD~Llv~alIEARScERF~ 122 (180)
T cd07910 50 LVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDP----YASGLRKLVRKGEPERLLDRLLVAALIEARSCERFA 122 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHHHcccCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444444 46999998765 56799876555554 7777766544 445667778888777776555554
Done!