BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029488
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
Length = 196
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80
+R+RSAFKLL+++E I RV+D AAPG+WSQV +K+ A P S G
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNA-AGTDPSSPVG---F 57
Query: 81 IVAIDLQPMAPIEG-VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
++ +DL + P+EG D+T+ RT++ ++ G +AD+++ D AP+ TG D+D
Sbjct: 58 VLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDH 117
Query: 140 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
L L L+V +L+ GG F+ K + G + L
Sbjct: 118 DRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 154
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
G R+R+ FKL +I + +F+ VVDL AAPG WSQ Y+ ++ R
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQ------YVVTQIGGKGR----- 49
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
I+A DL PM PI GV +QGD + + ++ K +V+ D AP+++G +D
Sbjct: 50 -IIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI 108
Query: 140 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKTPV 189
L+ L + VL GG F+ K+F+G+ ++ + K V
Sbjct: 109 PRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV 158
>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
Putative, From Plasmodium Falciparum (Pf13_0052)
Length = 201
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 30/175 (17%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDL 78
+R+R+A+KL+++D ++ + K ++D+ PGSW QV L R K
Sbjct: 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK---------- 50
Query: 79 PLIVAIDLQPMAPIEGVIQVQGDITNARTAEV-VIRHFDGC----------------KAD 121
I+ ID + M PI V +QG+I + I + D K D
Sbjct: 51 --IIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKID 108
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
+++ D A G D +L L+ + + GG +I K++ G T+ L
Sbjct: 109 IILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNL 163
>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
Division From Thermoplasma Volcanicum Gss1
Length = 191
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLI 81
R+R+AFKL + + + + V+++ ++PG W+QVL+ L K I
Sbjct: 6 RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNS---LARK------------I 50
Query: 82 VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF--DGC-KADLVVCDGAPDVTGLHDMD 138
++IDLQ I GV ++ DI + + R +G K D VV D V+G+ D
Sbjct: 51 ISIDLQEXEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAXAKVSGIPSRD 110
Query: 139 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174
V Q+ + L+ GG + K F+G T+
Sbjct: 111 HAVSYQIGQRVXEIAVRYLRNGGNVLLKQFQGDXTN 146
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 14 RKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDS 73
K +G + S + +I E +N FEG+ +VD+ G+ + ++ K S ++
Sbjct: 176 NKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY-----PSINA 230
Query: 74 REGDLPLIVAIDLQPMAPIEGVIQVQGDI 102
DLP ++ Q GV + GD+
Sbjct: 231 INFDLPHVI----QDAPAFSGVEHLGGDM 255
>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
Length = 243
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 7 DKRDIYYRKAKEEGWRA-------RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVL 59
+K+D+ + + +E W+A R+ F +I E +I EG+K VVD A G + ++
Sbjct: 49 EKKDLPF-EMDDEKWQATLDADVNRAWFYHSEISHELDISEGLKSVVDHIKANGPYDGIV 107
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 118 CKADLVVCDGAPDVTGLHDMD-EFVQSQLILAG 149
C +DL+VCDG D HD D + + ++ AG
Sbjct: 67 CISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,611,489
Number of Sequences: 62578
Number of extensions: 218454
Number of successful extensions: 464
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 12
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)