BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029488
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 255 bits (652), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/186 (65%), Positives = 145/186 (77%), Gaps = 9/186 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY---------EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
D+V+CDGAPDVTG+H +DEF+Q++LILA + +HVLKEGG F+AKIFR +++SLLY Q+
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQM 171
Query: 181 NKMLVK 186
K K
Sbjct: 172 KKYFKK 177
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 253 bits (645), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 147/180 (81%), Gaps = 7/180 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
DL++ DGAPDVTGLHD+D + QSQLIL+ L + TH LK GG F+AK+F+G D SL+Y Q+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQM 173
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/181 (64%), Positives = 144/181 (79%), Gaps = 10/181 (5%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
DLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY Q+
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQL 170
Query: 181 N 181
Sbjct: 171 Q 171
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 244 bits (622), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/186 (62%), Positives = 145/186 (77%), Gaps = 2/186 (1%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+L S + E P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF A
Sbjct: 61 RELLKNIDTSIAADEK--PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPA 118
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
DLVV DGAPDVTGLHD+DE++Q+Q++LA + VLK GGKF+AKIFRG+D SLLY Q+
Sbjct: 119 DLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQL 178
Query: 181 NKMLVK 186
M K
Sbjct: 179 RLMFRK 184
>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1
OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1
Length = 302
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/191 (60%), Positives = 142/191 (74%), Gaps = 4/191 (2%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-K 119
RKLY + E I+A+DLQ MAPI G++Q+QGDIT TAE +I HF G K
Sbjct: 61 RKLYDTCET---DDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEK 117
Query: 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179
A LVVCDGAPDVTG+H+MDE++Q QL++A L++ T VL+ GG F+AKIF+G TSLL Q
Sbjct: 118 AQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQ 177
Query: 180 VNKMLVKTPVY 190
+ K +Y
Sbjct: 178 MQIFFKKFDIY 188
>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1
Length = 320
Score = 223 bits (569), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 139/190 (73%), Gaps = 4/190 (2%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + EG+ R VDLCAAPGSWSQVL+
Sbjct: 1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLA 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY P L P+ RE I+A+DLQ MAPIEGV Q++ DI+ TAE +I F G KA
Sbjct: 61 KRLYEP--LPPEEREK--VKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKA 116
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
+VV DGAPD TG+HD D +VQ +L+L+ L++ T +L+EGG F++KI+R TS LY Q+
Sbjct: 117 QIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQL 176
Query: 181 NKMLVKTPVY 190
+ V+
Sbjct: 177 KRFFKNVCVF 186
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 142/188 (75%), Gaps = 6/188 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE--GVKRVVDLCAAPGSWSQV 58
MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+ + +KRVVDLCAAPGSWSQV
Sbjct: 1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
LSRKL+ SP S + D IV++DLQPM+PI V +Q DIT+ +T +++ F
Sbjct: 61 LSRKLF---DESPSSDKEDRK-IVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178
KAD V DGAPDVTGLHD+DE+VQ QLI++ L + +LK+GG F+AKIFRG+D +LY
Sbjct: 117 KADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYS 176
Query: 179 QVNKMLVK 186
Q+ + K
Sbjct: 177 QLGYLFDK 184
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 15/166 (9%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD++D YYRKAKEEG+RARSA+KL QI+++F+I RVVDL AAPG W QV
Sbjct: 2 ARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+RE ++V +DL+ + P+EG++ +QGDIT T E + G +AD+V+
Sbjct: 56 --------ARELSGGIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAAL-GGQADVVI 106
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
D AP+++G+ D+D L A L + +L+ GG F+ K+F+G
Sbjct: 107 SDAAPNLSGIWDVDHARSIDLSRAALRIAKRLLRPGGSFLVKVFQG 152
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 12/167 (7%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +PA+
Sbjct: 13 DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPAQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
LIV +DL P+ PI VI Q DIT + + H KAD V+ DGAP
Sbjct: 70 ---------SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
+V D F Q++L+L L + T L EGG F+ K+FR KD + L
Sbjct: 121 NVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPL 167
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 12/177 (6%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV A++
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVA-------AEV 65
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
P S LIV +DL P+ PI VI Q DIT + + +H KAD V+ DGAP
Sbjct: 66 MPVS-----SLIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVK 186
+V D F Q++L L + + T L EGG F+ K+FR KD + + N++ K
Sbjct: 121 NVGTAWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKK 177
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K +DLCAAPGSW QV + + +
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMPTNS-- 70
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
+I+ +DL P+ PI VI Q DIT + + H KAD+V+ DGAP
Sbjct: 71 ----------IIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADVVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVK 186
+V D + Q++L L L + T L EGG F+ K+FR KD + L N++ K
Sbjct: 121 NVGTAWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAK 177
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 12/167 (7%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +P +
Sbjct: 13 DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPTQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
+I+ +DL P+ PI VI Q DIT + + +H KAD V+ DGAP
Sbjct: 70 ---------SIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
+V D F Q++L+L + + T L EGG F+ K+FR KD + L
Sbjct: 121 NVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPL 167
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K + + D YYR AKE+G+RARS+FK++QI++++ F E K V+DLCAAPGSW QV S+
Sbjct: 7 KHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ D+ P+ P+ VI Q DIT + + ++ KAD
Sbjct: 67 -------LCPVN-----SLIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QS+L+L L + L +GG F+ K+FR KD + L
Sbjct: 115 TVMHDGAPNVGMAWAQDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNL 169
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRD 163
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRD 163
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 100/175 (57%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S+
Sbjct: 7 KHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ P+ P+ VI Q DIT + H KAD
Sbjct: 67 -------LCPIN-----SLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QSQL L L + L GG F+ KIFR +D + L
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNL 169
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 13/177 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W QV +
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P LI+ +DL + P+ V DIT + + +H KADL
Sbjct: 66 -YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADL 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD-TSLLYC 178
V+ DGAP+V D F Q++L+L L + T L +GG F+ K+FR +D SLL+
Sbjct: 115 VLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWV 171
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 13/177 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W QV +
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P LI+ +DL + P+ V DIT + + +H KADL
Sbjct: 66 -YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADL 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD-TSLLYC 178
V+ DGAP+V D F Q++L+L L + T L +GG F+ K+FR +D SLL+
Sbjct: 115 VLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWV 171
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRD 163
>sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus GN=Ftsj3 PE=1
SV=1
Length = 838
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172
+V+ DGAP+V D + Q+ L L L + L GG FI K+FR +D
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRD 163
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 15/175 (8%)
Query: 1 MGKASR---DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57
MGK S+ +RD +Y AKE G+R+RSAFKLLQ++ +F + + ++DLCAAPG W Q
Sbjct: 1 MGKKSKVGKSRRDKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQ 60
Query: 58 VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG 117
V S+ ++P L++ +DL P+ PI V+ +Q DIT + + + +
Sbjct: 61 VASK--FMPVS----------SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQT 108
Query: 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172
K D+V+ DGAP+V D + Q+ L L L + L +GG FI K+FR +D
Sbjct: 109 WKVDVVLNDGAPNVGASWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRD 163
>sp|Q4FMX1|RLME_PELUB Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter
ubique (strain HTCC1062) GN=rlmE PE=3 SV=1
Length = 203
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 109/186 (58%), Gaps = 14/186 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
++ KRDIY R+++ +G+RARSA+KL++IDE+F IF+ V+DL A+PGSWSQ +SR +
Sbjct: 12 NKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTV- 70
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+ G L V+IDL+ M IE IQ++GD T+ + E + F K D+VV
Sbjct: 71 ---------KSGRL---VSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFK-SKVDVVV 117
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKML 184
D A + TG+ D+D +L + + +L + G+F++KIF G + + K+
Sbjct: 118 SDMAVNTTGIKDIDAIYTGELAMEAMNFSKEMLVKEGRFVSKIFLGSSFNEIVALGKKLF 177
Query: 185 VKTPVY 190
+ V+
Sbjct: 178 KEVKVF 183
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 14/166 (8%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAK---- 57
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+LS ++ +DLQ +APIEGV +QGDI T + +IR AD+V+
Sbjct: 58 ---QLSGGK-------VLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVL 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
CD AP+++G D +L + L +LK G F+ K+F+G
Sbjct: 108 CDAAPNLSGNWSYDHARSIELTTSALECAKKILKPKGNFVVKVFQG 153
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 98/175 (56%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
KL P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------KLCPVN-----SLIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QS L L L + L G F+ KIFR KD + L
Sbjct: 115 TVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKL 169
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 99/175 (56%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
KL P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------KLCPVN-----SLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QSQL L L + L G F+ KIFR KD + L
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKL 169
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 98/175 (56%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASN 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 67 -------LCPVN-----SLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QS L L L + L GG F+ KIFR KD + L
Sbjct: 115 TVLHDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKL 169
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YYR+AKEEG+R+R++FKL QI+E +I VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
++E ++ +DLQ + PIEGV +QG+I T + +I+ AD+V+
Sbjct: 56 --------AKELSGGKVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVL 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKML 184
CD AP+++G D +L + L +LK G F+ K+F+G + +V
Sbjct: 108 CDAAPNLSGNWSYDHARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNF 167
Query: 185 VKTPVY 190
V+T Y
Sbjct: 168 VRTMAY 173
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y AKE+G+R+R+AFKL+Q++++FN E + +DLCAAPG W QV S+
Sbjct: 8 KTAKGRLDKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASK- 66
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
++PA LIV +DL P+ PI I DI + + + + + KAD+
Sbjct: 67 -FMPAN----------SLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQILKDWKADI 115
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182
V+ DGAP+V D + QS+L L L + L GG F+ K+FR KD + L N+
Sbjct: 116 VIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNNLLWVFNQ 175
Query: 183 MLVK 186
+ K
Sbjct: 176 LFKK 179
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 97/175 (55%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 8 KNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASN 67
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ PM + VI Q DIT + + KAD
Sbjct: 68 -------LCPVN-----SLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKAD 115
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QS L L L + L GG F+ KIFR KD + L
Sbjct: 116 TVLHDGAPNVGLSWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKL 170
>sp|C5CKU4|RLME_VARPS Ribosomal RNA large subunit methyltransferase E OS=Variovorax
paradoxus (strain S110) GN=rlmE PE=3 SV=1
Length = 222
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y + A EG+RAR+A+KL +IDE + + + VVDL + PG+WSQ L R++
Sbjct: 21 DPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRRM------ 74
Query: 70 SPD-SREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
SP+ + G+L I+A+D+ PM PIEGV +QGD A E V+ G KADLVV D
Sbjct: 75 SPEGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQVLGVLAGRKADLVVSDM 134
Query: 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
AP+++G+H D + LI + H LK G +AK+F G
Sbjct: 135 APNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHG 177
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 97/175 (55%), Gaps = 13/175 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S+
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ P+ + I Q DIT + H KAD
Sbjct: 67 -------LCPIN-----SLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
V+ DGAP+V D F QS L L L + L GG F+ KIFR +D + L
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNL 169
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+LS ++ +DLQ + PIEGV +QGDI T + +I+ AD+V+
Sbjct: 56 -AKQLSGGK-------VLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVGEKGADVVL 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKML 184
CD AP+++G D +L + L +LK G F K+F+G + +V
Sbjct: 108 CDAAPNLSGNWSYDHARSIELATSALECAKKILKPKGNFAVKVFQGDMFNDYLDEVRNNF 167
Query: 185 VKTPVY 190
V+ Y
Sbjct: 168 VRVKAY 173
>sp|Q2GB53|RLME_NOVAD Ribosomal RNA large subunit methyltransferase E OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=rlmE PE=3 SV=1
Length = 222
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 92/173 (53%), Gaps = 15/173 (8%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
SR D Y +KAK EGWR+R+AFKL+++DE+F + +G KRVVDL APG WSQV+ +K
Sbjct: 27 SRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPGGWSQVVRKK-- 84
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+P ++ IV IDL P PIEGV + D E + DG DLV+
Sbjct: 85 -----APAAK------IVGIDLLPTEPIEGVTIFEMDFMADEAPEALQSALDGP-PDLVL 132
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLL 176
D A + G D L+ + L GG F+AK+F G DT LL
Sbjct: 133 SDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTELL 185
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 12/184 (6%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y AKE+G+R+R+AFKL+Q+++++N K +DLCAAPG W QV S+
Sbjct: 7 KLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P + LIV +DL P+ + I + DIT + + + K D+
Sbjct: 66 -YMPVQ----------SLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDV 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182
+ DGAP++ D + Q++L L L + T L GG F+ K+FRG D + L NK
Sbjct: 115 CLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNK 174
Query: 183 MLVK 186
+ K
Sbjct: 175 LFKK 178
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 13/176 (7%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y+ AKE+G+R+R+AFKL+Q++++++ E K ++DLCAAPG W QV S+
Sbjct: 7 KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
P S LIV +DL P+ PI DIT+ + + + KAD+
Sbjct: 66 -----TCKPGS------LIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADV 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD-TSLLY 177
V+ DGAP+V D + Q+QL+L + + L GG F+ K+FR +D +LL+
Sbjct: 115 VLHDGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLW 170
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 22/170 (12%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
KRD YY+ AK+ +R+R++FKL+Q++E+FN+ + K V+DL APG W QV
Sbjct: 13 KRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQV--------- 63
Query: 68 KLSPDSRE--GDLPLIVAIDLQPMAPIE--GVIQVQGDIT---NARTAEVVIRHFDGCKA 120
+RE GD ++ IDLQP+ P E V+ ++GD T N +I + D K
Sbjct: 64 -----AREIVGDKGFVIGIDLQPVKPFEYDNVVAIKGDFTLEENLNKIRELIPN-DEKKV 117
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
D+V+ D +P+++G D+D L+ L + T +LKE G F+AK+F G
Sbjct: 118 DVVISDASPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYG 167
>sp|Q2NHD6|RLME_METST Ribosomal RNA large subunit methyltransferase E OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=rlmE PE=3 SV=1
Length = 206
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 104/171 (60%), Gaps = 14/171 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
KA DK + YY+ AK++ +R+R+++KL Q+D+++++ + VVDL AAPG WSQV++
Sbjct: 5 KAKHDK-EHYYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAET 63
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKA 120
+ EG I+++DL+ + PI E V+GD T T +++I DG KA
Sbjct: 64 I---------GEEGK-GQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDG-KA 112
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171
D+V+ D AP +TG+ D+D F L +A + ++ ++LK G I K F+G+
Sbjct: 113 DVVLSDAAPKLTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGE 163
>sp|Q73IS9|RLME_WOLPM Ribosomal RNA large subunit methyltransferase E OS=Wolbachia
pipientis wMel GN=rlmE PE=3 SV=1
Length = 192
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 18/183 (9%)
Query: 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAK 68
D Y +K ++G+R+RSA+KL+++D +F +F+ ++++DL A+PG WSQV S+K
Sbjct: 2 NDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQK------ 55
Query: 69 LSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128
+VA+D++PM I GV +Q DI N E++ F K D+++ D A
Sbjct: 56 ---------GANVVALDIKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMA 104
Query: 129 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKTP 188
P+ GL +D L A L H L GG F+ KIF+G ++ +C K + KT
Sbjct: 105 PESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQG-ESDKDFCNELKKMFKTV 163
Query: 189 VYF 191
YF
Sbjct: 164 KYF 166
>sp|Q12WR3|RLME_METBU Ribosomal RNA large subunit methyltransferase E OS=Methanococcoides
burtonii (strain DSM 6242) GN=rlmE PE=3 SV=1
Length = 267
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 14/166 (8%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AK+EG+R+R+A+KL QI+E+ + + +VDL AAPG W L
Sbjct: 2 ARDRRDTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGW-------LE 54
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+ K+S IV +DL+ + IEGV ++GDIT+ T + +I AD+V+
Sbjct: 55 VAKKISGGK-------IVGVDLRRIKEIEGVETIKGDITSDETIKKIIELVGEGGADVVI 107
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
CD AP+++G +D L + L +LK G FI K+F+G
Sbjct: 108 CDAAPNLSGNWSLDHARSIDLTTSALECAKKILKPKGHFIVKVFQG 153
>sp|O28228|RLME_ARCFU Ribosomal RNA large subunit methyltransferase E OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rlmE PE=3 SV=1
Length = 191
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 17/175 (9%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
+D++D YY KAK+EG+R+R+A+KLLQ++ F + V+DL A PG WSQV + L
Sbjct: 2 KDRQDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAA---LL 58
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
A+ +VA+D+ PM P+E V ++GDIT T E IR D+V+
Sbjct: 59 GAR------------VVAVDINPMKPLENVTFIRGDITLPETLE-KIREI-SPDYDVVMS 104
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
D +P ++G +D L A ++ VLK GG F+ K+F+G++ + ++
Sbjct: 105 DASPKISGKWTIDHLRSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNEL 159
>sp|A6UUK5|RLME_META3 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rlmE PE=3
SV=1
Length = 269
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 102/181 (56%), Gaps = 19/181 (10%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
K D YY+ AK+ +R+R+++KLLQ++E+F I VVDL APG W Q S L
Sbjct: 13 KNDFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQA-SYDLV--- 68
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
G+ ++ +DLQ + P+ E ++ +QGD+T T +I KAD+V+C
Sbjct: 69 --------GEDGFVIGVDLQKVKPLREENIVAIQGDMTKKETINKII-DLMPSKADVVIC 119
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185
D +P+++G+ ++D +L L L TH+L++ G F+ K+F+G L+ Q ++L
Sbjct: 120 DASPNISGVWEVDHSRSIELSLMALIATTHLLRKNGNFVVKVFQGS----LFDQYVQLLT 175
Query: 186 K 186
K
Sbjct: 176 K 176
>sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rlmE PE=3 SV=1
Length = 259
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLP 66
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W QV +
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAA------ 56
Query: 67 AKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGCKADLV 123
R G +V +D Q + E G+ V+GD+T T + V +G AD+V
Sbjct: 57 ------ERAGARGKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVV 109
Query: 124 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
V D APD+TG +D+D L L +L GG F+ K+F G+D L +
Sbjct: 110 VSDMAPDMTGEYDLDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADI 166
>sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE
PE=3 SV=1
Length = 259
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLP 66
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W QV +
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAA------ 56
Query: 67 AKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGCKADLV 123
R G +V +D Q + E G+ V+GD+T T + V +G AD+V
Sbjct: 57 ------ERAGARGKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVV 109
Query: 124 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180
V D APD+TG +D+D L L +L GG F+ K+F G+D L +
Sbjct: 110 VSDMAPDMTGEYDLDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADI 166
>sp|A6USA0|RLME_METVS Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rlmE
PE=3 SV=1
Length = 259
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 15/165 (9%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
K+D YY AK + +R+R+ +KL Q++E+FNI + VVDL APG W Q +R +
Sbjct: 13 KKDPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQA-ARDM---- 67
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
G+ IV IDLQ + P+ E VI V+GD+T+ T + I+ K D+++C
Sbjct: 68 -------TGEEGFIVGIDLQQIKPLPYENVIAVKGDMTDEETLK-KIQDILPEKPDVIIC 119
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
D +P+++G+ D+D +L L T +LK+GG F+ K+F+G
Sbjct: 120 DASPNISGVWDVDHTRSLELTTMALMTATKMLKKGGNFVVKVFQG 164
>sp|O27801|RLME_METTH Ribosomal RNA large subunit methyltransferase E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rlmE PE=3 SV=1
Length = 211
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 17/186 (9%)
Query: 1 MGK--ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQV 58
MGK + KRD YYR AK+E +R+R+++KLLQ++ ++ + + RV+DL AAPG WSQV
Sbjct: 1 MGKRWQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFD 116
K+ G+ L+VA+DLQ + P E ++GD T+ + +IR
Sbjct: 61 ALDKV------------GEEGLVVAVDLQRIKGFPAENFRAIRGDFTDPEVKDKIIREL- 107
Query: 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176
G +AD+V+ D AP ++G+ D+D L+ L + VL G + K F+G + +
Sbjct: 108 GGRADVVISDAAPSLSGIRDIDHLRSVDLVENVLDIAYRVLDRKGNILIKAFQGPELDRV 167
Query: 177 YCQVNK 182
++ K
Sbjct: 168 IKELRK 173
>sp|B9LSX2|RLME_HALLT Ribosomal RNA large subunit methyltransferase E OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 /
ACAM 34) GN=rlmE PE=3 SV=1
Length = 269
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAK 68
+D YY K+K++G+RARSA+KL QIDEE N+FE VVDL AAPG W QV + ++
Sbjct: 4 KDEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEEV----- 58
Query: 69 LSPDSREGDLPLIVAIDLQPMAPIE--GVIQVQGDITNARTAEVVIRHFDGCKADLVVCD 126
G+ +V +DLQ + ++ V ++GD+T RT + AD+V+ D
Sbjct: 59 -------GESGTVVGVDLQRIDDLDDHDVETIRGDMTEERTRHYLREAIGERGADVVISD 111
Query: 127 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172
AP++TG + +D L V +L GG F+ K+F+G+D
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVAEELLAPGGDFVVKVFQGED 157
>sp|Q2YBT1|RLME_NITMU Ribosomal RNA large subunit methyltransferase E OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=rlmE
PE=3 SV=1
Length = 206
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 12/161 (7%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D + R+AK+EG+R+R+A+KL++I E ++F+ VVDL AAPG WSQV + KL +
Sbjct: 17 DFFVRQAKKEGYRSRAAYKLMEIAERDHLFKPGMTVVDLGAAPGGWSQVAAEKLKGKGR- 75
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
VA+D+ MAPI GV +QGD A + DLV+CD +P
Sbjct: 76 -----------AVALDILEMAPISGVTFIQGDFREASVLAELKEQLKDLPVDLVICDMSP 124
Query: 130 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
++TG+ +D+ L L T L GG F+ K+F+G
Sbjct: 125 NITGIRVIDQTRGMHLAELALEFCTEQLNSGGNFLVKVFQG 165
>sp|Q5NQH8|RLME_ZYMMO Ribosomal RNA large subunit methyltransferase E OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rlmE PE=3 SV=1
Length = 221
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y +KA+ EG+R+R+AFKL+++DE F++ + +R++DL APG WSQV +K
Sbjct: 25 RQLNDPYVQKAQAEGYRSRAAFKLIELDERFSLLKNARRIIDLGIAPGGWSQVARKK--- 81
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+P ++ IV IDL APIEGV Q D T+ + +I G ADLV+
Sbjct: 82 ----APQAK------IVGIDLLEAAPIEGVTIFQNDFTDPEAQKKLIEALGGA-ADLVLS 130
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170
D A + G D L+ + L+EGG F+AK+ G
Sbjct: 131 DMAANTIGHAQTDHLRTMALVEEAAVFASETLREGGSFVAKVLAG 175
>sp|Q5GS59|RLME_WOLTR Ribosomal RNA large subunit methyltransferase E OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=rlmE PE=3 SV=1
Length = 216
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 19/186 (10%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y +K ++ +R+RSA+KL++ID +F + + +++VDL A+PG WSQV S+K
Sbjct: 24 RHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGASPGGWSQVASQKGV- 82
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+VAID++P+ I GV +Q DI E + F K D+++
Sbjct: 83 --------------KVVAIDIKPVNTISGVKYIQYDINE---LETLRERFKDQKFDVILS 125
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185
D AP+ GL +D L A L H L GGKF+ KIF+G+ Y ++ KM
Sbjct: 126 DMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQGESDKDFYNELKKMF- 184
Query: 186 KTPVYF 191
K YF
Sbjct: 185 KIVKYF 190
>sp|A8GMD3|RLME_RICAH Ribosomal RNA large subunit methyltransferase E OS=Rickettsia akari
(strain Hartford) GN=rlmE PE=3 SV=1
Length = 227
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y KA+ EG+R+R+A+KLL+I E+F +F ++VDL AAPG WSQV S+ +
Sbjct: 31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLI-- 88
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
K S +S I++IDL + PI GV +Q D T E++I+ DG KAD+V+
Sbjct: 89 --KASDNSLNNK---IISIDLLEIEPIIGVEFLQKDFFEENTEELIIQVLDG-KADIVMS 142
Query: 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185
D A + TG D L VLK G FIAKIFRG + L +V K
Sbjct: 143 DMASNTTGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKV-KCEF 201
Query: 186 KTPVYF 191
KT +F
Sbjct: 202 KTVKHF 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,101,247
Number of Sequences: 539616
Number of extensions: 2784556
Number of successful extensions: 7697
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6684
Number of HSP's gapped (non-prelim): 492
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)