Query 029487
Match_columns 192
No_of_seqs 107 out of 839
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibx_A TENA, HP1287, putative 100.0 7.2E-45 2.5E-49 292.8 17.0 175 1-191 41-221 (221)
2 3mvu_A TENA family transcripti 100.0 2.5E-44 8.7E-49 290.6 18.0 172 1-191 43-226 (226)
3 3no6_A Transcriptional activat 100.0 9.8E-45 3.3E-49 296.8 15.7 174 1-191 56-237 (248)
4 4fn6_A Thiaminase-2, thiaminas 100.0 7.9E-44 2.7E-48 288.2 15.4 174 1-191 37-218 (229)
5 2qcx_A Transcriptional activat 100.0 8.6E-42 3E-46 281.5 21.7 173 1-191 64-242 (263)
6 2f2g_A SEED maturation protein 100.0 5.3E-42 1.8E-46 275.7 17.4 178 1-191 40-220 (221)
7 1wwm_A Hypothetical protein TT 100.0 1.4E-41 4.9E-46 267.9 18.9 159 1-189 31-190 (190)
8 3rm5_A Hydroxymethylpyrimidine 100.0 2E-41 6.8E-46 304.6 21.3 174 1-190 368-548 (550)
9 1z72_A Transcriptional regulat 100.0 1.9E-41 6.6E-46 273.2 18.2 169 1-190 50-224 (225)
10 1rtw_A Transcriptional activat 100.0 2.8E-41 9.5E-46 271.6 18.9 168 1-191 36-208 (220)
11 2gm8_A TENA homolog/THI-4 thia 100.0 1.4E-41 4.8E-46 273.6 17.1 170 1-191 45-220 (221)
12 1udd_A Transcriptional regulat 100.0 4.9E-40 1.7E-44 265.4 15.5 170 1-191 39-214 (226)
13 2qzc_A Transcriptional activat 100.0 2.7E-40 9.4E-45 264.7 13.1 164 1-191 41-209 (214)
14 2a2m_A Hypothetical protein BT 100.0 4E-38 1.4E-42 259.0 17.7 164 1-191 84-251 (258)
15 3oql_A TENA homolog; transcrip 100.0 2.6E-30 9E-35 212.1 10.8 174 1-191 55-247 (262)
16 1rcw_A CT610, CADD; iron, DI-i 99.9 8.9E-26 3E-30 181.5 7.6 166 1-191 40-221 (231)
17 3dde_A TENA/THI-4 protein, dom 99.8 5.2E-20 1.8E-24 149.1 11.2 171 1-190 41-219 (239)
18 3hlx_A Pyrroloquinoline-quinon 99.8 1.3E-19 4.6E-24 148.3 12.5 166 1-190 43-227 (258)
19 3bjd_A Putative 3-oxoacyl-(acy 99.7 1.8E-15 6.3E-20 128.0 14.3 168 1-190 142-324 (332)
20 3b5o_A CADD-like protein of un 98.4 1.2E-05 4.1E-10 64.4 14.9 162 2-188 42-225 (244)
21 1wov_A Heme oxygenase 2; HOMO 79.4 13 0.00046 29.3 9.2 82 62-149 88-181 (250)
22 1we1_A Heme oxygenase 1; oxido 73.2 18 0.00062 28.3 8.3 81 62-149 89-178 (240)
23 1wzd_A Heme oxygenase; electro 70.3 5 0.00017 30.9 4.3 78 68-149 100-183 (215)
24 2juw_A UPF0352 protein SO_2176 57.0 26 0.00088 22.8 5.0 49 129-179 6-66 (80)
25 2veb_A Protoglobin; hemoprotei 56.9 16 0.00056 27.9 4.8 27 165-191 165-191 (195)
26 2jpq_A UPF0352 protein VP2129; 56.5 26 0.00089 22.9 5.0 49 129-179 6-66 (83)
27 2juz_A UPF0352 protein HI0840; 53.7 25 0.00085 22.8 4.6 49 129-179 6-66 (80)
28 2jr2_A UPF0352 protein CPS_261 52.6 43 0.0015 21.5 5.8 48 129-179 6-65 (76)
29 2jrx_A UPF0352 protein YEJL; h 49.2 27 0.00092 22.8 4.2 49 129-179 6-66 (83)
30 1j02_A Heme oxygenase 1; alpha 49.0 98 0.0033 24.5 9.6 82 62-149 98-189 (267)
31 3l9k_W Dynein intermediate cha 48.3 27 0.00094 19.4 3.6 24 128-151 8-31 (38)
32 2q32_A Heme oxygenase 2, HO-2; 48.0 1E+02 0.0034 24.4 11.0 85 62-149 118-209 (264)
33 1xkp_A Putative membrane-bound 43.6 83 0.0028 24.8 7.2 35 119-153 181-216 (246)
34 1vp7_A Exodeoxyribonuclease VI 42.6 58 0.002 22.1 5.3 39 131-180 28-66 (100)
35 1unk_A Colicin E7; immunity pr 39.4 30 0.001 22.9 3.3 39 127-179 7-46 (87)
36 1n45_A Heme oxygenase 1, HO-1; 38.2 1.3E+02 0.0046 23.0 9.1 20 67-86 104-123 (233)
37 3bey_A Conserved protein O2701 36.8 31 0.001 22.3 3.2 61 3-67 7-70 (96)
38 3u43_A Colicin-E2 immunity pro 34.0 54 0.0019 22.0 4.0 38 127-178 7-44 (94)
39 2vj4_A Protein MXIC, MXIC; sec 27.1 47 0.0016 27.0 3.3 28 119-146 134-161 (294)
40 4dnd_A Syntaxin-10, SYN10; str 24.4 1.4E+02 0.0047 21.0 5.0 48 97-151 28-81 (130)
41 2f3y_B Voltage-dependent L-typ 23.1 29 0.001 17.5 0.8 7 3-9 5-11 (26)
42 2k0d_X IMME7, colicin-E7 immun 22.9 1.5E+02 0.0051 20.1 4.6 47 127-186 14-64 (101)
43 2ouw_A Alkylhydroperoxidase AH 21.6 1.1E+02 0.0038 21.0 4.1 61 6-67 43-104 (138)
No 1
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=100.00 E-value=7.2e-45 Score=292.82 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=159.4
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||++|+|+++.+++|+| + .++++.+.+.+.++.+ |+++|+.+++++|++.++ .+++|+|++
T Consensus 41 f~~YL~QD~~yl~~~~r~~a~~~aka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~a 115 (221)
T 3ibx_A 41 FRFYIIQDYLYLLEYAKVFALGVVKAC---D--EAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKS 115 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC---S--HHHHHHHHHHHHHHHSCTTSHHHHHHHHTTCCHHHHHHCCCCHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCCHHHHH
Confidence 689999999999999999999999999 4 5678999999988865 999999999999998754 688999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||++++. ++..+++||+||.|+|.++|+.+.... ...++++|++||++|+|++|.++|++++++||+++...+
T Consensus 116 Y~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~--~~~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~ 193 (221)
T 3ibx_A 116 YTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIP--NALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASS 193 (221)
T ss_dssp HHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSS--STTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999876 899999999999999999999887322 113578999999999999999999999999999998888
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+ +++++|+++|+++|+||++||||||++
T Consensus 194 ~---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 221 (221)
T 3ibx_A 194 K---------QEIEKLKEIFITTSEYEYLFWDMAYQS 221 (221)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 899999999999999999999999974
No 2
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=100.00 E-value=2.5e-44 Score=290.61 Aligned_cols=172 Identities=19% Similarity=0.221 Sum_probs=157.4
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++++++|+| + .+++..+...+.++.+ |+++|+.+++++|++.++ .+++|+|++
T Consensus 43 f~~YL~QD~~yl~~~~r~~a~~~aka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~a 117 (226)
T 3mvu_A 43 FLHYLQQDYVFLIHFSRAWALAVVKSE---T--HSEMLAAVGTVNALVAEEMQLHIGICEASGISQEALFATRERAENLA 117 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---S--HHHHHHHHHHHHHHHTTHHHHHHHHHHHTTCCHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCCHHHHH
Confidence 689999999999999999999999999 4 5679999999999886 999999999999998753 678999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHH-----HH
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIAN-----RL 149 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld-----~~ 149 (192)
|++||++++. ++..+++||+||.|+|.++|+.+.... ++++|++||++|+|++|.++|++++++|| ++
T Consensus 118 Y~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~-----~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~ 192 (226)
T 3mvu_A 118 YTRFVLEAGYSGDLLDLLAALAPCVMGYGEIGKRLTAEA-----TSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRL 192 (226)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC-----SCSTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcchHHHHHcCCHHHHHHHHHHHHHHCchhHHHH
Confidence 9999999876 889999999999999999999887321 36899999999999999999999999999 88
Q ss_pred Hh-hcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 150 LE-KASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+. .+++ +++++|+++|+++|+||++||||||+.
T Consensus 193 ~~~~~~~---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 226 (226)
T 3mvu_A 193 GAEFTSS---------PRWSRLCQTFHTATELEVGFWQMGLTP 226 (226)
T ss_dssp CTTGGGS---------HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhccCh---------HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77 6676 899999999999999999999999974
No 3
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=100.00 E-value=9.8e-45 Score=296.79 Aligned_cols=174 Identities=15% Similarity=0.126 Sum_probs=157.6
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCC----CCCCchHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELS----ETVPQKANQ 75 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~----~~~~~p~t~ 75 (192)
|++||+||++||.+|+|+++++++||| + .+++..+.+.+.++.+ |+++|+++++++||+.+ ..+++|+|+
T Consensus 56 F~~YL~QD~~YL~~far~~a~a~aka~---~--~~~~~~~~~~~~~~~~~E~~lh~~~~~~~gi~~~~~~~~~~~~p~~~ 130 (248)
T 3no6_A 56 VRQYLRADASYLKEFTNIYAMLIPKMS---S--MEDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGD 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCS---C--HHHHHHHHHHHHHHHTCCCHHHHHHHHHTTSCHHHHCCSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcCCCHHHH
Confidence 789999999999999999999999999 4 5679999999998765 99999999999999864 358899999
Q ss_pred HHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhh
Q 029487 76 VYCRFLESLMS---PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEK 152 (192)
Q Consensus 76 ~Y~~~l~~~a~---~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~ 152 (192)
+|++||++++. ++..+++||+||+|+|.++|+.+.... ...++++|++||++|+ ++|.++|++++++||+++..
T Consensus 131 aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~--~~~~~~~Y~~WI~~Y~-~ef~~~v~~~~~~ld~~~~~ 207 (248)
T 3no6_A 131 HYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDP--KLNKESVTSKWFQFYS-TEMDELVDVFDQLMDRLTKH 207 (248)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCT--TCCTTSTTHHHHHHHH-HHTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 99999998764 689999999999999999999887432 1125789999999999 99999999999999999988
Q ss_pred cchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 153 ASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+++ +++++|+++|+++|+||++||||||+.
T Consensus 208 ~s~---------~~~~~l~~~F~~a~~lE~~Fwd~ay~~ 237 (248)
T 3no6_A 208 CSE---------TEKKEIKENFLQSTIHERHFFNMAYIN 237 (248)
T ss_dssp CCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCH---------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 887 899999999999999999999999964
No 4
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-44 Score=288.22 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=157.1
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC----CCCchHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE----TVPQKANQ 75 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~----~~~~p~t~ 75 (192)
|++||+||++||.+|+|+++++++|+| + .+++..+.+.+.++.+ |+++|+.+++.+|++.++ .+++|+|.
T Consensus 37 f~~YL~QDy~yl~~~~r~~a~~~aka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~~~~~p~~~ 111 (229)
T 4fn6_A 37 LRHYLQADAAYLKEFTNLYALLIPKMN---S--MNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGD 111 (229)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHSTTCC---S--HHHHHHHHHHHHHHHSCCCHHHHHHHHHHTSCHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcCCCHHHH
Confidence 689999999999999999999999999 4 5679999999998765 999999999999998753 58899999
Q ss_pred HHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhh
Q 029487 76 VYCRFLESLMS---PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEK 152 (192)
Q Consensus 76 ~Y~~~l~~~a~---~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~ 152 (192)
+|++||++++. ++..+++||+||+|+|.++|+.+.... ...++++|++||++|+ ++|.++|++++++||+++..
T Consensus 112 aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~--~~~~~~~y~~WI~~y~-~~f~~~v~~~~~~ld~~~~~ 188 (229)
T 4fn6_A 112 HYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDH--KLNREKDTAKWFDFYS-TEMDDIINVFESLMNKLAES 188 (229)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCT--TCCTTSTHHHHHHHHT-TTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCChHHHHHHHHh-HHHHHHHHHHHHHHHHHHhh
Confidence 99999998754 688999999999999999999887322 1125789999999999 99999999999999999988
Q ss_pred cchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 153 ASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
.++ +++++|+++|+++|+||++||||||+.
T Consensus 189 ~~~---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 218 (229)
T 4fn6_A 189 MSD---------KELEQVKQVFLESCIHERRFFNMAMTL 218 (229)
T ss_dssp SCH---------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCH---------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 887 899999999999999999999999975
No 5
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=100.00 E-value=8.6e-42 Score=281.54 Aligned_cols=173 Identities=18% Similarity=0.207 Sum_probs=158.5
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++.+++|+| + .++++.+...+..+.+ |+++|+.+++++||+.++ .+|+|+|++
T Consensus 64 f~~YL~QDy~yL~~f~r~la~a~aka~---~--~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~l~~~~~~pat~a 138 (263)
T 2qcx_A 64 FKYYVLQDSYYLTHFAKVQSFGAAYAK---D--LYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYS 138 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS---S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCChHHHH
Confidence 689999999999999999999999999 4 5679999999998766 999999999999998753 688999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||++++. ++..+++||+||.|+|..+|+.+... .. ++++|++||++|++++|.+.|++++++||+++..++
T Consensus 139 Yt~~l~~~a~~g~~~~~laAl~pC~w~Y~~ig~~l~~~---~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s 214 (263)
T 2qcx_A 139 FTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHC---DP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENST 214 (263)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTC---CC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---cC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999876 78999999999999999999988632 22 469999999999999999999999999999998888
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+ ++++++.++|+++|+||++||||||+.
T Consensus 215 ~---------~~~~~l~~~F~~a~~lE~~Fwd~a~~~ 242 (263)
T 2qcx_A 215 E---------EVRAKMKENFVISSYYEYQFWGMAYRK 242 (263)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 889999999999999999999999974
No 6
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*
Probab=100.00 E-value=5.3e-42 Score=275.70 Aligned_cols=178 Identities=52% Similarity=0.803 Sum_probs=156.4
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRF 80 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~~~~~p~t~~Y~~~ 80 (192)
|++||+||++||++|+|+++.+++|+|++++ +.+.++.+...+..+.+|+++|+++++++|++....+|+|+|++|++|
T Consensus 40 f~~yL~QDy~yl~~f~r~~a~~~~ka~~~~~-~~~~~~~l~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~p~~~aY~~~ 118 (221)
T 2f2g_A 40 FRTWLGQDYLFVRRFVPFVASVLIRACKDSG-ESSDMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRF 118 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS-CTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCCCHHHHHHHHH
Confidence 6899999999999999999999999996431 012288999999885569999999999999998667899999999999
Q ss_pred HHHh-cC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029487 81 LESL-MS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 157 (192)
Q Consensus 81 l~~~-a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~ 157 (192)
|+++ +. ++..+++||+||.|+|.++|+.+.... ... + ++|++||++|+|++|.+.|++++++||+++...++
T Consensus 119 l~~~~~~~~~~~~~~aAl~pc~~~Y~~i~~~l~~~~-~~~-~-~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~-- 193 (221)
T 2f2g_A 119 LEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDG-NKT-P-VELTGACHRWGNDGFKQYCSSVKNIAERCLENASG-- 193 (221)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHH-HTS-S-SCCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCH--
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC-C-cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH--
Confidence 9999 76 789999999999999999998876311 111 2 38999999999999999999999999999988887
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 158 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
++++++.++|+++|+||++||||||++
T Consensus 194 -------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 220 (221)
T 2f2g_A 194 -------EVLGEAEDVLVRVLELEVAFWEMSRGG 220 (221)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999975
No 7
>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structu genomics; 2.61A {Thermus thermophilus} SCOP: a.132.1.3
Probab=100.00 E-value=1.4e-41 Score=267.85 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=144.9
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRF 80 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~~~~~p~t~~Y~~~ 80 (192)
|++||+||++||.+|+|+++++++||| + .+ ++.+...++++.+| .++++++||+. ..+++|+|++|++|
T Consensus 31 f~~Yl~QD~~yL~~f~r~~a~~~~ka~---~--~~-~~~~~~~~~~~~~E----~~~~~~~gi~~-~~~~~p~~~aY~~~ 99 (190)
T 1wwm_A 31 FRFWLQQDYPFVEALYRYQVGLLLEAP---Q--AH-RAPLVQALMATVEE----LDWLLLQGASP-SAPVHPVRAGYIAL 99 (190)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCC---H--HH-HHHHHHHHHHHHHH----HHHHHTTTCCS-SSCCCHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCC---h--HH-HHHHHHHHHHHHHH----HHHHHHcCCCC-CCCCCHHHHHHHHH
Confidence 689999999999999999999999999 5 66 99999999988557 67888899997 67889999999999
Q ss_pred HHHhcC-CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhh
Q 029487 81 LESLMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIM 159 (192)
Q Consensus 81 l~~~a~-~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~~~ 159 (192)
|++++. ++..+++||+||+|+|.++|+.+. + ++++|++||++|+||+|.++|+++++++|+++...++
T Consensus 100 l~~~a~~~~~~~~aAl~pc~~~Y~~ig~~l~---~----~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~---- 168 (190)
T 1wwm_A 100 LEEMGRLPYAYRVVFFYFLNGLFLEAWAHHV---P----EEGPWAELSQHWFAPEFQAVLYDLEVLARGLWEDLDP---- 168 (190)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHS---C----SSSHHHHHHHHHSCTTHHHHHHHHHHHHHHHHTTSCH----
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHhc---c----CCcHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhCCH----
Confidence 999876 889999999999999999999876 2 3578999999999999999999999999999988775
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhHhhh
Q 029487 160 GKAGDDVLKKAEVELIRVLEHEVEFWNMSR 189 (192)
Q Consensus 160 ~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~ 189 (192)
++ ++++|+++|+||++||||||
T Consensus 169 -----~~---~~~~F~~a~~lE~~Fwd~a~ 190 (190)
T 1wwm_A 169 -----EV---VRTYLRRILEAEKATWSLLL 190 (190)
T ss_dssp -----HH---HHHHHHHHHHHHHHHHHTTC
T ss_pred -----HH---HHHHHHHHHHHHHHHHHhhC
Confidence 33 99999999999999999986
No 8
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=304.56 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=156.8
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHH-HHHHhCC-CCCC---CCCchHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKK-EASKWGV-ELSE---TVPQKANQ 75 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-~~~~~gi-~~~~---~~~~p~t~ 75 (192)
|++||+||++||.+|+|+++++++|+| + .+++..+...+.++.+|+++|+. +++++|| +.++ .+++|+|+
T Consensus 368 F~~YL~QD~~yL~~far~~a~a~aka~---~--~~~~~~~~~~~~~i~~E~~~h~~~~~~~~gi~~~~~~~~~~~~p~~~ 442 (550)
T 3rm5_A 368 FQFFIEQDYAYLVDYARVHCIAGSKAP---C--LEDMEKELVIVGGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPALR 442 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS---S--HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTTTTSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCCCHHHH
Confidence 789999999999999999999999999 4 56788888988888889999999 6679999 6543 68899999
Q ss_pred HHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhc
Q 029487 76 VYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKA 153 (192)
Q Consensus 76 ~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~ 153 (192)
+|++||++++. ++.++++||+||+|+|.++|+.+.... ...++++|++||++|+|++|.++|+++++++|++++.+
T Consensus 443 aYt~~l~~~a~~g~~~~~~aAl~pC~~~Y~~ig~~l~~~~--~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~ 520 (550)
T 3rm5_A 443 AYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKV--TAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETY 520 (550)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTCC--CSCTTSHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999877 789999999999999999999775221 12357899999999999999999999999999999888
Q ss_pred chhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 154 SDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
++ +++++|+++|+++|+||++||||||+
T Consensus 521 ~~---------~~~~~l~~~F~~a~~lE~~Fwd~a~~ 548 (550)
T 3rm5_A 521 PP---------EQLDTLVTIYAEVCELETNFWTAALE 548 (550)
T ss_dssp CG---------GGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CH---------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87 89999999999999999999999986
No 9
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=100.00 E-value=1.9e-41 Score=273.23 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=152.0
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++.+++|+| + .++++.+...+.++.+ |+.+|+.+++++||+.++ .+|+|+|++
T Consensus 50 f~~YL~QDy~yl~~f~r~~a~~~~ka~---~--~~~~~~~~~~~~~~~~~E~~~~~~~~~~~Gi~~~~~~~~~~~p~t~a 124 (225)
T 1z72_A 50 LKDYLIQDYHFFDAFLSMLGACVAHAD---K--LESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKA 124 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999 4 5679999999998765 999999999999998764 688999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||++++. ++..+++||+||.|+|..+|+. . .. .+++++|++||++|++++|.+.|++++++||+++.. +
T Consensus 125 Y~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~i~~~-~---~~-~~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~~~~-~ 198 (225)
T 1z72_A 125 FQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSK-D---LA-LPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKN-R 198 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTC-S---SC-CCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHh-h---cc-CCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC-C
Confidence 9999999876 8899999999999999999986 3 22 235689999999999999999999999999999887 6
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
+ +++ ++.++|+++|+||++||||||+
T Consensus 199 ~---------~~~-~~~~~f~~a~~lE~~Fwd~a~~ 224 (225)
T 1z72_A 199 E---------DLT-ELQQRWNQAVALELAFFDIGYD 224 (225)
T ss_dssp C---------CHH-HHHHHHHHHHHHHHHHTTTTC-
T ss_pred H---------HHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 6 677 9999999999999999999986
No 10
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=100.00 E-value=2.8e-41 Score=271.63 Aligned_cols=168 Identities=24% Similarity=0.267 Sum_probs=152.9
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhh---HHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCchHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGD---TEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVY 77 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~---~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~~~~~p~t~~Y 77 (192)
|++||+||++||.+|+|+++.+++|+|+ .++ ++.+...+.++ |+++|+ ++++||+. ..+|+|+|++|
T Consensus 36 f~~YL~QDy~yl~~f~r~~a~~~~ka~~-----~~~~~~~~~l~~~~~~i--E~~lh~--~~~~Gi~~-~~~~~p~t~aY 105 (220)
T 1rtw_A 36 FEKWLVNDYYFVKNALRFMALLMAKAPD-----DLLPFFAESIYYISKEL--EMFEKK--AQELGISL-NGEIDWRAKSY 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCG-----GGHHHHHHHHHHHHHHH--HHHHHH--HHHTTCCS-SSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-----hhhHHHHHHHHHHHHHH--HHHHHH--HHHCCCCC-CCCCCHHHHHH
Confidence 6899999999999999999999999994 556 88999999887 999999 89999998 67899999999
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcch
Q 029487 78 CRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 155 (192)
Q Consensus 78 ~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~ 155 (192)
++||++++. ++..+++||+||.|+|.++|+.+.... . ++++|++||++|+|++|.+.|++++++||+++...++
T Consensus 106 ~~~l~~~a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~~---~-~~~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~ 181 (220)
T 1rtw_A 106 VNYLLSVASLGSFLEGFTALYCEEKAYYEAWKWVRENL---K-ERSPYQEFINHWSSQEFGEYVKRIEKILNSLAEKHGE 181 (220)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC---S-SCCTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhcc---C-CCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH
Confidence 999999876 889999999999999999999887432 1 4589999999999999999999999999999988887
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 156 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
++++++.++|+++|+||++||||+|+.
T Consensus 182 ---------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 208 (220)
T 1rtw_A 182 ---------FEKERAREVFKEVSKFELIFWDIAYGG 208 (220)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999999964
No 11
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=100.00 E-value=1.4e-41 Score=273.57 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=152.5
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++.+++|+| + .++++.+...+.++.+ |+++|+++++++||+.++ .+|+|+|.+
T Consensus 45 f~~YL~QDy~yl~~f~r~~a~~~~ka~---~--~~~~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~~~~~~~~p~t~a 119 (221)
T 2gm8_A 45 FKYYLLQDYNYLVNFAKALSLAASRAP---S--VDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVS 119 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCS---S--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCCHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCChHHHH
Confidence 689999999999999999999999999 4 5679999999998655 999999999999998754 688999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||++++. ++..+++||+||.|+|.++|+.+..... + .++++|++||++|+|++|.+.|+++++++|++
T Consensus 120 Y~~~l~~~a~~~~~~~~laAl~pc~~~Y~~ig~~l~~~~~-~-~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~----- 192 (221)
T 2gm8_A 120 YMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLR-E-NPVHVYKKWASVYLSPEYRGLVERLRAVLDSS----- 192 (221)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHGGGGG-G-CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHHhccC-C-CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHh-----
Confidence 9999999876 7899999999999999999998874321 1 24699999999999999999999999999987
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+ ++++++.++|+++|+||++||||||++
T Consensus 193 ~---------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 220 (221)
T 2gm8_A 193 G---------LSAEELWPYFKEASLYELEFWQAAYEG 220 (221)
T ss_dssp S---------CCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred h---------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 456799999999999999999999975
No 12
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=100.00 E-value=4.9e-40 Score=265.36 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=149.8
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhH-HHHHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL-HDEIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++.+++|+ +++ +++.+...+.++ .+|+++|+++++++||+.++ .+|+|+|.+
T Consensus 39 f~~YL~QDy~yl~~f~r~~a~~~~ka-~~~-----~~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~~~~~~~~p~t~a 112 (226)
T 1udd_A 39 FKFYVLQDFNYLVGLTRALAVISSKA-EYP-----LMAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSA 112 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CTT-----HHHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCCHHHHH
Confidence 68999999999999999999999999 754 588999999885 45999999999999998753 688999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcc
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 154 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~ 154 (192)
|++||++++. ++..+++||+||.|+|..+|+.+..... + .++++|++||++|+|++|.+.|+.++++||++ +
T Consensus 113 Y~~~l~~~a~~~~~~~~laAl~pc~~~Y~~ig~~l~~~~~-~-~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~----~ 186 (226)
T 1udd_A 113 YMDFMLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLR-D-NPIKIYREWGKVYLSNEYLNLVGRLRKIIDSS----G 186 (226)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTHHHHT-T-CSCHHHHHHHHGGGSHHHHHHHHHHHHHHHTS----C
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CCCchHHHHHHHhCCHHHHHHHHHHHHHHHhC----c
Confidence 9999999876 7899999999999999999998864321 1 24699999999999999999999999999987 2
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 155 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
. ++++++.++|+++|+||++||||||+.
T Consensus 187 ~---------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 214 (226)
T 1udd_A 187 H---------SGYDRLRRIFITGSKFELAFWEMAWRG 214 (226)
T ss_dssp S---------SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred h---------hHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 235689999999999999999999964
No 13
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=100.00 E-value=2.7e-40 Score=264.71 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=147.7
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhH-HHHHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL-HDEIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||++|+|+++.+++|| ++ ++++.+...+.++ .+|+++|+++++++|++.++ .+|+|+|++
T Consensus 41 f~~Yl~QDy~yl~~f~r~~a~~~~ka-~~-----~~~~~~~~~~~~~i~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~t~a 114 (214)
T 2qzc_A 41 FRYYLIQDGKYVEDMLRALLIASSKG-PI-----DKVTKILNLVFSSRDKGLETHGKLYSKLDISRDVIVKTGYNLINYA 114 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-CH-----HHHHHHHHHHTCC--CHHHHHHHHHHHTTCCHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCChHHHH
Confidence 68999999999999999999999999 64 4689999999985 45999999999999998754 688999999
Q ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcch
Q 029487 77 YCRFLESLMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 155 (192)
Q Consensus 77 Y~~~l~~~a~-~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~~~~ 155 (192)
|++||++++. +...+++||+||.|+|.++|+.+. +. ++++|++||++|+|++|.+.|+++++++|++ +
T Consensus 115 Y~~~l~~~a~~~~~~~~aAl~pc~~~Y~~ig~~l~---~~---~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~-----~ 183 (214)
T 2qzc_A 115 YTRHLYYYANLDWNKFLVAWTPCMFGYSIVGDYVI---DS---PNEVYKTWASFYASTEYKKRIEAILYALDEV-----S 183 (214)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT---TC---SCHHHHHHHHHHHSHHHHHHHHHHHHHHTTS-----C
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH---hC---CCChHHHHHHHhCCHHHHHHHHHHHHHHHhC-----c
Confidence 9999999866 889999999999999999999876 32 4589999999999999999999999999987 2
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 156 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
++++ +.++|+++|+||++||||||+.
T Consensus 184 ---------~~~~-~~~~f~~a~~~E~~Fwd~a~~~ 209 (214)
T 2qzc_A 184 ---------ITED-LLNIFINSVRFEIGFWDASLRK 209 (214)
T ss_dssp ---------CCHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------cHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567 9999999999999999999964
No 14
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=100.00 E-value=4e-38 Score=258.97 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=146.4
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCC-CCCchHHHHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE-TVPQKANQVYCR 79 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~-~~~~p~t~~Y~~ 79 (192)
|++||+||++||.+|+|+++++++|||+ + +++.+...+.++.+ ++|+++++++||+.++ .+++|+|++|++
T Consensus 84 F~~YL~QDy~yL~~far~~a~a~aka~~-~-----~~~~~~~~~~~~~~--~lh~~~~~~~Gi~~~~~~~~~pat~aYt~ 155 (258)
T 2a2m_A 84 YGSLMVQDGYYCFRGRDDYATAATCAQD-E-----TLREFFKAKAKSYD--EYNETYHQTWHLREASGLIPGTDIKDYAD 155 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSS-H-----HHHHHHHHHHHHHH--HHHHHHHHTSCBCCGGGBCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc-H-----HHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHccCCCHHHHHHHH
Confidence 6899999999999999999999999995 3 58888888888766 9999999999999876 688999999999
Q ss_pred HHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH-hhCChHHHHHHHHHHHHHHHHHhhcchh
Q 029487 80 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ-RWGNDGFGQYCHSLKKIANRLLEKASDD 156 (192)
Q Consensus 80 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~-~y~~~~f~~~v~~l~~~ld~~~~~~~~~ 156 (192)
||++++. ++.++++||+||+|+|.++|+.+.... . ++++|++||+ +|+|+ +.|++++++||+++...+
T Consensus 156 ~ll~~a~~g~~~~~laAl~pC~~~Y~eig~~l~~~~---~-~~~~Y~~WI~~~Y~~~---~~v~~~~~lld~~~~~~~-- 226 (258)
T 2a2m_A 156 YEAYVAGSLASPYMCVVMLPCEYLWPWIANFLDGYT---P-TNSLYRFWIEWNGGTP---NGAYQMGNMLEQYRDKID-- 226 (258)
T ss_dssp HHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHGGGS---C-TTSTTHHHHHHHCSCC---HHHHHHHHHHHTTGGGSC--
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc---C-CCchHHHHHHhccCCH---HHHHHHHHHHHHHHhhcc--
Confidence 9999876 899999999999999999999887432 1 4589999999 99999 899999999999875432
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 157 LIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 157 ~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
+++|+++|+++|+||++||||||+.
T Consensus 227 ----------~~~l~~~F~~a~~lE~~Fwd~a~~~ 251 (258)
T 2a2m_A 227 ----------EDKAVEIFNTAMNYELKVFTSSTIL 251 (258)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5689999999999999999999975
No 15
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=99.96 E-value=2.6e-30 Score=212.12 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=136.7
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHHHH---HHHHHHHHHhCCCCCC---CCCchHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEI---AWFKKEASKWGVELSE---TVPQKAN 74 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~E~---~~~~~~~~~~gi~~~~---~~~~p~t 74 (192)
|++||+||++||.+|+|+++++++|+++..+ .++.........++..|+ ++|+++++.+||+.++ .+++|+|
T Consensus 55 Fr~Yl~QDy~YL~~far~~Al~~aKa~~~~~--~~~~~~~~~l~~~i~vE~~H~~~~~~f~~~~Gis~eel~~~~~~P~~ 132 (262)
T 3oql_A 55 MRQYLIGGWPVVEQFAVYMAKNLTKTRFGRH--PGEDMARRWLMRNIRVELNHADYWVNWCAAHDVTLEDLHDQRVAPEL 132 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTSC--HHHHHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHHHHHTCSCGGG
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCccccC--CChHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCHHHHhcCCCChHH
Confidence 7899999999999999999999999986432 122111222234444565 3445789999999865 6889999
Q ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHH---------HHhcccCCCCCCChhHHHHHHhhCChHHHHH-HHHH
Q 029487 75 QVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQE---------SFAHCLEPDTNTPPELQEVCQRWGNDGFGQY-CHSL 142 (192)
Q Consensus 75 ~~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~---------~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~-v~~l 142 (192)
.+||+||++++. ++.++++|++ +|.|++||+ .+.... +...++.|.+||+.|+ +|... +...
T Consensus 133 ~aYt~~ml~~a~~g~l~e~lAAl~--ya~e~~ig~~s~~~~~g~~~~~~~--~~~~~~~~~~w~~~h~--~~D~~H~~e~ 206 (262)
T 3oql_A 133 HALSHWCWQTSSSDSLAVAMAATN--YAIEGATGEWSAVVCSTGVYAEAF--AEETRKKSMKWLKMHA--QYDDAHPWEA 206 (262)
T ss_dssp GHHHHHHHHHHHHSCHHHHHHHTT--THHHHHHHHHHHHHHSSSHHHHTS--CHHHHHHHHHHHHHHH--TCC-CHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHH--HHHHHHhhhHHHHhhhhHHHhcCC--CcccChHHHHHHHHHH--HHHHHhHHHH
Confidence 999999999876 6777777777 999999998 443211 1112567999999999 88888 9999
Q ss_pred HHHHHHHHhhc-chhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 143 KKIANRLLEKA-SDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 143 ~~~ld~~~~~~-~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
.+++|+++... ++ ++++++.++|++++.+|+.||||||+.
T Consensus 207 ~~li~~l~~~~~~~---------~e~~~~~~a~~~S~~~~~~fld~~y~~ 247 (262)
T 3oql_A 207 LEIICTLVGNKPSL---------QLQAELRQAVTKSYDYMYLFLERCIQL 247 (262)
T ss_dssp HHHHHHHHCSSCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999766 66 889999999999999999999999963
No 16
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=99.92 E-value=8.9e-26 Score=181.55 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=129.7
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHH----HHHHHHHHHHHHhCCCCCC---CCCchH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLH----DEIAWFKKEASKWGVELSE---TVPQKA 73 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~----~E~~~~~~~~~~~gi~~~~---~~~~p~ 73 (192)
|++||+||++||.+|.|+++.+++|+|+ .+.++.+...+.... .|+.+|.++++.+|++.++ .++.|+
T Consensus 40 ~~~yl~qdy~yl~~f~~~~a~~~~~~~~-----~~~~~~~~~~i~~e~~~~~~h~~l~~~~~~~~Gi~~~~~~~~~~~p~ 114 (231)
T 1rcw_A 40 LQAYAKDYYLHIKAFPKYLSAIHSRCDD-----LEARKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEELEAHEPSEA 114 (231)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHHHHHCCCCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHcCCCHHHHhcCCCCHH
Confidence 6899999999999999999999999994 445666666554432 3699999999999998754 578999
Q ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHH-------HHHHHHHHH
Q 029487 74 NQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGF-------GQYCHSLKK 144 (192)
Q Consensus 74 t~~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f-------~~~v~~l~~ 144 (192)
|++|++||++++. ++...++++ ++|..++..|.... ....++|.+||+.|+++.| .+-++.+.+
T Consensus 115 t~~y~~~~~~~~~~~~~~~~laal----~~~E~~~~~~~~~~---~~~~~~~~~wi~~~~~~~f~~h~~~d~~h~~~~~~ 187 (231)
T 1rcw_A 115 AKAKVATFMRWCTGDSLAAGVAAL----YSYESQIPRIAREK---IRGLTEYFGFSNPEDYAYFTEHEEADVRHAREEKA 187 (231)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHH----HHHHTTHHHHHHHH---HHHHHHHSCCCSGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHCCCCChhhhHHHHHHHHHhHHHHHHHHH
Confidence 9999999999876 444444442 36777777775321 1111355589999999999 677899999
Q ss_pred HHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 145 IANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 145 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
++|+++. ++++++.++|++++++|+.|||++|..
T Consensus 188 ~l~~~~~-------------~~~~~~~~~~~~~~~le~~fwd~~~~~ 221 (231)
T 1rcw_A 188 LIEMLLK-------------DDADKVLEASQEVTQSLYGFLDSFLDP 221 (231)
T ss_dssp HHHHHCS-------------SCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999875 235689999999999999999999864
No 17
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=99.82 E-value=5.2e-20 Score=149.07 Aligned_cols=171 Identities=8% Similarity=0.033 Sum_probs=134.4
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCC---CCCchHHHH
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSE---TVPQKANQV 76 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~~gi~~~~---~~~~p~t~~ 76 (192)
|++||+||++||.+|+|+++.+++|+|++. ...+..+...+....+ |..+++. ++.+|++.++ .+|+|+|.+
T Consensus 41 f~~yl~Qdy~yl~~~~r~la~a~~ka~~~~---~~~~~~~~~~~~~e~~~e~~~~~~-l~~~G~~~~~~~~~~~~pat~a 116 (239)
T 3dde_A 41 YAIYMTETYHYTKHNAKNQALVGIMGKDLP---GKYLSFCFHHAHEEAGHELMALSD-IASIGFDREDVLSSKPLPATET 116 (239)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHCSSCC---HHHHHHHHHHHHHHTTTHHHHHHH-HHHTTCCHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHHHHChHHHHHHH-HHHhCCCHHHHHhCCCChHHHH
Confidence 689999999999999999999999999532 1157777777766544 7666666 8999999754 578999999
Q ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccC--CCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhh
Q 029487 77 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLE--PDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEK 152 (192)
Q Consensus 77 Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~--~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ld~~~~~ 152 (192)
|++||++++. +...+++++.+|-|+| .++..+..... -+. + +...+|+..|+..+-. -++.++++||+++.
T Consensus 117 Y~~~l~~~a~~~~~~~~la~~~~~E~~y-~~~~~~~~~l~~~~~l-~-~~~~~f~~~h~~~d~~-h~~~~~~~ld~~~~- 191 (239)
T 3dde_A 117 LIAYLYWISATGNPVQRLGYSYWAENVY-GYIDPVLKAIQSTLDL-T-PQSMKFFIAHSKIDAK-HAEEVNEMLHEVCK- 191 (239)
T ss_dssp HHHHHHHHHHSSCGGGGHHHHHHHHTCH-HHHHHHHHHHHHHTTC-C-GGGGHHHHHHHHHHHH-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCc-C-HHHHHHHHHHHhcchh-HHHHHHHHHHHHcC-
Confidence 9999999865 7788899999998888 45554432111 122 2 2246999999987754 45789999999863
Q ss_pred cchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 153 ASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
++ ++++++.+..+.++++...||+..+.
T Consensus 192 -~~---------~~~~~ii~~a~~~~~l~~~~f~~l~~ 219 (239)
T 3dde_A 192 -TQ---------EDVDSVVAVMENSLVLTARILDDVWK 219 (239)
T ss_dssp -SH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 78899999999999999999998763
No 18
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=99.81 E-value=1.3e-19 Score=148.27 Aligned_cols=166 Identities=8% Similarity=-0.050 Sum_probs=127.4
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHhhHH------HHHHHHHHHHHHhCCCCCC---CC-C
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLH------DEIAWFKKEASKWGVELSE---TV-P 70 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~~~~~------~E~~~~~~~~~~~gi~~~~---~~-~ 70 (192)
|++|++||++|+.+|.+.++.+++|+| | .+.++.++..+.... +|+++|.++++.+|++.++ .+ +
T Consensus 43 ~r~yv~qdy~Yl~~f~r~~A~i~ak~~---d--~e~rr~l~~ni~~eeg~~~~~~hiel~~~fa~alGis~eel~~~~~~ 117 (258)
T 3hlx_A 43 IQGWVANRFYYQTTIPLKDAAIMANCP---D--AQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHV 117 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---C--HHHHHHHHHHHHHHHCSSSSCHHHHHHHHHHHHTTCCHHHHHTCCSC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCC---C--HHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHcCCCHHHHhhCCCC
Confidence 689999999999999999999999999 4 556777777665433 5789999999999999864 45 6
Q ss_pred chHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHH------
Q 029487 71 QKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSL------ 142 (192)
Q Consensus 71 ~p~t~~Y~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l------ 142 (192)
.|+|+.|++++.+.+. ++.++++|+++|.++=.++.+.+. +-++|..||+.++.+.|..-+.+.
T Consensus 118 ~P~t~~~vdaY~~~a~~~s~~e~vAA~L~E~~~p~i~~~r~~--------~~~~~y~~i~~~~l~yF~~h~~~a~~D~~h 189 (258)
T 3hlx_A 118 LPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLD--------SWPQHYPWIKEEGYFFFRSRLSQANRDVEH 189 (258)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHGGGGGGTHHHHHHHHHH--------HHHHHCTTSCGGGGHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhh--------cHHHhCCCCChhHHHHHHHHhhcccccHHH
Confidence 8999866666655543 788889888877655444433322 235677899999999998776444
Q ss_pred -HHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 143 -KKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 143 -~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
.+++-.. -.++ ++++++.+++..+|++++.|||++|.
T Consensus 190 al~~vl~~--~~t~---------e~q~~a~~a~~~~~~~lw~~lDa~~~ 227 (258)
T 3hlx_A 190 GLALAKAY--CDSA---------EKQNRMLEILQFKLDILWSMLDAMTM 227 (258)
T ss_dssp HHHHHHHH--CCSH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222 2255 88999999999999999999999873
No 19
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=99.65 E-value=1.8e-15 Score=128.03 Aligned_cols=168 Identities=10% Similarity=-0.007 Sum_probs=122.8
Q ss_pred ChhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH----hhHHHH---HHHHHHHHHHhCCCCCC--CCCc
Q 029487 1 MQFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM----AGLHDE---IAWFKKEASKWGVELSE--TVPQ 71 (192)
Q Consensus 1 f~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~~~~~----~~~~~E---~~~~~~~~~~~gi~~~~--~~~~ 71 (192)
|+.||+||++|+..|.+.++.+++++|+ .+.+..+.+.+ .+...| ..+|.++++.+|++.+. .++.
T Consensus 142 ~r~yl~Qdy~yl~~f~~~lA~~~a~~~~-----~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~~~~~~~~ 216 (332)
T 3bjd_A 142 LQVFLRHQWFRTFRLYRDAADLLVNLTD-----VDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEADFQAVSTM 216 (332)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCCS-----HHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChhHhcccCC
Confidence 5789999999999999999999999994 34455555532 221225 89999999999999763 4568
Q ss_pred hHHHHHHHHHHHhcC--CchHHHHHHH----HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHH
Q 029487 72 KANQVYCRFLESLMS--PEVDYTVAIT----VFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKI 145 (192)
Q Consensus 72 p~t~~Y~~~l~~~a~--~~~~~~~al~----pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~ 145 (192)
|+++.|++++...+. ++..+++++. ||.|+|..+++.+..... .....+.|++||+.-....+..+ ..+
T Consensus 217 p~~~~~v~~~~~~~~~~~~~~alaal~~~E~~~p~~y~~i~~~l~~~g~-~~~~~~yf~~HI~lD~~H~~~~~----~~l 291 (332)
T 3bjd_A 217 PEEIAYLNNRARAFRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAGL-SEDQAEYYKVHISLVPPRAKREW----QLI 291 (332)
T ss_dssp HHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CTTTTHHHHHHHHHCC---CTTH----HHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CcccchHHHHHHHHhHHHHHHHH----HHH
Confidence 999999999999754 7778888889 999999999998875321 11123789999999876554444 235
Q ss_pred HHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhhhc
Q 029487 146 ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 190 (192)
Q Consensus 146 ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a~~ 190 (192)
++++. ++ +....+..+-.+.+++++.|||..+.
T Consensus 292 l~~~~---~~---------~~q~~~~~a~~~~l~~~~~f~D~l~~ 324 (332)
T 3bjd_A 292 ARRIP---DV---------QFQNAFLTSLSQHFRVERAYYDAIWE 324 (332)
T ss_dssp HTTTT---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCC---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56542 22 33345666666666999999999764
No 20
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=98.41 E-value=1.2e-05 Score=64.35 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=101.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhh---HHHHHHHHhhHHHHH----------HHHHHHHH-HhCCCCCC
Q 029487 2 QFTLGQDYIFVREFVAFAASVLVKAWKESDDSKGD---TEVILGGMAGLHDEI----------AWFKKEAS-KWGVELSE 67 (192)
Q Consensus 2 ~~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~---~~~~~~~~~~~~~E~----------~~~~~~~~-~~gi~~~~ 67 (192)
+.+++|=+.| .|-++-+++++++. ..+ -....+...++.+|+ .+|.++++ .+|++++.
T Consensus 42 ~~f~~Q~s~F----~ryL~~l~~~~~~~----l~~~~~~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~ 113 (244)
T 3b5o_A 42 AYVMQQYSIF----PKELVGFTELARRK----ALGAGWNGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKN 113 (244)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHH----HHHHHHHHhhcccc----cccccchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCccc
Confidence 4677887755 66666666766631 011 122445556677786 49999999 99999998
Q ss_pred CCCchHHHHHHHHHHHhcC-CchHHHHH------H-HHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHH
Q 029487 68 TVPQKANQVYCRFLESLMS-PEVDYTVA------I-TVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYC 139 (192)
Q Consensus 68 ~~~~p~t~~Y~~~l~~~a~-~~~~~~~a------l-~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v 139 (192)
.+|.|+|+.+++-|.+..+ +....+.| + .|-+..|..+.+.+. ..+ -+..-..+.+.|..+.=..=.
T Consensus 114 ~~p~~sT~~~idt~~~lcs~d~~~aLGA~yatE~iaipe~~ly~~li~gL~---~~~--~~~~~l~FF~~HidelE~~Ha 188 (244)
T 3b5o_A 114 TMPSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVKLVEWLH---EGA--IPKDLQYFFSKHLDEWEIEHE 188 (244)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---SSC--CCHHHHHHHHHHHC-------
T ss_pred cCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---hCC--CchhHHHHHHHHhhhhHHHHH
Confidence 8999999999999999865 44333333 3 232335555555443 211 222344677777532212233
Q ss_pred HHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHHHHHhhHhh
Q 029487 140 HSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 188 (192)
Q Consensus 140 ~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~a 188 (192)
+.++++++...+ + +++.++.+-+++++.....||+.=
T Consensus 189 ~~l~~~l~~~~~---~---------eef~~~~~G~~~~Lda~~~fWdgL 225 (244)
T 3b5o_A 189 AGLRTSVAAYIQ---P---------EEFGEFAAGFRAMIDAMQVWWQEL 225 (244)
T ss_dssp CHHHHHHHTTCC---G---------GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---h---------HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654332 2 447899999999999999999963
No 21
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A*
Probab=79.42 E-value=13 Score=29.28 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=44.2
Q ss_pred CCCCC-CCCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH-------HHHHHHHhcccCCCCCCChhHHHHHHhhCC
Q 029487 62 GVELS-ETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIE-------AVYQESFAHCLEPDTNTPPELQEVCQRWGN 132 (192)
Q Consensus 62 gi~~~-~~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~y-------~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~ 132 (192)
|.+.. ..+|+|++..|++++..++. +...+++ -+|..| +.|.+.+.... +.+.+.. -.+...++.
T Consensus 88 g~~~~~~~~p~~a~~~yv~~i~~i~~~~P~~llg---h~Yv~y~g~lsGGq~i~~~l~k~l--~L~~~~g-~~fy~f~~~ 161 (250)
T 1wov_A 88 GPNWQQIIQPTPCAKIYVDRLKTIAASEPELLIA---HCYTRYLGDLSGGQSLKNIIRSAL--QLPEGEG-TAMYEFDSL 161 (250)
T ss_dssp CTTHHHHCCCCHHHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHTTHHHHHHHHHHHHT--TCCTTSS-CGGGCCTTC
T ss_pred CCCccccCCCChHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhc--CCCCccc-ceeeccCCc
Confidence 54432 36789999999999998764 3333333 334444 33333333222 2211111 023334443
Q ss_pred h---HHHHHHHHHHHHHHHH
Q 029487 133 D---GFGQYCHSLKKIANRL 149 (192)
Q Consensus 133 ~---~f~~~v~~l~~~ld~~ 149 (192)
+ +=..+.+.+++.+|++
T Consensus 162 ~~~~d~~~~k~~fr~~Ld~l 181 (250)
T 1wov_A 162 PTPGDRRQFKEIYRDVLNSL 181 (250)
T ss_dssp CSHHHHHHHHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHHhcC
Confidence 3 5566778888999986
No 22
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1
Probab=73.17 E-value=18 Score=28.32 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=41.9
Q ss_pred CCCCC-CCCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH-------HHHHHHHhcccCCCCCCChhHHHHHHhhCC
Q 029487 62 GVELS-ETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIE-------AVYQESFAHCLEPDTNTPPELQEVCQRWGN 132 (192)
Q Consensus 62 gi~~~-~~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~y-------~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~ 132 (192)
|.+.. ..+|+|++..|++++..++. +...+++ -+|..| +.+++.+.... +.+.+.. .+...++.
T Consensus 89 g~~~~~~~~p~~a~~~yv~~i~~i~~~~P~~llg---~~Yv~y~g~lsGGq~i~~~~~~~l--~L~~~g~--~fy~f~~~ 161 (240)
T 1we1_A 89 GSNWRQEVKISAAGQAYVDRVRQVAATAPELLVA---HSYTRYLGDLSGGQILKKIAQNAM--NLHDGGT--AFYEFADI 161 (240)
T ss_dssp CTTHHHHCCCCHHHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHHHHHHHHHHHHHH--TCSSSSC--GGGCCTTC
T ss_pred CCCccccCCCCHHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhc--CcCcccc--hhcccCCc
Confidence 54432 35788999999999998765 3333333 233333 33333333211 1111111 23333443
Q ss_pred hHHHHHHHHHHHHHHHH
Q 029487 133 DGFGQYCHSLKKIANRL 149 (192)
Q Consensus 133 ~~f~~~v~~l~~~ld~~ 149 (192)
++=..+.+.+++.+|++
T Consensus 162 ~d~~~~k~~fr~~Ld~l 178 (240)
T 1we1_A 162 DDEKAFKNTYRQAMNDL 178 (240)
T ss_dssp SSHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 34455667778888875
No 23
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=70.29 E-value=5 Score=30.89 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCCchHHHHHHHHHHHhcC-C-chHHHHHHHHHHHH----HHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHH
Q 029487 68 TVPQKANQVYCRFLESLMS-P-EVDYTVAITVFWAI----EAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHS 141 (192)
Q Consensus 68 ~~~~p~t~~Y~~~l~~~a~-~-~~~~~~al~pc~~~----y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~ 141 (192)
.+|+|++..|++++..++. + ...+++.+...|-+ =+.|++.+.... +. ++.. -.+...++.++=....+.
T Consensus 100 ~~~~~a~~~yv~~i~~~~~~~~p~~~lg~~Yv~YeG~~~GGq~i~~~~~~~l--~l-~~~g-~~f~~~~~~~~~~~~~~~ 175 (215)
T 1wzd_A 100 ITASPAVIDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHY--GV-DPEA-LGFYHFEGIAKLKVYKDE 175 (215)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC-CGGG-CGGGCCTTCSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc--Cc-Cccc-ceeeecCCcCCHHHHHHH
Confidence 5789999999999987654 2 22222222222111 233333333221 11 1111 023334443345677788
Q ss_pred HHHHHHHH
Q 029487 142 LKKIANRL 149 (192)
Q Consensus 142 l~~~ld~~ 149 (192)
+++.+|++
T Consensus 176 fr~~Ld~~ 183 (215)
T 1wzd_A 176 YREKLNNL 183 (215)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 88888876
No 24
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=56.96 E-value=26 Score=22.77 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=37.4
Q ss_pred hhCChHHHHHHHHHHHHHHHHHhhcchh------------hhhccchhHHHHHHHHHHHHHHH
Q 029487 129 RWGNDGFGQYCHSLKKIANRLLEKASDD------------LIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 129 ~y~~~~f~~~v~~l~~~ld~~~~~~~~~------------~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
-|+++.+++...++..++++- +++.| +.+..+..++++.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (80)
T 2juw_A 6 KYSNTQVESLIAEILVVLEKH--KAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFAKALA 66 (80)
T ss_dssp SSCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 488899999999999999873 22322 24566677899999999998875
No 25
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=56.87 E-value=16 Score=27.94 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 029487 165 DVLKKAEVELIRVLEHEVEFWNMSRGT 191 (192)
Q Consensus 165 ~~~~~~~~~F~~~~~lE~~Fwd~a~~~ 191 (192)
++.++|.+++.+++-|...+|..+|..
T Consensus 165 ~~~~~~~~A~~K~~~l~val~~~~Y~~ 191 (195)
T 2veb_A 165 EEVEKMYQAWFKATTLQVALWSYPYVK 191 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 778899999999999999999999953
No 26
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=56.48 E-value=26 Score=22.87 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=37.4
Q ss_pred hhCChHHHHHHHHHHHHHHHHHhhcchh------------hhhccchhHHHHHHHHHHHHHHH
Q 029487 129 RWGNDGFGQYCHSLKKIANRLLEKASDD------------LIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 129 ~y~~~~f~~~v~~l~~~ld~~~~~~~~~------------~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
-|+++.+++...++..++++- +++.| +.+..+..++++.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGNmvTNlln~~V~~~qR~~iAe~Fa~AL~ 66 (83)
T 2jpq_A 6 KYTDEQVEKILAEVALVLEKH--AASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFAQALM 66 (83)
T ss_dssp CSCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 488899999999999999873 22322 24566677899999999998875
No 27
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=53.74 E-value=25 Score=22.82 Aligned_cols=49 Identities=8% Similarity=0.126 Sum_probs=37.8
Q ss_pred hhCChHHHHHHHHHHHHHHHHHhhcchh------------hhhccchhHHHHHHHHHHHHHHH
Q 029487 129 RWGNDGFGQYCHSLKKIANRLLEKASDD------------LIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 129 ~y~~~~f~~~v~~l~~~ld~~~~~~~~~------------~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
-|+++.+++...++..++++-- ++.| +.+..+..++++.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH~--Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (80)
T 2juz_A 6 KYSDAQLSAIVNDMIAVLEKHK--APVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNSLI 66 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHTTSSCSTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 4888999999999999999742 2222 24666777889999999998875
No 28
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=52.60 E-value=43 Score=21.46 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=36.9
Q ss_pred hhCChHHHHHHHHHHHHHHHHHhhcchhh------------hhccchhHHHHHHHHHHHHHHH
Q 029487 129 RWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 129 ~y~~~~f~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
-|+++.+++...++..++++- +++.|+ .+ .+..++++.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGN~vTnlln-~V~~~qR~~iAe~Fa~AL~ 65 (76)
T 2jr2_A 6 KYSNERVEKIIQDLLDVLVKE--EVTPDLALMCLGNAVTNIIA-QVPESKRVAVVDNFTKALK 65 (76)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 488899999999999999874 223322 35 6677899999999998875
No 29
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=49.23 E-value=27 Score=22.80 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=36.7
Q ss_pred hhCChHHHHHHHHHHHHHHHHHhhcchhh------------hhccchhHHHHHHHHHHHHHHH
Q 029487 129 RWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 129 ~y~~~~f~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
-|+++.+++...++..++++- +++.|+ .+..+..++++.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGNmvTNlln~~V~~~qR~~iAe~Fa~AL~ 66 (83)
T 2jrx_A 6 RYSDEQVEQLLAELLNVLEKH--KAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQ 66 (83)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 588899999999999999874 222222 3556666888999999998875
No 30
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A*
Probab=49.05 E-value=98 Score=24.52 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=43.1
Q ss_pred CCCCC-CCCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH-------HHHHHHHhcccCCCCCC-ChhHHHHHHhhC
Q 029487 62 GVELS-ETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIE-------AVYQESFAHCLEPDTNT-PPELQEVCQRWG 131 (192)
Q Consensus 62 gi~~~-~~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~y-------~~~~~~~~~~~~~~~~~-~~~y~~Wi~~y~ 131 (192)
|.+.. ..+|.|++..|+.++..++. +...++ --+|..| +.+++.+.... +..+ +.- -.+...++
T Consensus 98 G~~w~~~~~p~~a~~~yv~~i~~ia~~~P~~ll---gh~Yv~y~g~lsGGqii~k~l~k~l--gL~~~~~g-l~Fy~f~g 171 (267)
T 1j02_A 98 GPHWQEAIPYTPATQHYVKRLHEVGGTHPELLV---AHAYTRYLGDLSGGQVLKKIAQKAM--ALPSSGEG-LAFFTFPS 171 (267)
T ss_dssp CTTGGGTSCCCHHHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHTTHHHHHHHHHHHHH--TCCTTCTT-CGGGCCTT
T ss_pred CCCccccCCCChHHHHHHHHHHHHhccCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCc-ceeeccCC
Confidence 66543 46789999999999998765 333233 3334444 33333333221 1111 111 12333444
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 029487 132 NDGFGQYCHSLKKIANRL 149 (192)
Q Consensus 132 ~~~f~~~v~~l~~~ld~~ 149 (192)
.++=..+.+.+++.||++
T Consensus 172 ~~d~~~~k~~fr~~Ld~l 189 (267)
T 1j02_A 172 IDNPTKFKQLYRARMNTL 189 (267)
T ss_dssp CSCHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 334455667778888865
No 31
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=48.33 E-value=27 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.7
Q ss_pred HhhCChHHHHHHHHHHHHHHHHHh
Q 029487 128 QRWGNDGFGQYCHSLKKIANRLLE 151 (192)
Q Consensus 128 ~~y~~~~f~~~v~~l~~~ld~~~~ 151 (192)
....|++|..+++.--++++|+..
T Consensus 8 ~I~~S~~F~~F~~rsskviERAL~ 31 (38)
T 3l9k_W 8 MIILSENFQRFVVRAGRVIERALS 31 (38)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999998754
No 32
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A*
Probab=48.01 E-value=1e+02 Score=24.37 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred CCCCC-CCCCchHHHHHHHHHHHhcC-CchHHHHHHHHHHHH----HHHHHHHHhcccCCCCCC-ChhHHHHHHhhCChH
Q 029487 62 GVELS-ETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAI----EAVYQESFAHCLEPDTNT-PPELQEVCQRWGNDG 134 (192)
Q Consensus 62 gi~~~-~~~~~p~t~~Y~~~l~~~a~-~~~~~~~al~pc~~~----y~~~~~~~~~~~~~~~~~-~~~y~~Wi~~y~~~~ 134 (192)
|-+.. ..+|+|++..|+.++..++. +...+++-+...+.+ =+.|.+.+.... +.++ ... -.+...++..+
T Consensus 118 G~~w~~~~~p~~a~~~yv~~i~~ia~~~P~~llgh~Yv~y~g~lsGGqii~k~l~k~l--gL~~~~~g-~~Fy~f~g~~d 194 (264)
T 2q32_A 118 GENWEEQVQAPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRAL--KLPSTGEG-TQFYLFENVDN 194 (264)
T ss_dssp CTTGGGGCCCCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTTCTT-CGGGCCTTCSC
T ss_pred CCCccccCCCChHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc--CCCCCCcc-ceeeccCCCCC
Confidence 65543 36789999999999998765 332233322222211 133333333211 1111 111 12334444333
Q ss_pred HHHHHHHHHHHHHHH
Q 029487 135 FGQYCHSLKKIANRL 149 (192)
Q Consensus 135 f~~~v~~l~~~ld~~ 149 (192)
=..+.+.+++.+|++
T Consensus 195 ~~~~k~~fr~~Ld~l 209 (264)
T 2q32_A 195 AQQFKQLYRARMNAL 209 (264)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 345666788888875
No 33
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=43.58 E-value=83 Score=24.77 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=26.9
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHHHH-HHHHHhhc
Q 029487 119 TPPELQEVCQRWGNDGFGQYCHSLKKI-ANRLLEKA 153 (192)
Q Consensus 119 ~~~~y~~Wi~~y~~~~f~~~v~~l~~~-ld~~~~~~ 153 (192)
....|..|++.|+..+|...++.+.+- ...+....
T Consensus 181 ~~~~~~~~~~~yg~~~~~~vl~fL~~AL~~DL~S~~ 216 (246)
T 1xkp_A 181 IYAIWSDLQXRFPNGDIDSVILFLQXALSADLQSQQ 216 (246)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhcC
Confidence 346899999999999999999988654 44554433
No 34
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=42.64 E-value=58 Score=22.08 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH
Q 029487 131 GNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 180 (192)
Q Consensus 131 ~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 180 (192)
....|.+....|..+|+++-..-.+ ++.....|.+++.|
T Consensus 28 ~~~sFEeal~eLEeIV~~LE~gel~-----------LEesl~lyeeG~~L 66 (100)
T 1vp7_A 28 LPQDFETALAELESLVSAMENGTLP-----------LEQSLSAYRRGVEL 66 (100)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTCSC-----------HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHH
Confidence 3467999999999999998543322 34455555555544
No 35
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=39.44 E-value=30 Score=22.94 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhh-cchhhhhccchhHHHHHHHHHHHHHHH
Q 029487 127 CQRWGNDGFGQYCHSLKKIANRLLEK-ASDDLIMGKAGDDVLKKAEVELIRVLE 179 (192)
Q Consensus 127 i~~y~~~~f~~~v~~l~~~ld~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~ 179 (192)
|+.|+-.+|-++|+.+.+.- . .++ ++...+...|.+.+.
T Consensus 7 i~DYTE~EFl~fv~~i~~~~-----~~~~e---------~~~d~lv~hF~~ite 46 (87)
T 1unk_A 7 ISDYTEAEFVQLLKEIEKEN-----VAATD---------DVLDVLLEHFVKITE 46 (87)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-----HSSCC---------HHHHHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHhCC-----CCCCh---------hHHHHHHHHHHHhcC
Confidence 56788888877777766551 1 233 455778888888764
No 36
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ...
Probab=38.17 E-value=1.3e+02 Score=23.00 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=16.7
Q ss_pred CCCCchHHHHHHHHHHHhcC
Q 029487 67 ETVPQKANQVYCRFLESLMS 86 (192)
Q Consensus 67 ~~~~~p~t~~Y~~~l~~~a~ 86 (192)
..+|+|++..|+.++..++.
T Consensus 104 ~~~~~~a~~~yv~~i~~i~~ 123 (233)
T 1n45_A 104 VIPYTPAMQRYVKRLHEVGR 123 (233)
T ss_dssp TSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhc
Confidence 36789999999999998654
No 37
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=36.81 E-value=31 Score=22.35 Aligned_cols=61 Identities=15% Similarity=0.030 Sum_probs=38.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHhhhhcCCCCCChhhHHHH---HHHHhhHHHHHHHHHHHHHHhCCCCCC
Q 029487 3 FTLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVI---LGGMAGLHDEIAWFKKEASKWGVELSE 67 (192)
Q Consensus 3 ~YL~QD~~YL~~y~r~~a~~~aka~~~~~~~~~~~~~~---~~~~~~~~~E~~~~~~~~~~~gi~~~~ 67 (192)
.++..+..+++.|..+.+.+..+..- + ...++++ ...+++...++..|...+.+.|++.++
T Consensus 7 ~~~~~~P~~~~~~~~l~~~~~~~~~L--~--~~~reLi~l~vs~~ngc~~c~~~H~~~a~~~G~t~~e 70 (96)
T 3bey_A 7 RFLEELPEVAESFKNFREAVRSEGKL--T--EREKLLISVACSVAVRCDACTRRHAEEALEAGITEGE 70 (96)
T ss_dssp CTGGGCHHHHHHHHHHHHHHHTCSSS--C--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHhcCCCC--C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Confidence 34566777888888777666533321 1 2333332 233333345999999999999998754
No 38
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=34.03 E-value=54 Score=21.95 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHH
Q 029487 127 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 178 (192)
Q Consensus 127 i~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 178 (192)
|+.|+-.+|.++|+.+.+ +...++ ++...+.+.|.+.+
T Consensus 7 i~DyTe~Efi~lv~~I~~-----~~~~~E---------~e~d~ll~~fe~it 44 (94)
T 3u43_A 7 ISDYTEAEFLEFVKKICR-----AEGATE---------EDDNKLVREFERLT 44 (94)
T ss_dssp GGGSBHHHHHHHHHHHHH-----TCCSSH---------HHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHh-----cCCCCH---------HHHHHHHHHHHHhC
Confidence 456666666666665544 111233 55666777776665
No 39
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=27.07 E-value=47 Score=26.99 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=24.1
Q ss_pred CChhHHHHHHhhCChHHHHHHHHHHHHH
Q 029487 119 TPPELQEVCQRWGNDGFGQYCHSLKKIA 146 (192)
Q Consensus 119 ~~~~y~~Wi~~y~~~~f~~~v~~l~~~l 146 (192)
....|++||+.|+..++...++.+.+-+
T Consensus 134 ~~~ly~~w~~~yg~~~r~~v~~Fl~~aL 161 (294)
T 2vj4_A 134 TTDQYIEWLGNFGFNHRHTIVNFVEQSL 161 (294)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4578999999999999999999886654
No 40
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.36 E-value=1.4e+02 Score=21.03 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHh------hCChHHHHHHHHHHHHHHHHHh
Q 029487 97 VFWAIEAVYQESFAHCLEPDTNTPPELQEVCQR------WGNDGFGQYCHSLKKIANRLLE 151 (192)
Q Consensus 97 pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~------y~~~~f~~~v~~l~~~ld~~~~ 151 (192)
|++-.-.++...+.. ..+.|+.|... -+++++......|+..+..+-.
T Consensus 28 PF~~Vk~EVq~sl~~-------l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~ 81 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNT-------ARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEW 81 (130)
T ss_dssp CHHHHHHHHHHHHHH-------HHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-------HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 666666666655542 24577777632 2346776655555555555433
No 41
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=23.08 E-value=29 Score=17.47 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=4.4
Q ss_pred hHHHhhH
Q 029487 3 FTLGQDY 9 (192)
Q Consensus 3 ~YL~QD~ 9 (192)
-||+||+
T Consensus 5 t~LIqdy 11 (26)
T 2f3y_B 5 TFLIQEY 11 (26)
T ss_pred hhhHHHH
Confidence 3677775
No 42
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=22.94 E-value=1.5e+02 Score=20.07 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhccchhHHHHHHHHHHHHHHHH----HHHhhH
Q 029487 127 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH----EVEFWN 186 (192)
Q Consensus 127 i~~y~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l----E~~Fwd 186 (192)
|..|+-.+|.++|+.+.+.- . ...+ +.+..+.+.|.+.+.. -+-||.
T Consensus 14 isDYTE~EFi~lv~~I~~~~---~-~~e~---------e~~d~Ll~hF~~iteHP~GSDLIfYP 64 (101)
T 2k0d_X 14 ISDYTEAEFVQLLKEIEKEN---V-AATD---------DVLDVLLEHFVKITEHPDGTALIYEA 64 (101)
T ss_dssp GGGCBHHHHHHHHHHHHHHH---H-HTCS---------HHHHHHHHHHHHHHCCTTHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHhcC---C-Ccch---------HHHHHHHHHHHHcCCCCCCCceeeec
Confidence 67788888888887776652 1 1221 2357888999988753 344555
No 43
>2ouw_A Alkylhydroperoxidase AHPD core; YP_425393.1, carboxymuconolactone decarboxylase family, structural genomics, joint for structural genomics; 1.95A {Rhodospirillum rubrum} SCOP: a.152.1.4
Probab=21.55 E-value=1.1e+02 Score=20.98 Aligned_cols=61 Identities=7% Similarity=-0.033 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHHHHHHHh-hhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCC
Q 029487 6 GQDYIFVREFVAFAASVL-VKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE 67 (192)
Q Consensus 6 ~QD~~YL~~y~r~~a~~~-aka~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~ 67 (192)
..+...+..+...+..+. .+..-+.. .++-+....+.+++..-++..|...+++.|++.++
T Consensus 43 a~~P~~~~~~~~~~~~~~~~~~~L~~~-~~Eli~l~vs~~n~C~yC~~~H~~~a~~~G~s~ee 104 (138)
T 2ouw_A 43 ANDPALLKRTWEQVKTVMVGEGALDPL-TREMIYLAVSTANSCSYCAHSHTAAARAKGMTPAQ 104 (138)
T ss_dssp TTSHHHHHHHHHHHHHHHSSSSSSCHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Confidence 344555666555555555 33221100 02222333333333344899999999999988764
Done!