Query 029488
Match_columns 192
No_of_seqs 109 out of 1105
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1099 SAM-dependent methyltr 100.0 8.4E-43 1.8E-47 277.0 14.0 186 1-190 1-186 (294)
2 COG0293 FtsJ 23S rRNA methylas 100.0 1.6E-39 3.5E-44 257.4 19.1 174 5-190 9-182 (205)
3 KOG4589 Cell division protein 100.0 2.5E-38 5.4E-43 244.7 15.7 173 6-190 34-207 (232)
4 PRK11188 rrmJ 23S rRNA methylt 100.0 6.7E-33 1.4E-37 222.7 19.9 173 6-190 16-188 (209)
5 KOG1098 Putative SAM-dependent 100.0 9.1E-32 2E-36 237.6 11.3 177 1-189 1-180 (780)
6 PF01728 FtsJ: FtsJ-like methy 100.0 9.4E-32 2E-36 210.9 10.2 158 21-190 1-162 (181)
7 TIGR00438 rrmJ cell division p 99.9 6.6E-26 1.4E-30 178.9 20.5 169 10-190 1-169 (188)
8 KOG3673 FtsJ-like RNA methyltr 99.9 1.2E-23 2.6E-28 184.0 6.3 182 4-190 214-425 (845)
9 PF01209 Ubie_methyltran: ubiE 99.6 7.5E-16 1.6E-20 125.7 8.5 115 40-185 46-171 (233)
10 COG2226 UbiE Methylase involve 99.6 2.9E-15 6.3E-20 122.1 10.6 104 40-175 50-164 (238)
11 PF05175 MTS: Methyltransferas 99.6 1.4E-14 3.1E-19 112.6 11.3 119 41-190 31-160 (170)
12 COG4123 Predicted O-methyltran 99.6 4.2E-14 9E-19 115.7 11.4 126 40-185 43-188 (248)
13 PRK14902 16S rRNA methyltransf 99.5 6.7E-14 1.5E-18 124.0 11.3 131 40-189 249-406 (444)
14 PF12847 Methyltransf_18: Meth 99.5 9.9E-14 2.2E-18 99.6 10.1 97 41-167 1-111 (112)
15 PTZ00146 fibrillarin; Provisio 99.5 4.3E-13 9.2E-18 112.3 14.6 122 39-190 130-270 (293)
16 TIGR00446 nop2p NOL1/NOP2/sun 99.5 6.6E-13 1.4E-17 110.2 13.6 123 40-182 70-217 (264)
17 PRK14903 16S rRNA methyltransf 99.5 5.5E-13 1.2E-17 117.8 13.6 124 40-182 236-384 (431)
18 PRK14901 16S rRNA methyltransf 99.5 3.5E-13 7.7E-18 119.1 11.9 128 40-183 251-403 (434)
19 COG2230 Cfa Cyclopropane fatty 99.5 2.5E-13 5.4E-18 113.0 9.8 104 31-169 63-178 (283)
20 TIGR02752 MenG_heptapren 2-hep 99.5 6.9E-13 1.5E-17 107.3 12.1 103 39-172 43-156 (231)
21 PRK10901 16S rRNA methyltransf 99.5 8.4E-13 1.8E-17 116.5 12.5 124 40-182 243-390 (427)
22 PRK15001 SAM-dependent 23S rib 99.5 6.3E-13 1.4E-17 115.3 11.5 118 42-190 229-360 (378)
23 PRK11933 yebU rRNA (cytosine-C 99.5 8.9E-13 1.9E-17 117.3 12.6 125 40-183 112-261 (470)
24 PLN02233 ubiquinone biosynthes 99.4 1.3E-12 2.9E-17 108.3 12.5 103 39-172 71-187 (261)
25 PRK14904 16S rRNA methyltransf 99.4 1.8E-12 3.8E-17 115.0 13.9 123 40-183 249-396 (445)
26 TIGR00563 rsmB ribosomal RNA s 99.4 1.7E-12 3.7E-17 114.5 13.2 124 40-182 237-386 (426)
27 COG4106 Tam Trans-aconitate me 99.4 4.5E-13 9.7E-18 106.8 7.0 114 21-171 14-133 (257)
28 PRK04266 fibrillarin; Provisio 99.4 4.9E-12 1.1E-16 102.9 13.1 121 39-190 70-209 (226)
29 PF02353 CMAS: Mycolic acid cy 99.4 1.2E-12 2.7E-17 109.1 9.1 106 29-169 51-168 (273)
30 PF13847 Methyltransf_31: Meth 99.4 1E-12 2.2E-17 100.0 7.6 100 40-169 2-112 (152)
31 PRK11760 putative 23S rRNA C24 99.4 6E-12 1.3E-16 107.0 12.5 87 19-128 182-279 (357)
32 PRK14103 trans-aconitate 2-met 99.4 1.7E-12 3.7E-17 106.9 8.6 97 40-169 28-128 (255)
33 TIGR00138 gidB 16S rRNA methyl 99.4 4.5E-12 9.8E-17 99.7 10.6 104 41-182 42-156 (181)
34 KOG1540 Ubiquinone biosynthesi 99.4 6.1E-12 1.3E-16 102.5 11.5 120 41-186 100-233 (296)
35 PRK09489 rsmC 16S ribosomal RN 99.4 9E-12 2E-16 107.0 12.9 117 42-190 197-323 (342)
36 KOG3674 FtsJ-like RNA methyltr 99.4 1.3E-12 2.8E-17 114.1 7.6 168 18-190 106-299 (696)
37 PRK01683 trans-aconitate 2-met 99.4 4.2E-12 9.2E-17 104.5 10.2 95 40-167 30-130 (258)
38 COG2813 RsmC 16S RNA G1207 met 99.4 2E-11 4.4E-16 102.0 13.6 117 42-190 159-286 (300)
39 TIGR03534 RF_mod_PrmC protein- 99.4 1.6E-11 3.4E-16 100.2 12.7 127 41-190 87-240 (251)
40 PLN02244 tocopherol O-methyltr 99.4 1.3E-11 2.8E-16 106.0 12.8 96 40-168 117-224 (340)
41 PRK00121 trmB tRNA (guanine-N( 99.3 4.6E-12 1E-16 101.2 9.1 121 40-182 39-171 (202)
42 PF13659 Methyltransf_26: Meth 99.3 4.8E-12 1E-16 91.6 8.3 103 42-167 1-115 (117)
43 PRK08287 cobalt-precorrin-6Y C 99.3 2E-11 4.4E-16 96.0 12.4 113 40-189 30-154 (187)
44 PRK10258 biotin biosynthesis p 99.3 1.3E-11 2.7E-16 101.3 10.9 105 41-179 42-152 (251)
45 COG0144 Sun tRNA and rRNA cyto 99.3 3.2E-11 6.9E-16 104.1 13.5 127 40-183 155-307 (355)
46 PRK00107 gidB 16S rRNA methylt 99.3 2.4E-11 5.2E-16 96.1 11.5 94 39-169 43-147 (187)
47 PTZ00098 phosphoethanolamine N 99.3 1.5E-11 3.3E-16 102.0 10.8 99 39-168 50-157 (263)
48 TIGR00091 tRNA (guanine-N(7)-) 99.3 6.8E-12 1.5E-16 99.5 8.1 123 40-183 15-148 (194)
49 TIGR00537 hemK_rel_arch HemK-r 99.3 5.7E-11 1.2E-15 92.8 13.2 119 40-183 18-156 (179)
50 TIGR02469 CbiT precorrin-6Y C5 99.3 3.9E-11 8.5E-16 87.1 11.2 94 40-167 18-122 (124)
51 PRK11873 arsM arsenite S-adeno 99.3 1.7E-11 3.7E-16 101.7 10.5 97 39-166 75-182 (272)
52 PF08241 Methyltransf_11: Meth 99.3 5.9E-12 1.3E-16 86.9 6.4 87 46-165 1-95 (95)
53 COG1189 Predicted rRNA methyla 99.3 4.9E-11 1.1E-15 96.5 12.3 117 17-167 55-178 (245)
54 TIGR02072 BioC biotin biosynth 99.3 5.6E-11 1.2E-15 95.6 12.5 116 24-172 18-140 (240)
55 PRK00377 cbiT cobalt-precorrin 99.3 4.8E-11 1E-15 94.9 11.6 112 39-183 38-161 (198)
56 PRK09328 N5-glutamine S-adenos 99.3 8.5E-11 1.8E-15 97.3 12.9 127 40-189 107-260 (275)
57 PRK11207 tellurite resistance 99.3 2.8E-11 6E-16 96.3 9.3 93 40-165 29-132 (197)
58 TIGR03704 PrmC_rel_meth putati 99.3 5.8E-11 1.3E-15 98.0 10.8 121 42-182 87-230 (251)
59 PRK14967 putative methyltransf 99.3 1.2E-10 2.7E-15 94.1 12.5 130 29-182 25-174 (223)
60 PRK15068 tRNA mo(5)U34 methylt 99.2 2.2E-10 4.7E-15 97.8 14.2 93 41-167 122-226 (322)
61 TIGR00080 pimt protein-L-isoas 99.2 6.8E-11 1.5E-15 95.1 9.9 93 39-168 75-178 (215)
62 TIGR00536 hemK_fam HemK family 99.2 2.2E-10 4.9E-15 96.0 13.2 124 43-189 116-267 (284)
63 TIGR03533 L3_gln_methyl protei 99.2 1E-10 2.3E-15 98.1 11.1 118 41-182 121-264 (284)
64 PRK14966 unknown domain/N5-glu 99.2 2.7E-10 5.8E-15 99.7 14.0 131 39-190 249-404 (423)
65 TIGR00452 methyltransferase, p 99.2 2.9E-10 6.3E-15 96.6 13.8 108 25-167 106-225 (314)
66 TIGR00406 prmA ribosomal prote 99.2 1.7E-10 3.6E-15 97.0 12.3 112 40-189 158-281 (288)
67 PRK13942 protein-L-isoaspartat 99.2 7.7E-11 1.7E-15 94.8 9.7 92 39-167 74-176 (212)
68 PRK08317 hypothetical protein; 99.2 1.2E-10 2.5E-15 93.6 10.9 98 39-167 17-124 (241)
69 PLN02490 MPBQ/MSBQ methyltrans 99.2 2.9E-10 6.3E-15 97.5 13.6 119 39-189 111-254 (340)
70 COG2242 CobL Precorrin-6B meth 99.2 2.5E-10 5.4E-15 89.5 11.9 116 39-190 32-160 (187)
71 PRK11036 putative S-adenosyl-L 99.2 9.9E-11 2.1E-15 96.5 10.1 97 40-169 43-151 (255)
72 TIGR00740 methyltransferase, p 99.2 1.9E-10 4E-15 93.9 11.3 98 40-167 52-161 (239)
73 PRK11088 rrmA 23S rRNA methylt 99.2 1E-10 2.3E-15 97.3 10.0 101 40-176 84-190 (272)
74 PRK11705 cyclopropane fatty ac 99.2 1.2E-10 2.6E-15 101.6 10.5 96 39-168 165-268 (383)
75 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.4E-10 3.1E-15 95.3 10.4 99 39-167 54-164 (247)
76 PRK14968 putative methyltransf 99.2 7E-10 1.5E-14 86.4 13.8 119 40-183 22-164 (188)
77 TIGR01177 conserved hypothetic 99.2 5E-10 1.1E-14 95.7 14.1 113 39-176 180-303 (329)
78 TIGR00477 tehB tellurite resis 99.2 1.1E-10 2.4E-15 92.7 9.1 94 41-167 30-133 (195)
79 PLN02336 phosphoethanolamine N 99.2 1.6E-10 3.5E-15 103.1 11.1 97 39-168 264-370 (475)
80 PRK07402 precorrin-6B methylas 99.2 2.8E-10 6.1E-15 90.2 11.4 109 39-182 38-157 (196)
81 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.2 1.4E-10 3E-15 97.3 9.7 126 40-183 84-238 (283)
82 PRK14121 tRNA (guanine-N(7)-)- 99.2 2E-10 4.4E-15 99.7 10.9 105 41-169 122-237 (390)
83 PRK06922 hypothetical protein; 99.2 1.7E-10 3.8E-15 105.3 10.2 108 41-167 418-537 (677)
84 PRK04457 spermidine synthase; 99.1 7.8E-10 1.7E-14 91.8 12.7 120 40-186 65-197 (262)
85 KOG1122 tRNA and rRNA cytosine 99.1 5E-10 1.1E-14 96.9 11.7 126 40-183 240-390 (460)
86 PRK11805 N5-glutamine S-adenos 99.1 2.9E-10 6.4E-15 96.4 10.2 105 43-169 135-265 (307)
87 PRK01544 bifunctional N5-gluta 99.1 5.6E-10 1.2E-14 100.6 12.6 126 41-189 138-291 (506)
88 PRK13944 protein-L-isoaspartat 99.1 5.1E-10 1.1E-14 89.6 10.8 91 40-167 71-173 (205)
89 PF13649 Methyltransf_25: Meth 99.1 1.4E-10 3E-15 82.3 6.2 90 45-161 1-101 (101)
90 PF13489 Methyltransf_23: Meth 99.1 1E-10 2.2E-15 88.5 5.8 99 39-171 20-119 (161)
91 PLN02396 hexaprenyldihydroxybe 99.1 2.9E-10 6.3E-15 96.9 8.7 95 41-169 131-237 (322)
92 TIGR00478 tly hemolysin TlyA f 99.1 3.9E-10 8.4E-15 91.8 9.1 112 19-167 53-171 (228)
93 PF08242 Methyltransf_12: Meth 99.1 1.2E-10 2.5E-15 82.1 5.3 88 46-163 1-99 (99)
94 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.5E-09 3.2E-14 101.3 13.5 107 40-167 537-656 (702)
95 PRK00811 spermidine synthase; 99.1 8.1E-10 1.8E-14 92.7 10.7 125 40-191 75-219 (283)
96 PF05401 NodS: Nodulation prot 99.1 7.9E-10 1.7E-14 87.4 9.9 115 43-189 45-177 (201)
97 PRK15128 23S rRNA m(5)C1962 me 99.1 1.5E-09 3.2E-14 95.1 12.5 123 40-182 219-355 (396)
98 smart00828 PKS_MT Methyltransf 99.1 4E-10 8.6E-15 90.7 8.2 93 43-168 1-105 (224)
99 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 8.5E-10 1.8E-14 88.0 10.0 99 40-169 38-145 (223)
100 PRK12335 tellurite resistance 99.1 8.4E-10 1.8E-14 92.6 10.3 91 42-166 121-222 (287)
101 COG2227 UbiG 2-polyprenyl-3-me 99.1 2.2E-10 4.8E-15 92.9 6.2 95 41-169 59-163 (243)
102 PRK00517 prmA ribosomal protei 99.1 1.3E-09 2.8E-14 89.7 10.6 114 39-188 117-235 (250)
103 COG2519 GCD14 tRNA(1-methylade 99.1 1.1E-09 2.3E-14 89.5 9.6 112 39-187 92-216 (256)
104 PHA03411 putative methyltransf 99.0 1.5E-09 3.2E-14 90.3 10.2 103 41-165 64-181 (279)
105 PRK00216 ubiE ubiquinone/menaq 99.0 4.7E-09 1E-13 84.6 12.9 99 40-169 50-160 (239)
106 PF03848 TehB: Tellurite resis 99.0 7.9E-10 1.7E-14 87.7 8.0 100 35-168 25-134 (192)
107 TIGR03840 TMPT_Se_Te thiopurin 99.0 1.7E-09 3.7E-14 87.2 9.6 115 40-185 33-181 (213)
108 COG2264 PrmA Ribosomal protein 99.0 6.7E-10 1.4E-14 93.3 7.1 120 40-189 161-286 (300)
109 KOG1271 Methyltransferases [Ge 99.0 6.6E-10 1.4E-14 86.7 6.5 116 43-183 69-196 (227)
110 TIGR03587 Pse_Me-ase pseudamin 99.0 3E-09 6.4E-14 85.2 10.4 99 37-168 39-143 (204)
111 PHA03412 putative methyltransf 99.0 1.3E-09 2.8E-14 88.8 8.4 104 42-165 50-160 (241)
112 COG1092 Predicted SAM-dependen 99.0 4.1E-09 8.9E-14 91.8 11.7 119 41-179 217-349 (393)
113 PLN02336 phosphoethanolamine N 99.0 1.2E-09 2.7E-14 97.4 8.8 97 41-167 37-142 (475)
114 PRK05785 hypothetical protein; 99.0 2.7E-09 5.9E-14 86.7 9.9 88 40-160 50-140 (226)
115 COG2890 HemK Methylase of poly 99.0 7E-09 1.5E-13 86.9 12.5 115 44-182 113-252 (280)
116 PF07021 MetW: Methionine bios 99.0 1.5E-09 3.2E-14 85.6 7.4 100 37-171 9-112 (193)
117 PF08704 GCD14: tRNA methyltra 99.0 2.8E-09 6E-14 87.7 9.2 118 39-189 38-169 (247)
118 KOG1975 mRNA cap methyltransfe 99.0 1.3E-09 2.8E-14 91.6 7.2 117 40-182 116-249 (389)
119 PLN02366 spermidine synthase 99.0 5.5E-09 1.2E-13 88.7 11.1 124 40-189 90-233 (308)
120 PRK00312 pcm protein-L-isoaspa 99.0 5.2E-09 1.1E-13 83.8 10.2 90 39-168 76-176 (212)
121 PRK13943 protein-L-isoaspartat 99.0 4.5E-09 9.9E-14 89.6 10.0 92 39-167 78-180 (322)
122 PF06325 PrmA: Ribosomal prote 99.0 4.7E-09 1E-13 88.5 9.9 109 39-187 159-279 (295)
123 PLN03075 nicotianamine synthas 99.0 4E-09 8.7E-14 88.7 9.4 97 41-167 123-233 (296)
124 smart00138 MeTrc Methyltransfe 99.0 3.7E-09 8E-14 87.9 9.0 100 41-165 99-240 (264)
125 PF01135 PCMT: Protein-L-isoas 98.9 2.7E-09 5.9E-14 85.8 7.6 93 39-168 70-173 (209)
126 cd02440 AdoMet_MTases S-adenos 98.9 1.8E-08 3.9E-13 69.0 9.3 92 44-166 1-103 (107)
127 PF10672 Methyltrans_SAM: S-ad 98.9 7.9E-09 1.7E-13 86.7 8.3 118 40-181 122-253 (286)
128 PRK13255 thiopurine S-methyltr 98.9 1.6E-08 3.4E-13 81.9 9.6 115 40-185 36-184 (218)
129 KOG2198 tRNA cytosine-5-methyl 98.9 3.2E-08 6.9E-13 84.7 11.8 141 40-189 154-321 (375)
130 TIGR00417 speE spermidine synt 98.9 3.8E-08 8.2E-13 82.0 12.0 124 40-190 71-213 (270)
131 PF03291 Pox_MCEL: mRNA cappin 98.9 6.7E-09 1.5E-13 88.9 7.5 104 41-169 62-188 (331)
132 TIGR03438 probable methyltrans 98.9 3.8E-08 8.2E-13 83.2 11.9 106 39-168 61-178 (301)
133 TIGR02716 C20_methyl_CrtF C-20 98.8 9.4E-09 2E-13 86.8 8.0 98 39-168 147-255 (306)
134 PLN02672 methionine S-methyltr 98.8 3.7E-08 8.1E-13 94.9 12.4 128 42-190 119-302 (1082)
135 KOG1270 Methyltransferases [Co 98.8 1.4E-08 3E-13 83.3 7.9 89 42-167 90-195 (282)
136 PLN02781 Probable caffeoyl-CoA 98.8 3.6E-08 7.8E-13 80.6 10.1 99 40-166 67-177 (234)
137 smart00650 rADc Ribosomal RNA 98.8 2.7E-08 6E-13 77.0 8.9 93 40-167 12-113 (169)
138 PRK03612 spermidine synthase; 98.8 2.6E-08 5.5E-13 90.2 9.9 122 40-188 296-440 (521)
139 PRK10909 rsmD 16S rRNA m(2)G96 98.8 3.3E-08 7.1E-13 79.0 8.8 102 40-172 52-164 (199)
140 PRK06202 hypothetical protein; 98.8 7.5E-08 1.6E-12 78.1 10.9 98 40-165 59-164 (232)
141 KOG4300 Predicted methyltransf 98.8 2.9E-08 6.3E-13 79.0 7.8 110 44-185 79-200 (252)
142 PF02390 Methyltransf_4: Putat 98.8 1.6E-08 3.4E-13 80.6 6.3 104 42-167 18-133 (195)
143 PRK01581 speE spermidine synth 98.7 1.3E-07 2.8E-12 81.6 11.8 125 40-190 149-295 (374)
144 COG2521 Predicted archaeal met 98.7 2.3E-07 4.9E-12 75.2 12.4 121 40-189 133-275 (287)
145 PF08003 Methyltransf_9: Prote 98.7 2.4E-07 5.3E-12 77.8 11.7 116 41-190 115-266 (315)
146 PLN02476 O-methyltransferase 98.7 2.9E-07 6.3E-12 77.0 10.9 99 40-166 117-227 (278)
147 TIGR02081 metW methionine bios 98.7 4E-08 8.6E-13 77.7 5.4 71 39-129 11-85 (194)
148 PRK05134 bifunctional 3-demeth 98.7 1.5E-07 3.2E-12 76.2 8.9 96 40-168 47-152 (233)
149 PF01269 Fibrillarin: Fibrilla 98.6 8.1E-08 1.8E-12 77.3 7.0 99 39-167 71-178 (229)
150 TIGR01983 UbiG ubiquinone bios 98.6 2.3E-07 5E-12 74.4 9.7 95 41-168 45-150 (224)
151 COG2518 Pcm Protein-L-isoaspar 98.6 2.5E-07 5.3E-12 74.1 9.7 90 39-168 70-170 (209)
152 PRK11727 23S rRNA mA1618 methy 98.6 8.3E-07 1.8E-11 75.7 13.2 130 41-189 114-290 (321)
153 TIGR00479 rumA 23S rRNA (uraci 98.6 5.6E-07 1.2E-11 79.6 12.5 107 40-180 291-408 (431)
154 COG0220 Predicted S-adenosylme 98.6 2.1E-07 4.5E-12 75.7 9.0 102 43-167 50-164 (227)
155 TIGR02021 BchM-ChlM magnesium 98.6 1.8E-07 3.8E-12 75.2 8.3 91 40-165 54-156 (219)
156 PRK13168 rumA 23S rRNA m(5)U19 98.6 6.9E-07 1.5E-11 79.4 12.4 94 40-167 296-400 (443)
157 PRK03522 rumB 23S rRNA methylu 98.6 5.8E-07 1.3E-11 76.4 11.3 66 41-128 173-249 (315)
158 KOG2904 Predicted methyltransf 98.6 7E-07 1.5E-11 73.9 10.4 107 42-168 149-286 (328)
159 COG3963 Phospholipid N-methylt 98.6 4.2E-07 9.1E-12 70.2 8.5 112 40-175 47-164 (194)
160 KOG2361 Predicted methyltransf 98.5 1.9E-07 4.2E-12 75.9 6.5 106 44-173 74-189 (264)
161 PF01596 Methyltransf_3: O-met 98.5 3E-07 6.6E-12 73.7 6.9 99 40-166 44-154 (205)
162 COG1041 Predicted DNA modifica 98.5 1.8E-06 3.9E-11 73.8 10.9 121 39-189 195-328 (347)
163 COG2263 Predicted RNA methylas 98.5 7.2E-07 1.6E-11 70.2 7.7 67 41-132 45-121 (198)
164 PLN02823 spermine synthase 98.4 2.4E-06 5.1E-11 73.5 11.1 124 41-190 103-249 (336)
165 PRK07580 Mg-protoporphyrin IX 98.4 8.3E-07 1.8E-11 71.4 7.9 63 40-128 62-136 (230)
166 TIGR00095 RNA methyltransferas 98.4 1.2E-06 2.7E-11 69.3 8.7 100 41-169 49-161 (189)
167 KOG3010 Methyltransferase [Gen 98.4 6.9E-07 1.5E-11 72.7 7.1 138 1-182 1-154 (261)
168 PRK13256 thiopurine S-methyltr 98.4 1.6E-06 3.4E-11 70.5 9.0 101 40-169 42-165 (226)
169 COG0421 SpeE Spermidine syntha 98.4 3.9E-06 8.5E-11 70.4 10.9 121 43-191 78-218 (282)
170 KOG1541 Predicted protein carb 98.4 1.3E-06 2.7E-11 70.4 7.4 107 42-170 51-163 (270)
171 PF05148 Methyltransf_8: Hypot 98.4 3.7E-06 8E-11 67.3 9.9 106 40-185 71-179 (219)
172 PF01170 UPF0020: Putative RNA 98.4 5.8E-06 1.3E-10 64.9 10.8 119 40-175 27-157 (179)
173 PRK01544 bifunctional N5-gluta 98.4 1.9E-06 4.1E-11 77.9 9.0 105 40-167 346-462 (506)
174 PF03602 Cons_hypoth95: Conser 98.4 5.5E-07 1.2E-11 71.0 4.7 100 41-170 42-156 (183)
175 KOG3191 Predicted N6-DNA-methy 98.3 8.3E-06 1.8E-10 63.9 11.0 121 42-183 44-184 (209)
176 TIGR02085 meth_trns_rumB 23S r 98.3 5.7E-06 1.2E-10 72.0 10.8 95 41-172 233-338 (374)
177 COG4122 Predicted O-methyltran 98.3 2.9E-06 6.3E-11 68.6 8.2 95 40-166 58-165 (219)
178 PF05724 TPMT: Thiopurine S-me 98.3 2.6E-06 5.6E-11 69.0 7.8 116 39-185 35-184 (218)
179 KOG1500 Protein arginine N-met 98.3 1.9E-06 4.1E-11 73.3 7.0 93 41-165 177-280 (517)
180 KOG1596 Fibrillarin and relate 98.3 2.1E-06 4.6E-11 70.0 6.8 100 39-168 154-262 (317)
181 PLN02585 magnesium protoporphy 98.3 7.3E-06 1.6E-10 69.9 10.3 62 41-128 144-221 (315)
182 PF00891 Methyltransf_2: O-met 98.3 1.3E-05 2.8E-10 65.3 11.2 96 39-167 98-199 (241)
183 PF01564 Spermine_synth: Sperm 98.3 8.4E-06 1.8E-10 67.2 9.9 126 40-191 75-219 (246)
184 PF02475 Met_10: Met-10+ like- 98.3 1.8E-06 3.9E-11 69.0 5.5 89 39-164 99-199 (200)
185 PLN02589 caffeoyl-CoA O-methyl 98.2 4.9E-06 1.1E-10 68.6 8.2 98 41-166 79-189 (247)
186 PRK14896 ksgA 16S ribosomal RN 98.2 3.6E-06 7.9E-11 69.6 7.4 67 39-130 27-102 (258)
187 PRK04338 N(2),N(2)-dimethylgua 98.2 5.7E-06 1.2E-10 72.3 8.8 90 42-167 58-158 (382)
188 PRK00050 16S rRNA m(4)C1402 me 98.2 7.2E-06 1.6E-10 69.3 8.5 70 40-127 18-98 (296)
189 TIGR00755 ksgA dimethyladenosi 98.2 1.1E-05 2.5E-10 66.4 9.3 65 40-129 28-104 (253)
190 KOG1499 Protein arginine N-met 98.2 5.9E-06 1.3E-10 70.5 7.5 94 41-164 60-164 (346)
191 COG1889 NOP1 Fibrillarin-like 98.2 1.8E-05 4E-10 62.9 9.5 96 39-165 74-178 (231)
192 PRK05031 tRNA (uracil-5-)-meth 98.2 1.9E-05 4.2E-10 68.5 10.6 70 42-128 207-297 (362)
193 PRK00274 ksgA 16S ribosomal RN 98.1 5E-06 1.1E-10 69.3 6.4 68 40-130 41-116 (272)
194 PF05185 PRMT5: PRMT5 arginine 98.1 2.3E-06 5.1E-11 76.1 4.6 97 41-164 186-294 (448)
195 PF05219 DREV: DREV methyltran 98.1 8E-06 1.7E-10 67.3 7.0 90 42-167 95-188 (265)
196 COG4976 Predicted methyltransf 98.1 2.1E-06 4.5E-11 69.6 3.3 97 43-169 127-227 (287)
197 COG0742 N6-adenine-specific me 98.1 2.5E-05 5.5E-10 61.6 9.1 101 41-169 43-156 (187)
198 PF10294 Methyltransf_16: Puta 98.1 0.00012 2.7E-09 57.0 12.5 116 39-182 43-172 (173)
199 TIGR02143 trmA_only tRNA (urac 98.1 2.9E-05 6.3E-10 67.2 9.7 70 42-128 198-288 (353)
200 KOG2915 tRNA(1-methyladenosine 98.1 2.6E-05 5.6E-10 64.7 8.9 116 40-189 104-233 (314)
201 PTZ00338 dimethyladenosine tra 98.1 1.1E-05 2.3E-10 68.3 6.7 67 39-130 34-112 (294)
202 PF06080 DUF938: Protein of un 98.1 1.3E-05 2.7E-10 64.1 6.7 105 40-166 23-140 (204)
203 KOG1663 O-methyltransferase [S 98.0 3.8E-05 8.3E-10 62.2 9.2 98 41-166 73-182 (237)
204 PF04989 CmcI: Cephalosporin h 98.0 2.6E-05 5.7E-10 62.4 8.2 104 41-165 32-145 (206)
205 KOG3045 Predicted RNA methylas 98.0 5E-05 1.1E-09 62.7 9.4 103 41-185 180-285 (325)
206 PRK00536 speE spermidine synth 98.0 7.6E-05 1.7E-09 62.0 10.6 109 40-190 71-198 (262)
207 KOG2899 Predicted methyltransf 98.0 3E-05 6.5E-10 63.4 7.9 34 42-88 59-92 (288)
208 PF02384 N6_Mtase: N-6 DNA Met 98.0 4.3E-06 9.4E-11 70.6 2.9 116 40-167 45-183 (311)
209 PRK04148 hypothetical protein; 98.0 7.1E-05 1.5E-09 56.1 9.0 94 41-172 16-114 (134)
210 PF03141 Methyltransf_29: Puta 98.0 5.3E-06 1.1E-10 73.8 3.0 98 43-168 119-220 (506)
211 KOG1661 Protein-L-isoaspartate 97.9 2.1E-05 4.6E-10 62.9 6.0 95 38-168 79-194 (237)
212 PF12147 Methyltransf_20: Puta 97.9 9.8E-05 2.1E-09 61.9 9.6 102 41-166 135-248 (311)
213 PF13578 Methyltransf_24: Meth 97.9 1.1E-05 2.4E-10 57.3 3.5 92 46-165 1-103 (106)
214 KOG3420 Predicted RNA methylas 97.9 3.9E-05 8.4E-10 58.2 6.4 81 29-132 37-127 (185)
215 COG2933 Predicted SAM-dependen 97.9 2.8E-05 6E-10 64.3 5.6 82 22-127 185-278 (358)
216 COG2265 TrmA SAM-dependent met 97.8 0.0002 4.3E-09 63.6 11.0 70 40-129 292-372 (432)
217 PF09445 Methyltransf_15: RNA 97.8 1.8E-05 3.9E-10 61.3 3.6 117 43-183 1-135 (163)
218 COG0030 KsgA Dimethyladenosine 97.8 0.00014 3.1E-09 60.2 8.5 77 31-130 21-106 (259)
219 TIGR02987 met_A_Alw26 type II 97.7 0.0004 8.7E-09 63.0 11.7 82 41-130 31-123 (524)
220 TIGR00308 TRM1 tRNA(guanine-26 97.7 0.00014 3.1E-09 63.4 8.3 92 42-167 45-147 (374)
221 COG2520 Predicted methyltransf 97.7 0.00035 7.5E-09 60.1 10.3 96 40-172 187-294 (341)
222 COG4076 Predicted RNA methylas 97.7 7.5E-05 1.6E-09 59.0 5.6 90 42-165 33-133 (252)
223 PF08123 DOT1: Histone methyla 97.7 0.00038 8.2E-09 55.9 9.4 104 31-165 33-156 (205)
224 PF02527 GidB: rRNA small subu 97.6 0.00029 6.3E-09 55.6 7.2 86 43-165 50-146 (184)
225 PF06460 NSP13: Coronavirus NS 97.6 0.0014 2.9E-08 54.2 11.0 125 40-191 60-192 (299)
226 PF01739 CheR: CheR methyltran 97.6 0.00015 3.2E-09 57.8 5.4 100 41-165 31-173 (196)
227 TIGR03439 methyl_EasF probable 97.5 0.0032 6.9E-08 53.9 13.5 127 21-166 54-196 (319)
228 PRK11524 putative methyltransf 97.5 0.00086 1.9E-08 56.2 9.6 90 94-190 8-102 (284)
229 PF05958 tRNA_U5-meth_tr: tRNA 97.5 0.00042 9.1E-09 60.0 7.8 73 43-130 198-289 (352)
230 KOG2187 tRNA uracil-5-methyltr 97.5 0.00021 4.6E-09 63.8 6.0 64 22-100 364-438 (534)
231 PF14314 Methyltrans_Mon: Viru 97.5 0.0046 9.9E-08 57.5 14.7 160 9-190 292-482 (675)
232 KOG0820 Ribosomal RNA adenine 97.5 0.00075 1.6E-08 56.2 8.3 76 29-130 47-134 (315)
233 KOG2940 Predicted methyltransf 97.4 0.00021 4.6E-09 58.2 4.7 106 40-178 71-185 (325)
234 COG0357 GidB Predicted S-adeno 97.4 0.00048 1E-08 55.6 6.4 89 42-167 68-168 (215)
235 PRK10611 chemotaxis methyltran 97.3 0.00088 1.9E-08 56.4 6.9 98 43-165 117-260 (287)
236 PF03141 Methyltransf_29: Puta 97.2 0.00036 7.8E-09 62.4 4.3 104 43-183 367-478 (506)
237 COG4798 Predicted methyltransf 97.2 0.0015 3.3E-08 51.9 7.3 38 39-88 46-83 (238)
238 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0049 1.1E-07 58.0 12.0 121 37-167 186-347 (702)
239 PLN02232 ubiquinone biosynthes 97.2 0.0011 2.3E-08 50.9 6.0 60 93-171 26-85 (160)
240 PF00398 RrnaAD: Ribosomal RNA 97.1 0.001 2.2E-08 55.1 5.2 70 40-129 29-107 (262)
241 PRK13699 putative methylase; P 96.9 0.0067 1.5E-07 49.4 8.4 85 96-188 3-93 (227)
242 COG1352 CheR Methylase of chem 96.9 0.0048 1E-07 51.5 7.6 99 42-165 97-239 (268)
243 COG3897 Predicted methyltransf 96.9 0.0036 7.9E-08 49.8 6.5 94 41-172 79-182 (218)
244 COG0275 Predicted S-adenosylme 96.6 0.078 1.7E-06 44.9 13.1 73 40-127 22-104 (314)
245 KOG3115 Methyltransferase-like 96.6 0.0041 8.8E-08 49.9 5.1 34 42-88 61-94 (249)
246 PF11968 DUF3321: Putative met 96.6 0.008 1.7E-07 48.5 6.9 113 42-187 52-177 (219)
247 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.6 0.00028 6E-09 58.5 -1.7 103 41-166 56-198 (256)
248 KOG3178 Hydroxyindole-O-methyl 96.6 0.018 3.8E-07 49.5 9.1 97 39-168 175-276 (342)
249 COG0500 SmtA SAM-dependent met 96.6 0.019 4.1E-07 40.5 8.2 95 45-170 52-158 (257)
250 PF04672 Methyltransf_19: S-ad 96.5 0.023 4.9E-07 47.4 9.2 109 43-172 70-195 (267)
251 PRK10742 putative methyltransf 96.5 0.0062 1.3E-07 50.2 5.5 69 40-130 85-175 (250)
252 KOG1331 Predicted methyltransf 96.5 0.0083 1.8E-07 50.2 6.2 99 40-171 44-147 (293)
253 PF05891 Methyltransf_PK: AdoM 96.4 0.0018 4E-08 52.2 2.1 94 42-167 56-161 (218)
254 TIGR01444 fkbM_fam methyltrans 96.4 0.0042 9.1E-08 46.1 3.9 48 44-104 1-59 (143)
255 KOG1269 SAM-dependent methyltr 96.4 0.0025 5.5E-08 55.4 3.0 96 40-168 109-216 (364)
256 PF13679 Methyltransf_32: Meth 96.4 0.0058 1.3E-07 45.8 4.6 41 40-89 24-64 (141)
257 PF06962 rRNA_methylase: Putat 96.4 0.006 1.3E-07 46.0 4.6 85 80-172 1-97 (140)
258 TIGR00006 S-adenosyl-methyltra 96.2 0.019 4.2E-07 48.7 7.3 72 40-127 19-100 (305)
259 KOG2671 Putative RNA methylase 95.9 0.03 6.4E-07 48.3 7.1 108 38-167 205-354 (421)
260 PF09243 Rsm22: Mitochondrial 95.9 0.015 3.3E-07 48.5 5.0 48 29-89 22-69 (274)
261 COG3510 CmcI Cephalosporin hyd 95.8 0.21 4.5E-06 39.9 10.6 106 41-167 69-180 (237)
262 KOG2360 Proliferation-associat 95.7 0.011 2.3E-07 51.5 3.5 80 40-137 212-302 (413)
263 KOG2730 Methylase [General fun 95.6 0.022 4.7E-07 46.3 4.5 70 42-130 95-176 (263)
264 COG0286 HsdM Type I restrictio 95.5 0.035 7.6E-07 50.2 6.3 117 40-168 185-327 (489)
265 PF10354 DUF2431: Domain of un 95.5 0.27 5.8E-06 38.1 10.4 110 47-172 2-130 (166)
266 COG4262 Predicted spermidine s 95.3 0.071 1.5E-06 46.5 7.3 104 42-172 290-412 (508)
267 COG0116 Predicted N6-adenine-s 95.3 0.24 5.2E-06 43.4 10.3 117 40-167 190-344 (381)
268 PF12692 Methyltransf_17: S-ad 95.2 0.19 4.1E-06 38.3 8.3 100 42-165 29-132 (160)
269 KOG2352 Predicted spermine/spe 94.5 0.7 1.5E-05 41.6 11.5 106 40-168 46-162 (482)
270 cd00315 Cyt_C5_DNA_methylase C 94.5 0.066 1.4E-06 44.7 4.9 66 44-130 2-73 (275)
271 cd08283 FDH_like_1 Glutathione 94.4 0.46 1E-05 41.2 10.1 113 39-166 182-305 (386)
272 PF03269 DUF268: Caenorhabditi 94.2 0.26 5.7E-06 38.2 7.1 109 42-167 2-111 (177)
273 COG5459 Predicted rRNA methyla 94.0 0.036 7.8E-07 48.0 2.2 36 42-89 114-149 (484)
274 COG1063 Tdh Threonine dehydrog 94.0 0.52 1.1E-05 40.6 9.5 97 40-167 167-269 (350)
275 KOG1709 Guanidinoacetate methy 93.8 0.55 1.2E-05 38.3 8.5 93 40-164 100-203 (271)
276 KOG0024 Sorbitol dehydrogenase 93.8 0.48 1E-05 40.7 8.6 104 39-171 167-277 (354)
277 COG1064 AdhP Zn-dependent alco 93.7 0.42 9.1E-06 41.3 8.3 89 39-166 164-258 (339)
278 PF07757 AdoMet_MTase: Predict 93.7 0.098 2.1E-06 37.7 3.7 34 40-88 57-90 (112)
279 PF01795 Methyltransf_5: MraW 93.7 0.43 9.4E-06 40.7 8.2 72 40-127 19-101 (310)
280 KOG2651 rRNA adenine N-6-methy 93.6 0.14 3.1E-06 44.7 5.2 36 39-88 151-186 (476)
281 KOG3987 Uncharacterized conser 93.6 0.021 4.5E-07 46.1 0.1 87 42-166 113-206 (288)
282 PF03059 NAS: Nicotianamine sy 93.3 0.46 1E-05 39.9 7.6 97 42-168 121-231 (276)
283 KOG1562 Spermidine synthase [A 93.2 0.41 8.9E-06 40.6 7.2 122 41-188 121-261 (337)
284 cd08254 hydroxyacyl_CoA_DH 6-h 93.0 1.3 2.8E-05 36.9 10.0 97 37-166 161-262 (338)
285 PF11599 AviRa: RRNA methyltra 92.9 1.4 2.9E-05 35.9 9.4 115 35-166 43-212 (246)
286 KOG3201 Uncharacterized conser 92.9 0.14 3E-06 39.8 3.6 114 42-181 30-152 (201)
287 PF05971 Methyltransf_10: Prot 92.7 0.32 6.9E-06 41.3 6.0 71 42-132 103-190 (299)
288 PF00145 DNA_methylase: C-5 cy 92.7 0.082 1.8E-06 44.2 2.5 65 43-129 1-71 (335)
289 PF01555 N6_N4_Mtase: DNA meth 92.4 0.35 7.7E-06 38.0 5.6 50 120-169 1-58 (231)
290 PF01861 DUF43: Protein of unk 92.1 0.39 8.5E-06 39.5 5.6 97 41-170 44-151 (243)
291 PHA01634 hypothetical protein 91.5 0.36 7.8E-06 36.1 4.3 43 33-89 19-62 (156)
292 TIGR03451 mycoS_dep_FDH mycoth 91.4 1.7 3.6E-05 37.2 9.1 97 39-166 174-275 (358)
293 PF04445 SAM_MT: Putative SAM- 91.1 0.12 2.5E-06 42.4 1.5 69 40-130 72-162 (234)
294 PF05206 TRM13: Methyltransfer 91.0 0.72 1.6E-05 38.4 6.2 71 29-107 6-87 (259)
295 KOG1209 1-Acyl dihydroxyaceton 91.0 2 4.3E-05 35.2 8.4 79 40-129 5-91 (289)
296 PF07942 N2227: N2227-like pro 90.6 1 2.3E-05 37.7 6.8 33 41-88 56-88 (270)
297 PF03686 UPF0146: Uncharacteri 90.6 1.5 3.3E-05 32.5 6.9 95 42-173 14-108 (127)
298 PRK08177 short chain dehydroge 90.6 7.1 0.00015 30.7 11.6 73 44-128 3-80 (225)
299 PF00107 ADH_zinc_N: Zinc-bind 90.4 0.62 1.3E-05 33.5 4.8 87 52-170 2-92 (130)
300 COG1255 Uncharacterized protei 89.1 0.87 1.9E-05 33.3 4.5 65 43-128 15-79 (129)
301 PF01555 N6_N4_Mtase: DNA meth 89.0 0.45 9.8E-06 37.4 3.3 34 40-88 190-223 (231)
302 PF07091 FmrO: Ribosomal RNA m 88.7 0.6 1.3E-05 38.6 3.9 42 34-88 98-139 (251)
303 cd05188 MDR Medium chain reduc 88.7 7.9 0.00017 30.7 10.5 98 36-166 129-231 (271)
304 cd08281 liver_ADH_like1 Zinc-d 88.6 3.4 7.4E-05 35.5 8.8 96 39-166 189-289 (371)
305 PRK09424 pntA NAD(P) transhydr 87.9 4.2 9.2E-05 37.1 9.2 104 40-168 163-286 (509)
306 KOG2078 tRNA modification enzy 87.6 0.25 5.5E-06 43.8 1.1 37 38-89 246-282 (495)
307 TIGR03201 dearomat_had 6-hydro 87.6 4.4 9.5E-05 34.4 8.8 96 39-166 164-271 (349)
308 PF02254 TrkA_N: TrkA-N domain 87.6 2 4.3E-05 30.3 5.7 92 50-171 4-100 (116)
309 PRK07533 enoyl-(acyl carrier p 87.4 9 0.00019 31.0 10.2 77 41-128 9-97 (258)
310 PRK11524 putative methyltransf 87.4 0.71 1.5E-05 38.6 3.6 35 40-89 207-241 (284)
311 PF04816 DUF633: Family of unk 86.6 3.1 6.7E-05 33.3 6.8 47 45-104 1-59 (205)
312 PRK07806 short chain dehydroge 86.4 6.1 0.00013 31.4 8.6 114 41-166 5-133 (248)
313 COG0270 Dcm Site-specific DNA 86.2 1.5 3.2E-05 37.6 5.0 69 42-129 3-77 (328)
314 PF06859 Bin3: Bicoid-interact 85.7 1.2 2.6E-05 32.2 3.6 21 147-167 24-44 (110)
315 PF10237 N6-adenineMlase: Prob 85.7 13 0.00028 28.7 9.5 96 41-165 25-121 (162)
316 PRK05993 short chain dehydroge 85.6 15 0.00032 30.0 10.7 76 41-128 3-85 (277)
317 TIGR00675 dcm DNA-methyltransf 85.0 1 2.2E-05 38.4 3.4 63 45-129 1-69 (315)
318 KOG4022 Dihydropteridine reduc 84.7 18 0.00038 28.5 9.8 110 44-165 5-127 (236)
319 TIGR00497 hsdM type I restrict 84.6 11 0.00023 34.3 10.1 111 40-165 216-353 (501)
320 COG0604 Qor NADPH:quinone redu 84.5 16 0.00034 31.3 10.5 105 32-169 133-243 (326)
321 KOG2920 Predicted methyltransf 84.2 1.3 2.9E-05 37.2 3.7 38 38-89 113-150 (282)
322 cd05278 FDH_like Formaldehyde 84.0 9.2 0.0002 32.0 8.9 94 39-165 165-265 (347)
323 PLN03154 putative allyl alcoho 83.9 18 0.00039 30.8 10.8 94 39-166 156-257 (348)
324 PRK06179 short chain dehydroge 82.6 24 0.00051 28.4 12.7 76 42-129 4-83 (270)
325 PRK13699 putative methylase; P 82.5 1.7 3.7E-05 35.3 3.7 35 40-89 162-196 (227)
326 PRK07326 short chain dehydroge 81.6 19 0.00041 28.2 9.5 76 41-128 5-91 (237)
327 PRK10458 DNA cytosine methylas 81.4 5.1 0.00011 36.2 6.6 74 42-129 88-179 (467)
328 KOG0822 Protein kinase inhibit 81.1 2.1 4.5E-05 39.2 3.9 96 43-166 369-477 (649)
329 KOG0023 Alcohol dehydrogenase, 80.9 17 0.00037 31.4 9.1 94 39-166 179-278 (360)
330 TIGR03589 PseB UDP-N-acetylglu 80.5 34 0.00073 28.8 11.6 72 42-128 4-83 (324)
331 PHA03108 poly(A) polymerase sm 80.3 30 0.00065 29.2 10.2 97 18-127 31-139 (300)
332 TIGR02825 B4_12hDH leukotriene 80.1 23 0.00049 29.5 9.9 95 39-166 136-236 (325)
333 PRK06196 oxidoreductase; Provi 79.8 27 0.00058 29.1 10.2 76 41-128 25-108 (315)
334 cd08261 Zn_ADH7 Alcohol dehydr 79.5 13 0.00029 31.0 8.3 94 39-166 157-257 (337)
335 cd08238 sorbose_phosphate_red 79.4 18 0.00038 31.6 9.3 100 39-166 173-287 (410)
336 PRK07889 enoyl-(acyl carrier p 79.2 32 0.00069 27.7 11.8 117 41-168 6-146 (256)
337 KOG2352 Predicted spermine/spe 79.1 8.3 0.00018 34.9 7.0 131 41-187 295-438 (482)
338 PRK01747 mnmC bifunctional tRN 78.4 10 0.00022 35.5 7.8 108 42-167 58-206 (662)
339 PRK06079 enoyl-(acyl carrier p 78.3 33 0.00072 27.5 11.9 77 41-128 6-92 (252)
340 PRK07454 short chain dehydroge 78.2 31 0.00068 27.1 10.1 76 41-128 5-92 (241)
341 COG1236 YSH1 Predicted exonucl 78.0 5.2 0.00011 35.6 5.5 66 120-190 181-248 (427)
342 cd08295 double_bond_reductase_ 77.8 31 0.00068 28.9 10.1 94 38-166 148-250 (338)
343 PRK07578 short chain dehydroge 77.8 29 0.00063 26.6 11.4 102 44-167 2-111 (199)
344 PRK06398 aldose dehydrogenase; 77.5 35 0.00077 27.4 12.1 74 42-128 6-81 (258)
345 COG1748 LYS9 Saccharopine dehy 77.2 11 0.00024 33.2 7.2 70 43-129 2-78 (389)
346 TIGR02622 CDP_4_6_dhtase CDP-g 76.8 45 0.00097 28.2 12.3 73 41-128 3-84 (349)
347 PLN02989 cinnamyl-alcohol dehy 76.8 42 0.00091 27.9 12.0 72 41-129 4-87 (325)
348 cd08230 glucose_DH Glucose deh 76.6 16 0.00036 30.9 8.1 91 40-166 171-268 (355)
349 PRK12428 3-alpha-hydroxysteroi 76.4 14 0.0003 29.5 7.3 85 78-166 9-95 (241)
350 PF02636 Methyltransf_28: Puta 76.4 10 0.00022 31.0 6.5 43 42-89 19-61 (252)
351 cd08285 NADP_ADH NADP(H)-depen 75.9 28 0.00061 29.3 9.3 95 39-166 164-265 (351)
352 cd08239 THR_DH_like L-threonin 75.4 21 0.00046 29.8 8.4 96 39-166 161-261 (339)
353 cd08236 sugar_DH NAD(P)-depend 75.0 23 0.0005 29.6 8.5 93 39-166 157-257 (343)
354 cd08278 benzyl_alcohol_DH Benz 74.9 34 0.00074 29.1 9.7 93 39-165 184-283 (365)
355 COG4627 Uncharacterized protei 74.8 5 0.00011 31.1 3.8 46 115-169 43-88 (185)
356 PF02005 TRM: N2,N2-dimethylgu 74.7 8.3 0.00018 33.8 5.8 92 42-167 50-154 (377)
357 KOG1253 tRNA methyltransferase 73.8 4 8.6E-05 37.0 3.6 96 41-167 109-216 (525)
358 cd08237 ribitol-5-phosphate_DH 72.9 17 0.00037 30.8 7.3 94 39-166 161-255 (341)
359 cd08233 butanediol_DH_like (2R 72.8 39 0.00085 28.4 9.4 97 39-166 170-271 (351)
360 cd08294 leukotriene_B4_DH_like 72.6 52 0.0011 27.1 10.0 94 39-166 141-240 (329)
361 PRK07984 enoyl-(acyl carrier p 72.5 51 0.0011 26.8 11.9 77 41-128 5-93 (262)
362 PRK07904 short chain dehydroge 72.4 33 0.00071 27.6 8.6 77 40-127 6-95 (253)
363 cd08258 Zn_ADH4 Alcohol dehydr 72.3 52 0.0011 27.2 9.9 98 39-168 162-265 (306)
364 cd08293 PTGR2 Prostaglandin re 71.5 48 0.001 27.7 9.6 94 39-166 150-253 (345)
365 PRK05786 fabG 3-ketoacyl-(acyl 71.5 47 0.001 26.0 11.2 115 41-167 4-135 (238)
366 PRK08324 short chain dehydroge 71.3 33 0.00072 32.3 9.3 115 41-167 421-557 (681)
367 TIGR02818 adh_III_F_hyde S-(hy 71.2 36 0.00079 29.1 9.0 95 39-167 183-287 (368)
368 cd05285 sorbitol_DH Sorbitol d 70.5 27 0.00059 29.3 7.9 98 38-166 159-264 (343)
369 PRK06940 short chain dehydroge 70.5 57 0.0012 26.6 11.2 107 44-165 4-123 (275)
370 PRK08594 enoyl-(acyl carrier p 70.4 55 0.0012 26.4 12.5 77 41-128 6-96 (257)
371 PLN02657 3,8-divinyl protochlo 70.2 29 0.00062 30.3 8.2 75 40-127 58-144 (390)
372 TIGR00006 S-adenosyl-methyltra 70.0 8.1 0.00018 33.0 4.5 26 147-172 220-245 (305)
373 KOG1197 Predicted quinone oxid 69.8 31 0.00066 29.2 7.6 101 35-166 140-244 (336)
374 PRK03659 glutathione-regulated 68.9 15 0.00032 34.2 6.4 102 44-176 402-507 (601)
375 PRK10309 galactitol-1-phosphat 68.5 47 0.001 27.9 9.0 97 39-166 158-259 (347)
376 PRK06523 short chain dehydroge 68.4 30 0.00066 27.6 7.5 76 41-128 8-86 (260)
377 cd08234 threonine_DH_like L-th 68.3 36 0.00079 28.2 8.2 95 39-166 157-256 (334)
378 TIGR03366 HpnZ_proposed putati 68.0 51 0.0011 26.9 8.9 96 40-167 119-218 (280)
379 PRK05396 tdh L-threonine 3-deh 67.9 45 0.00097 27.9 8.7 95 40-167 162-263 (341)
380 PRK00050 16S rRNA m(4)C1402 me 67.7 7.5 0.00016 33.0 3.8 35 147-181 216-250 (296)
381 TIGR03675 arCOG00543 arCOG0054 67.6 10 0.00022 35.6 5.0 70 118-191 363-438 (630)
382 COG1062 AdhC Zn-dependent alco 67.2 19 0.00041 31.4 6.1 97 40-166 184-284 (366)
383 KOG2793 Putative N2,N2-dimethy 66.9 73 0.0016 26.4 9.6 34 41-88 86-119 (248)
384 COG2910 Putative NADH-flavin r 66.9 25 0.00053 28.2 6.2 64 50-129 7-72 (211)
385 TIGR01472 gmd GDP-mannose 4,6- 66.3 78 0.0017 26.6 10.6 65 51-129 8-88 (343)
386 TIGR02822 adh_fam_2 zinc-bindi 65.6 40 0.00087 28.4 8.0 86 39-167 163-254 (329)
387 TIGR00692 tdh L-threonine 3-de 65.4 51 0.0011 27.5 8.6 97 39-166 159-260 (340)
388 PLN02586 probable cinnamyl alc 64.8 75 0.0016 27.1 9.6 92 39-166 181-277 (360)
389 KOG0821 Predicted ribosomal RN 64.4 13 0.00028 30.6 4.4 21 42-62 51-71 (326)
390 PRK06997 enoyl-(acyl carrier p 64.2 75 0.0016 25.6 9.4 77 41-128 5-93 (260)
391 PLN02695 GDP-D-mannose-3',5'-e 64.2 33 0.00072 29.6 7.3 86 26-128 5-94 (370)
392 KOG4058 Uncharacterized conser 64.1 4.3 9.3E-05 31.3 1.5 36 40-89 71-106 (199)
393 PF11899 DUF3419: Protein of u 63.7 15 0.00033 32.3 5.1 61 93-169 275-336 (380)
394 COG3129 Predicted SAM-dependen 63.6 2.9 6.2E-05 34.5 0.5 36 41-89 78-113 (292)
395 PRK06701 short chain dehydroge 63.5 83 0.0018 25.9 11.3 114 42-167 46-181 (290)
396 COG1867 TRM1 N2,N2-dimethylgua 63.4 18 0.00039 31.7 5.4 91 42-167 53-154 (380)
397 KOG1227 Putative methyltransfe 63.1 5.7 0.00012 34.0 2.2 91 41-168 194-296 (351)
398 PRK12481 2-deoxy-D-gluconate 3 63.0 77 0.0017 25.3 9.1 76 41-128 7-92 (251)
399 PLN02668 indole-3-acetate carb 62.7 6.5 0.00014 34.7 2.6 17 42-58 64-80 (386)
400 cd05281 TDH Threonine dehydrog 62.6 56 0.0012 27.3 8.3 95 40-166 162-261 (341)
401 PF05711 TylF: Macrocin-O-meth 62.6 41 0.00088 27.8 7.1 24 147-170 192-215 (248)
402 PRK08159 enoyl-(acyl carrier p 62.6 84 0.0018 25.6 10.8 115 42-167 10-148 (272)
403 PF05430 Methyltransf_30: S-ad 62.3 13 0.00028 27.3 3.8 57 95-167 33-90 (124)
404 KOG2782 Putative SAM dependent 62.1 3.1 6.7E-05 34.1 0.5 74 40-128 42-127 (303)
405 PF01795 Methyltransf_5: MraW 62.1 7.4 0.00016 33.3 2.8 36 147-182 221-256 (310)
406 PRK06505 enoyl-(acyl carrier p 62.0 86 0.0019 25.5 10.6 77 41-128 6-94 (271)
407 PLN02253 xanthoxin dehydrogena 61.9 83 0.0018 25.4 10.5 75 42-128 18-103 (280)
408 PLN02827 Alcohol dehydrogenase 61.9 87 0.0019 27.0 9.5 97 39-166 191-294 (378)
409 cd08232 idonate-5-DH L-idonate 61.8 35 0.00075 28.4 6.9 17 150-166 245-261 (339)
410 KOG1501 Arginine N-methyltrans 61.8 8.9 0.00019 34.6 3.3 31 44-88 69-99 (636)
411 cd08279 Zn_ADH_class_III Class 61.7 73 0.0016 27.0 9.0 97 39-166 180-281 (363)
412 PF11899 DUF3419: Protein of u 61.4 14 0.0003 32.5 4.4 36 39-89 33-68 (380)
413 KOG3924 Putative protein methy 61.1 27 0.00058 31.0 6.0 96 39-165 190-306 (419)
414 PF05050 Methyltransf_21: Meth 60.9 11 0.00023 27.9 3.2 31 47-89 1-34 (167)
415 KOG0022 Alcohol dehydrogenase, 60.9 40 0.00088 29.2 6.9 39 39-89 190-228 (375)
416 COG1568 Predicted methyltransf 60.4 99 0.0021 26.5 9.0 96 42-169 153-262 (354)
417 PRK10669 putative cation:proto 59.4 28 0.0006 31.9 6.3 91 50-169 423-517 (558)
418 PLN02740 Alcohol dehydrogenase 59.1 1.2E+02 0.0025 26.1 10.3 96 39-166 196-299 (381)
419 cd08231 MDR_TM0436_like Hypoth 58.1 1.1E+02 0.0025 25.7 10.1 98 38-165 174-278 (361)
420 PF01358 PARP_regulatory: Poly 57.9 1.2E+02 0.0026 25.8 11.9 95 20-127 30-136 (294)
421 PRK07023 short chain dehydroge 57.9 70 0.0015 25.2 7.8 74 43-128 2-86 (243)
422 TIGR02819 fdhA_non_GSH formald 57.4 1.1E+02 0.0023 26.7 9.4 19 148-166 280-298 (393)
423 cd08241 QOR1 Quinone oxidoredu 57.0 1E+02 0.0022 24.8 8.8 98 38-166 136-237 (323)
424 PRK08265 short chain dehydroge 56.7 1E+02 0.0022 24.7 11.7 75 42-128 6-89 (261)
425 cd08286 FDH_like_ADH2 formalde 56.6 1E+02 0.0022 25.7 8.9 97 39-165 164-264 (345)
426 PRK10537 voltage-gated potassi 56.0 68 0.0015 28.3 7.8 100 43-173 241-342 (393)
427 cd08263 Zn_ADH10 Alcohol dehyd 56.0 1.2E+02 0.0026 25.7 9.3 98 38-166 184-286 (367)
428 PRK06182 short chain dehydroge 55.9 1.1E+02 0.0023 24.7 10.7 76 42-129 3-84 (273)
429 TIGR00561 pntA NAD(P) transhyd 55.9 74 0.0016 29.2 8.2 99 41-164 163-281 (511)
430 PRK07370 enoyl-(acyl carrier p 55.8 1.1E+02 0.0023 24.6 11.7 77 41-128 5-96 (258)
431 PRK07576 short chain dehydroge 55.8 1.1E+02 0.0023 24.7 12.0 76 41-128 8-95 (264)
432 TIGR01202 bchC 2-desacetyl-2-h 55.8 46 0.00099 27.7 6.6 18 149-166 213-230 (308)
433 PRK09987 dTDP-4-dehydrorhamnos 55.4 1.2E+02 0.0026 25.1 10.7 62 44-128 2-63 (299)
434 PRK12744 short chain dehydroge 55.2 1.1E+02 0.0023 24.4 11.2 112 42-165 8-143 (257)
435 PRK06603 enoyl-(acyl carrier p 55.0 1.1E+02 0.0024 24.6 11.4 77 41-128 7-95 (260)
436 PLN02178 cinnamyl-alcohol dehy 53.9 60 0.0013 28.0 7.2 91 40-166 177-272 (375)
437 PRK06500 short chain dehydroge 53.8 1.1E+02 0.0023 24.0 9.1 75 42-128 6-89 (249)
438 COG4301 Uncharacterized conser 53.6 1.4E+02 0.0029 25.3 8.6 104 41-167 78-193 (321)
439 PRK06171 sorbitol-6-phosphate 53.6 97 0.0021 24.7 8.0 75 42-128 9-86 (266)
440 PRK09880 L-idonate 5-dehydroge 53.6 31 0.00067 29.1 5.2 94 40-166 168-265 (343)
441 PRK03562 glutathione-regulated 53.1 38 0.00082 31.7 6.1 99 43-172 401-503 (621)
442 cd08255 2-desacetyl-2-hydroxye 53.0 58 0.0012 26.1 6.6 36 39-88 95-132 (277)
443 COG2384 Predicted SAM-dependen 53.0 17 0.00038 29.6 3.3 38 39-89 14-51 (226)
444 PF06016 Reovirus_L2: Reovirus 52.9 23 0.00049 35.8 4.7 74 114-189 564-639 (1289)
445 PRK09489 rsmC 16S ribosomal RN 52.9 42 0.00092 28.9 6.0 56 118-185 75-130 (342)
446 cd08284 FDH_like_2 Glutathione 52.9 73 0.0016 26.5 7.4 96 39-166 165-265 (344)
447 PRK05884 short chain dehydroge 52.6 1.1E+02 0.0024 23.9 10.1 72 44-128 2-78 (223)
448 PRK08217 fabG 3-ketoacyl-(acyl 52.2 83 0.0018 24.6 7.3 76 41-128 4-91 (253)
449 cd08256 Zn_ADH2 Alcohol dehydr 52.2 1.4E+02 0.003 25.0 9.1 98 39-166 172-273 (350)
450 PRK08220 2,3-dihydroxybenzoate 52.2 1.1E+02 0.0025 23.9 12.2 75 42-128 8-85 (252)
451 cd08266 Zn_ADH_like1 Alcohol d 51.8 1.3E+02 0.0028 24.5 9.8 97 39-166 164-264 (342)
452 cd08282 PFDH_like Pseudomonas 51.5 59 0.0013 27.8 6.7 106 39-165 174-283 (375)
453 cd08297 CAD3 Cinnamyl alcohol 51.4 1.4E+02 0.003 24.7 9.5 96 39-166 163-264 (341)
454 PRK06128 oxidoreductase; Provi 51.4 1.4E+02 0.003 24.6 11.7 113 42-166 55-190 (300)
455 cd08235 iditol_2_DH_like L-idi 51.1 1.2E+02 0.0027 25.1 8.5 97 39-166 163-264 (343)
456 PRK08251 short chain dehydroge 50.7 78 0.0017 24.9 6.9 75 42-128 2-90 (248)
457 PRK05693 short chain dehydroge 50.7 1.3E+02 0.0028 24.2 11.1 74 44-129 3-82 (274)
458 PRK08415 enoyl-(acyl carrier p 50.6 1.4E+02 0.003 24.4 10.9 77 41-128 4-92 (274)
459 PF03492 Methyltransf_7: SAM d 50.6 15 0.00033 31.6 2.9 83 40-130 15-118 (334)
460 cd08274 MDR9 Medium chain dehy 49.2 1.1E+02 0.0023 25.5 7.9 94 39-165 175-271 (350)
461 PRK08267 short chain dehydroge 49.2 1.3E+02 0.0029 23.8 11.3 74 44-129 3-87 (260)
462 cd08243 quinone_oxidoreductase 49.0 1.4E+02 0.0031 24.1 10.6 93 39-165 140-236 (320)
463 PRK07985 oxidoreductase; Provi 48.6 1.5E+02 0.0033 24.4 10.9 113 41-165 48-183 (294)
464 PLN02240 UDP-glucose 4-epimera 48.6 1.6E+02 0.0035 24.6 12.5 72 42-128 5-90 (352)
465 PRK07067 sorbitol dehydrogenas 48.5 1.4E+02 0.0029 23.7 11.0 75 42-128 6-89 (257)
466 PRK12767 carbamoyl phosphate s 48.5 82 0.0018 26.2 7.0 71 43-126 2-76 (326)
467 PRK08213 gluconate 5-dehydroge 48.4 76 0.0016 25.2 6.6 76 41-128 11-98 (259)
468 PRK08339 short chain dehydroge 48.4 1.4E+02 0.0031 24.0 11.0 76 41-128 7-94 (263)
469 KOG2013 SMT3/SUMO-activating c 48.0 36 0.00078 31.1 4.8 36 41-88 11-46 (603)
470 PF07669 Eco57I: Eco57I restri 47.9 94 0.002 21.7 6.2 47 119-167 2-51 (106)
471 PRK09186 flagellin modificatio 47.6 1.2E+02 0.0025 23.9 7.6 76 41-128 3-92 (256)
472 cd08245 CAD Cinnamyl alcohol d 47.5 1.4E+02 0.0031 24.5 8.3 92 39-166 160-255 (330)
473 PRK06550 fabG 3-ketoacyl-(acyl 47.4 1.3E+02 0.0029 23.3 8.0 71 42-128 5-76 (235)
474 cd08253 zeta_crystallin Zeta-c 47.2 1.5E+02 0.0032 23.8 9.1 96 39-165 142-241 (325)
475 PRK06953 short chain dehydroge 46.2 1.4E+02 0.003 23.1 7.9 73 44-128 3-79 (222)
476 PLN02896 cinnamyl-alcohol dehy 46.1 1.8E+02 0.0039 24.5 9.9 72 41-129 9-89 (353)
477 cd08240 6_hydroxyhexanoate_dh_ 46.1 1.8E+02 0.0038 24.3 10.4 95 39-165 173-272 (350)
478 PRK12828 short chain dehydroge 45.9 90 0.0019 24.1 6.5 75 42-128 7-91 (239)
479 PRK05867 short chain dehydroge 45.7 1.5E+02 0.0032 23.4 10.6 76 41-128 8-95 (253)
480 cd08291 ETR_like_1 2-enoyl thi 45.4 1.7E+02 0.0038 24.1 9.2 96 41-166 142-241 (324)
481 cd08265 Zn_ADH3 Alcohol dehydr 45.3 1.6E+02 0.0034 25.2 8.5 100 38-166 200-306 (384)
482 PRK06949 short chain dehydroge 44.9 72 0.0016 25.2 5.9 76 41-128 8-95 (258)
483 cd08292 ETR_like_2 2-enoyl thi 44.8 1.6E+02 0.0034 24.1 8.1 94 39-166 137-237 (324)
484 PRK07102 short chain dehydroge 44.4 1.3E+02 0.0028 23.6 7.3 73 43-128 2-85 (243)
485 COG0863 DNA modification methy 44.0 1.4E+02 0.0029 24.5 7.6 90 96-191 18-123 (302)
486 cd05286 QOR2 Quinone oxidoredu 43.7 1.7E+02 0.0036 23.4 8.2 94 39-166 134-234 (320)
487 PF13561 adh_short_C2: Enoyl-( 43.7 44 0.00095 26.5 4.4 108 49-167 1-133 (241)
488 COG0451 WcaG Nucleoside-diphos 43.4 1.8E+02 0.0038 23.6 11.1 68 45-129 3-74 (314)
489 PRK05872 short chain dehydroge 43.4 1.8E+02 0.004 23.8 11.8 77 41-129 8-95 (296)
490 PRK07041 short chain dehydroge 43.0 1.6E+02 0.0034 22.8 7.9 65 51-128 5-78 (230)
491 PRK15181 Vi polysaccharide bio 42.7 2.1E+02 0.0045 24.2 9.4 71 41-128 14-99 (348)
492 PTZ00354 alcohol dehydrogenase 42.6 1.9E+02 0.004 23.6 9.0 96 38-166 137-239 (334)
493 PRK08993 2-deoxy-D-gluconate 3 42.2 1.7E+02 0.0037 23.1 9.9 76 41-128 9-94 (253)
494 PRK06172 short chain dehydroge 41.9 1.3E+02 0.0028 23.7 7.0 76 41-128 6-93 (253)
495 TIGR01181 dTDP_gluc_dehyt dTDP 41.6 1.9E+02 0.0041 23.4 10.4 66 51-128 7-82 (317)
496 PRK05717 oxidoreductase; Valid 40.8 1.8E+02 0.0039 23.0 10.8 76 41-128 9-93 (255)
497 COG1782 Predicted metal-depend 40.5 32 0.00068 31.7 3.3 39 147-185 395-433 (637)
498 cd08301 alcohol_DH_plants Plan 40.4 2.3E+02 0.0049 24.0 10.0 96 39-166 185-288 (369)
499 PRK07063 short chain dehydroge 40.3 1.9E+02 0.004 22.9 10.9 75 42-128 7-95 (260)
500 PRK12829 short chain dehydroge 39.7 91 0.002 24.7 5.8 76 41-128 10-95 (264)
No 1
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=8.4e-43 Score=277.01 Aligned_cols=186 Identities=75% Similarity=1.160 Sum_probs=173.1
Q ss_pred CCCCCCCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe
Q 029488 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (192)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (192)
|||+|+++.|-||++|++.|||.|++|||.++|+.|.+|+--.|++|||++||+|+++|++++... ++++.. ....
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~--~~~~~~--~~~k 76 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKP--LPSSGE--RDKK 76 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhcc--CCCcch--hhcc
Confidence 999999999999999999999999999999999999999999999999999999999999997521 222211 2236
Q ss_pred EEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC
Q 029488 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (192)
Q Consensus 81 V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg 160 (192)
|++||+++|.++++|.-+++||+...+...+.+++.+++.|+|+|||+|++.|.|++|++.+.++..++|..+..+||||
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCChHHHHHHHHccCCeeeEE
Q 029488 161 GKFIAKIFRGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 161 G~~v~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
|.||.|+|++.+...|...|+.+|++|.++
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~ 186 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCA 186 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeee
Confidence 999999999999999999999999998764
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-39 Score=257.35 Aligned_cols=174 Identities=42% Similarity=0.685 Sum_probs=167.7
Q ss_pred CCCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 029488 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (192)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gv 84 (192)
.+++.|+|++.+++++||+|+++||.||+++|.++++|++|+||||+||+|+++++++.+ +.+.|+|+
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~------------~~~~ivav 76 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG------------AGGKIVAV 76 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC------------CCCcEEEE
Confidence 568999999999999999999999999999999999999999999999999999999987 66779999
Q ss_pred eCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 85 DLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 85 D~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
|++|+.++++|.++++|+++.+...++.+.+++..+|+|+||++|+..|.+..||+.+..++..++..|..+|+|||.|+
T Consensus 77 Di~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 77 DILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHccCCeeeEE
Q 029488 165 AKIFRGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 165 ~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
+|+|.+++++.+++.++.+|++|+++
T Consensus 157 ~K~fqg~~~~~~l~~~~~~F~~v~~~ 182 (205)
T COG0293 157 AKVFQGEDFEDLLKALRRLFRKVKIF 182 (205)
T ss_pred EEEEeCCCHHHHHHHHHHhhceeEEe
Confidence 99999999999999999999999875
No 3
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-38 Score=244.74 Aligned_cols=173 Identities=30% Similarity=0.537 Sum_probs=167.7
Q ss_pred CCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEe
Q 029488 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (192)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD 85 (192)
|+.+|||.+.|+.+.||+|++|||.||+++|.+++|+.+|||+||+||+|++.+.++.. |.+.|.|||
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~------------p~g~v~gVD 101 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN------------PNGMVLGVD 101 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhC------------CCceEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999986 799999999
Q ss_pred CCCCCCCCCceEEec-ccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 86 LQPMAPIEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 86 ~~~~~~~~~v~~~~~-Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
+.+..+++|+.++++ |++++.+..++.+.+|+..+|+|+||+.++..|.+..||+.+..||..++..+...++|+|.|+
T Consensus 102 llh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 102 LLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred eeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999999999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHccCCeeeEE
Q 029488 165 AKIFRGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 165 ~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
||+|++++..++...|...|+.|+++
T Consensus 182 cK~w~g~e~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 182 CKLWDGSEEALLQRRLQAVFTNVKKV 207 (232)
T ss_pred EEEecCCchHHHHHHHHHHhhhcEee
Confidence 99999999999999999999999875
No 4
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=6.7e-33 Score=222.72 Aligned_cols=173 Identities=31% Similarity=0.489 Sum_probs=154.5
Q ss_pred CCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEe
Q 029488 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAID 85 (192)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD 85 (192)
|+++|+|+.+++..+|++|+++|+.++++++.+++++.+|||||||||.|+.+++++.+ +.+.|+|+|
T Consensus 16 ~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~------------~~~~V~aVD 83 (209)
T PRK11188 16 EHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG------------DKGRVIACD 83 (209)
T ss_pred HhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC------------CCceEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999975 568999999
Q ss_pred CCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 86 LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 86 ~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
++++.+.+++.++++|+++......+.+.+.+.++|+|+||++++..+.+..+......+...++..+.++|||||.|++
T Consensus 84 i~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 84 ILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred cccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99988888999999999998776667666777899999999988777766555554444567899999999999999999
Q ss_pred EecCCCChHHHHHHHHccCCeeeEE
Q 029488 166 KIFRGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 166 k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
++|.++++.++++.++.+|.+|+++
T Consensus 164 ~~~~~~~~~~~l~~l~~~f~~v~~~ 188 (209)
T PRK11188 164 KVFQGEGFDEYLREIRSLFTKVKVR 188 (209)
T ss_pred EEecCcCHHHHHHHHHhCceEEEEE
Confidence 9999999999999999999999875
No 5
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=99.97 E-value=9.1e-32 Score=237.64 Aligned_cols=177 Identities=40% Similarity=0.641 Sum_probs=165.2
Q ss_pred CCCC---CCCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCC
Q 029488 1 MGKA---SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (192)
Q Consensus 1 ~~~~---~~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~ 77 (192)
|||+ ++.|.|.||++|++.|||+|++|||.+|+.+|.++.++..||||||+||+|.+++++.+| .
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p------------v 68 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP------------V 68 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC------------C
Confidence 8984 779999999999999999999999999999999999999999999999999999999997 6
Q ss_pred CCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhc
Q 029488 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (192)
Q Consensus 78 ~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (192)
+..|+|||+-|+.+++|+..++.||+.......+...+.-.+.|+|++||+|++.+.|..+.+.+..|...++..|...|
T Consensus 69 ~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l 148 (780)
T KOG1098|consen 69 GSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFL 148 (780)
T ss_pred CceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78999999999999999988999999877666666655556789999999999999999999999999999999999999
Q ss_pred ccCCEEEEEecCCCChHHHHHHHHccCCeeeE
Q 029488 158 KEGGKFIAKIFRGKDTSLLYCQVNKMLVKTPV 189 (192)
Q Consensus 158 kpgG~~v~k~~~~~~~~~l~~~l~~~f~~v~~ 189 (192)
+.||+|+.++|+..++..|++.+..+|.+|++
T Consensus 149 ~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~ 180 (780)
T KOG1098|consen 149 AKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEA 180 (780)
T ss_pred HhcCccccccccCCcchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
No 6
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.97 E-value=9.4e-32 Score=210.86 Aligned_cols=158 Identities=40% Similarity=0.644 Sum_probs=135.3
Q ss_pred chhhHHhhHHHHHhHcCcccCC--CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEE
Q 029488 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV 98 (192)
Q Consensus 21 ~~~r~~~kl~~i~~~~~~l~~g--~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~ 98 (192)
|++|+++||.|++++|.+++++ .+||||||+||||+++++++.+ +.+.|+|+|+.++.+.+++..+
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~------------~~~~v~avDl~~~~~~~~~~~i 68 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG------------PAGRVVAVDLGPMDPLQNVSFI 68 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT------------TEEEEEEEESSSTGS-TTEEBT
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc------------ccceEEEEeccccccccceeee
Confidence 7899999999999999988765 8999999999999999999974 4689999999999888899999
Q ss_pred ecccCCchhHHHHHhhcCC--CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHH
Q 029488 99 QGDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (192)
Q Consensus 99 ~~Di~~~~~~~~~~~~~~~--~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l 176 (192)
++|+++..+...+.+.+++ ..+|+|+||++++..|.++.|++.+..++..++..|...|||||.|++|+|...+...+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 9999998887777776653 69999999999999999999999999999999999999999999999999998776799
Q ss_pred HHHHHccCCeeeEE
Q 029488 177 YCQVNKMLVKTPVY 190 (192)
Q Consensus 177 ~~~l~~~f~~v~~~ 190 (192)
++.++.+|++|+++
T Consensus 149 ~~~l~~~F~~v~~~ 162 (181)
T PF01728_consen 149 IYLLKRCFSKVKIV 162 (181)
T ss_dssp HHHHHHHHHHEEEE
T ss_pred HHHHHhCCeEEEEE
Confidence 99999999999875
No 7
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.95 E-value=6.6e-26 Score=178.87 Aligned_cols=169 Identities=36% Similarity=0.646 Sum_probs=146.4
Q ss_pred ChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 10 ~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
|.||+.+++++++.|+++++.++++++..+++|.+|||+|||||+++..++.+.. +.++|+|+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~------------~~~~v~~vDis~~ 68 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG------------GKGRVIAVDLQPM 68 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC------------CCceEEEEecccc
Confidence 5788999999999999999999999999999999999999999999999998874 4679999999997
Q ss_pred CCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 90 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 90 ~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
...+++.++++|+.+......+.+..++++||+|++|++++..|.+..++.....+...++..+.++|+|||.+++..+.
T Consensus 69 ~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 69 KPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 65578888999998876655566666777899999999877777777777666666678899999999999999998899
Q ss_pred CCChHHHHHHHHccCCeeeEE
Q 029488 170 GKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 170 ~~~~~~l~~~l~~~f~~v~~~ 190 (192)
..+..+++..++..|..++++
T Consensus 149 ~~~~~~~l~~l~~~~~~~~~~ 169 (188)
T TIGR00438 149 GEEIDEYLNELRKLFEKVKVT 169 (188)
T ss_pred CccHHHHHHHHHhhhceEEEe
Confidence 889889999988888877653
No 8
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.89 E-value=1.2e-23 Score=183.98 Aligned_cols=182 Identities=21% Similarity=0.350 Sum_probs=149.4
Q ss_pred CCCCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcc--cC----C-----------CeEEeEcCCCChHHHHHHHHhCCC
Q 029488 4 ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF--EG----V-----------KRVVDLCAAPGSWSQVLSRKLYLP 66 (192)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l--~~----g-----------~~vLDlG~GpG~~s~~l~~~~~~~ 66 (192)
.+|+|.+||. .++...|.+|+++|++++|..++++ +| | -.+-|+|+|||||+.|++++-.|+
T Consensus 214 rARtRaNPyE-tIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~ 292 (845)
T KOG3673|consen 214 RARTRANPYE-TIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWN 292 (845)
T ss_pred HHhhcCChHH-HHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhc
Confidence 3789999996 6999999999999999999988875 22 1 257899999999999999999998
Q ss_pred CC-------CCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhh----cCCCcccEEEeCCCCCCCCCc
Q 029488 67 AK-------LSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH----FDGCKADLVVCDGAPDVTGLH 135 (192)
Q Consensus 67 ~~-------~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~----~~~~~~DlV~~d~~~~~~g~~ 135 (192)
++ .++|+. ..+.++.......+.+|+ --.|||+++.++..+..+ .++.++++.++||.+++.|+.
T Consensus 293 AKGFGfTL~G~nDFK---LekF~aaS~e~FetfYG~-k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQe 368 (845)
T KOG3673|consen 293 AKGFGFTLAGKNDFK---LEKFTAASQEFFETFYGT-KDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQE 368 (845)
T ss_pred cccceeEeccCCccc---hhhhhhcCHHhhhccccc-cCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchh
Confidence 74 344442 334444332223344553 357899999888777766 356789999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC--hHHHHHHHHccCCeeeEE
Q 029488 136 DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 136 ~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~--~~~l~~~l~~~f~~v~~~ 190 (192)
|+|+..+.++.++++..|+.++||||.|+||+|+..+ .+.|+|+|+.||.+|.++
T Consensus 369 NiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~ 425 (845)
T KOG3673|consen 369 NIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLH 425 (845)
T ss_pred hHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999887 689999999999998765
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=7.5e-16 Score=125.73 Aligned_cols=115 Identities=23% Similarity=0.343 Sum_probs=74.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+|||||.++..++++.+ +.++|+|+|+++. ....++.++++|..+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~------------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVG------------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---------------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCC------------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--
Confidence 6789999999999999999998876 6789999999983 12348999999999853
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~ 185 (192)
+++++||.|++... .++..+. ..+++++.|+|||||.+++..|...+...+....+.+|.
T Consensus 112 ------~~d~sfD~v~~~fg-----lrn~~d~------~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~ 171 (233)
T PF01209_consen 112 ------FPDNSFDAVTCSFG-----LRNFPDR------ERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK 171 (233)
T ss_dssp ------S-TT-EEEEEEES------GGG-SSH------HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred ------CCCCceeEEEHHhh-----HHhhCCH------HHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence 46789999998653 4444322 357899999999999999877765554443344444454
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=2.9e-15 Score=122.14 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=83.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.+|.+|||+|||||-++..+++..+ .++|+|+|+|+.. ...+++++.+|..+..
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--
Confidence 3799999999999999999999984 7999999999831 1234889999998853
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~ 175 (192)
+++++||+|.+.. |.++..+. ..+|+++.|+|||||.+++..|.......
T Consensus 115 ------f~D~sFD~vt~~f-----glrnv~d~------~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 115 ------FPDNSFDAVTISF-----GLRNVTDI------DKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred ------CCCCccCEEEeee-----hhhcCCCH------HHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 6789999999865 44555433 57899999999999999998776554433
No 11
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=1.4e-14 Score=112.65 Aligned_cols=119 Identities=25% Similarity=0.272 Sum_probs=85.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~ 109 (192)
++.+|||+|||+|..+..++++. +..+|+++|+++.+ ..++++++..|..+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~-------------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG-------------PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS-------------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----
T ss_pred cCCeEEEecCChHHHHHHHHHhC-------------CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----
Confidence 57899999999999999999986 46689999999842 234578888998763
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCeeeE
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKTPV 189 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~v~~ 189 (192)
.++.+||+|+||++.+..+ ..........+..+.+.|||||.|++-.........+ ++..|..|++
T Consensus 94 -----~~~~~fD~Iv~NPP~~~~~------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~ 159 (170)
T PF05175_consen 94 -----LPDGKFDLIVSNPPFHAGG------DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEV 159 (170)
T ss_dssp -----CCTTCEEEEEE---SBTTS------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EE
T ss_pred -----ccccceeEEEEccchhccc------ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEE
Confidence 3457999999998754322 1122334577889999999999998855454555553 7888888887
Q ss_pred E
Q 029488 190 Y 190 (192)
Q Consensus 190 ~ 190 (192)
+
T Consensus 160 ~ 160 (170)
T PF05175_consen 160 V 160 (170)
T ss_dssp E
T ss_pred E
Confidence 5
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4.2e-14 Score=115.68 Aligned_cols=126 Identities=19% Similarity=0.270 Sum_probs=97.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~ 107 (192)
....+|||||||+|..+..++++.. ..+|+|||+++.. + -++++++++|+.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~-------------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE-------------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC-------------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-
Confidence 4478999999999999999999973 5899999999842 1 247899999998743
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCc-cccHHHHHH------HHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHH
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQ------LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~-~~~~~~~~~------l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l 180 (192)
......+||+|+||+++...+.. +.++..... .....++.|.++|||||.+.+ +++.++..+++..|
T Consensus 109 -----~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l 182 (248)
T COG4123 109 -----KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELL 182 (248)
T ss_pred -----hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHH
Confidence 34445579999999987655554 333222221 135678999999999999999 99999999999999
Q ss_pred Hcc-CC
Q 029488 181 NKM-LV 185 (192)
Q Consensus 181 ~~~-f~ 185 (192)
+.+ |.
T Consensus 183 ~~~~~~ 188 (248)
T COG4123 183 KSYNLE 188 (248)
T ss_pred HhcCCC
Confidence 883 44
No 13
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=6.7e-14 Score=124.01 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=92.2
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
+++.+|||+|||||+++..+++..+ +.+.|+|+|+++.. ...++.++.+|..+..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~------------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-- 314 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLK------------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-- 314 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--
Confidence 5788999999999999999999874 46899999999742 2346788889987632
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCcc--c--------cH-HHHHHHHHHHHHHHHHhcccCCEEEEEe---cCCCChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--M--------DE-FVQSQLILAGLTVVTHVLKEGGKFIAKI---FRGKDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~--~--------~~-~~~~~l~~~~l~~a~~~LkpgG~~v~k~---~~~~~~~ 174 (192)
..++ +.||.|++|+++...|... + +. .....++..++..+.++|||||.++..+ +..++..
T Consensus 315 ----~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~ 389 (444)
T PRK14902 315 ----EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEE 389 (444)
T ss_pred ----chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHH
Confidence 1123 5899999999766555321 1 11 1112345678999999999999999544 4445555
Q ss_pred HHHHHHHc--cCCeeeE
Q 029488 175 LLYCQVNK--MLVKTPV 189 (192)
Q Consensus 175 ~l~~~l~~--~f~~v~~ 189 (192)
.+.++++. .|+.+++
T Consensus 390 vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 390 VIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHhCCCcEEecc
Confidence 55666776 3665543
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=9.9e-14 Score=99.62 Aligned_cols=97 Identities=26% Similarity=0.327 Sum_probs=73.0
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEeccc-CCchh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDI-TNART 107 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di-~~~~~ 107 (192)
|+.+|||||||+|.++..++++. +..+|+|+|++|.. ..++++++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-------------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-------------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-------------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-
Confidence 68899999999999999999965 47899999999831 236899999999 2221
Q ss_pred HHHHHhhcCCCcccEEEeCC-CCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 108 AEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
....||+|++++ ..+ ..-+. .....+++.+.+.|+|||.|++..
T Consensus 67 --------~~~~~D~v~~~~~~~~-----~~~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 --------FLEPFDLVICSGFTLH-----FLLPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp --------TSSCEEEEEECSGSGG-----GCCHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------cCCCCCEEEECCCccc-----cccch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 235799999987 221 01111 223467888999999999999854
No 15
>PTZ00146 fibrillarin; Provisional
Probab=99.52 E-value=4.3e-13 Score=112.26 Aligned_cols=122 Identities=17% Similarity=0.133 Sum_probs=85.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----~----~~~~v~~~~~Di~~~~~~~ 109 (192)
++++++|||||||||.|+.++++.++ +.+.|+|||+++. . ..+|+.++.+|++.+..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG------------~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~-- 195 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG------------PEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK-- 195 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh--
Confidence 58999999999999999999999986 6789999999972 1 13689999999886421
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC-----CCChHHH----HHHH
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-----GKDTSLL----YCQV 180 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~-----~~~~~~l----~~~l 180 (192)
+. . ....+|+|++|.+. +++. ..++..+.++|||||+|++++-. ....+.+ +..|
T Consensus 196 -y~-~-~~~~vDvV~~Dva~-------pdq~------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 196 -YR-M-LVPMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred -hh-c-ccCCCCEEEEeCCC-------cchH------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 11 1 22479999999741 2222 23445688999999999985321 1112222 3556
Q ss_pred Hcc-CCeeeEE
Q 029488 181 NKM-LVKTPVY 190 (192)
Q Consensus 181 ~~~-f~~v~~~ 190 (192)
++. |+.++++
T Consensus 260 ~~~GF~~~e~v 270 (293)
T PTZ00146 260 KKEGLKPKEQL 270 (293)
T ss_pred HHcCCceEEEE
Confidence 665 8866654
No 16
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.49 E-value=6.6e-13 Score=110.24 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=86.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+|||||+++..+++.++ ..+.|+|+|+++.. ...++.+...|..+..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-- 135 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMK------------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-- 135 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcC------------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh--
Confidence 5789999999999999999999875 45799999999731 2346777777875421
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHH-----------HHHHHHHHHHHHHHhcccCCEEEEEecCCC---ChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV-----------QSQLILAGLTVVTHVLKEGGKFIAKIFRGK---DTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~-----------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~---~~~ 174 (192)
. ....||.|++|+++...|....+... ...++..+|..+.++|||||.++..+.... +..
T Consensus 136 ----~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~ 209 (264)
T TIGR00446 136 ----A--AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEA 209 (264)
T ss_pred ----h--hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHH
Confidence 1 12469999999988766643222111 123456789999999999999998765432 233
Q ss_pred HHHHHHHc
Q 029488 175 LLYCQVNK 182 (192)
Q Consensus 175 ~l~~~l~~ 182 (192)
-+.++++.
T Consensus 210 vv~~~l~~ 217 (264)
T TIGR00446 210 VVDYLLEK 217 (264)
T ss_pred HHHHHHHh
Confidence 44445554
No 17
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=5.5e-13 Score=117.81 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=89.8
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+|||||+.|..+++..+ +.++|+|+|+++.. ...++.+..+|.++..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~------------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-- 301 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK------------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-- 301 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh--
Confidence 5789999999999999999999875 56899999999831 2345777888887632
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccH----------HH-HHHHHHHHHHHHHHhcccCCEEEEEecCC---CChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE----------FV-QSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~----------~~-~~~l~~~~l~~a~~~LkpgG~~v~k~~~~---~~~~ 174 (192)
... .++||.|++|+++...|....+. .. ...++..+|..+.++|||||.++..++.. ++..
T Consensus 302 ----~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 302 ----EYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred ----hhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence 112 35799999999887776532111 11 12356778999999999999999887653 3444
Q ss_pred HHHHHHHc
Q 029488 175 LLYCQVNK 182 (192)
Q Consensus 175 ~l~~~l~~ 182 (192)
.+.+++..
T Consensus 377 vv~~fl~~ 384 (431)
T PRK14903 377 VVKRFVYE 384 (431)
T ss_pred HHHHHHHh
Confidence 55556654
No 18
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=3.5e-13 Score=119.13 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=91.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+|||||+++..+++..+ ..++|+|+|+++.. ...++.++.+|.++....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~------------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG------------DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC------------CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 5789999999999999999999875 46899999999731 235678888888764210
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCcc--cc--------HH-HHHHHHHHHHHHHHHhcccCCEEEEEecC---CCChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--MD--------EF-VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~--~~--------~~-~~~~l~~~~l~~a~~~LkpgG~~v~k~~~---~~~~~ 174 (192)
.....++||.|++|++++..|... ++ .. ....++..++..+.++|||||+++..++. .++..
T Consensus 319 ----~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~ 394 (434)
T PRK14901 319 ----KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEA 394 (434)
T ss_pred ----cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHH
Confidence 001235899999999876655421 11 11 11234578899999999999999876544 35566
Q ss_pred HHHHHHHcc
Q 029488 175 LLYCQVNKM 183 (192)
Q Consensus 175 ~l~~~l~~~ 183 (192)
.+.++++.+
T Consensus 395 ~v~~~l~~~ 403 (434)
T PRK14901 395 QIEQFLARH 403 (434)
T ss_pred HHHHHHHhC
Confidence 667777764
No 19
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=2.5e-13 Score=112.99 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=82.5
Q ss_pred HHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEE
Q 029488 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQV 98 (192)
Q Consensus 31 ~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~ 98 (192)
.+.+++. ++||++|||+|||.|+.+.++|++. +.+|+|+++|+.+ .++ ++++.
T Consensus 63 ~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y--------------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 63 LILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY--------------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred HHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc--------------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 3344444 5899999999999999999999997 4899999999853 234 67777
Q ss_pred ecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 99 ~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
..|..+.+ +.||-|+|-+.+...|..+.+ ..++.+.++|+|||.+++.+..
T Consensus 128 l~d~rd~~-----------e~fDrIvSvgmfEhvg~~~~~---------~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 128 LQDYRDFE-----------EPFDRIVSVGMFEHVGKENYD---------DFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred eccccccc-----------cccceeeehhhHHHhCcccHH---------HHHHHHHhhcCCCceEEEEEec
Confidence 78887742 359999999988877766554 4578899999999999887643
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=6.9e-13 Score=107.30 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=77.1
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++++++|||+|||+|.++..+++..+ +.++|+|+|+++.. ..++++++.+|+.+..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 109 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVG------------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP- 109 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-
Confidence 36789999999999999999999875 56899999999731 2357888889887632
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
+++++||+|+++...+. .... ..++..+.++|||||.+++......+
T Consensus 110 -------~~~~~fD~V~~~~~l~~-----~~~~------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 110 -------FDDNSFDYVTIGFGLRN-----VPDY------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred -------CCCCCccEEEEeccccc-----CCCH------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 34569999998764321 1111 25678899999999999886544333
No 21
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=8.4e-13 Score=116.52 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=88.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------C----CCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I----EGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------~----~~v~~~~~Di~~~~~~~ 109 (192)
++|.+|||+|||||+++..++++.+ .+.|+|+|+++... . .+++++.+|..+..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--- 306 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--- 306 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch---
Confidence 5789999999999999999999873 47999999998420 0 13567888987632
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCcc--------ccHHH---HHHHHHHHHHHHHHhcccCCEEEEEec---CCCChHH
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHD--------MDEFV---QSQLILAGLTVVTHVLKEGGKFIAKIF---RGKDTSL 175 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~--------~~~~~---~~~l~~~~l~~a~~~LkpgG~~v~k~~---~~~~~~~ 175 (192)
...++.+||.|++|+++...|... ..... ...++..++..+.++|||||.++..++ ..++...
T Consensus 307 ---~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 307 ---QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQ 383 (427)
T ss_pred ---hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHH
Confidence 123346899999999876555321 11111 123456789999999999999996654 5566666
Q ss_pred HHHHHHc
Q 029488 176 LYCQVNK 182 (192)
Q Consensus 176 l~~~l~~ 182 (192)
+.++++.
T Consensus 384 v~~~l~~ 390 (427)
T PRK10901 384 IKAFLAR 390 (427)
T ss_pred HHHHHHh
Confidence 6666665
No 22
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.45 E-value=6.3e-13 Score=115.34 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=84.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C---CCCceEEecccCCchh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P---IEGVIQVQGDITNART 107 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~---~~~v~~~~~Di~~~~~ 107 (192)
+.+|||||||+|.++..++++. |..+|+++|+++++ . ..++++..+|+...
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-------------P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-------------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 4699999999999999999997 47899999999742 1 12456777776542
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCee
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKT 187 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~v 187 (192)
.++.+||+|+||++++... . .. .......+..+.+.|||||.|++...+.-. +...+++.|..+
T Consensus 294 -------~~~~~fDlIlsNPPfh~~~-~-~~----~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~---y~~~L~~~fg~~ 357 (378)
T PRK15001 294 -------VEPFRFNAVLCNPPFHQQH-A-LT----DNVAWEMFHHARRCLKINGELYIVANRHLD---YFHKLKKIFGNC 357 (378)
T ss_pred -------CCCCCEEEEEECcCcccCc-c-CC----HHHHHHHHHHHHHhcccCCEEEEEEecCcC---HHHHHHHHcCCc
Confidence 2345899999999876421 1 11 122346788999999999999986533333 335666678777
Q ss_pred eEE
Q 029488 188 PVY 190 (192)
Q Consensus 188 ~~~ 190 (192)
+++
T Consensus 358 ~~v 360 (378)
T PRK15001 358 TTI 360 (378)
T ss_pred eEE
Confidence 654
No 23
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.45 E-value=8.9e-13 Score=117.30 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=91.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+||||||.|..+++.++ ..+.|+|+|+++.. .+.++.....|.++.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~------------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~--- 176 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMN------------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF--- 176 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh---
Confidence 6899999999999999999999986 46899999999741 245666667776653
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHH-----------HHHHHHHHHHHHHHHhcccCCEEEEEecC---CCChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF-----------VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~-----------~~~~l~~~~l~~a~~~LkpgG~~v~k~~~---~~~~~ 174 (192)
...++ ..||.|+.|++++..|....+.. ....++..+|..|.++|||||++|..++. .++..
T Consensus 177 ---~~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~ 252 (470)
T PRK11933 177 ---GAALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQA 252 (470)
T ss_pred ---hhhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHH
Confidence 12233 47999999999887775432211 12345678899999999999999887765 33444
Q ss_pred HHHHHHHcc
Q 029488 175 LLYCQVNKM 183 (192)
Q Consensus 175 ~l~~~l~~~ 183 (192)
-+.++++++
T Consensus 253 vV~~~L~~~ 261 (470)
T PRK11933 253 VCLWLKETY 261 (470)
T ss_pred HHHHHHHHC
Confidence 455566653
No 24
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=1.3e-12 Score=108.26 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=78.8
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------CCCCceEEecccCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITN 104 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------------~~~~v~~~~~Di~~ 104 (192)
++++.+|||+|||+|.++..++++.+ +.++|+|+|+++.. ..+++.++.+|+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~------------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVG------------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 36789999999999999999998865 46899999999731 12367888999877
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
.. +++++||+|++....+. ..+. ..++.++.++|||||.|++..+....
T Consensus 139 lp--------~~~~sfD~V~~~~~l~~-----~~d~------~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 139 LP--------FDDCYFDAITMGYGLRN-----VVDR------LKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CC--------CCCCCEeEEEEeccccc-----CCCH------HHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 43 45679999998765431 2111 35789999999999999998776543
No 25
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.8e-12 Score=115.04 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=89.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.+|.+|||+|||||+++.++++..+ ..+.|+|+|+++.. ...++.++.+|..+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQ------------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhC------------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 5789999999999999999999875 45799999999841 2346778888887631
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCcc--------ccH--HH-HHHHHHHHHHHHHHhcccCCEEEEEecCCC---ChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--------MDE--FV-QSQLILAGLTVVTHVLKEGGKFIAKIFRGK---DTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~--------~~~--~~-~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~---~~~ 174 (192)
++.+||.|++|+++...|... ... .. ...++..+|..+.++|||||.++..++... +..
T Consensus 315 -------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~ 387 (445)
T PRK14904 315 -------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENEL 387 (445)
T ss_pred -------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 345899999999877666421 111 11 123456789999999999999998876543 444
Q ss_pred HHHHHHHcc
Q 029488 175 LLYCQVNKM 183 (192)
Q Consensus 175 ~l~~~l~~~ 183 (192)
.+.++++.+
T Consensus 388 ~v~~~l~~~ 396 (445)
T PRK14904 388 QIEAFLQRH 396 (445)
T ss_pred HHHHHHHhC
Confidence 555666654
No 26
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.44 E-value=1.7e-12 Score=114.49 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=86.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~~ 107 (192)
++|.+|||+|||||+++..+++..+ .++|+|+|+++.. ... .+....+|..+...
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 5789999999999999999999873 5899999999842 112 12224566554221
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCcc--c------c--H-HHHHHHHHHHHHHHHHhcccCCEEEEEecCC---CCh
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHD--M------D--E-FVQSQLILAGLTVVTHVLKEGGKFIAKIFRG---KDT 173 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~--~------~--~-~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~---~~~ 173 (192)
..+..+||.|++|++++..|... + . . .....++..+|..+.++|||||.++..++.. ++.
T Consensus 304 ------~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene 377 (426)
T TIGR00563 304 ------WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS 377 (426)
T ss_pred ------cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH
Confidence 11345899999999887766421 1 1 1 1123456788999999999999999877654 455
Q ss_pred HHHHHHHHc
Q 029488 174 SLLYCQVNK 182 (192)
Q Consensus 174 ~~l~~~l~~ 182 (192)
..+.++++.
T Consensus 378 ~~v~~~l~~ 386 (426)
T TIGR00563 378 EQIKAFLQE 386 (426)
T ss_pred HHHHHHHHh
Confidence 555566665
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.41 E-value=4.5e-13 Score=106.80 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=89.0
Q ss_pred chhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCC
Q 029488 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEG 94 (192)
Q Consensus 21 ~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~------~~~~~ 94 (192)
-|+|.+..|.-- -. +.+..+|.|||||||+-+.+|+++. |...|+|+|.|+. ..+++
T Consensus 14 eRtRPa~dLla~---Vp-~~~~~~v~DLGCGpGnsTelL~~Rw-------------P~A~i~GiDsS~~Mla~Aa~rlp~ 76 (257)
T COG4106 14 ERTRPARDLLAR---VP-LERPRRVVDLGCGPGNSTELLARRW-------------PDAVITGIDSSPAMLAKAAQRLPD 76 (257)
T ss_pred hccCcHHHHHhh---CC-ccccceeeecCCCCCHHHHHHHHhC-------------CCCeEeeccCCHHHHHHHHHhCCC
Confidence 377777776531 11 1345699999999999999999999 5899999999984 24689
Q ss_pred ceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 95 v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
++|..+|+.+. .++...|++.+|..++ +-.+|. .+|......|.|||.+.+.+-+..
T Consensus 77 ~~f~~aDl~~w---------~p~~~~dllfaNAvlq----WlpdH~-------~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 77 ATFEEADLRTW---------KPEQPTDLLFANAVLQ----WLPDHP-------ELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred CceecccHhhc---------CCCCccchhhhhhhhh----hccccH-------HHHHHHHHhhCCCceEEEECCCcc
Confidence 99999999885 3677999999998653 445654 566777889999999999886543
No 28
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=4.9e-12 Score=102.87 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=83.7
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~ 109 (192)
+++|.+|||+|||||.++.++++..+ .+.|+|+|+++. ...+|+.++.+|+.++...
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-------------~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~- 135 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-------------EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERY- 135 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-------------CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchh-
Confidence 47899999999999999999999873 579999999983 1236888999999764211
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec------CCCC---hHHHHHHH
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF------RGKD---TSLLYCQV 180 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~------~~~~---~~~l~~~l 180 (192)
..++ .+||.|++|.+. .++ ...++..+.++|||||.+++.+. .... ....+..+
T Consensus 136 ---~~l~-~~~D~i~~d~~~-------p~~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l 198 (226)
T PRK04266 136 ---AHVV-EKVDVIYQDVAQ-------PNQ------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKL 198 (226)
T ss_pred ---hhcc-ccCCEEEECCCC-------hhH------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHH
Confidence 1233 369999998641 111 12457889999999999998432 2111 22344566
Q ss_pred Hcc-CCeeeEE
Q 029488 181 NKM-LVKTPVY 190 (192)
Q Consensus 181 ~~~-f~~v~~~ 190 (192)
+.. |+.+++.
T Consensus 199 ~~aGF~~i~~~ 209 (226)
T PRK04266 199 EEGGFEILEVV 209 (226)
T ss_pred HHcCCeEEEEE
Confidence 654 7766553
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.40 E-value=1.2e-12 Score=109.14 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=71.7
Q ss_pred HHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCce
Q 029488 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVI 96 (192)
Q Consensus 29 l~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~ 96 (192)
+..+.++.. ++||++|||||||.|+++.+++++.+ ++|+|+.+|+.+ .+ .+++
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--------------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~ 115 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--------------CHVTGITLSEEQAEYARERIREAGLEDRVE 115 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----------------EEEEEES-HHHHHHHHHHHHCSTSSSTEE
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--------------cEEEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 333444443 58999999999999999999999974 899999999742 23 3577
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+...|..+. + .+||.|+|-+.+...|..+. ...++.+.++|||||.+++..+.
T Consensus 116 v~~~D~~~~----------~-~~fD~IvSi~~~Ehvg~~~~---------~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 116 VRLQDYRDL----------P-GKFDRIVSIEMFEHVGRKNY---------PAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEES-GGG--------------S-SEEEEESEGGGTCGGGH---------HHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEeecccc----------C-CCCCEEEEEechhhcChhHH---------HHHHHHHHHhcCCCcEEEEEecc
Confidence 778887763 2 39999999887654443322 35678899999999999987553
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=1e-12 Score=99.97 Aligned_cols=100 Identities=21% Similarity=0.334 Sum_probs=76.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~ 108 (192)
+++.+|||+|||+|.++..+++..+ +..+|+|+|+++. ...+++++.++|+.+...
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~------------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN------------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST------------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC------------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-
Confidence 4678999999999999999996544 5789999999983 235689999999998431
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
.++ +.||+|++++.++. ... ...+++.+.+.||+||.+++..+.
T Consensus 69 -----~~~-~~~D~I~~~~~l~~-----~~~------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 69 -----ELE-EKFDIIISNGVLHH-----FPD------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----CSS-TTEEEEEEESTGGG-----TSH------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----ccC-CCeeEEEEcCchhh-----ccC------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 122 69999999876421 111 135678899999999999987665
No 31
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.38 E-value=6e-12 Score=107.02 Aligned_cols=87 Identities=32% Similarity=0.405 Sum_probs=70.4
Q ss_pred hCchhhHHhhHHHHHhHc-------CcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC
Q 029488 19 EGWRARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP 91 (192)
Q Consensus 19 ~~~~~r~~~kl~~i~~~~-------~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~ 91 (192)
.+=++|+++||.++.+.| ..+.+|+++|||||+|||||..++++. .+|+|||..++.+
T Consensus 182 ~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG---------------~~V~AVD~g~l~~ 246 (357)
T PRK11760 182 ADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRG---------------MFVTAVDNGPMAQ 246 (357)
T ss_pred CCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcC---------------CEEEEEechhcCH
Confidence 345799999999995555 456899999999999999999999883 5999999998763
Q ss_pred ----CCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCC
Q 029488 92 ----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 92 ----~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~ 128 (192)
.++|+...+|-..... +...+|+|+||+.
T Consensus 247 ~L~~~~~V~h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 247 SLMDTGQVEHLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred hhhCCCCEEEEeccCcccCC--------CCCCCCEEEEecc
Confidence 4688888887765321 1468999999985
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=1.7e-12 Score=106.93 Aligned_cols=97 Identities=26% Similarity=0.294 Sum_probs=74.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
.++.+|||+|||+|.++..++++. +.++|+|+|+++.. ...++.++.+|+.+. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-------------p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~---------~ 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-------------PGAVIEALDSSPEMVAAARERGVDARTGDVRDW---------K 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHhcCCcEEEcChhhC---------C
Confidence 567899999999999999999986 46899999999842 224688888887652 1
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+..+||+|+|+...+.. .+. ..++..+.++|||||.|++.+..
T Consensus 86 ~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 PKPDTDVVVSNAALQWV----PEH-------ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCCceEEEEehhhhhC----CCH-------HHHHHHHHHhCCCCcEEEEEcCC
Confidence 34689999998764321 121 35688899999999999986543
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=4.5e-12 Score=99.72 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=76.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~ 109 (192)
++++|||+|||+|.++..++... +.++|+|+|.++. ...++++++++|+.+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-------------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-------------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-------------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---
Confidence 38899999999999999998765 4689999999983 12457888999987631
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHc
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~ 182 (192)
...+||+|+|++. .+. ...+..+.++|||||.+++. +......++....+.
T Consensus 106 ------~~~~fD~I~s~~~------~~~---------~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 106 ------HEEQFDVITSRAL------ASL---------NVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred ------ccCCccEEEehhh------hCH---------HHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 2458999999751 111 23566778999999999984 555556666665444
No 34
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=6.1e-12 Score=102.53 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=93.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC---CCceEEecccCCch
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI---EGVIQVQGDITNAR 106 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~---~~v~~~~~Di~~~~ 106 (192)
+++++||+|||||-.+--+.+..+.... -...+|+..|++|.. ++ ..+.++.+|..+.+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~-------~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFG-------DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccC-------CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 5799999999999999998888752111 124899999999831 22 24888999998864
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCe
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVK 186 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~ 186 (192)
++++++|..++.+ |.+|.-|. ..++++|+|+|||||.|.|..|...+.+.+.++.+.++-.
T Consensus 173 --------Fdd~s~D~yTiaf-----GIRN~th~------~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 173 --------FDDDSFDAYTIAF-----GIRNVTHI------QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred --------CCCCcceeEEEec-----ceecCCCH------HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 6788999998854 45555543 4789999999999999999999988878888888887543
No 35
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=9e-12 Score=107.05 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=82.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------CC--CceEEecccCCchhHHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~~--~v~~~~~Di~~~~~~~~~ 111 (192)
..+|||+|||+|.++..++++. +..+|+++|+++..- .. ...++.+|....
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~-------------p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS-------------PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------
Confidence 4589999999999999999986 467999999997420 11 234556666541
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCeeeEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
. .+.||+|+||++++..... ........+..+.+.|||||.|++..-+...++. .+...|+.++++
T Consensus 258 ---~-~~~fDlIvsNPPFH~g~~~------~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~---~l~~~Fg~~~~l 323 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFHDGIQT------SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPD---LLDETFGSHEVL 323 (342)
T ss_pred ---c-CCCccEEEECCCccCCccc------cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHH---HHHHHcCCeEEE
Confidence 2 3589999999987632111 1123356789999999999999886555444555 555678887775
No 36
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.37 E-value=1.3e-12 Score=114.07 Aligned_cols=168 Identities=24% Similarity=0.250 Sum_probs=126.3
Q ss_pred HhCchhhHHhhHHHHHhHcCcc-cCCC--eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----
Q 029488 18 EEGWRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---- 90 (192)
Q Consensus 18 ~~~~~~r~~~kl~~i~~~~~~l-~~g~--~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---- 90 (192)
...+..++|+|+.||.+.|.+. .++. .-+.||-|||.|..-+..-...+ ..++. -.++..|.-++|-.
T Consensus 106 ~ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~-r~k~~----~~W~W~anTLNPY~E~n~ 180 (696)
T KOG3674|consen 106 IAENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSS-RGKNM----SYWKWGANTLNPYFENNS 180 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhc-cCCcc----ceeeeccCccCcccccch
Confidence 4456789999999999999876 4444 78999999999987665543211 11111 23566777777621
Q ss_pred -------------CCCCceE---EecccCCchhHHHHHhhc-CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 029488 91 -------------PIEGVIQ---VQGDITNARTAEVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 153 (192)
Q Consensus 91 -------------~~~~v~~---~~~Di~~~~~~~~~~~~~-~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a 153 (192)
.+++..| ..|||.+......+.+.. -.+.+|+|.+||+.++.|.+.-++.+...+..+.+..|
T Consensus 181 ~~~mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~A 260 (696)
T KOG3674|consen 181 CFDMIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVA 260 (696)
T ss_pred HHHHhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHH
Confidence 2334444 367887766665565532 23599999999999999999888888888998999999
Q ss_pred HHhcccCCEEEEEecCCC--ChHHHHHHHHccCCeeeEE
Q 029488 154 THVLKEGGKFIAKIFRGK--DTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 154 ~~~LkpgG~~v~k~~~~~--~~~~l~~~l~~~f~~v~~~ 190 (192)
++.|+.||.|++|+|.-. -...++++++++|++|++|
T Consensus 261 L~~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~f 299 (696)
T KOG3674|consen 261 LKLLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAF 299 (696)
T ss_pred HHHHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhcc
Confidence 999999999999998644 3678999999999999987
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.36 E-value=4.2e-12 Score=104.46 Aligned_cols=95 Identities=23% Similarity=0.325 Sum_probs=74.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCceEEecccCCchhHHHHHh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~------~~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.++.+|||+|||+|.++..+++.. +.++|+|+|+++. ...+++.+..+|+.+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-------------~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-------- 88 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-------------PAARITGIDSSPAMLAEARSRLPDCQFVEADIASW-------- 88 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc--------
Confidence 568899999999999999999886 3689999999973 1246788888988653
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+..+||+|+++..++.. .+. ..++..+.++|||||.|++.+
T Consensus 89 -~~~~~fD~v~~~~~l~~~----~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 89 -QPPQALDLIFANASLQWL----PDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCCccEEEEccChhhC----CCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 234599999999765422 121 357888999999999999864
No 38
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2e-11 Score=102.04 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=87.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+.+|||+|||.|-.+..+++.. |..+|+-+|++.++ ..++..+...|+...
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~-------------p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~----- 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKS-------------PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP----- 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhC-------------CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----
Confidence 4599999999999999999997 47899999999752 133434566676653
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCeeeEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
..+ +||+|+||++++. |.. ....+..+.+..|.+.|++||.|.+..-....+.. .|.+.|..|+++
T Consensus 221 ----v~~-kfd~IisNPPfh~-G~~-----v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~---~L~~~Fg~v~~l 286 (300)
T COG2813 221 ----VEG-KFDLIISNPPFHA-GKA-----VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEK---KLKELFGNVEVL 286 (300)
T ss_pred ----ccc-cccEEEeCCCccC-Ccc-----hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHH---HHHHhcCCEEEE
Confidence 233 9999999999873 322 22233457788999999999999886664444544 888899998875
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=1.6e-11 Score=100.19 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=86.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~ 109 (192)
.+.+|||+|||+|.++..+++.. +...|+|+|+++.. ...++.+..+|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-------------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----
Confidence 45699999999999999999886 36799999999731 234678888888652
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCc-ccc-HHH-------------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChH
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLH-DMD-EFV-------------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~-~~~-~~~-------------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~ 174 (192)
++.++||+|++|++....+.. ... ... ........+..+.++|+|||.+++.. ......
T Consensus 150 -----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~ 223 (251)
T TIGR03534 150 -----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGE 223 (251)
T ss_pred -----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHH
Confidence 234689999999875432211 010 000 01123467888999999999999854 333445
Q ss_pred HHHHHHHc-cCCeeeEE
Q 029488 175 LLYCQVNK-MLVKTPVY 190 (192)
Q Consensus 175 ~l~~~l~~-~f~~v~~~ 190 (192)
.+...+.+ -|..|+++
T Consensus 224 ~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 224 AVRALFEAAGFADVETR 240 (251)
T ss_pred HHHHHHHhCCCCceEEE
Confidence 55666655 47777654
No 40
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=1.3e-11 Score=106.00 Aligned_cols=96 Identities=25% Similarity=0.289 Sum_probs=74.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
+++.+|||+|||+|.++..++++. .++|+|+|+++.. .. ++++++.+|+.+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--------------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--------------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--------------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-
Confidence 568899999999999999999885 3799999999841 12 46889999997742
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+++++||+|++....+. ..+. ..++.++.++|||||.|++..+
T Consensus 182 -------~~~~~FD~V~s~~~~~h----~~d~-------~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------FEDGQFDLVWSMESGEH----MPDK-------RKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------CCCCCccEEEECCchhc----cCCH-------HHHHHHHHHHcCCCcEEEEEEe
Confidence 35679999999764321 1121 3578889999999999998665
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.35 E-value=4.6e-12 Score=101.18 Aligned_cols=121 Identities=9% Similarity=0.052 Sum_probs=80.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEeccc-CCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDI-TNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di-~~~~~ 107 (192)
+++.+|||+|||+|.++..+++.. +..+|+|+|+++.. ..+++.++++|+ ..
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-------------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--- 102 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-------------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV--- 102 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-------------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHH---
Confidence 367899999999999999999886 46799999999831 246788889988 32
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHc
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~ 182 (192)
+...+++..||.|+++.+..... ..+..........+..+.++|||||.|++.+........++..++.
T Consensus 103 ---l~~~~~~~~~D~V~~~~~~p~~~---~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 103 ---LLDMFPDGSLDRIYLNFPDPWPK---KRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA 171 (202)
T ss_pred ---HHHHcCccccceEEEECCCCCCC---ccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 22235567899999976421100 0000000112457888999999999999855333333344444443
No 42
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.34 E-value=4.8e-12 Score=91.56 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~~ 109 (192)
|.+|||+|||+|.++..+++.. ..+++|+|++|.. . ..++.++++|..+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---- 62 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--------------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDL---- 62 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--------------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHH----
T ss_pred CCEEEEcCcchHHHHHHHHHHC--------------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhc----
Confidence 5799999999999999999885 3799999999842 1 24688899998763
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+.++.++||+|++|++...... +......+....++.+.+.|||||.+++.+
T Consensus 63 --~~~~~~~~~D~Iv~npP~~~~~~---~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 63 --PEPLPDGKFDLIVTNPPYGPRSG---DKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --HHTCTTT-EEEEEE--STTSBTT-------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hhhccCceeEEEEECCCCccccc---cchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 23456789999999987642210 111111134567889999999999998854
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.34 E-value=2e-11 Score=96.00 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=82.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.++.+|||+|||+|.++..++++. +.++|+++|+++.. ...++++..+|...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~-------------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~---- 92 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQF-------------PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI---- 92 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh----
Confidence 578899999999999999999886 46899999999831 13467777777632
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHc-cCCee
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK-MLVKT 187 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~-~f~~v 187 (192)
.++ .+||+|++++... .. ...+..+.+.|||||.+++......+..++...+++ -|+.+
T Consensus 93 -----~~~-~~~D~v~~~~~~~-----~~---------~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 93 -----ELP-GKADAIFIGGSGG-----NL---------TAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred -----hcC-cCCCEEEECCCcc-----CH---------HHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 122 4799999976321 11 245677899999999998865555666777777765 36655
Q ss_pred eE
Q 029488 188 PV 189 (192)
Q Consensus 188 ~~ 189 (192)
++
T Consensus 153 ~~ 154 (187)
T PRK08287 153 DC 154 (187)
T ss_pred eE
Confidence 44
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.33 E-value=1.3e-11 Score=101.32 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++.+|||+|||+|.++..+++. ..+|+|+|+++.. ......++.+|+.+..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---------------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---------------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------
Confidence 5679999999999999988765 3699999999842 1223467788886632
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHH
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~ 179 (192)
+++++||+|+++.+.+. ..+ ...++..+.++|||||.+++.++...+..++...
T Consensus 99 ~~~~~fD~V~s~~~l~~----~~d-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~ 152 (251)
T PRK10258 99 LATATFDLAWSNLAVQW----CGN-------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152 (251)
T ss_pred CCCCcEEEEEECchhhh----cCC-------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence 34568999999875431 111 1357888999999999999988776555554443
No 45
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.2e-11 Score=104.15 Aligned_cols=127 Identities=24% Similarity=0.346 Sum_probs=90.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+|++|||.|..+++.+. ++...|+|+|+++.. ...++..+..|-....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~-----------~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~-- 221 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELME-----------NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA-- 221 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcC-----------CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc--
Confidence 6799999999999999999999985 123556999999831 2445566666665421
Q ss_pred HHHHhhcC-CCcccEEEeCCCCCCCCCcc--------cc--HHH-HHHHHHHHHHHHHHhcccCCEEEEEecC---CCCh
Q 029488 109 EVVIRHFD-GCKADLVVCDGAPDVTGLHD--------MD--EFV-QSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDT 173 (192)
Q Consensus 109 ~~~~~~~~-~~~~DlV~~d~~~~~~g~~~--------~~--~~~-~~~l~~~~l~~a~~~LkpgG~~v~k~~~---~~~~ 173 (192)
+..+ +..||.|+.|++++..|... .. ... ...++.++|..|.++|||||.++..++. .++.
T Consensus 222 ----~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 222 ----ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred ----ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 1122 23599999999988777532 11 111 2345788999999999999999987764 3456
Q ss_pred HHHHHHHHcc
Q 029488 174 SLLYCQVNKM 183 (192)
Q Consensus 174 ~~l~~~l~~~ 183 (192)
.-+.+++++.
T Consensus 298 ~vV~~~L~~~ 307 (355)
T COG0144 298 EVVERFLERH 307 (355)
T ss_pred HHHHHHHHhC
Confidence 6666777774
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=2.4e-11 Score=96.12 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=72.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++++.+|||+|||+|..+..++... +.++|+|+|.++.. ..+++++..+|+.+..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-------------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~- 108 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-------------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG- 108 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-------------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-
Confidence 4668999999999999999999875 47899999999731 2446888889887632
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
.+.+||+|+++... +. ...+..+.+.|||||.|++....
T Consensus 109 --------~~~~fDlV~~~~~~------~~---------~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 109 --------QEEKFDVVTSRAVA------SL---------SDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred --------CCCCccEEEEcccc------CH---------HHHHHHHHHhcCCCeEEEEEeCC
Confidence 14589999997411 11 34678889999999999986543
No 47
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=101.98 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=73.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~ 109 (192)
++++.+|||+|||+|..+..++... .++|+|+|+++.. ...++.+..+|+.+..
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--------------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~--- 112 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--------------GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD--- 112 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--------------CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC---
Confidence 4688999999999999999998764 4799999999731 1246888889987532
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+++++||+|++....... . ......+++.+.++|||||.|++..+
T Consensus 113 -----~~~~~FD~V~s~~~l~h~----~-----~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 -----FPENTFDMIYSRDAILHL----S-----YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred -----CCCCCeEEEEEhhhHHhC----C-----HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 456799999985432110 0 01124678999999999999998654
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.31 E-value=6.8e-12 Score=99.52 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=84.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~ 108 (192)
++..++||+|||+|.++..++++. |...|+|+|+++. ..+.|+.++++|+.+..
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-------------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-- 79 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-------------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-- 79 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-------------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH--
Confidence 356799999999999999999987 4789999999973 12458889999997631
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM 183 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~ 183 (192)
...+++..+|.|+++.+...... .+....-.....+..+.++|||||.|++.+-.......++..+...
T Consensus 80 ---~~~~~~~~~d~v~~~~pdpw~k~---~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 80 ---DKFFPDGSLSKVFLNFPDPWPKK---RHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred ---HhhCCCCceeEEEEECCCcCCCC---CccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 12345568999999864221110 0100001123578889999999999998664433455556666553
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.31 E-value=5.7e-11 Score=92.81 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=82.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~ 109 (192)
.++.+|||+|||+|.++..++++. .+|+++|+++.. .-.+++++.+|+.+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---- 78 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG---------------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---- 78 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc----
Confidence 346799999999999999999873 289999999842 012466778887652
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCC-CccccHHH---------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHH
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTG-LHDMDEFV---------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 179 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g-~~~~~~~~---------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~ 179 (192)
. ..+||+|+++++..... .....++. ........+..+.++|||||.+++......+...++..
T Consensus 79 -----~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~ 152 (179)
T TIGR00537 79 -----V-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDK 152 (179)
T ss_pred -----c-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHH
Confidence 1 24899999998653221 11111111 11234677899999999999999866655557777777
Q ss_pred HHcc
Q 029488 180 VNKM 183 (192)
Q Consensus 180 l~~~ 183 (192)
+++.
T Consensus 153 l~~~ 156 (179)
T TIGR00537 153 LDER 156 (179)
T ss_pred HHhC
Confidence 7664
No 50
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.30 E-value=3.9e-11 Score=87.10 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=70.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
+++++|||+|||+|.++..++++.+ .++|+|+|+++.. ..+++.++.+|..+...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-------------NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 5678999999999999999999874 5899999999731 23567777787764210
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.. ..+||.|++++... . ...++..+.+.|||||.|++.+
T Consensus 84 -----~~-~~~~D~v~~~~~~~--------~------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 -----DS-LPEPDRVFIGGSGG--------L------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred -----hh-cCCCCEEEECCcch--------h------HHHHHHHHHHHcCCCCEEEEEe
Confidence 11 24899999976321 1 1367889999999999999854
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.30 E-value=1.7e-11 Score=101.73 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=74.0
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
+++|.+|||+|||+|.++..++...+ +.++|+|+|+++.. ..+++++..+|+.+..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g------------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG------------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC------------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-
Confidence 46899999999999999988888765 56799999999731 2357788888886632
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+++++||+|+++...+.. .+. ..++..+.++|||||.|++.
T Consensus 142 -------~~~~~fD~Vi~~~v~~~~----~d~-------~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------VADNSVDVIISNCVINLS----PDK-------ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------CCCCceeEEEEcCcccCC----CCH-------HHHHHHHHHHcCCCcEEEEE
Confidence 345689999998654321 121 25688899999999999985
No 52
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.30 E-value=5.9e-12 Score=86.94 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=65.3
Q ss_pred EeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCceEEecccCCchhHHHHHhhcCC
Q 029488 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (192)
Q Consensus 46 LDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~~v~~~~~Di~~~~~~~~~~~~~~~ 117 (192)
||+|||+|..+..++++ + ..+|+++|+++.. ...++.+..+|.++.. +++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--------FPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--------S-T
T ss_pred CEecCcCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--------ccc
Confidence 89999999999999998 3 5899999999841 2245668899998863 457
Q ss_pred CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
++||+|++....+.. . ....+++++.|+|||||.+++
T Consensus 59 ~sfD~v~~~~~~~~~-----~------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHL-----E------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEESHGGGS-----S------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccceeec-----c------CHHHHHHHHHHHcCcCeEEeC
Confidence 899999998754322 1 124678999999999999985
No 53
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.9e-11 Score=96.47 Aligned_cols=117 Identities=24% Similarity=0.333 Sum_probs=91.5
Q ss_pred HHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------
Q 029488 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------ 90 (192)
Q Consensus 17 ~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------ 90 (192)
.+..|.+|+++||..+.+.|.+.-+|+.+||+|+.||||+.+++++. ...|+|+|+...+
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--------------Ak~VyavDVG~~Ql~~kLR 120 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--------------AKHVYAVDVGYGQLHWKLR 120 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--------------CcEEEEEEccCCccCHhHh
Confidence 46789999999999999999999999999999999999999999994 6899999998743
Q ss_pred CCCCceEE-ecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 91 PIEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 91 ~~~~v~~~-~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
..+++... ..|++.... +.+.+ ..|+++||.++ ++.. .+|..+..+++|+|-++..+
T Consensus 121 ~d~rV~~~E~tN~r~l~~-----~~~~~-~~d~~v~DvSF-----------ISL~---~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 121 NDPRVIVLERTNVRYLTP-----EDFTE-KPDLIVIDVSF-----------ISLK---LILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred cCCcEEEEecCChhhCCH-----HHccc-CCCeEEEEeeh-----------hhHH---HHHHHHHHhcCCCceEEEEe
Confidence 24566544 346665432 23444 89999999874 3332 35667778999999887754
No 54
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.29 E-value=5.6e-11 Score=95.65 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=81.0
Q ss_pred hHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCce
Q 029488 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVI 96 (192)
Q Consensus 24 r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------~~~~v~ 96 (192)
+.+..+.+...... ...+.+|||+|||+|.++..+++.. +..+|+++|+++.. ..+++.
T Consensus 18 ~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (240)
T TIGR02072 18 EMAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRF-------------PQAEFIALDISAGMLAQAKTKLSENVQ 83 (240)
T ss_pred HHHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhC-------------CCCcEEEEeChHHHHHHHHHhcCCCCe
Confidence 34444444433222 1234799999999999999999886 46789999999742 124678
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
++.+|+.+.. +++++||+|+++...+.. .+ ....+..+.++|||||.+++..+....
T Consensus 84 ~~~~d~~~~~--------~~~~~fD~vi~~~~l~~~----~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 84 FICGDAEKLP--------LEDSSFDLIVSNLALQWC----DD-------LSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred EEecchhhCC--------CCCCceeEEEEhhhhhhc----cC-------HHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 8888887642 245689999998754321 11 135788899999999999987765433
No 55
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.29 E-value=4.8e-11 Score=94.87 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=81.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~ 106 (192)
+.++.+|||+|||+|.++..++...+ +.++|+++|+++.. . .+++.++.+|..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~------------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~- 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG------------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI- 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-
Confidence 46889999999999999999988764 46799999999731 2 24677777877542
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM 183 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~ 183 (192)
.... ...||.|++++.. .. ....+..+.+.|||||.+++.....++...+...+++.
T Consensus 105 -----l~~~-~~~~D~V~~~~~~-----~~---------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 105 -----LFTI-NEKFDRIFIGGGS-----EK---------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENI 161 (198)
T ss_pred -----Hhhc-CCCCCEEEECCCc-----cc---------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHc
Confidence 1112 2489999986521 11 13567888999999999998666656667777777553
No 56
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=8.5e-11 Score=97.33 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=85.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.++.+|||+|||+|.++..++... +...|+|+|+++.. ...++.++.+|+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~-------------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--- 170 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKER-------------PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--- 170 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---
Confidence 457799999999999999999887 36899999999731 124688888888653
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCcc-c-cHHH-------------HHHHHHHHHHHHHHhcccCCEEEEEecCCCCh
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD-M-DEFV-------------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~-~-~~~~-------------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~ 173 (192)
.+..+||+|++|++....+... . .+.. ........+..+.++|||||.+++.+ .....
T Consensus 171 ------~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~ 243 (275)
T PRK09328 171 ------LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQG 243 (275)
T ss_pred ------CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHH
Confidence 1235899999998643221100 0 0110 12334567888999999999999854 22333
Q ss_pred HHHHHHHHc-cCCeeeE
Q 029488 174 SLLYCQVNK-MLVKTPV 189 (192)
Q Consensus 174 ~~l~~~l~~-~f~~v~~ 189 (192)
..+...+.. -|..|++
T Consensus 244 ~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 244 EAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHhCCCceeEE
Confidence 445555554 3666655
No 57
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.27 E-value=2.8e-11 Score=96.28 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=67.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.++.+|||+|||+|.++.+++++. .+|+|+|+|+.. ...++.+...|+.+..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g---------------~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-- 91 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANG---------------FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-- 91 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--
Confidence 356799999999999999999863 699999999831 2345677777776532
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+ +.+||+|+|...++.. ........+..+.++|||||.+++
T Consensus 92 ------~-~~~fD~I~~~~~~~~~---------~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 ------F-DGEYDFILSTVVLMFL---------EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ------c-CCCcCEEEEecchhhC---------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 3479999998654311 111224678889999999999654
No 58
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.25 E-value=5.8e-11 Score=97.98 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=82.4
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------CCCceEEecccCCchhHHHHHh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+.+|||+|||+|.++..+++..+ ..+|+|+|+++... ..+++++++|+.+.. ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-------------~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l-----~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-------------GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL-----PT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc-----ch
Confidence 45899999999999999998863 57999999998421 124678888886531 11
Q ss_pred hcCCCcccEEEeCCCCCCCCCc-ccc-HH------H-------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHH
Q 029488 114 HFDGCKADLVVCDGAPDVTGLH-DMD-EF------V-------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~-~~~-~~------~-------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~ 178 (192)
.. ...||+|++|++....+.. ... +. . -.......+..+.+.|||||.+++. +...+...+..
T Consensus 149 ~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~ 226 (251)
T TIGR03704 149 AL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVE 226 (251)
T ss_pred hc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHH
Confidence 12 2479999999875432211 000 00 0 0123457788899999999999984 44556677777
Q ss_pred HHHc
Q 029488 179 QVNK 182 (192)
Q Consensus 179 ~l~~ 182 (192)
.+++
T Consensus 227 ~l~~ 230 (251)
T TIGR03704 227 AFAR 230 (251)
T ss_pred HHHH
Confidence 7765
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=99.25 E-value=1.2e-10 Score=94.09 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------C--CCceEE
Q 029488 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------I--EGVIQV 98 (192)
Q Consensus 29 l~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~--~~v~~~ 98 (192)
+.+...... ++++.+|||+|||+|.++..++.. + ..+|+++|+++... . .++.++
T Consensus 25 l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~ 89 (223)
T PRK14967 25 LADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-------------AGSVTAVDISRRAVRSARLNALLAGVDVDVR 89 (223)
T ss_pred HHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHhCCeeEEE
Confidence 444333332 467889999999999999998875 2 35999999998321 1 135667
Q ss_pred ecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccc-c--H-------HHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDM-D--E-------FVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 99 ~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~-~--~-------~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.+|+.+. +++.+||+|++|++......... + . .........++..+.++|||||.+++...
T Consensus 90 ~~d~~~~---------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 90 RGDWARA---------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ECchhhh---------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7777542 24568999999975322111000 0 0 00112235678889999999999987443
Q ss_pred CCCChHHHHHHHHc
Q 029488 169 RGKDTSLLYCQVNK 182 (192)
Q Consensus 169 ~~~~~~~l~~~l~~ 182 (192)
...+...++..++.
T Consensus 161 ~~~~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELSGVERTLTRLSE 174 (223)
T ss_pred cccCHHHHHHHHHH
Confidence 33355666666654
No 60
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=2.2e-10 Score=97.80 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=69.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~~ 108 (192)
+|++|||+|||+|.++..++... ...|+|+|.++.. ...++.++.+|+.+..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g--------------~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG--------------AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC--
Confidence 57899999999999999999874 3579999998731 1236778888876532
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
. ...||+|+|.+..+. ..+ ....++.+.+.|||||.|++..
T Consensus 186 ------~-~~~FD~V~s~~vl~H----~~d-------p~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 ------A-LKAFDTVFSMGVLYH----RRS-------PLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ------C-cCCcCEEEECChhhc----cCC-------HHHHHHHHHHhcCCCcEEEEEE
Confidence 1 468999999765321 111 1356888999999999999864
No 61
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.23 E-value=6.8e-11 Score=95.14 Aligned_cols=93 Identities=22% Similarity=0.216 Sum_probs=70.1
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++++.+|||+|||+|.++..+++..+ +.+.|+++|+++.. ...+++++.+|..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~------------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG------------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-
Confidence 46889999999999999999999875 45789999999731 2457888899986531
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
....+||+|+++++... ....+.+.|||||++++.+-
T Consensus 142 -------~~~~~fD~Ii~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 142 -------EPLAPYDRIYVTAAGPK-----------------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred -------cccCCCCEEEEcCCccc-----------------ccHHHHHhcCcCcEEEEEEc
Confidence 12358999999865321 12345688999999998653
No 62
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=2.2e-10 Score=95.96 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=83.0
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCchhHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAEV 110 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~~~~~ 110 (192)
.+|||+|||+|.++..++... +..+|+|+|+++.. ... ++.++.+|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-------------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-------------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----
Confidence 699999999999999999886 36799999999842 122 488889998652
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCc----cccHHH----------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHH
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLH----DMDEFV----------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~----~~~~~~----------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l 176 (192)
+++.+||+|+||++....... ..-.+. -.......+..+.+.|+|||.+++.+.. .....+
T Consensus 178 ----~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~ 252 (284)
T TIGR00536 178 ----LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSL 252 (284)
T ss_pred ----CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHH
Confidence 233489999999764221100 000000 1124567788999999999999986543 333444
Q ss_pred HHHHHc--cCCeeeE
Q 029488 177 YCQVNK--MLVKTPV 189 (192)
Q Consensus 177 ~~~l~~--~f~~v~~ 189 (192)
..++.. -|..+++
T Consensus 253 ~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 253 KELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHhcCCCceeEE
Confidence 555552 3666655
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.22 E-value=1e-10 Score=98.10 Aligned_cols=118 Identities=24% Similarity=0.304 Sum_probs=80.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~~ 108 (192)
++.+|||+|||+|.++..++.+. +..+|+|+|+++.. .. .++.++.+|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~-------------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF-------------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---
Confidence 45799999999999999999886 46899999999742 12 3578888998642
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCc-ccc-HHH------------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLH-DMD-EFV------------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~-~~~-~~~------------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~ 174 (192)
+++.+||+|++|++....... ... +.. -.......+..+.+.|+|||.+++.+.. +..
T Consensus 185 ------~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~ 256 (284)
T TIGR03533 185 ------LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SME 256 (284)
T ss_pred ------cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHH
Confidence 234589999999864321110 000 000 1123466789999999999999986643 223
Q ss_pred HHHHHHHc
Q 029488 175 LLYCQVNK 182 (192)
Q Consensus 175 ~l~~~l~~ 182 (192)
.+...+..
T Consensus 257 ~v~~~~~~ 264 (284)
T TIGR03533 257 ALEEAYPD 264 (284)
T ss_pred HHHHHHHh
Confidence 44444443
No 64
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=2.7e-10 Score=99.71 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=87.0
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~ 108 (192)
++++.+|||+|||+|.++..++... +..+|+|+|+|+.. .-.+++++++|+.+...
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~-------------p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER-------------PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc-
Confidence 3466799999999999999998875 46899999999842 01257888999865321
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccc-cHHH-------------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM-DEFV-------------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~-~~~~-------------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~ 174 (192)
....+||+|+||++....+.... ++.. -.......+..+.+.|+|||.+++.+ ......
T Consensus 315 ------~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~~Q~e 387 (423)
T PRK14966 315 ------PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GFDQGA 387 (423)
T ss_pred ------ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-CccHHH
Confidence 01347999999986422221111 1000 01234567888889999999988744 334455
Q ss_pred HHHHHHHcc-CCeeeEE
Q 029488 175 LLYCQVNKM-LVKTPVY 190 (192)
Q Consensus 175 ~l~~~l~~~-f~~v~~~ 190 (192)
.+...+... |..|+++
T Consensus 388 ~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 388 AVRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHHCCCcEEEEE
Confidence 666666654 7766653
No 65
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.22 E-value=2.9e-10 Score=96.63 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=72.2
Q ss_pred HHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CC
Q 029488 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI 92 (192)
Q Consensus 25 ~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~ 92 (192)
+.+|...+...... .+|++|||+|||+|.++..++... ...|+|+|.++.. ..
T Consensus 106 s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g--------------~~~v~GiDpS~~ml~q~~~~~~~~~~~ 170 (314)
T TIGR00452 106 SDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG--------------AKSLVGIDPTVLFLCQFEAVRKLLDND 170 (314)
T ss_pred HHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHHhccC
Confidence 44444434443332 457899999999999998888763 3589999999831 11
Q ss_pred CCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 93 ~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.++.+...++.+.. ...+||+|+|.+.... ..+. ...+..+.++|||||.|++.+
T Consensus 171 ~~v~~~~~~ie~lp---------~~~~FD~V~s~gvL~H----~~dp-------~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 171 KRAILEPLGIEQLH---------ELYAFDTVFSMGVLYH----RKSP-------LEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CCeEEEECCHHHCC---------CCCCcCEEEEcchhhc----cCCH-------HHHHHHHHHhcCCCCEEEEEE
Confidence 34555666654421 1248999999875321 1111 356889999999999999864
No 66
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=1.7e-10 Score=96.97 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=79.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
.++++|||+|||+|.++..++.. + ..+|+|+|+++.. .. .++.+..+|...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-------------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-------------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---
Confidence 57899999999999999888765 2 4699999999842 11 123333333211
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCee
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKT 187 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~v 187 (192)
..+.+||+|+++... + ....++..+.++|||||+|++.-+...+...+...++..|+.+
T Consensus 221 -------~~~~~fDlVvan~~~--------~------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 221 -------PIEGKADVIVANILA--------E------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred -------ccCCCceEEEEecCH--------H------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCcee
Confidence 124589999998531 1 1135677889999999999998776667778888888778766
Q ss_pred eE
Q 029488 188 PV 189 (192)
Q Consensus 188 ~~ 189 (192)
++
T Consensus 280 ~~ 281 (288)
T TIGR00406 280 EI 281 (288)
T ss_pred eE
Confidence 64
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=7.7e-11 Score=94.84 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=69.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++++++|||+|||+|..+..+++..+ +.++|+++|+++.. ...+++++.+|.....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~------------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~- 140 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG------------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY- 140 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 36899999999999999999999875 46899999999731 2457889999986532
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+..+||.|+++.... . ......+.|||||.|++-+
T Consensus 141 -------~~~~~fD~I~~~~~~~-----~------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 141 -------EENAPYDRIYVTAAGP-----D------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------CcCCCcCEEEECCCcc-----c------------chHHHHHhhCCCcEEEEEE
Confidence 1346899999986421 0 1123456899999998854
No 68
>PRK08317 hypothetical protein; Provisional
Probab=99.22 E-value=1.2e-10 Score=93.58 Aligned_cols=98 Identities=24% Similarity=0.271 Sum_probs=74.1
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~ 108 (192)
++++.+|||+|||+|.++..+++..+ +.++|+|+|+++.. ..+++.+..+|+.+..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~------------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 82 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVG------------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-- 82 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC------------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--
Confidence 36789999999999999999999874 46899999999741 1246778888887632
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+++..||+|+++....... + ...++..+.++|||||.+++..
T Consensus 83 ------~~~~~~D~v~~~~~~~~~~----~-------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 ------FPDGSFDAVRSDRVLQHLE----D-------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ------CCCCCceEEEEechhhccC----C-------HHHHHHHHHHHhcCCcEEEEEe
Confidence 3456899999986533211 1 1356788999999999998754
No 69
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.21 E-value=2.9e-10 Score=97.51 Aligned_cols=119 Identities=19% Similarity=0.161 Sum_probs=83.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCceEEecccCCchhHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~~v~~~~~Di~~~~~~~~ 110 (192)
-+++.+|||+|||+|.++..+++..+ ..+|+++|+++.. ...++.++.+|+.+..
T Consensus 111 ~~~~~~VLDLGcGtG~~~l~La~~~~-------------~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp---- 173 (340)
T PLN02490 111 SDRNLKVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP---- 173 (340)
T ss_pred CCCCCEEEEEecCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC----
Confidence 35788999999999999999988763 5799999998731 1346778888886632
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC----------------CCChH
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----------------GKDTS 174 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~----------------~~~~~ 174 (192)
++++.||+|++....+.. .+. ..+++++.++|||||.+++.... ....+
T Consensus 174 ----~~~~sFDvVIs~~~L~~~----~d~-------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~e 238 (340)
T PLN02490 174 ----FPTDYADRYVSAGSIEYW----PDP-------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEE 238 (340)
T ss_pred ----CCCCceeEEEEcChhhhC----CCH-------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHH
Confidence 345689999997654321 111 24688999999999999774211 11345
Q ss_pred HHHHHHHcc-CCeeeE
Q 029488 175 LLYCQVNKM-LVKTPV 189 (192)
Q Consensus 175 ~l~~~l~~~-f~~v~~ 189 (192)
++...++.. |+.|++
T Consensus 239 El~~lL~~aGF~~V~i 254 (340)
T PLN02490 239 EYIEWFTKAGFKDVKL 254 (340)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 666666665 776654
No 70
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.21 E-value=2.5e-10 Score=89.50 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=89.0
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++||++++|+|||+|+.+..++ +.+ |.++|+|+|.++.. ..+|++.+.||..+.-
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~------------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L- 97 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAG------------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL- 97 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhC------------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh-
Confidence 3789999999999999999999 555 79999999998742 3578888899886631
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc-C-C
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM-L-V 185 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~-f-~ 185 (192)
..+ ..+|.|+..++- +. ..+++.+...|||||.+|+-.-..++...++..+++. | +
T Consensus 98 -----~~~--~~~daiFIGGg~------~i---------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~e 155 (187)
T COG2242 98 -----PDL--PSPDAIFIGGGG------NI---------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGRE 155 (187)
T ss_pred -----cCC--CCCCEEEECCCC------CH---------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCce
Confidence 112 279999988751 12 2567889999999999999887778877777777775 4 4
Q ss_pred eeeEE
Q 029488 186 KTPVY 190 (192)
Q Consensus 186 ~v~~~ 190 (192)
-+++.
T Consensus 156 i~~v~ 160 (187)
T COG2242 156 IVQVQ 160 (187)
T ss_pred EEEEE
Confidence 44443
No 71
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=9.9e-11 Score=96.46 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=71.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~ 107 (192)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.. . .++++++++|+.+..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---------------~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~- 106 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---------------HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA- 106 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-
Confidence 457899999999999999999873 699999999731 1 246788888887632
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
. ..+++||+|++....+.. .+ ...++..+.++|||||.+++..+.
T Consensus 107 -----~-~~~~~fD~V~~~~vl~~~----~~-------~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 107 -----Q-HLETPVDLILFHAVLEWV----AD-------PKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred -----h-hcCCCCCEEEehhHHHhh----CC-------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence 1 234689999997643211 01 135688899999999999875544
No 72
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.20 E-value=1.9e-10 Score=93.85 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=72.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~ 107 (192)
.++.+|||+|||+|.++..++++.. .+.++|+|+|+++.. . ..++.++.+|+.+..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~-----------~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN-----------QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE- 119 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC-----------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence 5788999999999999999998752 147899999999731 1 235788889987642
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
...+|+|++....+.. . ......++..+.++|||||.|++..
T Consensus 120 ---------~~~~d~v~~~~~l~~~-----~----~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 ---------IKNASMVILNFTLQFL-----P----PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ---------CCCCCEEeeecchhhC-----C----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2368999987654321 1 1112367889999999999999864
No 73
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=1e-10 Score=97.27 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=73.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++.+|||+|||+|.++..+++..+.. ....|+|+|+++.. ..+++.+..+|..+..
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~----------~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI----------TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc----------cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-------
Confidence 356789999999999999999876410 12489999999842 2467888899887642
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHH
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l 176 (192)
+++++||+|++...+. .+.++.++|||||.|++.+......-++
T Consensus 147 -~~~~sfD~I~~~~~~~------------------~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 147 -FADQSLDAIIRIYAPC------------------KAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred -CcCCceeEEEEecCCC------------------CHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 3467999999865321 1346789999999999866555444343
No 74
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.20 E-value=1.2e-10 Score=101.59 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=69.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------CC--CceEEecccCCchhHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IE--GVIQVQGDITNARTAEV 110 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------~~--~v~~~~~Di~~~~~~~~ 110 (192)
+++|.+|||+|||+|+++..+++.. .++|+|+|+++... .. ++++...|..+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--------------g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~------ 224 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--------------GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD------ 224 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--------------CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh------
Confidence 3689999999999999999999875 37999999998421 11 34555556543
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+ +++||.|++...+...+..+ ....+..+.++|||||.+++..+
T Consensus 225 ----l-~~~fD~Ivs~~~~ehvg~~~---------~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 ----L-NGQFDRIVSVGMFEHVGPKN---------YRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred ----c-CCCCCEEEEeCchhhCChHH---------HHHHHHHHHHHcCCCcEEEEEEc
Confidence 1 35899999976544333211 13567889999999999998654
No 75
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=1.4e-10 Score=95.26 Aligned_cols=99 Identities=23% Similarity=0.211 Sum_probs=71.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~ 106 (192)
+.++.+|||+|||+|..+..+++... .+.++|+|+|+++.. . ..+++++.+|+.+.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~-----------~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~- 121 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIH-----------HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI- 121 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcC-----------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-
Confidence 46789999999999999999887532 157899999999831 1 23688888998763
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+...+|+|++....+.. + ......++..+.+.|||||.|++..
T Consensus 122 ---------~~~~~D~vv~~~~l~~l-----~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 122 ---------AIENASMVVLNFTLQFL-----E----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ---------CCCCCCEEehhhHHHhC-----C----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 22368999987543211 1 1112467889999999999998854
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=99.19 E-value=7e-10 Score=86.44 Aligned_cols=119 Identities=20% Similarity=0.277 Sum_probs=81.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC--ceEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~--v~~~~~Di~~~~ 106 (192)
.++.+|||+|||+|.++..++.+ + .+|+|+|+++.. ...+ +.+..+|..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G--------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c--------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 57889999999999999999887 3 699999999732 1122 67778887552
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCcccc-----HHH------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChHH
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD-----EFV------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~-----~~~------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~ 175 (192)
+.+..||+|+++++....+ .... +.. ........++.+.++|||||.+++.+........
T Consensus 86 --------~~~~~~d~vi~n~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~ 156 (188)
T PRK14968 86 --------FRGDKFDVILFNPPYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDE 156 (188)
T ss_pred --------ccccCceEEEECCCcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHH
Confidence 2334899999997643211 0000 000 0122356788999999999999887666556667
Q ss_pred HHHHHHcc
Q 029488 176 LYCQVNKM 183 (192)
Q Consensus 176 l~~~l~~~ 183 (192)
+...+...
T Consensus 157 l~~~~~~~ 164 (188)
T PRK14968 157 VLEYLEKL 164 (188)
T ss_pred HHHHHHHC
Confidence 77777654
No 77
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.19 E-value=5e-10 Score=95.69 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=79.1
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
.++|++|||.|||+|+++..++.. ...|+|+|+++.. ..+++.+..+|.++..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---------------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---------------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---------------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 468999999999999999876654 3789999999831 2345677888988743
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHH
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l 176 (192)
.++..||.|++|++.......... ....+...++..+.++|||||++++.+-...+..++
T Consensus 244 -------~~~~~~D~Iv~dPPyg~~~~~~~~--~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 244 -------LSSESVDAIATDPPYGRSTTAAGD--GLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred -------cccCCCCEEEECCCCcCcccccCC--chHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 224689999999875321110001 122345678999999999999999866554454443
No 78
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.19 E-value=1.1e-10 Score=92.73 Aligned_cols=94 Identities=17% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------CCC--ceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEG--VIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~~~--v~~~~~Di~~~~~~~~ 110 (192)
++.+|||+|||+|.++.+++++. .+|+|+|+++... ..+ +.....|+....
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g---------------~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---- 90 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG---------------YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---- 90 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC---------------CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----
Confidence 45699999999999999999862 6999999998321 112 444555654321
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
++ .+||+|++...++.. + .......+..+.++|||||.+++..
T Consensus 91 ----~~-~~fD~I~~~~~~~~~-----~----~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 91 ----LN-EDYDFIFSTVVFMFL-----Q----AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ----cc-CCCCEEEEecccccC-----C----HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 23 479999998754321 1 1122467888999999999966544
No 79
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.19 E-value=1.6e-10 Score=103.06 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=73.8
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCceEEecccCCchhH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~-~~~v~~~~~Di~~~~~~ 108 (192)
++++.+|||+|||+|.++..++... .++|+|+|+++.. . ..++++..+|+.+..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~--------------~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF--------------DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc--------------CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 4678899999999999999998875 3799999999631 1 136788899987642
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+++++||+|+|....... .+. ..++..+.++|||||.+++..+
T Consensus 328 ------~~~~~fD~I~s~~~l~h~----~d~-------~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 328 ------YPDNSFDVIYSRDTILHI----QDK-------PALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ------CCCCCEEEEEECCccccc----CCH-------HHHHHHHHHHcCCCeEEEEEEe
Confidence 345689999997654221 121 3578899999999999998755
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=2.8e-10 Score=90.19 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=75.2
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++++.+|||+|||+|.++..+++.. +.++|+|+|+++.. ..++++++.+|+.+.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~-------------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-- 102 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC-------------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-- 102 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH--
Confidence 3678999999999999999998775 46899999999831 235678888887541
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHc
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~ 182 (192)
+ ..+. ..+|.+..++.. . ...++..+.+.|+|||.|++.....+....+...++.
T Consensus 103 ---~-~~~~-~~~d~v~~~~~~------~---------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 103 ---L-AQLA-PAPDRVCIEGGR------P---------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ 157 (196)
T ss_pred ---H-hhCC-CCCCEEEEECCc------C---------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence 1 1122 245777765320 1 1356788899999999999977654444444445443
No 81
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.18 E-value=1.4e-10 Score=97.32 Aligned_cols=126 Identities=23% Similarity=0.286 Sum_probs=90.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
++|.+|||+||||||.+..+++.+. ..+.|+|+|+++.. ...++.....|.+...
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~------------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~-- 149 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMG------------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD-- 149 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTT------------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--
T ss_pred cccccccccccCCCCceeeeeeccc------------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--
Confidence 5789999999999999999999986 57999999999731 2345655666665532
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCcc--cc--------HH-HHHHHHHHHHHHHHHhc----ccCCEEEEEec---CC
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD--MD--------EF-VQSQLILAGLTVVTHVL----KEGGKFIAKIF---RG 170 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~--~~--------~~-~~~~l~~~~l~~a~~~L----kpgG~~v~k~~---~~ 170 (192)
.......||.|+.|++++..|... ++ .. ....++..+|..|.+.+ ||||++|..+. ..
T Consensus 150 ----~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 150 ----PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp ----HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred ----ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 122344799999999887766422 11 11 12345678899999999 99999998775 34
Q ss_pred CChHHHHHHHHcc
Q 029488 171 KDTSLLYCQVNKM 183 (192)
Q Consensus 171 ~~~~~l~~~l~~~ 183 (192)
++..-+.++++.+
T Consensus 226 ENE~vV~~fl~~~ 238 (283)
T PF01189_consen 226 ENEEVVEKFLKRH 238 (283)
T ss_dssp GTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 5555555566664
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.18 E-value=2e-10 Score=99.73 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=78.2
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~ 109 (192)
.+..+||||||+|.++..+|.+. |...++|+|+++. ..+.|+.++++|+...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-------------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l---- 184 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-------------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL---- 184 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-------------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh----
Confidence 35699999999999999999997 4789999999962 2357889999998652
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
.+.++++++|.|.+..+..+.. ..| + .-.....+..+.++|||||.+.+.+=.
T Consensus 185 --l~~~~~~s~D~I~lnFPdPW~K---krH-R-Rlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 --LELLPSNSVEKIFVHFPVPWDK---KPH-R-RVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred --hhhCCCCceeEEEEeCCCCccc---cch-h-hccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 2346778999999986532111 011 1 111356789999999999999997633
No 83
>PRK06922 hypothetical protein; Provisional
Probab=99.16 E-value=1.7e-10 Score=105.34 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C--CCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P--IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~--~~~v~~~~~Di~~~~~~~~ 110 (192)
++.+|||+|||+|.++..+++.. +..+|+|+|+++.. . -.++.++.+|+.+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-------------P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL----- 479 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-------------EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL----- 479 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-----
Confidence 67899999999999999999886 47899999999841 0 12456677887653
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccc--cHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDM--DEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~--~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+..+++++||+|+++...+....+-. ...-.......+++.+.++|||||.+++..
T Consensus 480 -p~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 480 -SSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -ccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 12345678999998764321100000 000001223567889999999999999864
No 84
>PRK04457 spermidine synthase; Provisional
Probab=99.15 E-value=7.8e-10 Score=91.81 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=86.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~ 107 (192)
.++.+|||||||.|.++.+++... |..+|+++|++|.. . .+++.++.+|..+.-
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-------------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l- 130 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-------------PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI- 130 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-------------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH-
Confidence 457899999999999999999887 47899999999831 1 257888889886531
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC-CChHHHHHHHHccCCe
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQVNKMLVK 186 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~-~~~~~l~~~l~~~f~~ 186 (192)
... ..+||+|++|.- +..+. ..+. .....++.+.+.|+|||.+++-++.. ......+..++..|..
T Consensus 131 -----~~~-~~~yD~I~~D~~-~~~~~--~~~l----~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 131 -----AVH-RHSTDVILVDGF-DGEGI--IDAL----CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred -----HhC-CCCCCEEEEeCC-CCCCC--cccc----CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 122 258999999952 11111 1111 12467888999999999999976643 3356778888888973
No 85
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.15 E-value=5e-10 Score=96.86 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=92.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
+||.||||+||+|||.+.++|..+. ..+.|+|.|.+... ...|....+.|-....
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMk------------n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~-- 305 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMK------------NTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP-- 305 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHc------------CCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc--
Confidence 5799999999999999999999987 67999999988631 2345555566665321
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCcc----------ccHHH-HHHHHHHHHHHHHHhcccCCEEEEEecC---CCChH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD----------MDEFV-QSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTS 174 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~----------~~~~~-~~~l~~~~l~~a~~~LkpgG~~v~k~~~---~~~~~ 174 (192)
..-+++ +||-|+.|++++..|.-. ..... .-+++.++|..|..++++||++|..+.. .++..
T Consensus 306 ---~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 306 ---EKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ---ccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 012455 999999999887754322 11111 1356788999999999999999987764 45666
Q ss_pred HHHHHHHcc
Q 029488 175 LLYCQVNKM 183 (192)
Q Consensus 175 ~l~~~l~~~ 183 (192)
.+-|+|+++
T Consensus 382 vV~yaL~K~ 390 (460)
T KOG1122|consen 382 VVDYALKKR 390 (460)
T ss_pred HHHHHHHhC
Confidence 777788884
No 86
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=2.9e-10 Score=96.40 Aligned_cols=105 Identities=22% Similarity=0.327 Sum_probs=74.2
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchhHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~~~~ 110 (192)
.+|||+|||+|.++..++... +..+|+|+|+++.. .. .++.++.+|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-------------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-------------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----
Confidence 689999999999999999886 46899999999842 12 3578888887542
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCc-ccc-HH------------HHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLH-DMD-EF------------VQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~-~~~-~~------------~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+++.+||+|+||++....... ... +. .-.......+..+.+.|+|||.+++.+..
T Consensus 197 ----l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 197 ----LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ----CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 234589999999764221110 000 00 01234467789999999999999986543
No 87
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.14 E-value=5.6e-10 Score=100.60 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=82.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~~ 108 (192)
++.+|||+|||+|.++..++... +..+|+|+|+++.. .. .++.++++|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-------------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-------------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-------------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---
Confidence 35689999999999999999886 46899999999832 12 3577788887541
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCc-ccc-HH-------------HHHHHHHHHHHHHHHhcccCCEEEEEecCCCCh
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLH-DMD-EF-------------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~-~~~-~~-------------~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~ 173 (192)
+++.+||+|+||++....... ... +. .-......++..+.++|+|||.+++.+ .....
T Consensus 202 ------~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~q~ 274 (506)
T PRK01544 202 ------IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GFKQE 274 (506)
T ss_pred ------CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CCchH
Confidence 234589999999863221110 000 00 011234567888999999999998854 33344
Q ss_pred HHHHHHHHcc-CCeeeE
Q 029488 174 SLLYCQVNKM-LVKTPV 189 (192)
Q Consensus 174 ~~l~~~l~~~-f~~v~~ 189 (192)
..+...+... |..+++
T Consensus 275 ~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 275 EAVTQIFLDHGYNIESV 291 (506)
T ss_pred HHHHHHHHhcCCCceEE
Confidence 4555555543 555544
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=5.1e-10 Score=89.56 Aligned_cols=91 Identities=12% Similarity=0.148 Sum_probs=68.2
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
+++.+|||+|||+|..+..+++..+ +.++|+|+|+++.. .. .++++..+|..+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~------------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIE------------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-
Confidence 6789999999999999999999874 46899999999731 12 24778888887531
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
....+||.|+++.... + ....+.+.|||||.+++-+
T Consensus 138 -------~~~~~fD~Ii~~~~~~--------~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 -------EKHAPFDAIIVTAAAS--------T---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -------ccCCCccEEEEccCcc--------h---------hhHHHHHhcCcCcEEEEEE
Confidence 1235899999987532 1 1134568999999998855
No 89
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.12 E-value=1.4e-10 Score=82.28 Aligned_cols=90 Identities=28% Similarity=0.440 Sum_probs=61.9
Q ss_pred EEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHHHHhh
Q 029488 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 45 vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
|||+|||+|..+..+++..+. ++..+++|+|+++.. .-.+++++++|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-------- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-------- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH--------
T ss_pred CEEeecCCcHHHHHHHHHhhh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc--------
Confidence 799999999999999988620 034899999999841 1137899999998843
Q ss_pred cCCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCC
Q 029488 115 FDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (192)
Q Consensus 115 ~~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG 161 (192)
..+++||+|++.+. ++. ........+++.+.++|||||
T Consensus 63 ~~~~~~D~v~~~~~~~~~---------~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 FSDGKFDLVVCSGLSLHH---------LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHSSSEEEEEE-TTGGGG---------SSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCeeEEEEcCCccCC---------CCHHHHHHHHHHHHHHhCCCC
Confidence 13469999999543 321 122233578899999999998
No 90
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.12 E-value=1e-10 Score=88.53 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=69.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCceEEecccCCchhHHHHHhhcCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDG 117 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-~~~v~~~~~Di~~~~~~~~~~~~~~~ 117 (192)
..++++|||+|||+|.++..+++.. .+|+|+|+++... ..++.....+.... ..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---------------~~~~g~D~~~~~~~~~~~~~~~~~~~~~--------~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---------------FEVTGVDISPQMIEKRNVVFDNFDAQDP--------PFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---------------SEEEEEESSHHHHHHTTSEEEEEECHTH--------HCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---------------CEEEEEECCHHHHhhhhhhhhhhhhhhh--------hccc
Confidence 4678999999999999999996652 4999999997321 12222233222221 1245
Q ss_pred CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
++||+|+|....+.. .. ...++..+.++|||||.+++.++...
T Consensus 77 ~~fD~i~~~~~l~~~-----~d------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 77 GSFDLIICNDVLEHL-----PD------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSEEEEEEESSGGGS-----SH------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cchhhHhhHHHHhhc-----cc------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 799999998754322 11 24678899999999999999887653
No 91
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.11 E-value=2.9e-10 Score=96.94 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=68.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~ 108 (192)
++.+|||+|||+|.++..+++. .++|+|+|+++.. . ..++.++.+|+.+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-- 193 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---------------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-- 193 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---------------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--
Confidence 5779999999999999999864 3699999999731 1 135777788775521
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
..+++||+|+|....+.. .+ ...++..+.++|||||.+++.+..
T Consensus 194 ------~~~~~FD~Vi~~~vLeHv----~d-------~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 194 ------DEGRKFDAVLSLEVIEHV----AN-------PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred ------hccCCCCEEEEhhHHHhc----CC-------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 234689999996532211 11 135788889999999999987653
No 92
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.11 E-value=3.9e-10 Score=91.80 Aligned_cols=112 Identities=20% Similarity=0.129 Sum_probs=78.2
Q ss_pred hCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C-C----CC
Q 029488 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M-A----PI 92 (192)
Q Consensus 19 ~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~-~-~----~~ 92 (192)
..|++|+++||.++.+.+....++++|||+|||||+|+..+++.. ..+|+|+|+++ + . ..
T Consensus 53 ~~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g--------------a~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 53 PLFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG--------------AKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred cchhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC--------------CCEEEEEeCCHHHHHHHHhcC
Confidence 349999999999999998866688999999999999999999872 57999999998 2 1 23
Q ss_pred CCce-EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 93 EGVI-QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 93 ~~v~-~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+++. +...|+.+.. . +.. ..|++.+|.++- +.. ..+..+...|+| |.+++.+
T Consensus 119 ~~v~~~~~~ni~~~~-~----~~~---~~d~~~~Dvsfi-----------S~~---~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 119 ERVKVLERTNIRYVT-P----ADI---FPDFATFDVSFI-----------SLI---SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCeeEeecCCcccCC-H----hHc---CCCceeeeEEEe-----------ehH---hHHHHHHHHhCc-CeEEEEc
Confidence 4443 3344666322 1 111 136666665431 111 246677889999 8887643
No 93
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.11 E-value=1.2e-10 Score=82.11 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=50.2
Q ss_pred EeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhHHHHHhh
Q 029488 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 46 LDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
||+|||+|.++..+++.. +..+++|+|+|+..- ..+......+..+.. ..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~------~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF------DY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---------C
T ss_pred CEeCccChHHHHHHHHhC-------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh------hc
Confidence 799999999999999996 478999999998431 112223333333311 11
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKF 163 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~ 163 (192)
...++||+|++....+.. ......++.+.++|||||.|
T Consensus 62 ~~~~~fD~V~~~~vl~~l-----------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 DPPESFDLVVASNVLHHL-----------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp CC----SEEEEE-TTS-------------S-HHHHHHHHTTT-TSS-EE
T ss_pred ccccccceehhhhhHhhh-----------hhHHHHHHHHHHHcCCCCCC
Confidence 122599999998655432 11236788999999999986
No 94
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.10 E-value=1.5e-09 Score=101.32 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=75.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCceEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~--~~v~~~~~Di~~~~ 106 (192)
.+|++|||||||+|+++..++... ..+|+++|+++.. .. .+++++++|+.+..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G--------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG--------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL 602 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH
Confidence 358899999999999999999762 4589999999831 22 36788999987631
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+.. +.+||+|++|++....+....+..........++..+.++|+|||.+++..
T Consensus 603 ------~~~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 603 ------KEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred ------HHc-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 112 458999999986433221111112223344567888999999999998754
No 95
>PRK00811 spermidine synthase; Provisional
Probab=99.09 E-value=8.1e-10 Score=92.67 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=87.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCceEEecccC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------------~~~~v~~~~~Di~ 103 (192)
..+++||+||||.|+.+..+++.. +..+|++||+++.. ..+++.++.+|..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-------------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-------------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-------------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 456899999999999999998763 35799999999831 1357888888876
Q ss_pred CchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC----CChHHHHHH
Q 029488 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG----KDTSLLYCQ 179 (192)
Q Consensus 104 ~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~----~~~~~l~~~ 179 (192)
+.. .. .+++||+|++|..... +.. .+ -.....++.+.+.|+|||.+++..-.. .....+...
T Consensus 142 ~~l------~~-~~~~yDvIi~D~~dp~-~~~--~~----l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~t 207 (283)
T PRK00811 142 KFV------AE-TENSFDVIIVDSTDPV-GPA--EG----LFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRK 207 (283)
T ss_pred HHH------hh-CCCcccEEEECCCCCC-Cch--hh----hhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHH
Confidence 621 11 3468999999975322 110 01 112456788999999999999854322 234566678
Q ss_pred HHccCCeeeEEe
Q 029488 180 VNKMLVKTPVYF 191 (192)
Q Consensus 180 l~~~f~~v~~~~ 191 (192)
++..|..|.++.
T Consensus 208 l~~~F~~v~~~~ 219 (283)
T PRK00811 208 LKEVFPIVRPYQ 219 (283)
T ss_pred HHHHCCCEEEEE
Confidence 888899887763
No 96
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.09 E-value=7.9e-10 Score=87.43 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=79.0
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHHHHHh
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.++||+|||.|.++..|+.+. .+++++|+++. ...++|++.+.|+.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---------------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-------- 101 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---------------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-------- 101 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---------------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------
T ss_pred ceeEecCCCccHHHHHHHHhh---------------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC--------
Confidence 589999999999999999996 48999999984 2457899999999874
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC---------CCChHHHHHHHHccC
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR---------GKDTSLLYCQVNKML 184 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~---------~~~~~~l~~~l~~~f 184 (192)
.|+++||+|++.....+ ++. ......++..+...|+|||.+|+=.++ ....+-+...+++.|
T Consensus 102 -~P~~~FDLIV~SEVlYY-----L~~---~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 102 -WPEGRFDLIVLSEVLYY-----LDD---AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp ---SS-EEEEEEES-GGG-----SSS---HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred -CCCCCeeEEEEehHhHc-----CCC---HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 36789999998754322 221 112235677788999999999986653 234667777888888
Q ss_pred CeeeE
Q 029488 185 VKTPV 189 (192)
Q Consensus 185 ~~v~~ 189 (192)
.+|+-
T Consensus 173 ~~~~~ 177 (201)
T PF05401_consen 173 TEVER 177 (201)
T ss_dssp EEEEE
T ss_pred hheeE
Confidence 87764
No 97
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.09 E-value=1.5e-09 Score=95.05 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=79.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCceEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~--~~v~~~~~Di~~~~ 106 (192)
.+|++|||+|||+|+++..++.. ...+|+++|+++.. .+ .+++++.+|+.+..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--------------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--------------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 46889999999999999876643 25699999999831 23 36788899987631
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC-CChHHHHHHHHc
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQVNK 182 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~-~~~~~l~~~l~~ 182 (192)
..+. ..+.+||+|++|++....... .-.....-....+..+.++|+|||.|++..... .+...+...+..
T Consensus 285 --~~~~--~~~~~fDlVilDPP~f~~~k~--~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 285 --RTYR--DRGEKFDVIVMDPPKFVENKS--QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred --HHHH--hcCCCCCEEEECCCCCCCChH--HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 1111 124589999999874322111 111111223456778999999999998755433 334445554443
No 98
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.09 E-value=4e-10 Score=90.70 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=68.6
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~~~ 110 (192)
++|||+|||+|+++..+++..+ ..+|+|+|+++.. . ..++++..+|+.+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-------------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 4799999999999999998863 6799999999742 1 135678888885531
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.+ ++||+|++....+... + ....+..+.++|||||.+++..+
T Consensus 64 ----~~-~~fD~I~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 ----FP-DTYDLVFGFEVIHHIK----D-------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ----CC-CCCCEeehHHHHHhCC----C-------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 12 4899999865432211 1 13678889999999999998654
No 99
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.09 E-value=8.5e-10 Score=88.01 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=72.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++.+|||+|||+|.++..+++..+ ..++++++|+++.. ...++.+..+|+.+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~------------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP------------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC------------CCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 4788999999999999999998874 23799999998732 1235778888887632
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
.+.+.||+|++....+. ... ...+++.+.+.|+|||.+++..+.
T Consensus 102 ----~~~~~~D~i~~~~~~~~-----~~~------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 102 ----FEDNSFDAVTIAFGLRN-----VTD------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ----CCCCcEEEEEEeeeeCC-----ccc------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 23468999998654321 111 135788899999999999986553
No 100
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.08 E-value=8.4e-10 Score=92.60 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+.+|||+|||+|..+.+++++. .+|+|+|+++.. .+ ++.+...|+....
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g---------------~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~---- 180 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG---------------FDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS---- 180 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC---------------CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc----
Confidence 4599999999999999998762 699999999742 12 5666677775532
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+ +++||+|++...++.. ........+..+.++|+|||.+++.
T Consensus 181 ----~-~~~fD~I~~~~vl~~l---------~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 ----I-QEEYDFILSTVVLMFL---------NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred ----c-cCCccEEEEcchhhhC---------CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 3589999998653211 1112246788899999999997653
No 101
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.08 E-value=2.2e-10 Score=92.88 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=64.7
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CC-CCce--EEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI-EGVI--QVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------~~-~~v~--~~~~Di~~~~~~~~ 110 (192)
+|.+|||+|||-|.+++.+|+.. ..|+|+|+++.. .. .++. +.+..+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---------------a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed------ 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---------------ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED------ 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---------------CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH------
Confidence 79999999999999999999883 799999999842 11 1332 22222222
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+. ..+++||+|+|--... |..+ ....++.|.+++||||.+++.+-.
T Consensus 118 l~--~~~~~FDvV~cmEVlE----Hv~d-------p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 118 LA--SAGGQFDVVTCMEVLE----HVPD-------PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HH--hcCCCccEEEEhhHHH----ccCC-------HHHHHHHHHHHcCCCcEEEEeccc
Confidence 11 1236999999953211 1111 134678899999999999987654
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.07 E-value=1.3e-09 Score=89.72 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=73.0
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---CCCceEEec-ccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQG-DITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---~~~v~~~~~-Di~~~~~~~~~~~~ 114 (192)
..++++|||+|||+|..+..++... ..+|+|+|+++... ..++..... +.... .
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g--------------~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~--------~ 174 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLG--------------AKKVLAVDIDPQAVEAARENAELNGVELNVYL--------P 174 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcC--------------CCeEEEEECCHHHHHHHHHHHHHcCCCceEEE--------c
Confidence 3578999999999999888776542 35799999998421 011110000 00000 0
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc-CCeee
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM-LVKTP 188 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~-f~~v~ 188 (192)
..+.+||+|+++... ......+..+.++|||||.+++.-+.......+...++.. |..++
T Consensus 175 ~~~~~fD~Vvani~~--------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 175 QGDLKADVIVANILA--------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred cCCCCcCEEEEcCcH--------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence 011279999997531 1113467788999999999999766666677777777765 65443
No 103
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.1e-09 Score=89.54 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=87.5
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~ 106 (192)
+.||++|+|.|.|+|.++.+|+...+ +.++|+.+|+.+.. .+ +++....+|+.+..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg------------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVG------------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhC------------CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 47899999999999999999999887 78999999999741 22 34777788988743
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc-CC
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM-LV 185 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~-f~ 185 (192)
.+..||.|+.|.+- .+ .++..+.++|||||.+++..-..+...+++..|++. |-
T Consensus 160 ---------~~~~vDav~LDmp~---------PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 160 ---------DEEDVDAVFLDLPD---------PW-------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred ---------cccccCEEEEcCCC---------hH-------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 34599999999742 12 467789999999999998766656667777777775 55
Q ss_pred ee
Q 029488 186 KT 187 (192)
Q Consensus 186 ~v 187 (192)
.+
T Consensus 215 ~i 216 (256)
T COG2519 215 DI 216 (256)
T ss_pred ch
Confidence 43
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=99.05 E-value=1.5e-09 Score=90.31 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=72.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
.+.+|||+|||+|.++..++.+.+ ..+|+|+|+++.. ..+++.++++|+.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-------------~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-------------PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--------
Confidence 457999999999999999988752 4799999999842 2457888899987632
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHH--------HH-HHHHHHHHHHhcccCCEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQS--------QL-ILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~--------~l-~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+..||+|++|+++.............. .+ ....+.....+|+|+|.+.+
T Consensus 123 -~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred -ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 2458999999998654322211111011 01 24567778889999998766
No 105
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.05 E-value=4.7e-09 Score=84.58 Aligned_cols=99 Identities=23% Similarity=0.258 Sum_probs=72.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~ 107 (192)
.++.+|||+|||+|.++..++...+ +..+|+++|+++.. ...++.+..+|+.+..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~------------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 116 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG------------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP- 116 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC------------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-
Confidence 4678999999999999999998863 35899999998731 1235777888887642
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
.+...||+|++....+. ... ....+..+.++|+|||.+++..+.
T Consensus 117 -------~~~~~~D~I~~~~~l~~-----~~~------~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 117 -------FPDNSFDAVTIAFGLRN-----VPD------IDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred -------CCCCCccEEEEeccccc-----CCC------HHHHHHHHHHhccCCcEEEEEEec
Confidence 23458999998654321 111 135678889999999999876553
No 106
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.04 E-value=7.9e-10 Score=87.65 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=67.5
Q ss_pred HcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCC--CceEEecccCC
Q 029488 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIE--GVIQVQGDITN 104 (192)
Q Consensus 35 ~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~--~v~~~~~Di~~ 104 (192)
....++ +.++||||||.|.-+.+||.+. ..|+|+|.++.. .-. .+.....|+.+
T Consensus 25 a~~~~~-~g~~LDlgcG~GRNalyLA~~G---------------~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~ 88 (192)
T PF03848_consen 25 AVPLLK-PGKALDLGCGEGRNALYLASQG---------------FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND 88 (192)
T ss_dssp HCTTS--SSEEEEES-TTSHHHHHHHHTT----------------EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC
T ss_pred HHhhcC-CCcEEEcCCCCcHHHHHHHHCC---------------CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh
Confidence 344444 4599999999999999999984 799999999842 012 26667788877
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.. ++ ..+|+|+|...+.. ........++..+...++|||++++.++
T Consensus 89 ~~--------~~-~~yD~I~st~v~~f---------L~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 89 FD--------FP-EEYDFIVSTVVFMF---------LQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp BS---------T-TTEEEEEEESSGGG---------S-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc--------cc-CCcCEEEEEEEecc---------CCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 53 23 58999998654321 1222234567778899999999887554
No 107
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.03 E-value=1.7e-09 Score=87.18 Aligned_cols=115 Identities=11% Similarity=-0.018 Sum_probs=77.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCce
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~---------------~~~v~ 96 (192)
.++.+|||+|||.|..+.+||++ +.+|+|+|+|+.. . ..+++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 56789999999999999999987 3799999999841 1 12467
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC------
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG------ 170 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~------ 170 (192)
+.++|+.+... .....||.|+....+... ........+..+.++|||||++++.+|..
T Consensus 98 ~~~~D~~~~~~-------~~~~~fD~i~D~~~~~~l---------~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~ 161 (213)
T TIGR03840 98 IFCGDFFALTA-------ADLGPVDAVYDRAALIAL---------PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA 161 (213)
T ss_pred EEEccCCCCCc-------ccCCCcCEEEechhhccC---------CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC
Confidence 78889987531 012468998876543211 11223457888999999999876655421
Q ss_pred -----CChHHHHHHHHccCC
Q 029488 171 -----KDTSLLYCQVNKMLV 185 (192)
Q Consensus 171 -----~~~~~l~~~l~~~f~ 185 (192)
.+..+|...+...|.
T Consensus 162 gpp~~~~~~eL~~~f~~~~~ 181 (213)
T TIGR03840 162 GPPFSVSPAEVEALYGGHYE 181 (213)
T ss_pred CcCCCCCHHHHHHHhcCCce
Confidence 134556666654443
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.7e-10 Score=93.30 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=73.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---CCCceEEecc--cCCchhHHHHHhh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGD--ITNARTAEVVIRH 114 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---~~~v~~~~~D--i~~~~~~~~~~~~ 114 (192)
++|++|||+|||+|.++..++... ...|+|+|++|.+- .+|+.-...+ ++.... .....
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG--------------A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~--~~~~~ 224 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG--------------AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF--LLLEV 224 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC--------------CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc--cchhh
Confidence 589999999999999999999884 58899999999531 1121111111 100000 00011
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHH-HccCCeeeE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV-NKMLVKTPV 189 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l-~~~f~~v~~ 189 (192)
..+..||+|++|-- ......+...+.+.|||||+++++=.-.+....+...+ +.-|.-+++
T Consensus 225 ~~~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 225 PENGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred cccCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 23369999999841 11123567788999999999998643333345555555 334554443
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.02 E-value=6.6e-10 Score=86.71 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=81.6
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-ceEEecccCCchhHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNARTAEV 110 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~-v~~~~~Di~~~~~~~~ 110 (192)
.+|||||||+|.+..-|++..- ....+|+|.++.+ ..++ ++|.+.||+++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf-------------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~--- 132 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGF-------------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF--- 132 (227)
T ss_pred cceeeccCCchHHHHHHHHhcC-------------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc---
Confidence 4999999999999999988743 4569999999842 1344 8899999999642
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM 183 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~ 183 (192)
. .++||+|+--+..++.+.+........ ..-+..+.++|+|||.|++ +....+..+|...+...
T Consensus 133 ----~-~~qfdlvlDKGT~DAisLs~d~~~~r~---~~Y~d~v~~ll~~~gifvI-tSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 133 ----L-SGQFDLVLDKGTLDAISLSPDGPVGRL---VVYLDSVEKLLSPGGIFVI-TSCNFTKDELVEEFENF 196 (227)
T ss_pred ----c-ccceeEEeecCceeeeecCCCCcccce---eeehhhHhhccCCCcEEEE-EecCccHHHHHHHHhcC
Confidence 3 358999987776554443311100000 1125566799999999999 66667788888877764
No 110
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.02 E-value=3e-09 Score=85.24 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=69.7
Q ss_pred CcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHH
Q 029488 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 37 ~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~ 110 (192)
..+.++.+|||+|||+|.++..+++..+ ..+++|+|+|+.. ..+++.+.++|+.++
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~-------------~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~----- 100 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRLLP-------------FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP----- 100 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC-----
Confidence 3356788999999999999999988763 6899999999842 245677888888762
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+++++||+|++....... +. .....++..+.+++ ++.+++..+
T Consensus 101 ----~~~~sfD~V~~~~vL~hl---~p------~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 101 ----FKDNFFDLVLTKGVLIHI---NP------DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ----CCCCCEEEEEECChhhhC---CH------HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 346799999998754311 11 11235677777776 456665443
No 111
>PHA03412 putative methyltransferase; Provisional
Probab=99.02 E-value=1.3e-09 Score=88.79 Aligned_cols=104 Identities=17% Similarity=0.289 Sum_probs=70.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhhc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
+.+|||+|||+|.++..+++++... +...|+|+|+++.. ..+++.++++|+.+.. .
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~--------~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA----------KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE--------F 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC----------CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------c
Confidence 6799999999999999999875310 24699999999842 2456788899987632 1
Q ss_pred CCCcccEEEeCCCCCCCCCcccc-HHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMD-EFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~-~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
..+||+|++|+++......+.. ..........++..|.+++++|+ |++
T Consensus 112 -~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 112 -DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred -cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 3489999999986533322211 01112334567788888666666 444
No 112
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.01 E-value=4.1e-09 Score=91.80 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCceEEecccCCchh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~--~~v~~~~~Di~~~~~ 107 (192)
.|++|||+.|-||+||.+++... ..+|++||+|.-. .+ ..+.++++|+.+.-.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG--------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~ 282 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG--------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLR 282 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC--------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH
Confidence 39999999999999999999763 4699999999731 22 346789999987421
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC-CCChHHHHHH
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR-GKDTSLLYCQ 179 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~-~~~~~~l~~~ 179 (192)
... ..+.+||+|+.|++.-..+- -+.+...+....++..+.++|+|||++++.+.. ......++..
T Consensus 283 --~~~--~~g~~fDlIilDPPsF~r~k--~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~ 349 (393)
T COG1092 283 --KAE--RRGEKFDLIILDPPSFARSK--KQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEI 349 (393)
T ss_pred --HHH--hcCCcccEEEECCcccccCc--ccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHH
Confidence 111 23569999999986332221 122444455567889999999999999987654 3344444443
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.01 E-value=1.2e-09 Score=97.37 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~~ 111 (192)
++.+|||+|||+|.++..+++.. .+|+|+|+++.. ..+++.++.+|..+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---------------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~---- 97 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---------------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL---- 97 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc----
Confidence 57799999999999999999874 589999999831 13567888899865321
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+++++||+|+++.+.+.. .......++..+.++|||||.++++.
T Consensus 98 --~~~~~~fD~I~~~~~l~~l---------~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 --NISDGSVDLIFSNWLLMYL---------SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred --CCCCCCEEEEehhhhHHhC---------CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2456799999998754321 11112467888999999999998863
No 114
>PRK05785 hypothetical protein; Provisional
Probab=99.00 E-value=2.7e-09 Score=86.68 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=63.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-C--CCCceEEecccCCchhHHHHHhhcC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-P--IEGVIQVQGDITNARTAEVVIRHFD 116 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-~--~~~v~~~~~Di~~~~~~~~~~~~~~ 116 (192)
.++.+|||+|||||.++..+++.. ..+|+|+|+++.. . .....++++|..+. .++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--------------~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~l--------p~~ 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--------------KYYVVALDYAENMLKMNLVADDKVVGSFEAL--------PFR 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--------------CCEEEEECCCHHHHHHHHhccceEEechhhC--------CCC
Confidence 357899999999999999998874 2699999999832 1 11223566777653 245
Q ss_pred CCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC
Q 029488 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (192)
Q Consensus 117 ~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg 160 (192)
+++||+|++....+ +..+ ...+++++.++|||.
T Consensus 108 d~sfD~v~~~~~l~-----~~~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALH-----ASDN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhh-----ccCC------HHHHHHHHHHHhcCc
Confidence 78999999976432 2221 136789999999994
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=7e-09 Score=86.95 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=76.1
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHHHH
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
+|||+|||+|..+..++... +..+|+|+|+|+.+ .+.++.++++|....
T Consensus 113 ~ilDlGTGSG~iai~la~~~-------------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~------- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-------------PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP------- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-------------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------
Confidence 79999999999999999997 47899999999842 123455566666653
Q ss_pred hhcCCCcccEEEeCCCCCCCC-Ccccc-----HHH--------HHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHH
Q 029488 113 RHFDGCKADLVVCDGAPDVTG-LHDMD-----EFV--------QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g-~~~~~-----~~~--------~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~ 178 (192)
+++ +||+|+||++.-... ..... +.. -.......+..+.+.|+|||.+++.+- ......+..
T Consensus 173 --~~~-~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~~q~~~v~~ 248 (280)
T COG2890 173 --LRG-KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-LTQGEAVKA 248 (280)
T ss_pred --cCC-ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-CCcHHHHHH
Confidence 333 999999998631111 00100 000 123456778999999999999988543 233344444
Q ss_pred HHHc
Q 029488 179 QVNK 182 (192)
Q Consensus 179 ~l~~ 182 (192)
.+..
T Consensus 249 ~~~~ 252 (280)
T COG2890 249 LFED 252 (280)
T ss_pred HHHh
Confidence 4443
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.99 E-value=1.5e-09 Score=85.63 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=71.7
Q ss_pred CcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHH
Q 029488 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 37 ~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
.+++||.+|||||||.|.+..+|.+.. ..+.+|+|+++.. .-.++..+++|+.+- .
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k--------------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------L 68 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEK--------------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------L 68 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhc--------------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------H
Confidence 356899999999999999999999873 6899999999853 135788999999762 2
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
..+++++||.|+.+-+ .|+. .-...+|.+ +||-|...++ .|...
T Consensus 69 ~~f~d~sFD~VIlsqt--------LQ~~---~~P~~vL~E---mlRVgr~~IV-sFPNF 112 (193)
T PF07021_consen 69 ADFPDQSFDYVILSQT--------LQAV---RRPDEVLEE---MLRVGRRAIV-SFPNF 112 (193)
T ss_pred hhCCCCCccEEehHhH--------HHhH---hHHHHHHHH---HHHhcCeEEE-EecCh
Confidence 4578899999997532 2221 112344554 4566777777 55443
No 117
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.98 E-value=2.8e-09 Score=87.71 Aligned_cols=118 Identities=13% Similarity=0.113 Sum_probs=83.1
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~ 106 (192)
++||++||+.|.|+|++|.+|++.++ |.++|+..|..+.. .+ .++++...|+.+..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~------------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG------------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC------------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 48999999999999999999999987 78999999998731 23 47889999997632
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhc-ccCCEEEEEecCCCChHHHHHHHHcc-C
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL-KEGGKFIAKIFRGKDTSLLYCQVNKM-L 184 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L-kpgG~~v~k~~~~~~~~~l~~~l~~~-f 184 (192)
. .+.+ +..+|.|+.|.+-.. .++..+.++| ||||.+++..-.-+..+.+...|+++ |
T Consensus 106 ~----~~~~-~~~~DavfLDlp~Pw----------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 106 F----DEEL-ESDFDAVFLDLPDPW----------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp -----STT--TTSEEEEEEESSSGG----------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred c----cccc-cCcccEEEEeCCCHH----------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 1 0111 358999999975211 2466788999 99999998765555666777777774 6
Q ss_pred CeeeE
Q 029488 185 VKTPV 189 (192)
Q Consensus 185 ~~v~~ 189 (192)
..+++
T Consensus 165 ~~i~~ 169 (247)
T PF08704_consen 165 TDIET 169 (247)
T ss_dssp EEEEE
T ss_pred eeeEE
Confidence 65554
No 118
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.98 E-value=1.3e-09 Score=91.63 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=83.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------C-----CCCceEEeccc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P-----IEGVIQVQGDI 102 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~-----~~~v~~~~~Di 102 (192)
++++.++|||||-||-..-.-.. .-+.++|+||...- . +-.+.|+.+|+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--------------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--------------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--------------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 68999999999999988655433 24799999999731 1 12467899999
Q ss_pred CCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHc
Q 029488 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182 (192)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~ 182 (192)
+.......+. .++.+||+|-|..++|++- .+..-...+|..+.+.|||||.|+..+- +...+++.++.
T Consensus 182 ~~~~l~d~~e--~~dp~fDivScQF~~HYaF-------etee~ar~~l~Nva~~LkpGG~FIgTiP---dsd~Ii~rlr~ 249 (389)
T KOG1975|consen 182 FKERLMDLLE--FKDPRFDIVSCQFAFHYAF-------ETEESARIALRNVAKCLKPGGVFIGTIP---DSDVIIKRLRA 249 (389)
T ss_pred chhHHHHhcc--CCCCCcceeeeeeeEeeee-------ccHHHHHHHHHHHHhhcCCCcEEEEecC---cHHHHHHHHHh
Confidence 9865443321 2444599999999877542 2222235678999999999999999663 45566666665
No 119
>PLN02366 spermidine synthase
Probab=98.98 E-value=5.5e-09 Score=88.65 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=85.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~ 104 (192)
.+.++||++|||.|+.+..+++. + +..+|+.||+++.. ..++++++.+|...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~------------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-S------------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 45789999999999999999866 2 35789999999831 13578888888765
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec----CCCChHHHHHHH
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF----RGKDTSLLYCQV 180 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~----~~~~~~~l~~~l 180 (192)
. .+..+++.||+|++|..... +. ..+ -.....++.+.+.|+|||.+++..- .......+...+
T Consensus 157 ~------l~~~~~~~yDvIi~D~~dp~-~~--~~~----L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl 223 (308)
T PLN02366 157 F------LKNAPEGTYDAIIVDSSDPV-GP--AQE----LFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAIC 223 (308)
T ss_pred H------HhhccCCCCCEEEEcCCCCC-Cc--hhh----hhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHH
Confidence 2 12223468999999975321 11 000 1124568889999999999987432 223355677788
Q ss_pred HccC-CeeeE
Q 029488 181 NKML-VKTPV 189 (192)
Q Consensus 181 ~~~f-~~v~~ 189 (192)
+..| ..|..
T Consensus 224 ~~~F~~~v~~ 233 (308)
T PLN02366 224 RETFKGSVNY 233 (308)
T ss_pred HHHCCCceeE
Confidence 8889 56654
No 120
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.97 E-value=5.2e-09 Score=83.82 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=66.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++++.+|||+|||+|.++..++... .+|+++|+++.. ...++.+..+|..+..
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~---------------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 139 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV---------------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW- 139 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh---------------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-
Confidence 3678999999999999999888774 489999999731 2346788888875521
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.+..+||+|+++.++.. ......+.|+|||.+++.+.
T Consensus 140 -------~~~~~fD~I~~~~~~~~-----------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 -------PAYAPFDRILVTAAAPE-----------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------CcCCCcCEEEEccCchh-----------------hhHHHHHhcCCCcEEEEEEc
Confidence 12358999999864321 12235689999999998765
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=4.5e-09 Score=89.64 Aligned_cols=92 Identities=26% Similarity=0.284 Sum_probs=67.2
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~ 107 (192)
++++++|||+|||+|.++..+++..+ ..+.|+++|+++. ...+++.++.+|..+..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~------------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~- 144 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVG------------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV- 144 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-
Confidence 36789999999999999999999874 3468999999983 12457888888875421
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+..+||+|+++.... + ....+.+.|+|||.+++.+
T Consensus 145 -------~~~~~fD~Ii~~~g~~-----~------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 -------PEFAPYDVIFVTVGVD-----E------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -------cccCCccEEEECCchH-----H------------hHHHHHHhcCCCCEEEEEe
Confidence 1224799999975321 1 1123567899999998854
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.96 E-value=4.7e-09 Score=88.48 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=72.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~ 106 (192)
..+|++|||+|||+|..+..++... ..+|+|+|++|.+ ... ++.. ....+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klG--------------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~-- 220 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLG--------------AKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSED-- 220 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTT--------------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSC--
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcC--------------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecc--
Confidence 3678999999999999999998874 5789999999953 111 2211 11111
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCe
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVK 186 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~ 186 (192)
....+||+|++|.-. .....+.....+.|+|||+|+++=.-.+....+...++.-|.-
T Consensus 221 --------~~~~~~dlvvANI~~--------------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~ 278 (295)
T PF06325_consen 221 --------LVEGKFDLVVANILA--------------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFEL 278 (295)
T ss_dssp --------TCCS-EEEEEEES-H--------------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEE
T ss_pred --------cccccCCEEEECCCH--------------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEE
Confidence 123699999998521 1112455667789999999999765556667777777654544
Q ss_pred e
Q 029488 187 T 187 (192)
Q Consensus 187 v 187 (192)
+
T Consensus 279 ~ 279 (295)
T PF06325_consen 279 V 279 (295)
T ss_dssp E
T ss_pred E
Confidence 3
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=4e-09 Score=88.70 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCeEEeEcCCCChHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CC-CCceEEecccCCch
Q 029488 41 GVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQGDITNAR 106 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~-~~v~~~~~Di~~~~ 106 (192)
++++|+|+|||||+.+..+.. ... +.++++++|+++.. .+ ++++|..+|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~------------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL------------PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 678999999999988755443 333 68899999999831 12 46999999998731
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
. ....||+|+++ +... ++. .....++..+.+.|+|||.+++..
T Consensus 191 ~--------~l~~FDlVF~~-ALi~-----~dk----~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 E--------SLKEYDVVFLA-ALVG-----MDK----EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred c--------ccCCcCEEEEe-cccc-----ccc----ccHHHHHHHHHHhcCCCcEEEEec
Confidence 0 12589999998 3221 110 011467888999999999999976
No 124
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.95 E-value=3.7e-09 Score=87.87 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCCeEEeEcCCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC------------------
Q 029488 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI------------------ 92 (192)
Q Consensus 41 ~g~~vLDlG~GpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~------------------ 92 (192)
++.+|+|+|||+|. ++..+++..+. ......+|+|+|+++.. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~--------~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPK--------AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhh--------cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 45799999999995 66677776530 00125799999999831 10
Q ss_pred --------------CCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcc
Q 029488 93 --------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 158 (192)
Q Consensus 93 --------------~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lk 158 (192)
.++.|.++|+.+.. .+.++||+|+|...... . .......++..+.+.|+
T Consensus 171 ~~~~~~~~v~~~ir~~V~F~~~dl~~~~--------~~~~~fD~I~crnvl~y-----f----~~~~~~~~l~~l~~~L~ 233 (264)
T smart00138 171 SRVEDKYRVKPELKERVRFAKHNLLAES--------PPLGDFDLIFCRNVLIY-----F----DEPTQRKLLNRFAEALK 233 (264)
T ss_pred EeCCCeEEEChHHhCcCEEeeccCCCCC--------CccCCCCEEEechhHHh-----C----CHHHHHHHHHHHHHHhC
Confidence 25778888888743 23568999999643221 1 11223467889999999
Q ss_pred cCCEEEE
Q 029488 159 EGGKFIA 165 (192)
Q Consensus 159 pgG~~v~ 165 (192)
|||+|++
T Consensus 234 pGG~L~l 240 (264)
T smart00138 234 PGGYLFL 240 (264)
T ss_pred CCeEEEE
Confidence 9999998
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.94 E-value=2.7e-09 Score=85.80 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=67.7
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~ 107 (192)
++||++|||+|||+|-.+..++...+ +.+.|+++|..+.. .+.|+.+..+|...-.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg------------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~- 136 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG------------PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW- 136 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS------------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC------------ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-
Confidence 68999999999999999999999987 67899999999841 3458999999986532
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
-...+||.|++.++... .- ....+.||+||.+++-+-
T Consensus 137 -------~~~apfD~I~v~~a~~~-----ip------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 -------PEEAPFDRIIVTAAVPE-----IP------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -------GGG-SEEEEEESSBBSS-------------------HHHHHTEEEEEEEEEEES
T ss_pred -------ccCCCcCEEEEeeccch-----HH------------HHHHHhcCCCcEEEEEEc
Confidence 12358999999875421 10 124578999999998654
No 126
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.8e-08 Score=69.04 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=67.9
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHHHH
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
+++|+|||+|.++..++.. ...+++++|+++.. ...++.++.+|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASG--------------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--------------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----
Confidence 5899999999999999872 36899999999731 12456778888877532
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
....++|+|+++...... .......++.+.+.|||||.+++.
T Consensus 62 --~~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 --EADESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --ccCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 134689999999764321 122346678888999999999874
No 127
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.87 E-value=7.9e-09 Score=86.69 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=75.2
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCceEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------------~~~~v~~~~~Di~~~~ 106 (192)
.+|++|||+.|-+|+|+.+++.. ...+|++||.|... ...+++++.+|+.+..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g--------------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG--------------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL 187 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT--------------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHC--------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 35899999999999999998754 25789999999621 1347889999998742
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC-CChHHHHHHHH
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQVN 181 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~-~~~~~l~~~l~ 181 (192)
..+. ...+||+|++|++.-..+.... .+....++..+.++|+|||.+++..... .+...++..++
T Consensus 188 --~~~~---~~~~fD~IIlDPPsF~k~~~~~-----~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 188 --KRLK---KGGRFDLIILDPPSFAKSKFDL-----ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp --HHHH---HTT-EEEEEE--SSEESSTCEH-----HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred --HHHh---cCCCCCEEEECCCCCCCCHHHH-----HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence 2222 2359999999987544443332 1234567888999999999988655433 33444555444
No 128
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.87 E-value=1.6e-08 Score=81.88 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=76.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCce
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~---------------~~~v~ 96 (192)
.++.+|||+|||.|.-+.+|+++ +.+|+|||+++.+ . ..+++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---------------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 46789999999999999999986 3799999999741 1 12467
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe--cCC----
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI--FRG---- 170 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~--~~~---- 170 (192)
+.++|+.+... .....||+|+.-..+.. ....+....+..+.++|||||++++.+ +..
T Consensus 101 ~~~~D~~~l~~-------~~~~~fd~v~D~~~~~~---------l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~ 164 (218)
T PRK13255 101 IYCGDFFALTA-------ADLADVDAVYDRAALIA---------LPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA 164 (218)
T ss_pred EEECcccCCCc-------ccCCCeeEEEehHhHhh---------CCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC
Confidence 78888887531 01247899886543221 112233567888999999999754433 321
Q ss_pred -----CChHHHHHHHHccCC
Q 029488 171 -----KDTSLLYCQVNKMLV 185 (192)
Q Consensus 171 -----~~~~~l~~~l~~~f~ 185 (192)
.+..++...+..+|+
T Consensus 165 gPp~~~~~~el~~~~~~~~~ 184 (218)
T PRK13255 165 GPPFSVSDEEVEALYAGCFE 184 (218)
T ss_pred CCCCCCCHHHHHHHhcCCce
Confidence 134566666665554
No 129
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=3.2e-08 Score=84.71 Aligned_cols=141 Identities=20% Similarity=0.187 Sum_probs=87.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
+||.+|||+|++||+.|..+.+-.... ...+.|++-|+++.. +.++....+.|+......
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~---------~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~ 224 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKD---------PTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNI 224 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcC---------CCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccc
Confidence 789999999999999998888876410 014699999999731 223444445555433221
Q ss_pred HH-HHhhcCCCcccEEEeCCCCCCCCCcc--ccHHH----H------HHHHHHHHHHHHHhcccCCEEEEEecCCC---C
Q 029488 109 EV-VIRHFDGCKADLVVCDGAPDVTGLHD--MDEFV----Q------SQLILAGLTVVTHVLKEGGKFIAKIFRGK---D 172 (192)
Q Consensus 109 ~~-~~~~~~~~~~DlV~~d~~~~~~g~~~--~~~~~----~------~~l~~~~l~~a~~~LkpgG~~v~k~~~~~---~ 172 (192)
.- =........||-|+||.++..-|... .+-+. . -.++..+|..++++||+||++|..+.... +
T Consensus 225 ~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 225 YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 00 00001235899999998765444211 11111 1 12456789999999999999999887654 3
Q ss_pred hHHHHHHHHccCCeeeE
Q 029488 173 TSLLYCQVNKMLVKTPV 189 (192)
Q Consensus 173 ~~~l~~~l~~~f~~v~~ 189 (192)
..-+...++.+...+.+
T Consensus 305 EaVV~~~L~~~~~~~~l 321 (375)
T KOG2198|consen 305 EAVVQEALQKVGGAVEL 321 (375)
T ss_pred HHHHHHHHHHhcCcccc
Confidence 33344466666655544
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.86 E-value=3.8e-08 Score=81.97 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=81.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~ 104 (192)
+.+++||++|||.|+.+..++... +..+|+++|+++.. ..+++.++.+|..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-------------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-------------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-------------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH
Confidence 345699999999999998887764 35789999999731 12356666666543
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC----ChHHHHHHH
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQV 180 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~----~~~~l~~~l 180 (192)
. + +.. .++||+|++|..... +. ..+ -.....++.+.+.|+|||.+++..-... ....+...+
T Consensus 138 ~-----l-~~~-~~~yDvIi~D~~~~~-~~--~~~----l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl 203 (270)
T TIGR00417 138 F-----L-ADT-ENTFDVIIVDSTDPV-GP--AET----LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV 203 (270)
T ss_pred H-----H-HhC-CCCccEEEEeCCCCC-Cc--ccc----hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH
Confidence 1 1 112 358999999975221 10 000 0124667888999999999998633222 234455578
Q ss_pred HccCCeeeEE
Q 029488 181 NKMLVKTPVY 190 (192)
Q Consensus 181 ~~~f~~v~~~ 190 (192)
+..|..|..|
T Consensus 204 ~~~F~~v~~~ 213 (270)
T TIGR00417 204 KEAFPITEYY 213 (270)
T ss_pred HHHCCCeEEE
Confidence 8889988765
No 131
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.86 E-value=6.7e-09 Score=88.93 Aligned_cols=104 Identities=22% Similarity=0.177 Sum_probs=70.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------------CC----CCceEEe
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------------PI----EGVIQVQ 99 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------------~~----~~v~~~~ 99 (192)
++.+|||||||-||-..=+.... ...++|+|++... .. -...++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--------------i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--------------IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchhHHHHHhcC--------------CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 78999999999999876665542 5799999999731 00 2356678
Q ss_pred cccCCchhHHHHHhhcCC--CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 100 GDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 100 ~Di~~~~~~~~~~~~~~~--~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+|.+... +.+.++. ..||+|-|..+.|+.- .+......+|..+...|||||.|+..+.+
T Consensus 128 ~D~f~~~----l~~~~~~~~~~FDvVScQFalHY~F-------ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 128 ADCFSES----LREKLPPRSRKFDVVSCQFALHYAF-------ESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp STTCCSH----HHCTSSSTTS-EEEEEEES-GGGGG-------SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccccch----hhhhccccCCCcceeehHHHHHHhc-------CCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 8888643 3344444 4999999998876532 22233457899999999999999997765
No 132
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.86 E-value=3.8e-08 Score=83.23 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=67.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCC--ceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG--VIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~--v~~~~~Di~~~~ 106 (192)
+.++.+|||+|||+|.++..+++... ...+|+|+|+|+.. ..++ +..+.+|..+..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~------------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALR------------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhc------------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 45778999999999999999998863 25789999999831 1244 456789998732
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
. +..........+++++.+. .+.... .....++.+.+.|+|||.|++-+-
T Consensus 129 ~---~~~~~~~~~~~~~~~gs~~-----~~~~~~----e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 129 A---LPPEPAAGRRLGFFPGSTI-----GNFTPE----EAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred h---hhcccccCCeEEEEecccc-----cCCCHH----HHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 1111111122233333222 122211 124678889999999999998553
No 133
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.85 E-value=9.4e-09 Score=86.83 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=70.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~-~~v~~~~~Di~~~~~ 107 (192)
++++.+|||+|||+|.++..++++. |..+++++|+.++. .. ++++++.+|..+..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-------------p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-------------PELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-------------CCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 4677899999999999999999997 47899999974321 12 36888999987532
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
++ .+|+|++....+ .... ..+..+++.+.+.|||||.+++..+
T Consensus 213 -------~~--~~D~v~~~~~lh-----~~~~----~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 -------YP--EADAVLFCRILY-----SANE----QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -------CC--CCCEEEeEhhhh-----cCCh----HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22 469887643221 1211 1224678899999999999988643
No 134
>PLN02672 methionine S-methyltransferase
Probab=98.84 E-value=3.7e-08 Score=94.93 Aligned_cols=128 Identities=18% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C----------------CCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P----------------IEG 94 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~----------------~~~ 94 (192)
+.+|||+|||+|..+..++... +..+|+|+|+++.+ . ..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-------------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-------------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc
Confidence 5689999999999999999987 36799999999841 0 125
Q ss_pred ceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCC-cccc----------------------H----HHHHHHHH
Q 029488 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-HDMD----------------------E----FVQSQLIL 147 (192)
Q Consensus 95 v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~-~~~~----------------------~----~~~~~l~~ 147 (192)
++++++|+.+.- .. .+.+||+|+||++--..+. ...+ . ..-.....
T Consensus 186 V~f~~sDl~~~~------~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr 258 (1082)
T PLN02672 186 VEFYESDLLGYC------RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIA 258 (1082)
T ss_pred EEEEECchhhhc------cc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHH
Confidence 888999987631 00 0136999999986211110 0000 0 11123456
Q ss_pred HHHHHHHHhcccCCEEEEEecCCCChHHHH-HHHHcc-CCeeeEE
Q 029488 148 AGLTVVTHVLKEGGKFIAKIFRGKDTSLLY-CQVNKM-LVKTPVY 190 (192)
Q Consensus 148 ~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~-~~l~~~-f~~v~~~ 190 (192)
.++..+.+.|||||.+++.+- ...-+.+. .++... |+.++++
T Consensus 259 ~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred HHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEEe
Confidence 788999999999999998553 33333444 345443 6666553
No 135
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.83 E-value=1.4e-08 Score=83.35 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=61.5
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-C-----CceEEecccCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-E-----GVIQVQGDITN 104 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~-----~v~~~~~Di~~ 104 (192)
|++|||+|||.|-.|+.|++.. ..|+|+|+++.. |. . ++++...|...
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---------------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---------------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhhC---------------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 4889999999999999999873 799999999731 11 1 23333333333
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
. ...||.|+|... ..|.. .....+.-+.+.|||||.+++.+
T Consensus 155 ----------~-~~~fDaVvcsev--------leHV~---dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 155 ----------L-TGKFDAVVCSEV--------LEHVK---DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ----------c-ccccceeeeHHH--------HHHHh---CHHHHHHHHHHHhCCCCceEeee
Confidence 1 236999998532 22222 12356777889999999999865
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.81 E-value=3.6e-08 Score=80.55 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=71.8
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
.++++|||+|||+|.-+..++...+ +.++|+++|+++.. .+ .+++++.+|..+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~------------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP------------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 4678999999999999999988775 57899999999841 22 3678889988763
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+....+..+||+|+.|+.. ..+ ...+..+.+.|||||.+++-
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k--------~~y------~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK--------PNY------VHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH--------HHH------HHHHHHHHHhcCCCeEEEEE
Confidence 1222111223589999999742 111 24567788999999998863
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.81 E-value=2.7e-08 Score=77.01 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=64.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. ..++++++++|+.+..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---------------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~---- 72 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---------------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD---- 72 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---------------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC----
Confidence 567899999999999999999873 689999999731 1347888999998753
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.++..+|.|++|.+.+. ...+...++.. ..+.++|.|++..
T Consensus 73 ----~~~~~~d~vi~n~Py~~----------~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYNI----------STPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred ----ccccCCCEEEECCCccc----------HHHHHHHHHhc--CCCcceEEEEEEH
Confidence 23346999999986532 11222223332 2355888887753
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.81 E-value=2.6e-08 Score=90.21 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=81.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------------CCCCceEEecc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------------~~~~v~~~~~D 101 (192)
+++++|||+|||+|..+..+++. + +..+|+++|+++.. ..++++++.+|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~------------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-P------------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C------------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 45789999999999999998865 2 24799999998731 12567778888
Q ss_pred cCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec----CCCChHHHH
Q 029488 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF----RGKDTSLLY 177 (192)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~----~~~~~~~l~ 177 (192)
..+.. +.. .++||+|++|.+... + ... ..-...+.++.+.+.|||||.+++... +.+....+.
T Consensus 363 a~~~l------~~~-~~~fDvIi~D~~~~~-~---~~~--~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~ 429 (521)
T PRK03612 363 AFNWL------RKL-AEKFDVIIVDLPDPS-N---PAL--GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIE 429 (521)
T ss_pred HHHHH------HhC-CCCCCEEEEeCCCCC-C---cch--hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHH
Confidence 76521 122 358999999964221 1 000 001123567888999999999998643 222345566
Q ss_pred HHHHcc-CCeee
Q 029488 178 CQVNKM-LVKTP 188 (192)
Q Consensus 178 ~~l~~~-f~~v~ 188 (192)
..+++. | .|.
T Consensus 430 ~~l~~~gf-~v~ 440 (521)
T PRK03612 430 ATLEAAGL-ATT 440 (521)
T ss_pred HHHHHcCC-EEE
Confidence 677776 6 443
No 139
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.79 E-value=3.3e-08 Score=78.97 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=66.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.++.+|||||||+|.++..++.+. ..+|+++|+++.. ...++.++.+|+.+.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--------------a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~--- 114 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--------------AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF--- 114 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--------------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---
Confidence 457899999999999998765553 3699999999842 234678888887542
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
+. . ...+||+|++|+++.. |. .. . ....+.. ..+|+|+|.+++......+
T Consensus 115 --l~-~-~~~~fDlV~~DPPy~~-g~---~~----~-~l~~l~~-~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 115 --LA-Q-PGTPHNVVFVDPPFRK-GL---LE----E-TINLLED-NGWLADEALIYVESEVENG 164 (199)
T ss_pred --Hh-h-cCCCceEEEECCCCCC-Ch---HH----H-HHHHHHH-CCCcCCCcEEEEEecCCCC
Confidence 11 1 2347999999987431 11 00 0 1112221 3568999999886554333
No 140
>PRK06202 hypothetical protein; Provisional
Probab=98.78 E-value=7.5e-08 Score=78.14 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=63.2
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCceEEecccCCchhHHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~~v~~~~~Di~~~~~~~~~ 111 (192)
.++.+|||+|||+|.++..+++..+. .++..+|+|+|+++.. ..+++.+...+..+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~---------~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARR---------DGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHh---------CCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc-----
Confidence 45779999999999999998875420 0135699999999842 1235556555544321
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.++++||+|+|+...+... +. ....+++.+.++++ |.+++
T Consensus 125 ---~~~~~fD~V~~~~~lhh~~----d~-----~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 125 ---AEGERFDVVTSNHFLHHLD----DA-----EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ---ccCCCccEEEECCeeecCC----hH-----HHHHHHHHHHHhcC--eeEEE
Confidence 1346999999987643211 11 12357788888887 44444
No 141
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=79.02 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCce-EEecccCCchhHHHH
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVI-QVQGDITNARTAEVV 111 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~-~~~~Di~~~~~~~~~ 111 (192)
.||++|||||.--.+.-+. |.++|+++|.++. ...+++. |+.++..+...
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--------------p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~---- 140 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--------------PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ---- 140 (252)
T ss_pred ceEEecccCCCCcccccCC--------------CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc----
Confidence 5799999999877666544 6799999999983 1234666 77887777431
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~ 185 (192)
+++.++|.|++-... + ..+. ...+|.+..++|||||.+++-.+-...+.-+-..++..++
T Consensus 141 ---l~d~s~DtVV~TlvL---C--Sve~------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 141 ---LADGSYDTVVCTLVL---C--SVED------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAE 200 (252)
T ss_pred ---cccCCeeeEEEEEEE---e--ccCC------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhc
Confidence 356899999987521 1 1111 1367889999999999999977766655555555555544
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.77 E-value=1.6e-08 Score=80.57 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=73.0
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
...+||+|||.|.|...+|... |...++|+|+... ..+.|+.++++|....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-------------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~----- 79 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-------------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL----- 79 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-------------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-----
T ss_pred CCeEEEecCCCCHHHHHHHHHC-------------CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-----
Confidence 3389999999999999999998 5899999999973 2468999999999873
Q ss_pred HHhhcCCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+...++++++|-|....+ |+..- .|....-.....+....++|+|||.+.+++
T Consensus 80 l~~~~~~~~v~~i~i~FPDPWpK~----rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 80 LRRLFPPGSVDRIYINFPDPWPKK----RHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHSTTTSEEEEEEES-----SG----GGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcccCCchheEEEeCCCCCccc----chhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 334566689999988764 22111 111111122467888899999999998865
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=98.75 E-value=1.3e-07 Score=81.63 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=81.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------------CCCCceEEecc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------------~~~~v~~~~~D 101 (192)
...++||++|||.|+.+..+++.. +..+|++||+++.. ..+++..+.+|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-------------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-------------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-------------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 346799999999999888887653 36799999999831 13577778888
Q ss_pred cCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCCh----HHHH
Q 029488 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT----SLLY 177 (192)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~----~~l~ 177 (192)
..+.- .. .++.||+|++|.+-. .+.. .........+..+.+.|+|||.|++..-..... ..+.
T Consensus 216 a~~fL------~~-~~~~YDVIIvDl~DP-~~~~-----~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~ 282 (374)
T PRK01581 216 AKEFL------SS-PSSLYDVIIIDFPDP-ATEL-----LSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIG 282 (374)
T ss_pred HHHHH------Hh-cCCCccEEEEcCCCc-cccc-----hhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHH
Confidence 87531 11 245899999996421 1110 111112467888999999999998864333222 2344
Q ss_pred HHHHccCCeeeEE
Q 029488 178 CQVNKMLVKTPVY 190 (192)
Q Consensus 178 ~~l~~~f~~v~~~ 190 (192)
..++..|..|..|
T Consensus 283 ~tL~~af~~v~~y 295 (374)
T PRK01581 283 NTIEHAGLTVKSY 295 (374)
T ss_pred HHHHHhCCceEEE
Confidence 5666666655543
No 144
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.75 E-value=2.3e-07 Score=75.24 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=88.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CC------CCceEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI------EGVIQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------~~------~~v~~~~~Di~~~~ 106 (192)
+.|.+|||.|.|=|-.+...+++. ...|+.++.+|.. +. .++..+.||+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e-- 196 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE-- 196 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--------------CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--
Confidence 358999999999999999999884 4599999988731 11 256788999877
Q ss_pred hHHHHHhhcCCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC------CC-hHHHHH
Q 029488 107 TAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG------KD-TSLLYC 178 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~------~~-~~~l~~ 178 (192)
+.+.+++.+||.|+.|++ ++..| + --.+....+.+++|||||.+...+-.+ .+ ...+..
T Consensus 197 ----~V~~~~D~sfDaIiHDPPRfS~Ag-----e----LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~ 263 (287)
T COG2521 197 ----VVKDFDDESFDAIIHDPPRFSLAG-----E----LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAE 263 (287)
T ss_pred ----HHhcCCccccceEeeCCCccchhh-----h----HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHH
Confidence 456688889999999985 33222 0 112456788899999999999877543 34 346666
Q ss_pred HHHcc-CCeeeE
Q 029488 179 QVNKM-LVKTPV 189 (192)
Q Consensus 179 ~l~~~-f~~v~~ 189 (192)
.|+.. |..|..
T Consensus 264 RLr~vGF~~v~~ 275 (287)
T COG2521 264 RLRRVGFEVVKK 275 (287)
T ss_pred HHHhcCceeeee
Confidence 77765 776654
No 145
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.70 E-value=2.4e-07 Score=77.83 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------C--CC-ceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I--EG-VIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---------~--~~-v~~~~~Di~~~~~~ 108 (192)
.|++|||+|||.|-++-.++.+. ...|+|+|.++... + .. +..+..-+.+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--------------A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~---- 176 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--------------AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED---- 176 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--------------CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh----
Confidence 48999999999999999999884 57899999887421 1 11 1111111111
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec--CCC---------------
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF--RGK--------------- 171 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~--~~~--------------- 171 (192)
++. .+.||.|+|=|-.. |..+. ...|.+....|+|||.+++.+. ++.
T Consensus 177 --Lp~---~~~FDtVF~MGVLY----Hrr~P-------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~ 240 (315)
T PF08003_consen 177 --LPN---LGAFDTVFSMGVLY----HRRSP-------LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMR 240 (315)
T ss_pred --ccc---cCCcCEEEEeeehh----ccCCH-------HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCC
Confidence 111 36899999977432 22222 2467788899999999998653 111
Q ss_pred ------ChHHHHHHHHcc-CCeeeEE
Q 029488 172 ------DTSLLYCQVNKM-LVKTPVY 190 (192)
Q Consensus 172 ------~~~~l~~~l~~~-f~~v~~~ 190 (192)
+..-|...++++ |+.|+++
T Consensus 241 nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 241 NVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred ceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 334455556555 8888775
No 146
>PLN02476 O-methyltransferase
Probab=98.66 E-value=2.9e-07 Score=76.96 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=72.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
.+.++|||+|+++|..+.+++...+ +.+.|+++|.++.. .+ ++++++.||..+.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~------------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-- 182 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP------------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-- 182 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 3578999999999999999998875 57899999999842 22 3688888988652
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+......++||+|+.|+.. .+ ....+..+.+.|+|||.+++-
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K--------~~------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK--------RM------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH--------HH------HHHHHHHHHHhcCCCcEEEEe
Confidence 1122111123589999999742 11 135677888999999999874
No 147
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.65 E-value=4e-08 Score=77.72 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=52.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++++|||+|||+|.++..+++.. ...++|+|+++.. ...++.++.+|+.+.. ..
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--------------~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l------~~ 70 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--------------QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGL------EA 70 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--------------CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcc------cc
Confidence 4678899999999999999888764 3678999999732 1246778888876521 01
Q ss_pred cCCCcccEEEeCCCC
Q 029488 115 FDGCKADLVVCDGAP 129 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~ 129 (192)
+++++||+|++....
T Consensus 71 ~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 71 FPDKSFDYVILSQTL 85 (194)
T ss_pred cCCCCcCEEEEhhHh
Confidence 345689999998654
No 148
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.65 E-value=1.5e-07 Score=76.20 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=65.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----------CCCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----------~~~v~~~~~Di~~~~~~~ 109 (192)
.++.+|||+|||+|.++..+++.. ..|+++|+++... ..++.+...|..+.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 107 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---------------ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL---- 107 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---------------CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh----
Confidence 468899999999999999888752 5899999997421 11344555555432
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
... .++.||+|++........ +. ..++..+.++|+|||.+++..+
T Consensus 108 --~~~-~~~~fD~Ii~~~~l~~~~----~~-------~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 108 --AAE-HPGQFDVVTCMEMLEHVP----DP-------ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred --hhh-cCCCccEEEEhhHhhccC----CH-------HHHHHHHHHHcCCCcEEEEEec
Confidence 111 346899999875432211 11 2467889999999999998654
No 149
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.65 E-value=8.1e-08 Score=77.35 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=73.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~ 109 (192)
+++|.+||-||+++|....++++..+ +.+.|+||+.+|.. ..+|+..+-+|.+.+....
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg------------~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG------------PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT------------TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccC------------CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 58999999999999999999999997 78999999999831 2479988999999876532
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+- ..+|+|.+|.+- +++. ..+...+...||+||.|++.+
T Consensus 139 ----~lv-~~VDvI~~DVaQ-------p~Qa------~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 139 ----MLV-EMVDVIFQDVAQ-------PDQA------RIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp ----TTS---EEEEEEE-SS-------TTHH------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----ccc-ccccEEEecCCC-------hHHH------HHHHHHHHhhccCCcEEEEEE
Confidence 233 399999999752 1221 245677889999999998755
No 150
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.64 E-value=2.3e-07 Score=74.42 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~ 109 (192)
++.+|||+|||+|.++..+++.. ..++++|+++.. ...++.+..+|+.+..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--- 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---------------ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA--- 106 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---------------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---
Confidence 47899999999999999888753 469999998731 1124566666665421
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.. ...+||+|++....+... + ....+..+.++|+|||.+++..+
T Consensus 107 ---~~-~~~~~D~i~~~~~l~~~~----~-------~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 107 ---EK-GAKSFDVVTCMEVLEHVP----D-------PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ---cC-CCCCccEEEehhHHHhCC----C-------HHHHHHHHHHhcCCCcEEEEEec
Confidence 11 135899999875432111 1 13567888999999999987654
No 151
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.5e-07 Score=74.06 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=69.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~ 107 (192)
+++|++||++|||+|--+..|++.. ++|+++|+.+. ..++|+.+.++|-..-.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~---------------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~- 133 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV---------------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW- 133 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh---------------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-
Confidence 3789999999999999999999996 49999999873 23568999999997732
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
-+..+||.|+..++.... + .....-||+||.+++-+-
T Consensus 134 -------~~~aPyD~I~Vtaaa~~v----P-------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 -------PEEAPYDRIIVTAAAPEV----P-------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -------CCCCCcCEEEEeeccCCC----C-------------HHHHHhcccCCEEEEEEc
Confidence 234799999998753311 1 123578999999998664
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.63 E-value=8.3e-07 Score=75.72 Aligned_cols=130 Identities=13% Similarity=0.133 Sum_probs=76.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCC-CceEEe-cccCCch
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIE-GVIQVQ-GDITNAR 106 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~-~v~~~~-~Di~~~~ 106 (192)
++.++||||||+|.....++.+. +..+++|+|+++.. .+. ++.+.. .|..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-------------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~-- 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-------------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA-- 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-------------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--
Confidence 45799999999999999998876 36899999999842 121 343332 22222
Q ss_pred hHHHHHhh--cCCCcccEEEeCCCCCCCCCcccc----HHHHH--------------------------HHHHHHHHHHH
Q 029488 107 TAEVVIRH--FDGCKADLVVCDGAPDVTGLHDMD----EFVQS--------------------------QLILAGLTVVT 154 (192)
Q Consensus 107 ~~~~~~~~--~~~~~~DlV~~d~~~~~~g~~~~~----~~~~~--------------------------~l~~~~l~~a~ 154 (192)
+... .+++.||+|+||+++......... ..... ........+..
T Consensus 179 ----i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~ 254 (321)
T PRK11727 179 ----IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK 254 (321)
T ss_pred ----hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH
Confidence 1121 135689999999987654332110 00000 01122344445
Q ss_pred HhcccCCEEEEEecCCCChHHHHHHHHcc-CCeeeE
Q 029488 155 HVLKEGGKFIAKIFRGKDTSLLYCQVNKM-LVKTPV 189 (192)
Q Consensus 155 ~~LkpgG~~v~k~~~~~~~~~l~~~l~~~-f~~v~~ 189 (192)
..++..|.|.+.+....+...++..|++. ...+.+
T Consensus 255 ~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 255 AFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred HHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEE
Confidence 55556666666566666777777777764 334443
No 153
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.63 E-value=5.6e-07 Score=79.60 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=70.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
+++.+|||+|||+|.++..++... .+|+|+|+++.. .+.+++++.+|+.+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-- 353 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-- 353 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH--
Confidence 567899999999999999999774 589999999831 2467889999986521
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHH
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQV 180 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l 180 (192)
... ...+..||+|+.|++-. |. . ..++.. ..-++|++.+++ .+++.+...-+..+
T Consensus 354 ~~~--~~~~~~~D~vi~dPPr~--G~---~--------~~~l~~-l~~l~~~~ivyv-sc~p~tlard~~~l 408 (431)
T TIGR00479 354 PKQ--PWAGQIPDVLLLDPPRK--GC---A--------AEVLRT-IIELKPERIVYV-SCNPATLARDLEFL 408 (431)
T ss_pred HHH--HhcCCCCCEEEECcCCC--CC---C--------HHHHHH-HHhcCCCEEEEE-cCCHHHHHHHHHHH
Confidence 111 12245799999998632 21 1 122332 234889886666 45555443334344
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=75.75 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=75.1
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~~~ 111 (192)
..+||||||.|.|...+|++. |...++|||+... ..++|+..+.+|... +
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-------------P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~------~ 110 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-------------PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE------V 110 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-------------CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH------H
Confidence 589999999999999999998 5889999999972 235588888888876 3
Q ss_pred Hhhc-CCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 112 IRHF-DGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 112 ~~~~-~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+.+ +++++|-|..+.+ |+..-.+ ....-.+...+....+.|||||.|.+++
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH----~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRH----HKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccc----cccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 3444 4459999988765 3322211 1111123567888999999999999966
No 155
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.61 E-value=1.8e-07 Score=75.24 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=62.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
.++.+|||+|||+|.++.+++... .+|+|+|+++.. .. .++.+..+|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~---------------~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG---------------AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC---------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--
Confidence 458899999999999999998752 599999999841 11 3678888888663
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+ .+||+|++...... .. ......++..+.+++++++.+.+
T Consensus 117 --------~-~~fD~ii~~~~l~~-----~~----~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 --------C-GEFDIVVCMDVLIH-----YP----ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --------C-CCcCEEEEhhHHHh-----CC----HHHHHHHHHHHHHHhCCCEEEEE
Confidence 2 58999998543211 00 11123466777788887655544
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.60 E-value=6.9e-07 Score=79.37 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=64.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.. ...++.++.+|+.+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~- 359 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT- 359 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh-
Confidence 578899999999999999999874 599999999842 24578899999865310
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
. ..+.+.+||+|++|++.. |. . ..+. ...-++|++.+++..
T Consensus 360 -~--~~~~~~~fD~Vi~dPPr~--g~---~---------~~~~-~l~~~~~~~ivyvSC 400 (443)
T PRK13168 360 -D--QPWALGGFDKVLLDPPRA--GA---A---------EVMQ-ALAKLGPKRIVYVSC 400 (443)
T ss_pred -h--hhhhcCCCCEEEECcCCc--Ch---H---------HHHH-HHHhcCCCeEEEEEe
Confidence 0 012345799999998632 21 1 1222 223368988877743
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.59 E-value=5.8e-07 Score=76.44 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~ 109 (192)
++.+|||+|||+|.++..++.. ..+|+|+|+++.. .+++++++.+|+.+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---------------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~--- 234 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---------------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA--- 234 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---
Confidence 4689999999999999999975 3699999999831 2457889999986531
Q ss_pred HHHhhcCCCcccEEEeCCC
Q 029488 110 VVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~ 128 (192)
.. ....||+|++|++
T Consensus 235 ---~~-~~~~~D~Vv~dPP 249 (315)
T PRK03522 235 ---TA-QGEVPDLVLVNPP 249 (315)
T ss_pred ---Hh-cCCCCeEEEECCC
Confidence 11 1347999999976
No 158
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=7e-07 Score=73.94 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=68.8
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEE----ecccCCc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQV----QGDITNA 105 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~----~~Di~~~ 105 (192)
+..+||+|||+|.++..++...+ .+.|+|+|.++.+ .+. ++..+ ..|..++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-------------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-------------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-------------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc
Confidence 45899999999999999999884 7999999999853 122 33333 3444443
Q ss_pred hhHHHHHhhcCCCcccEEEeCCCCCCCC-CccccH----HHH----------HHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 106 RTAEVVIRHFDGCKADLVVCDGAPDVTG-LHDMDE----FVQ----------SQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~DlV~~d~~~~~~g-~~~~~~----~~~----------~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.. ...++.|+++||++.-... ....+. +.. .....-.+..|.++|+|||.+.+.+-
T Consensus 216 ~~-------l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 216 HP-------LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cc-------cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 21 3467999999998631110 000000 000 01122347788999999999988654
No 159
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.56 E-value=4.2e-07 Score=70.18 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=83.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCceEEecccCCchhHHHHHh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~------~~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
..|..||++|.|+|-++..++.+.- +...+++++.++. +..+++.+++||..+.++. + .
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv------------~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~--l-~ 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGV------------RPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT--L-G 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCC------------CccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH--H-h
Confidence 4578999999999999999888864 6789999999984 3457888999999886531 1 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHH
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~ 175 (192)
...+..||.|+|-.+.- +. ..+...+.++.+...|.+||.++...+.+.+...
T Consensus 112 e~~gq~~D~viS~lPll-----~~----P~~~~iaile~~~~rl~~gg~lvqftYgp~s~v~ 164 (194)
T COG3963 112 EHKGQFFDSVISGLPLL-----NF----PMHRRIAILESLLYRLPAGGPLVQFTYGPLSPVL 164 (194)
T ss_pred hcCCCeeeeEEeccccc-----cC----cHHHHHHHHHHHHHhcCCCCeEEEEEecCCCccc
Confidence 24567999999976421 11 1122346788888999999999988877554443
No 160
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=1.9e-07 Score=75.86 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=75.0
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHHHHh
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
++|++|||.|+..-.+.+-.+ .+.-.|+++|.+|-+ ...++.....|++.++ ...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~-----------n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~----~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP-----------NNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPS----LKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCC-----------CCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchh----ccC
Confidence 899999999999999988864 134899999999842 1124555566777755 334
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCCh
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~ 173 (192)
....+++|+|++-...++.... -...++..+.++|||||.+++.-|...+.
T Consensus 139 ~~~~~svD~it~IFvLSAi~pe---------k~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSAIHPE---------KMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred CCCcCccceEEEEEEEeccChH---------HHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 4566799999887644322211 12357788999999999999987655443
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.51 E-value=3e-07 Score=73.75 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=72.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
...++||++|++.|--+.++++..+ +.++|+.+|+++.. .. .+++++.+|..+.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~------------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-- 109 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALP------------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-- 109 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTST------------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH--
T ss_pred cCCceEEEeccccccHHHHHHHhhc------------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh--
Confidence 4577999999999999999999876 67999999999841 22 4688888988753
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+....+.+.||+|+.|+.. .++ ...+..+.+.|+|||.+++-
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K--------~~y------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADK--------RNY------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTG--------GGH------HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccc--------cch------hhHHHHHhhhccCCeEEEEc
Confidence 2223222223589999999753 122 23566778999999999985
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.8e-06 Score=73.80 Aligned_cols=121 Identities=15% Similarity=0.049 Sum_probs=82.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEec-ccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQG-DITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~-Di~~~~ 106 (192)
.++|..|||=-||||++...+... ++.++|.|++... .++...+... |.++..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~---------------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM---------------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc---------------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 478999999999999999988765 4899999999621 1234444555 888753
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCcc-ccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHD-MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~-~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~ 185 (192)
+++..+|.|++|++... .. ........|...++..+..+||+||.+++-.. .....+....-|+
T Consensus 260 --------l~~~~vdaIatDPPYGr---st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~ 324 (347)
T COG1041 260 --------LRDNSVDAIATDPPYGR---STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFK 324 (347)
T ss_pred --------CCCCccceEEecCCCCc---ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCce
Confidence 56667999999986321 11 11111345678899999999999999998554 2222334445555
Q ss_pred eeeE
Q 029488 186 KTPV 189 (192)
Q Consensus 186 ~v~~ 189 (192)
-++.
T Consensus 325 v~~~ 328 (347)
T COG1041 325 VLGR 328 (347)
T ss_pred EEEE
Confidence 4443
No 163
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=7.2e-07 Score=70.16 Aligned_cols=67 Identities=24% Similarity=0.208 Sum_probs=54.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.|+.|+|||||||.++..++-.. ..+|+|+|+.|.+ ..-++.++..|+++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--------------a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~----- 105 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--------------ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF----- 105 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--------------CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----
Confidence 47789999999999999988774 5899999999852 123688999999884
Q ss_pred HHhhcCCCcccEEEeCCCCCCC
Q 029488 111 VIRHFDGCKADLVVCDGAPDVT 132 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~ 132 (192)
...+|.|+.|+++...
T Consensus 106 ------~~~~dtvimNPPFG~~ 121 (198)
T COG2263 106 ------RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred ------CCccceEEECCCCccc
Confidence 3589999999987544
No 164
>PLN02823 spermine synthase
Probab=98.44 E-value=2.4e-06 Score=73.46 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=84.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCCc
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~~ 105 (192)
..++||.+|+|.|+.+..+++.. +..+|+.||+++.. ..+++..+.+|..+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-------------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-------------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-------------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 46799999999999999888753 35789999999831 136788888888763
Q ss_pred hhHHHHHhhcCCCcccEEEeCCCCCC-CCCccccHHHHHHHHHHHHH-HHHHhcccCCEEEEEecCC------CChHHHH
Q 029488 106 RTAEVVIRHFDGCKADLVVCDGAPDV-TGLHDMDEFVQSQLILAGLT-VVTHVLKEGGKFIAKIFRG------KDTSLLY 177 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~DlV~~d~~~~~-~g~~~~~~~~~~~l~~~~l~-~a~~~LkpgG~~v~k~~~~------~~~~~l~ 177 (192)
- +. ..++||+|++|..-.. .+.. .+ -.....++ .+.+.|+|||.+++..-.. .....+.
T Consensus 170 L------~~-~~~~yDvIi~D~~dp~~~~~~--~~----Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~ 236 (336)
T PLN02823 170 L------EK-RDEKFDVIIGDLADPVEGGPC--YQ----LYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIY 236 (336)
T ss_pred H------hh-CCCCccEEEecCCCccccCcc--hh----hccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHH
Confidence 1 11 2468999999963211 1110 00 01134566 7889999999998754221 1245677
Q ss_pred HHHHccCCeeeEE
Q 029488 178 CQVNKMLVKTPVY 190 (192)
Q Consensus 178 ~~l~~~f~~v~~~ 190 (192)
..++..|..|..+
T Consensus 237 ~tl~~vF~~v~~y 249 (336)
T PLN02823 237 NTLRQVFKYVVPY 249 (336)
T ss_pred HHHHHhCCCEEEE
Confidence 7888999988765
No 165
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.44 E-value=8.3e-07 Score=71.39 Aligned_cols=63 Identities=27% Similarity=0.291 Sum_probs=47.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
.++.+|||+|||+|.++..+++.. ..|+|+|+++.. .. .++.+..+|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---------------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---------------AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 467899999999999999998763 469999999731 11 357778888432
Q ss_pred HHHHHhhcCCCcccEEEeCCC
Q 029488 108 AEVVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~ 128 (192)
...+||+|++...
T Consensus 124 --------~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 --------LLGRFDTVVCLDV 136 (230)
T ss_pred --------ccCCcCEEEEcch
Confidence 1358999998754
No 166
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.44 E-value=1.2e-06 Score=69.31 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=65.6
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~~ 108 (192)
+|.+||||+||+|+++..++.+. ...|++||.++.. .. .+++++.+|+.+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--------------a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~--- 111 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--------------AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA--- 111 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH---
Confidence 58899999999999999999884 3689999999732 12 2567788888542
Q ss_pred HHHHhhc-CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 109 EVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 109 ~~~~~~~-~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+.... ....+|+|+.|+++.. . ..+ .+ ...+.. ..+|+++|.+++....
T Consensus 112 --l~~~~~~~~~~dvv~~DPPy~~-~--~~~-----~~-l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 112 --LKFLAKKPTFDNVIYLDPPFFN-G--ALQ-----AL-LELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred --HHHhhccCCCceEEEECcCCCC-C--cHH-----HH-HHHHHH-CCCCCCCeEEEEEecC
Confidence 11111 1235899999987532 1 111 11 112222 4689999988885544
No 167
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.43 E-value=6.9e-07 Score=72.67 Aligned_cols=138 Identities=13% Similarity=0.059 Sum_probs=78.2
Q ss_pred CCCCCCCCCChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCC-eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC
Q 029488 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79 (192)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~-~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~ 79 (192)
|++++...++.|.. +| ..|..-=.-++.. +.++. .++|+|||+|--+..++... .
T Consensus 1 ~~~~~~~~a~~Y~~-AR-P~YPtdw~~~ia~-------~~~~h~~a~DvG~G~Gqa~~~iae~~---------------k 56 (261)
T KOG3010|consen 1 MAKLFDKQAADYLN-AR-PSYPTDWFKKIAS-------RTEGHRLAWDVGTGNGQAARGIAEHY---------------K 56 (261)
T ss_pred CcccccccHHHHhh-cC-CCCcHHHHHHHHh-------hCCCcceEEEeccCCCcchHHHHHhh---------------h
Confidence 67778888888852 33 3454211111221 23343 89999999995556666664 6
Q ss_pred eEEEEeCCCCC-----CCCCceE-------EecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHH
Q 029488 80 LIVAIDLQPMA-----PIEGVIQ-------VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147 (192)
Q Consensus 80 ~V~gvD~~~~~-----~~~~v~~-------~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~ 147 (192)
+|+|+|+++.+ ..++++. ...+..++. -.++++|+|+|--+.|.. +. .
T Consensus 57 ~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~--------g~e~SVDlI~~Aqa~HWF-----dl-------e 116 (261)
T KOG3010|consen 57 EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL--------GGEESVDLITAAQAVHWF-----DL-------E 116 (261)
T ss_pred hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--------CCCcceeeehhhhhHHhh-----ch-------H
Confidence 99999999732 1222222 122222211 125799999986443321 11 3
Q ss_pred HHHHHHHHhcccCC-EEEEEecCC--CChHHHHHHHHc
Q 029488 148 AGLTVVTHVLKEGG-KFIAKIFRG--KDTSLLYCQVNK 182 (192)
Q Consensus 148 ~~l~~a~~~LkpgG-~~v~k~~~~--~~~~~l~~~l~~ 182 (192)
.+...+.++||+.| .+.+=.++. ....+....|.+
T Consensus 117 ~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r 154 (261)
T KOG3010|consen 117 RFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLR 154 (261)
T ss_pred HHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHH
Confidence 57889999999987 555444442 223444444443
No 168
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.42 E-value=1.6e-06 Score=70.54 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=71.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCce
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~---------------~~~v~ 96 (192)
.++.+||+.|||.|.-+.+|+.+. .+|+|+|+|+.+ . -.+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G---------------~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---------------VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC---------------CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 457899999999999999999883 689999999731 0 12578
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+.++|+.+..... -..+.||+|.--+.+... ...+..+-.+.+.++|+|||.+++.++.
T Consensus 107 ~~~gD~f~l~~~~-----~~~~~fD~VyDra~~~Al---------pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 107 IYVADIFNLPKIA-----NNLPVFDIWYDRGAYIAL---------PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred EEEccCcCCCccc-----cccCCcCeeeeehhHhcC---------CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 8899998853100 012479998765543321 1123345667788999999999887764
No 169
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=3.9e-06 Score=70.41 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=84.9
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCCchh
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNART 107 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~~~~ 107 (192)
++||=+|-|.|++++.+++.. +..+++.||+++.. ..|++..+.+|..+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-------------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-- 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-------------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-- 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-------------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH--
Confidence 699999999999999999886 47899999999831 146788888887663
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCC-ccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC----CCChHHHHHHHHc
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLLYCQVNK 182 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~-~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~----~~~~~~l~~~l~~ 182 (192)
.+..+. +||+|++|.... .|. .+.- ....++.+.+.|+++|.++...-+ .+........++.
T Consensus 143 ----v~~~~~-~fDvIi~D~tdp-~gp~~~Lf-------t~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~ 209 (282)
T COG0421 143 ----LRDCEE-KFDVIIVDSTDP-VGPAEALF-------TEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSR 209 (282)
T ss_pred ----HHhCCC-cCCEEEEcCCCC-CCcccccC-------CHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHh
Confidence 223333 899999997533 232 1111 135678899999999999997322 1223455557777
Q ss_pred cCCeeeEEe
Q 029488 183 MLVKTPVYF 191 (192)
Q Consensus 183 ~f~~v~~~~ 191 (192)
.|+.+..+.
T Consensus 210 vf~~~~~~~ 218 (282)
T COG0421 210 VFSIVPPYV 218 (282)
T ss_pred hccccccce
Confidence 787666543
No 170
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=70.44 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CCCC---ceEEecccCCchhHHHHHhhc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PIEG---VIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---~~~~---v~~~~~Di~~~~~~~~~~~~~ 115 (192)
+.-+||+|||+|--+..+.+.. -.++|+|+||.. ..++ -..+.+|.-.- -.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G---------------h~wiGvDiSpsML~~a~~~e~egdlil~DMG~G-------lpf 108 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG---------------HQWIGVDISPSMLEQAVERELEGDLILCDMGEG-------LPF 108 (270)
T ss_pred CcEEEEeccCCCcchheeccCC---------------ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC-------CCC
Confidence 5689999999999999997663 689999999832 1111 12344454431 124
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~ 170 (192)
+.+.||-++|-.+..+.+..+..-........+.+.+.+..|++|+..|+..+..
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 5679999999876554444333222233344677888999999999999976654
No 171
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.38 E-value=3.7e-06 Score=67.30 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=62.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~ 119 (192)
.++..|.|+|||-+..+..+. ....|...|+.... +. ++..|+.+.. +++++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~----------------~~~~V~SfDLva~n--~~--Vtacdia~vP--------L~~~s 122 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP----------------NKHKVHSFDLVAPN--PR--VTACDIANVP--------LEDES 122 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------------------S---EEEEESS-SS--TT--EEES-TTS-S----------TT-
T ss_pred CCCEEEEECCCchHHHHHhcc----------------cCceEEEeeccCCC--CC--EEEecCccCc--------CCCCc
Confidence 346799999999999885543 23589999998743 23 5678997743 46789
Q ss_pred ccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec--CCCChHHHHHHHHcc-CC
Q 029488 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF--RGKDTSLLYCQVNKM-LV 185 (192)
Q Consensus 120 ~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~--~~~~~~~l~~~l~~~-f~ 185 (192)
+|+++.-.+.... | + ...+.+|.|+|||||.|.+-.- +-.+....+..+..+ |.
T Consensus 123 vDv~VfcLSLMGT---n---~------~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 123 VDVAVFCLSLMGT---N---W------PDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK 179 (219)
T ss_dssp EEEEEEES---SS-------H------HHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred eeEEEEEhhhhCC---C---c------HHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence 9999987654321 1 1 2568899999999999987543 334566667777665 44
No 172
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.36 E-value=5.8e-06 Score=64.87 Aligned_cols=119 Identities=15% Similarity=0.026 Sum_probs=70.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~~ 107 (192)
+++..|||-.||+|++...++....... + ..... ...++|.|+++.. ... .+.+.+.|.++..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~--~-~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIP--P-LNDIN-ELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTS--T-TTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcc--c-ccccc-cccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-
Confidence 6789999999999999988887764110 0 00000 1239999999842 122 3567788888753
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHH
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 175 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~ 175 (192)
+..+.+|.|++|++. |.+.........+....+..+.++|++ ..++.+........
T Consensus 102 -------~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~ 157 (179)
T PF01170_consen 102 -------LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTSNRELEK 157 (179)
T ss_dssp -------GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEESCCCHHH
T ss_pred -------cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEECCHHHHH
Confidence 245699999999875 333333333456777889999999999 33332334344444
No 173
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.36 E-value=1.9e-06 Score=77.86 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=75.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~ 108 (192)
..+..+||+|||.|.|+..+|... |...++|+|+... ..+.|+.++.+|...
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-------------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~---- 408 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-------------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL---- 408 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-------------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH----
Confidence 346789999999999999999998 5889999999973 235677776665432
Q ss_pred HHHHhhcCCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+...++++++|-|..+.+ |+....+ ....-.....+....+.|||||.+.+++
T Consensus 409 --~~~~~~~~sv~~i~i~FPDPWpKkrh----~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 409 --ILNDLPNNSLDGIYILFPDPWIKNKQ----KKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred --HHHhcCcccccEEEEECCCCCCCCCC----ccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 345577789999988865 3322111 1111122456888899999999999865
No 174
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.35 E-value=5.5e-07 Score=71.02 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~~~ 108 (192)
+|.+||||+||+|+++..++.|. ...|+.||.++.. ... ++..+..|....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--------------A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~--- 104 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--------------AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF--- 104 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH---
T ss_pred CCCeEEEcCCccCccHHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH---
Confidence 58999999999999999988784 5899999999742 112 356667776542
Q ss_pred HHHHhh-cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHH--HHhcccCCEEEEEecCC
Q 029488 109 EVVIRH-FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFRG 170 (192)
Q Consensus 109 ~~~~~~-~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a--~~~LkpgG~~v~k~~~~ 170 (192)
+.+. ..+.+||+|..|++... ... ...++... ..+|+++|.+++.....
T Consensus 105 --l~~~~~~~~~fDiIflDPPY~~------~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 --LLKLAKKGEKFDIIFLDPPYAK------GLY-----YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --HHHHHHCTS-EEEEEE--STTS------CHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred --HHhhcccCCCceEEEECCCccc------chH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2122 24679999999987432 111 01222222 38999999999966544
No 175
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=8.3e-06 Score=63.88 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=85.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------CC--CceEEecccCCchhHHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IE--GVIQVQGDITNARTAEVV 111 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~~--~v~~~~~Di~~~~~~~~~ 111 (192)
..-++|+|||+|-.+..+++..+ +.....++|++|.+. .. ++..++.|..+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~------------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~------- 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG------------PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS------- 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC------------CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-------
Confidence 67899999999999999999987 788999999999641 12 23445555544
Q ss_pred HhhcCCCcccEEEeCCCCCCCC-CccccHHHHH---------HHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHH
Q 029488 112 IRHFDGCKADLVVCDGAPDVTG-LHDMDEFVQS---------QLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVN 181 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g-~~~~~~~~~~---------~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~ 181 (192)
.+..+++|+++-|++..... ....++.... ....+++...-.+|.|.|.|++.....-...++++.++
T Consensus 105 --~l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~ 182 (209)
T KOG3191|consen 105 --GLRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE 182 (209)
T ss_pred --hhccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence 23347999999998643221 1111222221 12345677777899999999997777777888888777
Q ss_pred cc
Q 029488 182 KM 183 (192)
Q Consensus 182 ~~ 183 (192)
..
T Consensus 183 ~~ 184 (209)
T KOG3191|consen 183 KK 184 (209)
T ss_pred hc
Confidence 64
No 176
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.32 E-value=5.7e-06 Score=72.04 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=64.0
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~ 109 (192)
++.+|||||||+|.++..++.+ ..+|+|+|+++.. .+++++++.+|+.+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---------------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~--- 294 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---------------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA--- 294 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---------------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---
Confidence 4679999999999999999854 3689999999842 2457888899986532
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
... ..+||+|+.|++-. |. + ..++..+ ..++|++.+++ .+++.+
T Consensus 295 ---~~~-~~~~D~vi~DPPr~--G~---~--------~~~l~~l-~~~~p~~ivyv-sc~p~T 338 (374)
T TIGR02085 295 ---TAQ-MSAPELVLVNPPRR--GI---G--------KELCDYL-SQMAPKFILYS-SCNAQT 338 (374)
T ss_pred ---Hhc-CCCCCEEEECCCCC--CC---c--------HHHHHHH-HhcCCCeEEEE-EeCHHH
Confidence 111 23699999997632 31 1 1222222 34789887777 444443
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.32 E-value=2.9e-06 Score=68.60 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=71.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEe-cccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQ-GDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~-~Di~~~~ 106 (192)
.+.+++|++|++.|--+.+++.-.+ +.++++.+|+++.. .. ++++.+. +|..+.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~------------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~- 124 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALP------------DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV- 124 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCC------------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-
Confidence 4678999999999999999999986 57899999999842 22 3455666 465542
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+.+ ...++||+|+.|.... .....+..+.+.|||||.+++-
T Consensus 125 ----l~~-~~~~~fDliFIDadK~--------------~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 125 ----LSR-LLDGSFDLVFIDADKA--------------DYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ----HHh-ccCCCccEEEEeCChh--------------hCHHHHHHHHHHhCCCcEEEEe
Confidence 222 3357999999997532 1135678889999999999985
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.31 E-value=2.6e-06 Score=69.00 Aligned_cols=116 Identities=17% Similarity=0.079 Sum_probs=76.0
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCc
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGV 95 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~---------------~~~v 95 (192)
.+++.+||..|||.|.-..+|+++. .+|+|+|+++.+ . ..++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G---------------~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG---------------HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT---------------EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC---------------CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 3567899999999999999999883 699999999731 0 1256
Q ss_pred eEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCE--EEEEecCCC--
Q 029488 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK--FIAKIFRGK-- 171 (192)
Q Consensus 96 ~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~--~v~k~~~~~-- 171 (192)
++.++|+.+.... ..++||+|.=-.++...... +...-.+.+.++|||||. +++..+...
T Consensus 100 ~~~~gDfF~l~~~-------~~g~fD~iyDr~~l~Alpp~---------~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~ 163 (218)
T PF05724_consen 100 TIYCGDFFELPPE-------DVGKFDLIYDRTFLCALPPE---------MRERYAQQLASLLKPGGRGLLITLEYPQGEM 163 (218)
T ss_dssp EEEES-TTTGGGS-------CHHSEEEEEECSSTTTS-GG---------GHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred EEEEcccccCChh-------hcCCceEEEEecccccCCHH---------HHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence 7889999985421 11479999976654332211 123445678899999999 444344321
Q ss_pred -------ChHHHHHHHHccCC
Q 029488 172 -------DTSLLYCQVNKMLV 185 (192)
Q Consensus 172 -------~~~~l~~~l~~~f~ 185 (192)
+..++..++...|+
T Consensus 164 ~GPPf~v~~~ev~~l~~~~f~ 184 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFGPGFE 184 (218)
T ss_dssp SSSS----HHHHHHHHTTTEE
T ss_pred CCcCCCCCHHHHHHHhcCCcE
Confidence 34566667766665
No 179
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.30 E-value=1.9e-06 Score=73.35 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=68.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~~ 109 (192)
.++.|||+|||+|..+-.+++.. ..+|+||+-+.|+. .++++.+.|-+.+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--------------A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--------------AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE--- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--------------cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc---
Confidence 47899999999999999999884 68999999998742 246778888887754
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+| +++|+|++-+. |..-. ....++....|+++|||.|.+.=
T Consensus 240 -----LP-Ek~DviISEPM----G~mL~-----NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 240 -----LP-EKVDVIISEPM----GYMLV-----NERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred -----Cc-hhccEEEeccc----hhhhh-----hHHHHHHHHHHHhhcCCCCcccC
Confidence 34 49999999752 21111 11223445568899999999754
No 180
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.29 E-value=2.1e-06 Score=69.95 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=77.5
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~ 109 (192)
++||.+||-||+++|.-....++.++ |.+.|+||+.++.. ..+|+..+..|.+.+..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG------------peG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~K-- 219 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG------------PEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAK-- 219 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC------------CCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchh--
Confidence 58999999999999999999999998 89999999999853 23688888889887643
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
..... ..+|+|++|.+.. ++. ..+...|..+||+||.|++.+-
T Consensus 220 -YRmlV--gmVDvIFaDvaqp-------dq~------RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 220 -YRMLV--GMVDVIFADVAQP-------DQA------RIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred -eeeee--eeEEEEeccCCCc-------hhh------hhhhhhhhhhhccCCeEEEEEe
Confidence 21222 3899999997532 221 2334467899999999998764
No 181
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.28 E-value=7.3e-06 Score=69.87 Aligned_cols=62 Identities=19% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C----------CCCceEEecccCC
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----------IEGVIQVQGDITN 104 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~----------~~~v~~~~~Di~~ 104 (192)
++.+|||+|||+|.++..++++. .+|+|+|+++.. . ..++.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g---------------~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG---------------AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---------------CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 57899999999999999999762 699999999831 0 1234566666543
Q ss_pred chhHHHHHhhcCCCcccEEEeCCC
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~ 128 (192)
+ ++.||+|+|...
T Consensus 209 ----------l-~~~fD~Vv~~~v 221 (315)
T PLN02585 209 ----------L-SGKYDTVTCLDV 221 (315)
T ss_pred ----------c-CCCcCEEEEcCE
Confidence 1 358999998653
No 182
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.27 E-value=1.3e-05 Score=65.33 Aligned_cols=96 Identities=25% Similarity=0.333 Sum_probs=70.1
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
+.+..+|||||.|.|.++..+++.. |..+++..|+-... ..++++++.||+.++
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-------------P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~--------- 155 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-------------PNLRATVFDLPEVIEQAKEADRVEFVPGDFFDP--------- 155 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-------------TTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-------------CCCcceeeccHhhhhccccccccccccccHHhh---------
Confidence 3566799999999999999999998 58899999985422 257899999999853
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC--CEEEEEe
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG--GKFIAKI 167 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg--G~~v~k~ 167 (192)
+|. +|+++..--. +++.. ..+..+|+.+.+.|+|| |.+++..
T Consensus 156 ~P~--~D~~~l~~vL-----h~~~d----~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 156 LPV--ADVYLLRHVL-----HDWSD----EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp CSS--ESEEEEESSG-----GGS-H----HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcc--ccceeeehhh-----hhcch----HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 344 9999875322 23332 23357889999999999 9998764
No 183
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.26 E-value=8.4e-06 Score=67.15 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=85.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~ 104 (192)
...++||=||-|.|+.+..+++.. +..+|+.||++|.. ..+++..+.+|...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-------------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~ 141 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-------------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK 141 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-------------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-------------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH
Confidence 357899999999999999998664 35799999999841 13688888888876
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC----hHHHHHHH
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD----TSLLYCQV 180 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~----~~~l~~~l 180 (192)
. .+...+++||+|+.|..-. .+.. .. -.....++.+.+.|+|||.+++..-.... ...+...+
T Consensus 142 ~------l~~~~~~~yDvIi~D~~dp-~~~~-~~-----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl 208 (246)
T PF01564_consen 142 F------LKETQEEKYDVIIVDLTDP-DGPA-PN-----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTL 208 (246)
T ss_dssp H------HHTSSST-EEEEEEESSST-TSCG-GG-----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHH
T ss_pred H------HHhccCCcccEEEEeCCCC-CCCc-cc-----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHH
Confidence 3 2223333899999997531 1111 00 11235678899999999999987643332 34556688
Q ss_pred HccCCeeeEEe
Q 029488 181 NKMLVKTPVYF 191 (192)
Q Consensus 181 ~~~f~~v~~~~ 191 (192)
+..|..|..+.
T Consensus 209 ~~~F~~v~~~~ 219 (246)
T PF01564_consen 209 RSVFPQVKPYT 219 (246)
T ss_dssp HTTSSEEEEEE
T ss_pred HHhCCceEEEE
Confidence 88999877653
No 184
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.25 E-value=1.8e-06 Score=69.04 Aligned_cols=89 Identities=26% Similarity=0.307 Sum_probs=58.7
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~ 106 (192)
+++|..|+|+.||-|.|+..++... +...|+|+|++|.+ ... ++..+++|..+..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-------------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-------------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--------------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-------------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 5789999999999999999999854 36889999999842 223 4678899988731
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
+...+|-|+++.+... ...+..++..+|+||.+.
T Consensus 166 ---------~~~~~drvim~lp~~~---------------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 ---------PEGKFDRVIMNLPESS---------------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------TT-EEEEEE--TSSG---------------GGGHHHHHHHEEEEEEEE
T ss_pred ---------CccccCEEEECChHHH---------------HHHHHHHHHHhcCCcEEE
Confidence 2569999999875321 124566888999998753
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.24 E-value=4.9e-06 Score=68.61 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=70.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~ 108 (192)
+.++||++|++.|--+.+++...+ +.++|+.+|.++.. . .++++++.||..+. .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~------------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~--L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP------------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV--L 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH--H
Confidence 467999999999999999998875 67899999999841 2 24688888987552 2
Q ss_pred HHHHhhc-CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 109 EVVIRHF-DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 109 ~~~~~~~-~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..+.... ..++||+|+.|+... .+ ...+..+.+.|+|||.+++-
T Consensus 145 ~~l~~~~~~~~~fD~iFiDadK~--------~Y------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDADKD--------NY------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHhccccCCcccEEEecCCHH--------Hh------HHHHHHHHHhcCCCeEEEEc
Confidence 2221110 125899999997421 11 34567778999999999874
No 186
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.24 E-value=3.6e-06 Score=69.61 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=53.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~ 109 (192)
+.++++|||+|||+|.++..++++. .+|+|+|+++.. ..+++.++.+|+.+..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~---------------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~--- 88 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA---------------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD--- 88 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC---
Confidence 3578999999999999999999883 589999999731 1357889999998743
Q ss_pred HHHhhcCCCcccEEEeCCCCC
Q 029488 110 VVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~ 130 (192)
+ ..+|.|++|.+.+
T Consensus 89 -----~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 -----L--PEFNKVVSNLPYQ 102 (258)
T ss_pred -----c--hhceEEEEcCCcc
Confidence 1 2579999998754
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.23 E-value=5.7e-06 Score=72.29 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+.+|||++||+|.++..++...+ ...|+++|+++.. .+.++++.++|....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-------------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~----- 119 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-------------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL----- 119 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-----
Confidence 46899999999999999988763 4689999999842 234455666776442
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+.. ...||+|+.|+. |.. ...+..+.+.+++||.+++..
T Consensus 120 l~~---~~~fD~V~lDP~----Gs~-----------~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 120 LHE---ERKFDVVDIDPF----GSP-----------APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred Hhh---cCCCCEEEECCC----CCc-----------HHHHHHHHHHhcCCCEEEEEe
Confidence 111 357999999973 211 134566788899999999863
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.21 E-value=7.2e-06 Score=69.27 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=55.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~ 110 (192)
++|..+||++||.|+.|..+++..+ +.++|+|+|.+|.. ...+++++.+|..+...
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~------------~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~--- 82 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLG------------PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE--- 82 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCC------------CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH---
Confidence 6788999999999999999999975 57899999999842 12478889998887432
Q ss_pred HHhhcCC--CcccEEEeCC
Q 029488 111 VIRHFDG--CKADLVVCDG 127 (192)
Q Consensus 111 ~~~~~~~--~~~DlV~~d~ 127 (192)
.+++ .++|.|+.|.
T Consensus 83 ---~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 83 ---VLAEGLGKVDGILLDL 98 (296)
T ss_pred ---HHHcCCCccCEEEECC
Confidence 2222 3799999996
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.19 E-value=1.1e-05 Score=66.36 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=50.8
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++.+|||+|||+|.++..++++. ..|+++|+++.. ..+++.++.+|+.+....
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---------------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 568899999999999999999885 369999999731 135788899999875421
Q ss_pred HHhhcCCCccc---EEEeCCCC
Q 029488 111 VIRHFDGCKAD---LVVCDGAP 129 (192)
Q Consensus 111 ~~~~~~~~~~D---lV~~d~~~ 129 (192)
.+| +|+++.+.
T Consensus 91 --------~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --------DFPKQLKVVSNLPY 104 (253)
T ss_pred --------HcCCcceEEEcCCh
Confidence 344 99998764
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.18 E-value=5.9e-06 Score=70.50 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCC-ceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG-VIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~-v~~~~~Di~~~~~~~ 109 (192)
.++.|||+|||+|..+...|+.. ..+|+|||-+.+. ...+ +++++|.+.+.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--------------A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~--- 122 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--------------ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE--- 122 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--------------cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe---
Confidence 58899999999999999999884 5899999999753 1233 677888887753
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
+|..++|.|+|-.. |..-. ...+....|-.=-++|+|||.++
T Consensus 123 -----LP~eKVDiIvSEWM----Gy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 -----LPVEKVDIIVSEWM----GYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -----cCccceeEEeehhh----hHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 34569999999642 21111 11122233332238999999974
No 191
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.8e-05 Score=62.93 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=74.5
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~ 109 (192)
+++|.+||-||+++|.-...+++..+ .+.|+||+.+|- ...+|+..+.+|.+.++...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-------------~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-------------EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-------------CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 47899999999999999999999984 799999999983 12468888999999887543
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+ - ..+|+|..|.+- +++. ..+...|...||+||+.++
T Consensus 141 ~~----V-e~VDviy~DVAQ-------p~Qa------~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 141 HL----V-EKVDVIYQDVAQ-------PNQA------EILADNAEFFLKKGGYVVI 178 (231)
T ss_pred hh----c-ccccEEEEecCC-------chHH------HHHHHHHHHhcccCCeEEE
Confidence 32 2 379999999751 1111 2356678899999997654
No 192
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.16 E-value=1.9e-05 Score=68.46 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=50.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+.++||++||+|.++..+++.. .+|+|+|+++.. .+.+++++.+|+.+.- ..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l--~~ 269 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---------------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT--QA 269 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH--HH
Confidence 3579999999999999888764 589999999831 2457888999986531 11
Q ss_pred HHhhc----------CCCcccEEEeCCC
Q 029488 111 VIRHF----------DGCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~----------~~~~~DlV~~d~~ 128 (192)
+.... .+..||+|+.|++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCC
Confidence 11100 0225899999987
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.15 E-value=5e-06 Score=69.32 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=52.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C--CCCceEEecccCCchhHHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P--IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~--~~~v~~~~~Di~~~~~~~~~ 111 (192)
.++.+|||+|||+|.++..++++. .+|+|+|+++.. . .+++.++++|+.+....
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~--- 102 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---------------AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS--- 102 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH---
Confidence 578899999999999999999884 399999999841 1 15788999999875421
Q ss_pred HhhcCCCcccEEEeCCCCC
Q 029488 112 IRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~ 130 (192)
+...+.|++|.+..
T Consensus 103 -----~~~~~~vv~NlPY~ 116 (272)
T PRK00274 103 -----ELQPLKVVANLPYN 116 (272)
T ss_pred -----HcCcceEEEeCCcc
Confidence 11158999997643
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.14 E-value=2.3e-06 Score=76.12 Aligned_cols=97 Identities=26% Similarity=0.297 Sum_probs=62.0
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~~ 108 (192)
++..|+|+|||+|..+..+++... ..+...+|+||+-++.+ .. .+|+++++|+++.+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~---------~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGA---------RAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTH---------HHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHH---------HhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 367899999999999876655420 00025799999999842 12 468999999999753
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
+ .++|+|+|=.. |..-..+ +..+.|..+.+.|||||.++
T Consensus 256 -------p-ekvDIIVSElL----Gsfg~nE-----l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 -------P-EKVDIIVSELL----GSFGDNE-----LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------S-S-EEEEEE-------BTTBTTT-----SHHHHHHHGGGGEEEEEEEE
T ss_pred -------C-CceeEEEEecc----CCccccc-----cCHHHHHHHHhhcCCCCEEe
Confidence 3 49999999642 2111111 12244677889999999975
No 195
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.12 E-value=8e-06 Score=67.35 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhcCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDG 117 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~~~ 117 (192)
..++||||+|-|+.+..++... .+|++.|+|+... -.|.+.+. +.+.. . .+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---------------~~v~aTE~S~~Mr~rL~~kg~~vl~--~~~w~-------~-~~ 149 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---------------KEVYATEASPPMRWRLSKKGFTVLD--IDDWQ-------Q-TD 149 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---------------ceEEeecCCHHHHHHHHhCCCeEEe--hhhhh-------c-cC
Confidence 4689999999999999999887 4799999998421 13444332 22221 1 23
Q ss_pred CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+||+|.|---.+ . .....++|+.+++.|+|+|.+++-+
T Consensus 150 ~~fDvIscLNvLD--------R---c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 150 FKFDVISCLNVLD--------R---CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CceEEEeehhhhh--------c---cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999843211 0 1112467899999999999998754
No 196
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.12 E-value=2.1e-06 Score=69.62 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=63.1
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCceEEecccCCchhHHHHH---hhcCCC
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVI---RHFDGC 118 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-~~~~v~~~~~Di~~~~~~~~~~---~~~~~~ 118 (192)
.++||||||||-....+..+. .+++|||+|... ... ...++.+.-...+.. +...++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a---------------~~ltGvDiS~nMl~kA----~eKg~YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMA---------------DRLTGVDISENMLAKA----HEKGLYDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred ceeeecccCcCcccHhHHHHH---------------hhccCCchhHHHHHHH----HhccchHHHHHHHHHHHhhhccCC
Confidence 699999999999999999886 589999999721 100 001122222222222 223467
Q ss_pred cccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 119 ~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
.||+|++--...+.| -...++..+...|+|||.|.+++-.
T Consensus 188 r~DLi~AaDVl~YlG-----------~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 188 RFDLIVAADVLPYLG-----------ALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred cccchhhhhHHHhhc-----------chhhHHHHHHHhcCCCceEEEEecc
Confidence 999998742222222 1245678889999999999987744
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.10 E-value=2.5e-05 Score=61.57 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~ 108 (192)
.|.+||||.+|+|+.+..++-|. ...++.||.+... . ..++..+..|...
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG--------------A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~---- 104 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG--------------AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR---- 104 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC--------------CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH----
Confidence 48999999999999999999884 5899999999732 1 1356666777762
Q ss_pred HHHHhhcCC-CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 109 EVVIRHFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 109 ~~~~~~~~~-~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
....... ..||+|..|+++. .+.. ...+.. .+..-..+|+|+|.+++..-.
T Consensus 105 --~L~~~~~~~~FDlVflDPPy~-~~l~------~~~~~~-~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 105 --ALKQLGTREPFDLVFLDPPYA-KGLL------DKELAL-LLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred --HHHhcCCCCcccEEEeCCCCc-cchh------hHHHHH-HHHHhcCCcCCCcEEEEEeCC
Confidence 1122222 2599999999865 2211 111111 111235789999999995543
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.07 E-value=0.00012 Score=56.96 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=63.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCceEEecccCCc
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNA 105 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------------~~~~v~~~~~Di~~~ 105 (192)
..++.+||+||||+|--+..++... ...+|+..|.++.. ...++.+...|..+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-------------~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~ 109 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-------------GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDE 109 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--------------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-
T ss_pred hcCCceEEEECCccchhHHHHHhcc-------------CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCc
Confidence 3568999999999999999988884 26899999998731 113455556666553
Q ss_pred hhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe-cCCCChHHHHHHHHc
Q 029488 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI-FRGKDTSLLYCQVNK 182 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~-~~~~~~~~l~~~l~~ 182 (192)
.. ...+...+||+|++.-. .++.. ....++..+.++|+|+|.+++.. .+.......+..+++
T Consensus 110 ~~----~~~~~~~~~D~IlasDv-----~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 110 LD----SDLLEPHSFDVILASDV-----LYDEE------LFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp HH----HHHHS-SSBSEEEEES-------S-GG------GHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred cc----ccccccccCCEEEEecc-----cchHH------HHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 21 12334568999986422 12222 22456778889999999966533 233334555555544
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.07 E-value=2.9e-05 Score=67.18 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+.+|||+|||+|.++..+++.. .+|+|+|+++.. .+.+++++.+|+.+... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~--~ 260 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---------------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ--A 260 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH--H
Confidence 3579999999999999888774 489999999731 34578899999866321 1
Q ss_pred HHh--hc---C-----CCcccEEEeCCC
Q 029488 111 VIR--HF---D-----GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~--~~---~-----~~~~DlV~~d~~ 128 (192)
... .+ . ...+|+|+.|++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC
Confidence 000 01 1 124899999986
No 200
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.6e-05 Score=64.66 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=80.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~ 107 (192)
+||.+||+-|+|+|++|.++++.++ |.++++..|..... .+ .++++..-|+...-.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~------------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA------------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC------------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 7999999999999999999999997 89999999997632 12 478888889987643
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCC-EEEEEecCCCChHHHHHHHHcc-CC
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIAKIFRGKDTSLLYCQVNKM-LV 185 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG-~~v~k~~~~~~~~~l~~~l~~~-f~ 185 (192)
. ..+..+|.|..|.+-. + .++-.+.++||.+| +|++..-.-+..+.....++.+ |-
T Consensus 172 ~------~ks~~aDaVFLDlPaP---------w-------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~ 229 (314)
T KOG2915|consen 172 L------IKSLKADAVFLDLPAP---------W-------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFI 229 (314)
T ss_pred c------ccccccceEEEcCCCh---------h-------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCc
Confidence 2 2256899999997421 1 23445667899877 5554222223344444455554 55
Q ss_pred eeeE
Q 029488 186 KTPV 189 (192)
Q Consensus 186 ~v~~ 189 (192)
++..
T Consensus 230 ~i~~ 233 (314)
T KOG2915|consen 230 EIET 233 (314)
T ss_pred eEEE
Confidence 4443
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=68.27 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=53.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCch
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~ 106 (192)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++.. . .++++++.+|+.+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~---------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA---------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3678999999999999999999874 589999999731 1 357889999997632
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCC
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~ 130 (192)
...+|.|++|.+.+
T Consensus 99 ----------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 ----------FPYFDVCVANVPYQ 112 (294)
T ss_pred ----------ccccCEEEecCCcc
Confidence 13689999998754
No 202
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.06 E-value=1.3e-05 Score=64.13 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=67.0
Q ss_pred cCCC-eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCc-eEEecccCCch
Q 029488 40 EGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV-IQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~-~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v-~~~~~Di~~~~ 106 (192)
.+.. +||+||||+|-.+.++++.++ .....--|..+.. ..+|+ ..+.-|+++..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP-------------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALP-------------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCC-------------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 4444 599999999999999999984 5666666666531 12333 12445666542
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
-.-.........+||.|+|--. -|..+-.....++..+.+.|++||.|++.
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~---------lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINM---------LHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CccccccccCCCCcceeeehhH---------HHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 1100000113468999998533 23333444567899999999999999875
No 203
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=3.8e-05 Score=62.18 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=74.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------------CCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------------~~~v~~~~~Di~~~~~~ 108 (192)
..+++||||.=+|.-+...|..++ +.++|+++|+++... ...+++++++..+. .
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp------------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es--L 138 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP------------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES--L 138 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC------------CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh--H
Confidence 468999999999999999999987 789999999998421 23577788877552 4
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.++......+.||+++.|.-. +.+ ..-...++++||+||.+++-
T Consensus 139 d~l~~~~~~~tfDfaFvDadK--------~nY------~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDADK--------DNY------SNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHhcCCCCceeEEEEccch--------HHH------HHHHHHHHhhcccccEEEEe
Confidence 445555567899999998631 122 13456788999999999874
No 204
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.04 E-value=2.6e-05 Score=62.42 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C---C-CCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A---P-IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~------~---~-~~~v~~~~~Di~~~~~~~~ 110 (192)
+.+.|+++|...||-+.+.|..+. -.++.++|+|+|+..- . + .+++++++||..+.+....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~---------~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLE---------LLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHH---------HTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHH---------HhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHH
Confidence 466999999999999988876542 1125789999999531 1 1 2689999999999987766
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+..........+|+-|.. +..+|. ...|+.-..++++|+++|+
T Consensus 103 v~~~~~~~~~vlVilDs~------H~~~hv------l~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSS------HTHEHV------LAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SGSS----SSEEEEESS----------SSH------HHHHHHHHHT--TT-EEEE
T ss_pred HHHhhccCCceEEEECCC------ccHHHH------HHHHHHhCccCCCCCEEEE
Confidence 554444456678998864 222222 3456667789999999988
No 205
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.00 E-value=5e-05 Score=62.66 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcc
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~ 120 (192)
....|-|+|||-+-+++ . ....|+..|+.+. |-.++..|+++.. ++++++
T Consensus 180 ~~~vIaD~GCGEakiA~----~--------------~~~kV~SfDL~a~----~~~V~~cDm~~vP--------l~d~sv 229 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----S--------------ERHKVHSFDLVAV----NERVIACDMRNVP--------LEDESV 229 (325)
T ss_pred CceEEEecccchhhhhh----c--------------cccceeeeeeecC----CCceeeccccCCc--------CccCcc
Confidence 45689999999988776 2 2468999998863 4446788998843 467899
Q ss_pred cEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC--CChHHHHHHHHcc-CC
Q 029488 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQVNKM-LV 185 (192)
Q Consensus 121 DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~--~~~~~l~~~l~~~-f~ 185 (192)
|+++.-.+..+. | ....+.+|.|+||+||.+.+-.-.. .+...+...+..+ |.
T Consensus 230 DvaV~CLSLMgt---n---------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 230 DVAVFCLSLMGT---N---------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFD 285 (325)
T ss_pred cEEEeeHhhhcc---c---------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCe
Confidence 999875443221 1 1356889999999999998854322 2344455555554 44
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=98.00 E-value=7.6e-05 Score=62.03 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=77.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~ 104 (192)
...++||=+|.|-|+-++.+++. + .+|+-||+++.. ..|+++.+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--------------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~---- 131 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--------------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---- 131 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--------------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----
Confidence 45689999999999999999877 2 399999999731 1356655431
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC----CCChHHHHHHH
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLLYCQV 180 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~----~~~~~~l~~~l 180 (192)
+.+ ...++||+|++|..++ ....+.+.+.|+|||.+++..-. ......+...+
T Consensus 132 ------~~~-~~~~~fDVIIvDs~~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l 188 (262)
T PRK00536 132 ------LLD-LDIKKYDLIICLQEPD----------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM 188 (262)
T ss_pred ------hhh-ccCCcCCEEEEcCCCC----------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHH
Confidence 111 1235899999996532 12346688999999999986432 22345677788
Q ss_pred HccCCeeeEE
Q 029488 181 NKMLVKTPVY 190 (192)
Q Consensus 181 ~~~f~~v~~~ 190 (192)
+..|..|..|
T Consensus 189 ~~~F~~v~~y 198 (262)
T PRK00536 189 GDFFSIAMPF 198 (262)
T ss_pred HhhCCceEEE
Confidence 8889877665
No 207
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=3e-05 Score=63.36 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
+..+||+||-.|..|..++...+ .-.|+|+||++
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~-------------~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG-------------PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc-------------cceeeEeeccH
Confidence 67899999999999999999985 56799999997
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.98 E-value=4.3e-06 Score=70.63 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=63.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCceEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~--~~v~~~~~Di~~~~ 106 (192)
+++.+|+|-|||+|+|...+.+..... ....+...++|+|+++.. .. ....+..+|.....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~------~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK------RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC------HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhccc------ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 567899999999999998887753100 000036899999999742 11 12235667765432
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCC--cccc-H--HH-----HHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGL--HDMD-E--FV-----QSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~--~~~~-~--~~-----~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
. ......||+|++++++..... .... . +. ........+..+.+.||+||.+.+.+
T Consensus 119 ~------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 119 K------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp S------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c------cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1 112468999999998654311 0100 0 00 00111246778899999999987654
No 209
>PRK04148 hypothetical protein; Provisional
Probab=97.97 E-value=7.1e-05 Score=56.08 Aligned_cols=94 Identities=20% Similarity=0.144 Sum_probs=65.3
Q ss_pred CCCeEEeEcCCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhc
Q 029488 41 GVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 41 ~g~~vLDlG~GpG~-~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
+++++||+|||+|. .+..|++. +.+|+|+|+++... ..++.++.+|++++... +
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---------------G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~------~ 74 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---------------GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE------I 74 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH------H
Confidence 46899999999996 88888855 37999999998531 23577899999987531 1
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
-..+|+|.+--+|. .++..+++.|. |-|.-++++.+.++.
T Consensus 75 -y~~a~liysirpp~-------------el~~~~~~la~---~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 75 -YKNAKLIYSIRPPR-------------DLQPFILELAK---KINVPLIIKPLSGEE 114 (134)
T ss_pred -HhcCCEEEEeCCCH-------------HHHHHHHHHHH---HcCCCEEEEcCCCCC
Confidence 24899999864331 12233444444 347778887776665
No 210
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.95 E-value=5.3e-06 Score=73.82 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=56.1
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC-CCceEE--ecccCCch-hHHHHHhhcCCC
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQV--QGDITNAR-TAEVVIRHFDGC 118 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~-~~v~~~--~~Di~~~~-~~~~~~~~~~~~ 118 (192)
..+||+|||.|+|+.+|+.+ .|+.+-+.+.... .+++|. .| +...- ....-+-.++++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----------------~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~ 180 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----------------NVTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSN 180 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----------------CceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCcc
Confidence 47999999999999999987 3444444442211 122221 11 10000 000001236788
Q ss_pred cccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 119 ~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.||+|.|.-... .+.... ...|-++-|+|||||+|+..--
T Consensus 181 ~fDmvHcsrc~i---~W~~~~-------g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 181 AFDMVHCSRCLI---PWHPND-------GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred chhhhhcccccc---cchhcc-------cceeehhhhhhccCceEEecCC
Confidence 999999975421 111111 1246678899999999998643
No 211
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.1e-05 Score=62.89 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=67.0
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------------CCCCce
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGVI 96 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------------~~~~v~ 96 (192)
.++||.++||+|+|+|-.+..++..++- +...++|||..+.. .-.++.
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~-----------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGA-----------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcC-----------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3689999999999999999999988861 23334999987631 012567
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
++.||.+.-.. +..+||.|.+-++-. ...+.....|++||.+++-.-
T Consensus 148 ivvGDgr~g~~--------e~a~YDaIhvGAaa~-----------------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDGRKGYA--------EQAPYDAIHVGAAAS-----------------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCccccCC--------ccCCcceEEEccCcc-----------------ccHHHHHHhhccCCeEEEeec
Confidence 78888876432 346899998864311 122345689999999988654
No 212
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.91 E-value=9.8e-05 Score=61.89 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=74.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCc-eEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGV-IQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v-~~~~~Di~~~~~~ 108 (192)
..-+|||++||+|.....+....+. ...+|.-.|.++.. .+.++ +|.++|+.+.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~-----------~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPE-----------RPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCC-----------CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 3469999999999999888888651 14689999999852 35565 8999999997654
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.. + ....++++..|-+.. +....+....+.-....+.|||+++..
T Consensus 204 ~~----l-~p~P~l~iVsGL~El--------F~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 204 AA----L-DPAPTLAIVSGLYEL--------FPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred hc----c-CCCCCEEEEecchhh--------CCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 32 1 236799998764322 122344456788888999999999874
No 213
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.90 E-value=1.1e-05 Score=57.31 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=40.3
Q ss_pred EeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---C-------C-CCCceEEecccCCchhHHHHHhh
Q 029488 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-------P-IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 46 LDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---~-------~-~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
|++|+..|..+.++++..+.. ..++++++|..+. . . ..++.++.+|..+. .. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~----------~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--l~----~ 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN----------GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF--LP----S 64 (106)
T ss_dssp ------------------------------------EEEESS------------GGG-BTEEEEES-THHH--HH----H
T ss_pred Ccccccccccccccccccccc----------ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH--HH----H
Confidence 689999999999999876511 1248999999982 1 1 23688888888542 22 2
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
++..++|+|..|+... .......+..+...|+|||.+++
T Consensus 65 ~~~~~~dli~iDg~H~------------~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 65 LPDGPIDLIFIDGDHS------------YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHH--EEEEEEES---------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCCCEEEEEECCCCC------------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 2246999999998421 11224567888999999998876
No 214
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=3.9e-05 Score=58.20 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=56.9
Q ss_pred HHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC----CCceEE
Q 029488 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQV 98 (192)
Q Consensus 29 l~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~----~~v~~~ 98 (192)
+..|++.++= =.|++++|||||.|-.+. +..++ ....|+|+|+.|.+ .. -++.++
T Consensus 37 ~~~Ih~Tygd-iEgkkl~DLgcgcGmLs~--a~sm~------------~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 37 LYTIHNTYGD-IEGKKLKDLGCGCGMLSI--AFSMP------------KNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred HHHHHhhhcc-ccCcchhhhcCchhhhHH--HhhcC------------CCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 3445555541 158999999999999993 33333 46899999999853 11 145678
Q ss_pred ecccCCchhHHHHHhhcCCCcccEEEeCCCCCCC
Q 029488 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (192)
Q Consensus 99 ~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~ 132 (192)
+.|+.++.. .+..||.++.|+++...
T Consensus 102 qcdildle~--------~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 102 QCDILDLEL--------KGGIFDTAVINPPFGTK 127 (185)
T ss_pred eeeccchhc--------cCCeEeeEEecCCCCcc
Confidence 899988653 35799999999987543
No 215
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.87 E-value=2.8e-05 Score=64.32 Aligned_cols=82 Identities=30% Similarity=0.404 Sum_probs=63.3
Q ss_pred hhhHHhhHHHHHhHc-------CcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---
Q 029488 22 RARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--- 91 (192)
Q Consensus 22 ~~r~~~kl~~i~~~~-------~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--- 91 (192)
.+|+..||-|....| .-+.+|+..+|||+.||||+..|-++. -.|++||--+|+.
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~---------------m~V~aVDng~ma~sL~ 249 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRN---------------MRVYAVDNGPMAQSLM 249 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcc---------------eEEEEeccchhhhhhh
Confidence 678999998864433 346899999999999999999988773 6999999999863
Q ss_pred -CCCceEEecccCCchhHHHHHhhcC-CCcccEEEeCC
Q 029488 92 -IEGVIQVQGDITNARTAEVVIRHFD-GCKADLVVCDG 127 (192)
Q Consensus 92 -~~~v~~~~~Di~~~~~~~~~~~~~~-~~~~DlV~~d~ 127 (192)
...|+-...|=.+.. | ....|..+||+
T Consensus 250 dtg~v~h~r~DGfk~~---------P~r~~idWmVCDm 278 (358)
T COG2933 250 DTGQVTHLREDGFKFR---------PTRSNIDWMVCDM 278 (358)
T ss_pred cccceeeeeccCcccc---------cCCCCCceEEeeh
Confidence 235666666666532 2 46899999997
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0002 Score=63.61 Aligned_cols=70 Identities=26% Similarity=0.484 Sum_probs=54.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~ 108 (192)
.+++++||+=||.|+|+..+|++. .+|+|+|+++. ..+.|++|..+|..+...
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~---------------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~- 355 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV---------------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP- 355 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC---------------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh-
Confidence 467899999999999999999764 69999999984 235678888888876321
Q ss_pred HHHHhhcCCCcccEEEeCCCC
Q 029488 109 EVVIRHFDGCKADLVVCDGAP 129 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~ 129 (192)
....+..+|.|+.|++-
T Consensus 356 ----~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 356 ----AWWEGYKPDVVVVDPPR 372 (432)
T ss_pred ----hccccCCCCEEEECCCC
Confidence 11134589999999863
No 217
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.82 E-value=1.8e-05 Score=61.27 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=60.6
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~~~ 110 (192)
..|+|++||-||-+..+|+.. ..|+|+|++|.. . .+++.++.+|..+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---------------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---- 61 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---------------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---- 61 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG----
T ss_pred CEEEEeccCcCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH----
Confidence 369999999999999999885 589999999842 1 247899999998732
Q ss_pred HHhhcCCCc-ccEEEeCCC---CCCCCCccccH-HHHHHH-HHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc
Q 029488 111 VIRHFDGCK-ADLVVCDGA---PDVTGLHDMDE-FVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM 183 (192)
Q Consensus 111 ~~~~~~~~~-~DlV~~d~~---~~~~g~~~~~~-~~~~~l-~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~ 183 (192)
..+.... +|.|+++++ |++......+- ...... ...+++.+.++ --.+++.+-+..+..++..+..+.
T Consensus 62 --~~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~~~l 135 (163)
T PF09445_consen 62 --KRLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLTREL 135 (163)
T ss_dssp --GGB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT----
T ss_pred --hhccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHhccc
Confidence 2222222 899999874 22222111110 000000 12233333322 344677777778888877665443
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00014 Score=60.21 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=58.2
Q ss_pred HHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecc
Q 029488 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGD 101 (192)
Q Consensus 31 ~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~D 101 (192)
.|-+.... ++++.||++|+|.|++|..|+++. ..|+|+++++. ...++++.+++|
T Consensus 21 kIv~~a~~-~~~d~VlEIGpG~GaLT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D 84 (259)
T COG0030 21 KIVEAANI-SPGDNVLEIGPGLGALTEPLLERA---------------ARVTAIEIDRRLAEVLKERFAPYDNLTVINGD 84 (259)
T ss_pred HHHHhcCC-CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence 34333333 458999999999999999999995 58999999973 124689999999
Q ss_pred cCCchhHHHHHhhcCCCcccEEEeCCCCC
Q 029488 102 ITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~DlV~~d~~~~ 130 (192)
+...+.... . .++.|++|.+.+
T Consensus 85 aLk~d~~~l----~---~~~~vVaNlPY~ 106 (259)
T COG0030 85 ALKFDFPSL----A---QPYKVVANLPYN 106 (259)
T ss_pred hhcCcchhh----c---CCCEEEEcCCCc
Confidence 988653211 1 689999998644
No 219
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.74 E-value=0.0004 Score=63.01 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=47.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------CC--CceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IE--GVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---------~~--~v~~~~~Di~~~~~~~ 109 (192)
.+.+|||.|||+|+|...++.+........ .-...++|+|+++... .. +.....+|.......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~-----~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~- 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFK-----EVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL- 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcc-----cceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-
Confidence 456999999999999999988764110000 0136799999997421 11 222333332221100
Q ss_pred HHHhhcCCCcccEEEeCCCCC
Q 029488 110 VVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~ 130 (192)
.... ..+.||+|++|++..
T Consensus 105 -~~~~-~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 -NIES-YLDLFDIVITNPPYG 123 (524)
T ss_pred -cccc-ccCcccEEEeCCCcc
Confidence 0000 124899999998754
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.74 E-value=0.00014 Score=63.39 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+-+|||+.||+|..+..++.+.+ ....|+++|++|.+ ...++.++++|.....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~------------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---- 108 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE------------GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---- 108 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH----
Confidence 35899999999999999988752 24789999999842 1235666777765531
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
... ...||+|..|+ +. . . ...+..+.+.+++||.+++..
T Consensus 109 --~~~-~~~fDvIdlDP-fG---s--~---------~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 109 --RYR-NRKFHVIDIDP-FG---T--P---------APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --HHh-CCCCCEEEeCC-CC---C--c---------HHHHHHHHHhcccCCEEEEEe
Confidence 111 35799999997 32 1 1 135677889999999998863
No 221
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=0.00035 Score=60.10 Aligned_cols=96 Identities=27% Similarity=0.363 Sum_probs=71.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-ceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~-v~~~~~Di~~~~~ 107 (192)
.+|.+|+|+-||-|.||..+|.... .+|+|+|++|.+ ...+ +..++||.....
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~--------------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~- 251 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR--------------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA- 251 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC--------------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-
Confidence 5699999999999999999998853 449999999952 2334 778899998732
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
..+ ..+|-|+++.+... ...+..|+..+|+||.+-...+..++
T Consensus 252 -----~~~--~~aDrIim~~p~~a---------------~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 252 -----PEL--GVADRIIMGLPKSA---------------HEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred -----hcc--ccCCEEEeCCCCcc---------------hhhHHHHHHHhhcCcEEEEEeccchh
Confidence 111 58999998764321 13566788999999999887765543
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.71 E-value=7.5e-05 Score=59.01 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=65.4
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.+.+-|||+|+|..+..+++.. .+|+|++.+|.. ...|++.+.+|..+.++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---------------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--- 94 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---------------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--- 94 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---------------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc---
Confidence 4789999999999999999874 699999999942 23478889999988642
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
...|.|+|-+- |...-..-+-.++..++..||.+++++=
T Consensus 95 -------e~ADvvicEml---------DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 95 -------ENADVVICEML---------DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -------cccceeHHHHh---------hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 47899998642 2111111122456667789999999763
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.68 E-value=0.00038 Score=55.87 Aligned_cols=104 Identities=20% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------------
Q 029488 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------------- 90 (192)
Q Consensus 31 ~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------------------- 90 (192)
.+.++.. +++++.++|||||.|.....++-..+ ..+.+||++.+..
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-------------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-------------CKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH---------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-------------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444 57899999999999999988877663 4569999999731
Q ss_pred CCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 91 PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 91 ~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
....+.+.++|..+.+....+ + ...|+|+++... .++... ..+......||+|-.+|.
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~---~--s~AdvVf~Nn~~-------F~~~l~-----~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDI---W--SDADVVFVNNTC-------FDPDLN-----LALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHH---G--HC-SEEEE--TT-------T-HHHH-----HHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhh---h--cCCCEEEEeccc-------cCHHHH-----HHHHHHHhcCCCCCEEEE
Confidence 123467779999886543322 2 267999998531 122211 234555678899988775
No 224
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.58 E-value=0.00029 Score=55.62 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=64.1
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~~~ 111 (192)
.+++|+|+|.|==+..++=.. |..+|+-+|...- ..++|++++.+.+.+.
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~-------------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~------ 110 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIAR-------------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP------ 110 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH--------------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT------
T ss_pred ceEEecCCCCCChhHHHHHhC-------------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc------
Confidence 389999999999999998887 5889999998862 2467898888887661
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.....||+|+|-+--. . ...+..+...|++||.+++
T Consensus 111 ---~~~~~fd~v~aRAv~~------l---------~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 111 ---EYRESFDVVTARAVAP------L---------DKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ---TTTT-EEEEEEESSSS------H---------HHHHHHHGGGEEEEEEEEE
T ss_pred ---ccCCCccEEEeehhcC------H---------HHHHHHHHHhcCCCCEEEE
Confidence 1246999999976311 1 2467788999999999876
No 225
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=97.56 E-value=0.0014 Score=54.21 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=70.6
Q ss_pred cCCCeEEeEcCCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhc
Q 029488 40 EGVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
...++|+.+|+|+-- =+..|.+..| ..+-++-.|+.+.....+. .+.+|+... .
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP------------~~ailvDnDi~d~vSDa~~-~~~~Dc~t~---------~ 117 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLP------------EDAILVDNDIRDYVSDADQ-SIVGDCRTY---------M 117 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-------------TT-EEEEEESS--B-SSSE-EEES-GGGE---------E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCC------------CCcEEEecchhhhccccCC-ceecccccc---------C
Confidence 458999999987532 3577788876 6788999999876554443 467888774 3
Q ss_pred CCCcccEEEeCCC----CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCCeeeEEe
Q 029488 116 DGCKADLVVCDGA----PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLVKTPVYF 191 (192)
Q Consensus 116 ~~~~~DlV~~d~~----~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~~v~~~~ 191 (192)
++.++|+|+||+= ..+.+..+.. .....-++..+.+-|+-||.+.+|+-...-..+ ++.+-.+|+..++|-
T Consensus 118 ~~~k~DlIiSDmYd~~~k~~~~~n~~~----~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~-Lyel~~~F~~wt~Fc 192 (299)
T PF06460_consen 118 PPDKFDLIISDMYDGRTKNCDGENNSK----EGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQ-LYELMGYFSWWTCFC 192 (299)
T ss_dssp ESS-EEEEEE----TTS-SS-S----------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HH-HHHHHTTEEEEEEEE
T ss_pred CCCcccEEEEecccccccccccccCCc----cccHHHHHHHHHhhhhcCceEEEEeecccccHH-HHHHHhhcccEEEEe
Confidence 4679999999972 1111111111 111234566778999999999999866555444 556666698888773
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.56 E-value=0.00015 Score=57.81 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=57.3
Q ss_pred CCCeEEeEcCCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------C----------
Q 029488 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P---------- 91 (192)
Q Consensus 41 ~g~~vLDlG~GpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~---------- 91 (192)
+.-+|+..||++|- .+..+.+..+.. .+-..+|+|.|+++.. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~--------~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGA--------LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S---------TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhccc--------CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 34699999999994 445555533210 0124799999999720 0
Q ss_pred --------------CCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhc
Q 029488 92 --------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (192)
Q Consensus 92 --------------~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (192)
..+|+|.+.|+.+.. .+...||+|+|.-..- +-.......++....+.|
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~NL~~~~--------~~~~~fD~I~CRNVlI---------YF~~~~~~~vl~~l~~~L 165 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRHNLLDPD--------PPFGRFDLIFCRNVLI---------YFDPETQQRVLRRLHRSL 165 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE--TT-S--------------EEEEEE-SSGG---------GS-HHHHHHHHHHHGGGE
T ss_pred cccCCCceeEChHHcCceEEEecccCCCC--------cccCCccEEEecCEEE---------EeCHHHHHHHHHHHHHHc
Confidence 135788888887721 1246999999964321 112233457788899999
Q ss_pred ccCCEEEE
Q 029488 158 KEGGKFIA 165 (192)
Q Consensus 158 kpgG~~v~ 165 (192)
+|||+|++
T Consensus 166 ~pgG~L~l 173 (196)
T PF01739_consen 166 KPGGYLFL 173 (196)
T ss_dssp EEEEEEEE
T ss_pred CCCCEEEE
Confidence 99999988
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.54 E-value=0.0032 Score=53.86 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=75.8
Q ss_pred chhhHHhhHHHH--HhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------
Q 029488 21 WRARSAFKLLQI--DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------- 89 (192)
Q Consensus 21 ~~~r~~~kl~~i--~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~--------- 89 (192)
|..|....+.+- .+-...+.++..++|+|||.|..+..|++.+.. .......+++|+|..
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~---------~~~~~~Y~plDIS~~~L~~a~~~L 124 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALER---------QKKSVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHh---------cCCCceEEEEECCHHHHHHHHHhh
Confidence 455555444432 122233467889999999999999988887630 113578999999962
Q ss_pred --CCCCCceE--EecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHH-hcccCCEEE
Q 029488 90 --APIEGVIQ--VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH-VLKEGGKFI 164 (192)
Q Consensus 90 --~~~~~v~~--~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~-~LkpgG~~v 164 (192)
...|.+.+ +.+|.++... .+++........+++.=|+ ..|....++. ...|+.+.+ .|+|||.|+
T Consensus 125 ~~~~~p~l~v~~l~gdy~~~l~--~l~~~~~~~~~r~~~flGS--siGNf~~~ea------~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 125 PLGNFSHVRCAGLLGTYDDGLA--WLKRPENRSRPTTILWLGS--SIGNFSRPEA------AAFLAGFLATALSPSDSFL 194 (319)
T ss_pred hhccCCCeEEEEEEecHHHHHh--hcccccccCCccEEEEeCc--cccCCCHHHH------HHHHHHHHHhhCCCCCEEE
Confidence 12355544 6788876421 0111101124567776553 2233323221 356777778 999999998
Q ss_pred EE
Q 029488 165 AK 166 (192)
Q Consensus 165 ~k 166 (192)
+-
T Consensus 195 iG 196 (319)
T TIGR03439 195 IG 196 (319)
T ss_pred Ee
Confidence 83
No 228
>PRK11524 putative methyltransferase; Provisional
Probab=97.51 E-value=0.00086 Score=56.24 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=54.4
Q ss_pred CceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCC-----ccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 94 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-----HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 94 ~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~-----~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+..++++|+.+. ...++++++|+|++|++...... ...+...........+.++.++|||||.|++ ..
T Consensus 8 ~~~i~~gD~~~~------l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i-~~ 80 (284)
T PRK11524 8 AKTIIHGDALTE------LKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI-MN 80 (284)
T ss_pred CCEEEeccHHHH------HHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE-Ec
Confidence 345678888763 23466789999999987642110 0111112223456788999999999999998 34
Q ss_pred CCCChHHHHHHHHccCCeeeEE
Q 029488 169 RGKDTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 169 ~~~~~~~l~~~l~~~f~~v~~~ 190 (192)
.......+...++.-|.-...+
T Consensus 81 ~~~~~~~~~~~~~~~f~~~~~i 102 (284)
T PRK11524 81 STENMPFIDLYCRKLFTIKSRI 102 (284)
T ss_pred CchhhhHHHHHHhcCcceEEEE
Confidence 4433344444555555544433
No 229
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.49 E-value=0.00042 Score=59.97 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=43.2
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchh-HHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART-AEV 110 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~-~~~ 110 (192)
.++|||.||.|.|+..+|... .+|+|||+++. ..+.|++++.++..+... ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---------------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---------------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK 262 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---------------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred CcEEEEeecCCHHHHHHHhhC---------------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence 389999999999999999885 59999999974 246788998776533210 000
Q ss_pred HHh-------hcCCCcccEEEeCCCCC
Q 029488 111 VIR-------HFDGCKADLVVCDGAPD 130 (192)
Q Consensus 111 ~~~-------~~~~~~~DlV~~d~~~~ 130 (192)
..+ .+....+|.|+.|++-.
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDPPR~ 289 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDPPRA 289 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---TT
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcCCCC
Confidence 000 02234789999998643
No 230
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00021 Score=63.84 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=49.5
Q ss_pred hhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------
Q 029488 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------- 90 (192)
Q Consensus 22 ~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------- 90 (192)
++.++-+|..+-....-+..++.++|+|||+|.++..++++. .+|+||+++|.+
T Consensus 364 Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---------------~~ViGvEi~~~aV~dA~~nA~~N 428 (534)
T KOG2187|consen 364 NTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---------------KRVIGVEISPDAVEDAEKNAQIN 428 (534)
T ss_pred CcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---------------cceeeeecChhhcchhhhcchhc
Confidence 344555666554444456778999999999999999999886 699999999852
Q ss_pred CCCCceEEec
Q 029488 91 PIEGVIQVQG 100 (192)
Q Consensus 91 ~~~~v~~~~~ 100 (192)
.+.|++|+.|
T Consensus 429 gisNa~Fi~g 438 (534)
T KOG2187|consen 429 GISNATFIVG 438 (534)
T ss_pred Cccceeeeec
Confidence 2467888888
No 231
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=97.49 E-value=0.0046 Score=57.46 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=101.7
Q ss_pred CChHHHHHHHhCchhhHHhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 9 ~~~~~~~~~~~~~~~r~~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
.||-..=.|-..+.+=|-+|+..|...+++ ++ .-+|=.|=|+||.+.++++.++ .++++-.-+-.
T Consensus 292 qnPlISGLR~~Q~ATGAHYKlRsIL~~~~i-~~-~d~l~~GDGSGGita~lLR~~p-------------~sr~iFNSLL~ 356 (675)
T PF14314_consen 292 QNPLISGLRLFQLATGAHYKLRSILKNLNI-KY-RDALCGGDGSGGITACLLRMNP-------------TSRGIFNSLLE 356 (675)
T ss_pred cCcchhhhhhhcccccchhhHHHHHHhcCC-Cc-ceeEEEecCchHHHHHHHHhCc-------------ccceeeecccc
Confidence 444443334444455566888888777764 22 4678899999999999999984 55655544332
Q ss_pred CC--------C--------C----CCce------EEecccCCchhHHHHHhhc--CCCcccEEEeCCCCCCCCCccccHH
Q 029488 89 MA--------P--------I----EGVI------QVQGDITNARTAEVVIRHF--DGCKADLVVCDGAPDVTGLHDMDEF 140 (192)
Q Consensus 89 ~~--------~--------~----~~v~------~~~~Di~~~~~~~~~~~~~--~~~~~DlV~~d~~~~~~g~~~~~~~ 140 (192)
+. | + .+.. -..-|++++++..-+.... -+-.+|+|++|+.. .|..
T Consensus 357 ~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV-------~d~~ 429 (675)
T PF14314_consen 357 LDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEV-------RDDS 429 (675)
T ss_pred ccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEecee-------cChH
Confidence 11 1 0 0110 1234888876655444331 24589999999852 2333
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEecCCC---ChHHHHHHHHccCCeeeEE
Q 029488 141 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGK---DTSLLYCQVNKMLVKTPVY 190 (192)
Q Consensus 141 ~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~---~~~~l~~~l~~~f~~v~~~ 190 (192)
...+....+-..+..+|.++|++++|+|-.. ....++..+-.+|.+|+++
T Consensus 430 ~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~ 482 (675)
T PF14314_consen 430 IIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELV 482 (675)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEE
Confidence 3333334455667788999999999998542 2336788888899999886
No 232
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.45 E-value=0.00075 Score=56.17 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=58.2
Q ss_pred HHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCC---Cce
Q 029488 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIE---GVI 96 (192)
Q Consensus 29 l~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~---~v~ 96 (192)
+.+|.++.+ +++++.||++|.|||+.|..|++.. .+|+|++++|- +..| ..+
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~---------------kkVvA~E~Dprmvael~krv~gtp~~~kLq 110 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG---------------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQ 110 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc---------------CeEEEEecCcHHHHHHHHHhcCCCccceee
Confidence 344444444 5899999999999999999999984 69999999982 1222 467
Q ss_pred EEecccCCchhHHHHHhhcCCCcccEEEeCCCCC
Q 029488 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 97 ~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~ 130 (192)
.+.||....+ ...||.+++|.++.
T Consensus 111 V~~gD~lK~d----------~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 111 VLHGDFLKTD----------LPRFDGCVSNLPYQ 134 (315)
T ss_pred EEecccccCC----------CcccceeeccCCcc
Confidence 8899998854 24899999987643
No 233
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00021 Score=58.20 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=73.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------CCCCCc--eEEecccCCchhHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------APIEGV--IQVQGDITNARTAEV 110 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-------~~~~~v--~~~~~Di~~~~~~~~ 110 (192)
+....++|+||+-|..+..+.... ..+++-+|.|.- ...|.+ ....+|-...+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--------------vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld---- 132 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--------------VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD---- 132 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--------------hhheeeeecchHHHHHhhccCCCceEEEEEecchhccc----
Confidence 446689999999999999998774 578999998852 122443 33455554432
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHH
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 178 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~ 178 (192)
+.++++|+|++..+.++.. +- ..-+..|...|||+|.|+-.++.+++.-+|-.
T Consensus 133 ----f~ens~DLiisSlslHW~N----dL-------Pg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 133 ----FKENSVDLIISSLSLHWTN----DL-------PGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred ----ccccchhhhhhhhhhhhhc----cC-------chHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 4568999999987654321 10 12345678899999999999998877555444
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.00048 Score=55.64 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=65.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
+++++|+|+|+|==+..++=.. |..+|+=+|...- ..++|++++.+.+.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-------------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~---- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-------------PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG---- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-------------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc----
Confidence 6899999999999999998554 5677999998863 24678988888777642
Q ss_pred HHhhcCCCc-ccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCK-ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~-~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.... ||.|+|.+--+ . ...+..+..++|+||.++...
T Consensus 131 -----~~~~~~D~vtsRAva~------L---------~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 131 -----QEKKQYDVVTSRAVAS------L---------NVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred -----cccccCcEEEeehccc------h---------HHHHHHHHHhcccCCcchhhh
Confidence 1123 99999975211 1 235677889999999986533
No 235
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.27 E-value=0.00088 Score=56.44 Aligned_cols=98 Identities=18% Similarity=0.084 Sum_probs=60.3
Q ss_pred CeEEeEcCCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CC-----------
Q 029488 43 KRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PI----------- 92 (192)
Q Consensus 43 ~~vLDlG~GpG~----~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~----------- 92 (192)
-+|+..||++|- .+..+.+..+.. ....+|+|+|+++.. .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~---------~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~ 187 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTA---------PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMR 187 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhccc---------CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHccc
Confidence 599999999995 445555543210 124789999999621 00
Q ss_pred ----------------CCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHh
Q 029488 93 ----------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHV 156 (192)
Q Consensus 93 ----------------~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~ 156 (192)
..|+|.+.|+.+... .+.+.||+|+|.....+ .+ ......++....+.
T Consensus 188 ~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~-------~~~~~fD~I~cRNvliy-----F~----~~~~~~vl~~l~~~ 251 (287)
T PRK10611 188 GTGPHEGLVRVRQELANYVDFQQLNLLAKQW-------AVPGPFDAIFCRNVMIY-----FD----KTTQERILRRFVPL 251 (287)
T ss_pred ccCCCCceEEEChHHHccCEEEcccCCCCCC-------ccCCCcceeeHhhHHhc-----CC----HHHHHHHHHHHHHH
Confidence 124555556654211 11358999999542211 11 12335678889999
Q ss_pred cccCCEEEE
Q 029488 157 LKEGGKFIA 165 (192)
Q Consensus 157 LkpgG~~v~ 165 (192)
|+|||.|++
T Consensus 252 L~pgG~L~l 260 (287)
T PRK10611 252 LKPDGLLFA 260 (287)
T ss_pred hCCCcEEEE
Confidence 999998876
No 236
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.23 E-value=0.00036 Score=62.36 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=63.0
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CC-----CCceEEecccCCchhHHHHHhh
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI-----EGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---~~-----~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
..|+|+.+|.|||+..|... + |.-+.+.|.. .+ .|..-+..|.... ...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--------------~---VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~------fsT 423 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--------------P---VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEA------FST 423 (506)
T ss_pred eeeeeecccccHHHHHhccC--------------C---ceEEEecccCCCCcchhhhhcccchhccchhhc------cCC
Confidence 47999999999999999754 2 4444444432 11 1332233444432 122
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHcc
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKM 183 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~ 183 (192)
+ .+.+|+|.+++-++... .......++.++-|+|||||.+++ .+...++..++.+
T Consensus 424 Y-PRTYDLlHA~~lfs~~~--------~rC~~~~illEmDRILRP~G~~ii-----RD~~~vl~~v~~i 478 (506)
T PF03141_consen 424 Y-PRTYDLLHADGLFSLYK--------DRCEMEDILLEMDRILRPGGWVII-----RDTVDVLEKVKKI 478 (506)
T ss_pred C-Ccchhheehhhhhhhhc--------ccccHHHHHHHhHhhcCCCceEEE-----eccHHHHHHHHHH
Confidence 3 47999999997654211 111224567789999999999998 4444544444443
No 237
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.0015 Score=51.95 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=33.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
+++|++|+|+=.|.|-|+..++.-.+ +.+.|+++--..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg------------p~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG------------PKGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC------------CceeEEEecchh
Confidence 58999999999999999999999987 788998875443
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.22 E-value=0.0049 Score=58.04 Aligned_cols=121 Identities=9% Similarity=-0.087 Sum_probs=70.5
Q ss_pred CcccCCCeEEeEcCCCChHHHHHHHHhCCC--CCCCCCCCC---------------------------CCCCeEEEEeCC
Q 029488 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLP--AKLSPDSRE---------------------------GDLPLIVAIDLQ 87 (192)
Q Consensus 37 ~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~--~~~~~~~~~---------------------------~~~~~V~gvD~~ 87 (192)
.+.+++..++|-+||+|.+...++....-. ...+.++.+ .....|+|+|++
T Consensus 186 ~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did 265 (702)
T PRK11783 186 GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDID 265 (702)
T ss_pred CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECC
Confidence 344578899999999999998877642100 001100100 123479999999
Q ss_pred CCC-----------CCC-CceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 029488 88 PMA-----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTH 155 (192)
Q Consensus 88 ~~~-----------~~~-~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~ 155 (192)
+.. .+. .+.+.++|+.+... ....+++|+|++|++... ...+......+. ..+...++
T Consensus 266 ~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~------~~~~~~~d~IvtNPPYg~---r~~~~~~l~~lY-~~lg~~lk 335 (702)
T PRK11783 266 PRVIQAARKNARRAGVAELITFEVKDVADLKN------PLPKGPTGLVISNPPYGE---RLGEEPALIALY-SQLGRRLK 335 (702)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeCChhhccc------ccccCCCCEEEECCCCcC---ccCchHHHHHHH-HHHHHHHH
Confidence 842 222 46788899887431 112347999999986531 111111122222 33455566
Q ss_pred hcccCCEEEEEe
Q 029488 156 VLKEGGKFIAKI 167 (192)
Q Consensus 156 ~LkpgG~~v~k~ 167 (192)
...+|+..++.+
T Consensus 336 ~~~~g~~~~llt 347 (702)
T PRK11783 336 QQFGGWNAALFS 347 (702)
T ss_pred HhCCCCeEEEEe
Confidence 666998887744
No 239
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.18 E-value=0.0011 Score=50.93 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 93 ~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
.+++++++|+.+.. +++++||+|++....+ +..+ ...+++++.++|||||.|++..+...
T Consensus 26 ~~i~~~~~d~~~lp--------~~~~~fD~v~~~~~l~-----~~~d------~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 26 KCIEWIEGDAIDLP--------FDDCEFDAVTMGYGLR-----NVVD------RLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred CceEEEEechhhCC--------CCCCCeeEEEecchhh-----cCCC------HHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 36889999998743 3567899999875432 2221 13678999999999999998777643
No 240
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.06 E-value=0.001 Score=55.14 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=53.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++..|||+|+|+|.+|..|++.. .+++++|+++. ...++++.+.+|+.+.+....
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---------------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---------------KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---------------SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred CCCCEEEEeCCCCccchhhHhccc---------------CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 378999999999999999999884 69999999973 124689999999998764211
Q ss_pred HHhhcCCCcccEEEeCCCC
Q 029488 111 VIRHFDGCKADLVVCDGAP 129 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~ 129 (192)
+ ......|+++.+.
T Consensus 94 ----~-~~~~~~vv~NlPy 107 (262)
T PF00398_consen 94 ----L-KNQPLLVVGNLPY 107 (262)
T ss_dssp ----C-SSSEEEEEEEETG
T ss_pred ----h-cCCceEEEEEecc
Confidence 1 2366788887653
No 241
>PRK13699 putative methylase; Provisional
Probab=96.87 E-value=0.0067 Score=49.36 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=50.1
Q ss_pred eEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCc-----cccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC
Q 029488 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH-----DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (192)
Q Consensus 96 ~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~-----~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~ 170 (192)
+++.+|+.+ +...++++++|+|+.|++... +.. ..............+.++.++|||||.+++. +..
T Consensus 3 ~l~~gD~le------~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~~ 74 (227)
T PRK13699 3 RFILGNCID------VMARFPDNAVDFILTDPPYLV-GFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-YGW 74 (227)
T ss_pred eEEechHHH------HHHhCCccccceEEeCCCccc-ccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-ecc
Confidence 456777765 334578899999999987542 111 0111112344567889999999999998762 222
Q ss_pred CChHHHHHHHHcc-CCeee
Q 029488 171 KDTSLLYCQVNKM-LVKTP 188 (192)
Q Consensus 171 ~~~~~l~~~l~~~-f~~v~ 188 (192)
.....+...++.. |.-..
T Consensus 75 ~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 75 NRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred ccHHHHHHHHHHCCCEEee
Confidence 2233444444442 54333
No 242
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.87 E-value=0.0048 Score=51.50 Aligned_cols=99 Identities=22% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCeEEeEcCCCC----hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-----------------
Q 029488 42 VKRVVDLCAAPG----SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------------- 91 (192)
Q Consensus 42 g~~vLDlG~GpG----~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~----------------- 91 (192)
.-+|.-.||++| +.+..+.+..+. ......+|+|.|++... +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~--------~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF 168 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGK--------LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYF 168 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhcc--------ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhE
Confidence 468999999999 456666666541 11136899999999520 0
Q ss_pred --------------CCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhc
Q 029488 92 --------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL 157 (192)
Q Consensus 92 --------------~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~L 157 (192)
...|.|-+.|+.+... ..+.||+|+|--..- ..++.. +..++......|
T Consensus 169 ~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--------~~~~fD~IfCRNVLI-----YFd~~~----q~~il~~f~~~L 231 (268)
T COG1352 169 ERGGDGSYRVKEELRKMVRFRRHNLLDDSP--------FLGKFDLIFCRNVLI-----YFDEET----QERILRRFADSL 231 (268)
T ss_pred eecCCCcEEEChHHhcccEEeecCCCCCcc--------ccCCCCEEEEcceEE-----eeCHHH----HHHHHHHHHHHh
Confidence 0135555666665431 235799999964211 123332 346677888999
Q ss_pred ccCCEEEE
Q 029488 158 KEGGKFIA 165 (192)
Q Consensus 158 kpgG~~v~ 165 (192)
+|||.|++
T Consensus 232 ~~gG~Lfl 239 (268)
T COG1352 232 KPGGLLFL 239 (268)
T ss_pred CCCCEEEE
Confidence 99999987
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.87 E-value=0.0036 Score=49.78 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C------CC--CceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P------IE--GVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--~------~~--~v~~~~~Di~~~~~~~~ 110 (192)
.|++|||+|+|+|--+...+... ...|++.|+.|.. . .. ++.+...|+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--------------A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g------ 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--------------AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG------ 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--------------hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC------
Confidence 48999999999999888877663 5789999998842 1 11 23444555544
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
++..||+|+..--+ ++.. .+..++. ....|+..|.-|+ ++++.+
T Consensus 139 -----~~~~~Dl~LagDlf-----y~~~------~a~~l~~-~~~~l~~~g~~vl-vgdp~R 182 (218)
T COG3897 139 -----SPPAFDLLLAGDLF-----YNHT------EADRLIP-WKDRLAEAGAAVL-VGDPGR 182 (218)
T ss_pred -----CCcceeEEEeecee-----cCch------HHHHHHH-HHHHHHhCCCEEE-EeCCCC
Confidence 34689999764221 1111 1123333 6778888888777 777654
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.078 Score=44.92 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=54.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~-~~~v~~~~~Di~~~~~~~ 109 (192)
+++...||.=-|-||.|..++...+ +.++++|+|.+|.+ . .+++++++++..+...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~------------~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-- 87 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLP------------DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-- 87 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCC------------CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH--
Confidence 5678999999999999999999986 67889999999842 1 3578888887665322
Q ss_pred HHHhhcCCCcccEEEeCC
Q 029488 110 VVIRHFDGCKADLVVCDG 127 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~ 127 (192)
........++|-|+.|.
T Consensus 88 -~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 88 -ALKELGIGKVDGILLDL 104 (314)
T ss_pred -HHHhcCCCceeEEEEec
Confidence 22223345788888885
No 245
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.62 E-value=0.0041 Score=49.85 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
.-.+.|||||-||+...|+... |...|+|.+|.-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-------------PdtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-------------PDTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccC-------------ccceeeeehhhH
Confidence 3479999999999999999998 588999999874
No 246
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.62 E-value=0.008 Score=48.51 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=66.4
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCccc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~D 121 (192)
.-++||+||=+..-..- .. +--.|++||+++.. ++ +.+.|..+.... .-+++.||
T Consensus 52 ~lrlLEVGals~~N~~s---~~-------------~~fdvt~IDLns~~--~~--I~qqDFm~rplp-----~~~~e~Fd 106 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TS-------------GWFDVTRIDLNSQH--PG--ILQQDFMERPLP-----KNESEKFD 106 (219)
T ss_pred cceEEeecccCCCCccc---cc-------------CceeeEEeecCCCC--CC--ceeeccccCCCC-----CCccccee
Confidence 36999999874332111 11 23579999999843 33 356677664321 01357999
Q ss_pred EEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCE-----EEEEec-------CCCChHHHHHHHHcc-CCee
Q 029488 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK-----FIAKIF-------RGKDTSLLYCQVNKM-LVKT 187 (192)
Q Consensus 122 lV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~-----~v~k~~-------~~~~~~~l~~~l~~~-f~~v 187 (192)
+|.+..-.+.. ++.. .....|..+.++|+|+|. |.+.+- +--+...+.+.|..+ |..+
T Consensus 107 vIs~SLVLNfV----P~p~----~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 107 VISLSLVLNFV----PDPK----QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred EEEEEEEEeeC----CCHH----HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEE
Confidence 99988643322 1211 123567889999999999 655332 112345556666664 5544
No 247
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.60 E-value=0.00028 Score=58.51 Aligned_cols=103 Identities=23% Similarity=0.279 Sum_probs=56.0
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-------------CC---
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-------------IE--- 93 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-------------~~--- 93 (192)
+|.++||+||||-... .++..- --.+|+..|..+.. . ++
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~~-------------~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSACE-------------WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGGG-------------TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred CCCEEEEeCCCcHHHh-hhhHHH-------------hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 4779999999995543 333321 13579999988620 0 00
Q ss_pred ------------Cc-eEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC
Q 029488 94 ------------GV-IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (192)
Q Consensus 94 ------------~v-~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg 160 (192)
.+ .++..|+++....... ..+| .++|+|++-......+ .+.+++ ..+++.+.++||||
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~-~~~p-~~~D~v~s~fcLE~a~-~d~~~y------~~al~ni~~lLkpG 192 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPP-VVLP-PKFDCVISSFCLESAC-KDLDEY------RRALRNISSLLKPG 192 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS--SS--SSEEEEEEESSHHHH--SSHHHH------HHHHHHHHTTEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCcc-ccCc-cchhhhhhhHHHHHHc-CCHHHH------HHHHHHHHHHcCCC
Confidence 12 2345677765432110 0012 2599999876432111 122333 46788899999999
Q ss_pred CEEEEE
Q 029488 161 GKFIAK 166 (192)
Q Consensus 161 G~~v~k 166 (192)
|+|++-
T Consensus 193 G~Lil~ 198 (256)
T PF01234_consen 193 GHLILA 198 (256)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999974
No 248
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.58 E-value=0.018 Score=49.52 Aligned_cols=97 Identities=24% Similarity=0.189 Sum_probs=65.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCC-CCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----API-EGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~----~~~-~~v~~~~~Di~~~~~~~~~~~ 113 (192)
|+.-...+|+|.|.|..+..+....+ ..+.+-.|+... ..+ ++|..+-||..+.
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp-------------~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-------- 233 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYP-------------HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-------- 233 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCC-------------CCceeecCHHHHHhhhhhhcCCcceeccccccc--------
Confidence 33458999999999999998888653 334444443321 224 7888888988874
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.| +-|+|..-. +.+.+..+ .+...|+.|.+.|+|||.++++..
T Consensus 234 -~P--~~daI~mkW---iLhdwtDe------dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 234 -TP--KGDAIWMKW---ILHDWTDE------DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -CC--CcCeEEEEe---ecccCChH------HHHHHHHHHHHhCCCCCEEEEEec
Confidence 23 556887643 22333222 235689999999999999998754
No 249
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.58 E-value=0.019 Score=40.47 Aligned_cols=95 Identities=24% Similarity=0.274 Sum_probs=57.9
Q ss_pred EEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------C--CC---ceEEecccCCchhHHHHHh
Q 029488 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I--EG---VIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 45 vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------~--~~---v~~~~~Di~~~~~~~~~~~ 113 (192)
++|+|||+|..+ .+..... ....++|+|.++... . .. +.+..+|..... .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG------------RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGV------L 112 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC------------CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCC------C
Confidence 999999999998 5555542 124899999887310 0 11 355666665410 0
Q ss_pred hcCC-CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC
Q 029488 114 HFDG-CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (192)
Q Consensus 114 ~~~~-~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~ 170 (192)
.+.. ..+|++.+....+.. . ....+..+.+.|+|+|.+++.....
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~-----~-------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLL-----P-------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred CCCCCCceeEEeeeeehhcC-----C-------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1222 378998332221110 0 2356778899999999999876543
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.52 E-value=0.023 Score=47.37 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=55.9
Q ss_pred CeEEeEcCCCC--hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCC--ceEEecccCCchhHH
Q 029488 43 KRVVDLCAAPG--SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG--VIQVQGDITNARTAE 109 (192)
Q Consensus 43 ~~vLDlG~GpG--~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~--v~~~~~Di~~~~~~~ 109 (192)
..+||||||=- +-.-.+++... |.++|+=||..|+. ..++ ..++++|+++++.+-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~------------P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA------------PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-------------TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC------------CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 57999999943 33455666665 78999999999952 2345 788999999976532
Q ss_pred H---HHhhcC-CCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 110 V---VIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 110 ~---~~~~~~-~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
. +...++ ++.+-+++....... .+.+.. ..++......|.||.++++.-.....
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v---~D~~dp------~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFV---PDDDDP------AGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS----CGCTH------HHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccC---CCccCH------HHHHHHHHHhCCCCceEEEEecCCCC
Confidence 1 222232 234445554332111 111111 35677788999999999996554443
No 251
>PRK10742 putative methyltransferase; Provisional
Probab=96.46 E-value=0.0062 Score=50.23 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=50.2
Q ss_pred cCCC--eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C----------C-CCceE
Q 029488 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------I-EGVIQ 97 (192)
Q Consensus 40 ~~g~--~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~----------~-~~v~~ 97 (192)
++|. +|||+-+|.|..+..++.+. +.|+++|.+|.. . + .+++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G---------------~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVG---------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 5677 89999999999999999883 679999999831 0 1 24555
Q ss_pred EecccCCchhHHHHHhhcCCCcccEEEeCCCCC
Q 029488 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 98 ~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~ 130 (192)
+.+|..+. + +..+ ..||+|..|+++.
T Consensus 150 ~~~da~~~-----L-~~~~-~~fDVVYlDPMfp 175 (250)
T PRK10742 150 IHASSLTA-----L-TDIT-PRPQVVYLDPMFP 175 (250)
T ss_pred EeCcHHHH-----H-hhCC-CCCcEEEECCCCC
Confidence 56666542 2 2233 3799999999754
No 252
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.45 E-value=0.0083 Score=50.23 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=67.8
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCc-eEEecccCCchhHHHHHhh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v-~~~~~Di~~~~~~~~~~~~ 114 (192)
..|..++|.|||.|-.... +|.+.++|.|+..... ..+- ....+|+.+. .
T Consensus 44 ~~gsv~~d~gCGngky~~~-----------------~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~--------p 98 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV-----------------NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKL--------P 98 (293)
T ss_pred CCcceeeecccCCcccCcC-----------------CCcceeeecchhhhhccccccCCCceeehhhhhcC--------C
Confidence 4589999999999854321 1578999999986321 1122 2345565553 3
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
.++.+||.+++-... .|+........++++..+.|||||..++.+|..+
T Consensus 99 ~~~~s~d~~lsiavi--------hhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 99 FREESFDAALSIAVI--------HHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CCCCccccchhhhhh--------hhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 456799999876432 2344445567889999999999999998887644
No 253
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.42 E-value=0.0018 Score=52.22 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=55.2
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCc-eEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGV-IQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~-~~~v-~~~~~Di~~~~~~~~ 110 (192)
..++||+|||-|..|..++-.. -.+|--||..+.- . ..++ .+.+.-+.+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--------------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~------ 115 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--------------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQD------ 115 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---------------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------
T ss_pred cceEEecccccchhHHHHHHHh--------------cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhh------
Confidence 4699999999999998765443 2578888877520 0 1222 222333333
Q ss_pred HHhhcC-CCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~-~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+.| ..++|+|-+.... | | .........|..|...|+|||.+++|.
T Consensus 116 ---f~P~~~~YDlIW~QW~l---g-----h-LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 116 ---FTPEEGKYDLIWIQWCL---G-----H-LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -------TT-EEEEEEES-G---G-----G-S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---ccCCCCcEeEEEehHhh---c-----c-CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 233 3699999987532 1 1 112222467889999999999999984
No 254
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.41 E-value=0.0042 Score=46.05 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=37.6
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCC
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~ 104 (192)
.++|+|||.|.++..+++.. +.++|+++|.+|.. ..+++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-------------~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-------------AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-------------CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999886 46799999999841 23457777776665
No 255
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.40 E-value=0.0025 Score=55.39 Aligned_cols=96 Identities=22% Similarity=0.158 Sum_probs=67.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~-~v~~~~~Di~~~~~ 107 (192)
.++.+++|+|||-|+.+.+++... .+.++|+|.++.. .+. ...++.+|+.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--------------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-- 172 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--------------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-- 172 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--------------cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC--
Confidence 578899999999999999999884 5899999999742 111 122244455442
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
.+++..||.+-+--. +.+..++ ..+++++.+++||||.++++.|
T Consensus 173 ------~fedn~fd~v~~ld~----~~~~~~~-------~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 173 ------PFEDNTFDGVRFLEV----VCHAPDL-------EKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ------CCCccccCcEEEEee----cccCCcH-------HHHHHHHhcccCCCceEEeHHH
Confidence 245678998865321 2222333 3578899999999999999765
No 256
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.39 E-value=0.0058 Score=45.84 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=33.0
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
.+...|+|+|||-|..+..++..++ ...+..+|+|+|.++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~---------~~~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLC---------NSSPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHH---------hcCCCCeEEEEECCcH
Confidence 5678999999999999999999442 0014789999999974
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.38 E-value=0.006 Score=46.03 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=50.3
Q ss_pred eEEEEeCCCCC-----------C-CCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHH
Q 029488 80 LIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147 (192)
Q Consensus 80 ~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~ 147 (192)
+|+|+|+++.+ . ..+++++.....+.. +.++++.+|+++-|...-..|.+..-. ...-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~------~~i~~~~v~~~iFNLGYLPggDk~i~T--~~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD------EYIPEGPVDAAIFNLGYLPGGDKSITT--KPETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG------GT--S--EEEEEEEESB-CTS-TTSB----HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH------hhCccCCcCEEEEECCcCCCCCCCCCc--CcHHHH
Confidence 58999999842 1 246888887776633 344546899999986422223232221 112235
Q ss_pred HHHHHHHHhcccCCEEEEEecCCCC
Q 029488 148 AGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 148 ~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
.+++.+++.|+|||.+++.++.+..
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCC
Confidence 7899999999999999998887654
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.21 E-value=0.019 Score=48.75 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=54.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~-~~~v~~~~~Di~~~~~~~ 109 (192)
++|..++|.=+|-||.|..+++..+ .++|+|+|.+|.+ . ..++.+++++..+...
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~-------------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~-- 83 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLG-------------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE-- 83 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH--
Confidence 5788999999999999999999874 4899999999842 1 1368888888776432
Q ss_pred HHHhhcCCCcccEEEeCC
Q 029488 110 VVIRHFDGCKADLVVCDG 127 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~ 127 (192)
........++|.|+.|.
T Consensus 84 -~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 84 -HLDELLVTKIDGILVDL 100 (305)
T ss_pred -HHHhcCCCcccEEEEec
Confidence 22222335799999995
No 259
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.94 E-value=0.03 Score=48.30 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=73.5
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------C------CC-----ceE
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I------EG-----VIQ 97 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---------~------~~-----v~~ 97 (192)
..+||+.|.|=-.|||++....+... +.|+|.||+-... + ++ +..
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FG---------------a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldv 269 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFG---------------AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDV 269 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhc---------------ceeeccccchheeecccCCCcchhHhHHHhCCcchhhhe
Confidence 34799999999999999998888763 7999999985310 0 11 334
Q ss_pred EecccCCchhHHHHHhhcCCCcccEEEeCCCCCCC--------------------CCc--cccHHHHHHHHHHHHHHHHH
Q 029488 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT--------------------GLH--DMDEFVQSQLILAGLTVVTH 155 (192)
Q Consensus 98 ~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~--------------------g~~--~~~~~~~~~l~~~~l~~a~~ 155 (192)
+.+|.+++.. ..+-.||.|+||++..+. +.+ ...++....+....+..+.+
T Consensus 270 l~~D~sn~~~-------rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~ 342 (421)
T KOG2671|consen 270 LTADFSNPPL-------RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR 342 (421)
T ss_pred eeecccCcch-------hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence 5677777642 234689999999852110 000 11233333455677888999
Q ss_pred hcccCCEEEEEe
Q 029488 156 VLKEGGKFIAKI 167 (192)
Q Consensus 156 ~LkpgG~~v~k~ 167 (192)
.|..||.+++-.
T Consensus 343 ~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 343 RLVDGGRLVFWL 354 (421)
T ss_pred hhhcCceEEEec
Confidence 999999999843
No 260
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.85 E-value=0.015 Score=48.55 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 29 l~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
|.|+..+..-++| .+|||+|||||.-+..+.+.++ ...+++++|.|+.
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~------------~~~~~~~vd~s~~ 69 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWP------------SLKEYTCVDRSPE 69 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhc------------CceeeeeecCCHH
Confidence 5555544433344 4899999999998888877765 3568999999973
No 261
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.76 E-value=0.21 Score=39.88 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=71.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----C-CCCceEEecccCCchhHHHHHhh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----~-~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
+...|++.|..-||-+.+.|..+- +.+...+|+++|++--. . .+++.+++++-+++.....+...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~---------s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMI---------SIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHH---------hcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 456999999999999998887653 33456899999988532 1 57899999999999876666554
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
-.+.+-=+|+.|.. +..+ ..++.++.-..+|.-|-++++.-
T Consensus 140 ~~~y~kIfvilDsd------Hs~~------hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 140 KNEYPKIFVILDSD------HSME------HVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred hcCCCcEEEEecCC------chHH------HHHHHHHHhhhHhhcCceEEEec
Confidence 33323223333321 1112 22455666678888899988754
No 262
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.011 Score=51.52 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=57.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~ 108 (192)
.+|..|+|.||.||.-+..++.... ..+.|+|.|.++.. ....++...+|.....+
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~------------n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~- 278 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMR------------NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTAT- 278 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhh------------ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCC-
Confidence 3588999999999999999998875 57999999999742 12233344666665321
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccc
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM 137 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~ 137 (192)
...-..+..|++|++++.+|.+..
T Consensus 279 -----~~~~~~v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 279 -----PEKFRDVTYILVDPSCSGSGMVSR 302 (413)
T ss_pred -----cccccceeEEEeCCCCCCCccccc
Confidence 112247889999999888887553
No 263
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.55 E-value=0.022 Score=46.30 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=49.5
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCceEEecccCCchhHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~-~~v~~~~~Di~~~~~~~ 109 (192)
...|+|.-||-||-+...+.+. +.|+++|++|.. .+ .+++|++||..+...-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~---------------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~- 158 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG---------------PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK- 158 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC---------------CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH-
Confidence 4578999999999888877774 699999999952 12 3789999999884321
Q ss_pred HHHhhcCCCcccEEEeCCCCC
Q 029488 110 VVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~ 130 (192)
.+ ++...+|+|...++..
T Consensus 159 --lq-~~K~~~~~vf~sppwg 176 (263)
T KOG2730|consen 159 --LK-ADKIKYDCVFLSPPWG 176 (263)
T ss_pred --Hh-hhhheeeeeecCCCCC
Confidence 11 2334577888776543
No 264
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.51 E-value=0.035 Score=50.20 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=67.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCce----EEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVI----QVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~~v~----~~~~Di~~~~~ 107 (192)
++..+|.|-+||+|++.......++.+. ....++|.|+++.. .+.++. ...+|-.....
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~---------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQ---------DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhc---------cceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 4677999999999999988888875210 03789999988631 112222 22333221110
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCcccc------H-------HHHHHHH-HHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMD------E-------FVQSQLI-LAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~------~-------~~~~~l~-~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
... ......||.|+++++++..+..... . .....-. .+.+..+...|+|||...+.+.
T Consensus 256 ~~~---~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 256 HDD---KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccc---cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 000 1123579999999987633322110 0 0001111 4668889999999986655443
No 265
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.47 E-value=0.27 Score=38.10 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred eEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C----------CCCceEE-ecccCCchhHH
Q 029488 47 DLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----------IEGVIQV-QGDITNARTAE 109 (192)
Q Consensus 47 DlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~----------~~~v~~~-~~Di~~~~~~~ 109 (192)
=+|-|.=+||..|+...+ ....|+|.-..... + ..+++.. ..|.++.....
T Consensus 2 lvGeGdfSFs~sL~~~~~------------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~ 69 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFG------------SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHF 69 (166)
T ss_pred eeeccchHHHHHHHHHcC------------CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccc
Confidence 367888889999998875 35678888776531 1 1345443 34777754211
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccH--HHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDE--FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~--~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
......||.|+=+.+....+..+... .....|....+..|..+|+++|.+.+...++..
T Consensus 70 ----~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 70 ----RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred ----cccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 12567899999997654322222221 123456678899999999999999997776644
No 266
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.34 E-value=0.071 Score=46.47 Aligned_cols=104 Identities=18% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------------CCCCceEEecccC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGDIT 103 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------------~~~~v~~~~~Di~ 103 (192)
-.+||=||-|-|-=.+.+.+. | ...+|+-||++|.. ..|+++.+..|..
T Consensus 290 a~~vLvlGGGDGLAlRellky-P------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf 356 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY-P------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF 356 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC-C------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH
Confidence 368999999988777776654 2 37899999999831 2468888889988
Q ss_pred CchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHH-HHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 104 ~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l-~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
++- +. ..+.||.|+.|.+- ++....-++ .......+.+.|+++|.+++..-+...
T Consensus 357 ~wl------r~-a~~~fD~vIVDl~D-------P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 357 QWL------RT-AADMFDVVIVDLPD-------PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred HHH------Hh-hcccccEEEEeCCC-------CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 752 11 24599999999641 111112222 235567788999999999997655443
No 267
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.25 E-value=0.24 Score=43.35 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=74.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCC--CC------------------------CCCCCCCCCeEEEEeCCCCC---
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK--LS------------------------PDSREGDLPLIVAIDLQPMA--- 90 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~--~~------------------------~~~~~~~~~~V~gvD~~~~~--- 90 (192)
+++..++|==||+|.+...+|.+..-.+- .+ ......+...++|+|+++-.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45679999999999999888877531100 00 00000111257799999831
Q ss_pred --------CC-CCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCC
Q 029488 91 --------PI-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG 161 (192)
Q Consensus 91 --------~~-~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG 161 (192)
.. +-++|.++|+++... .+ ..+|+|+||++- |.+-.++.....|.......+.+.++.-+
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~--~~~gvvI~NPPY---GeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE------PL--EEYGVVISNPPY---GERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC------CC--CcCCEEEeCCCc---chhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 22 247888999988532 12 589999999863 33333443333466666777778888888
Q ss_pred EEEEEe
Q 029488 162 KFIAKI 167 (192)
Q Consensus 162 ~~v~k~ 167 (192)
.+++..
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 888754
No 268
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.20 E-value=0.19 Score=38.34 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhcCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~~~ 117 (192)
..-|||+|-|+|---..|.+.. |..+|+.+|-.-.. ..+--.++.||+.+.- .. ...+ +
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~-------------p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl--~~-~~~~-g 91 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIF-------------PDRRIYVFDRALACHPSSTPPEEDLILGDIRETL--PA-LARF-G 91 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---------------SS-EEEEESS--S-GGG---GGGEEES-HHHHH--HH-HHHH--
T ss_pred CCceEEeccCCCccHHHHHHhC-------------CCCeEEEEeeecccCCCCCCchHheeeccHHHHh--HH-HHhc-C
Confidence 3589999999999999999998 47899999977432 2234567899997642 22 1223 4
Q ss_pred CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+.-++.+|... |..+.+ ......+=..+..+|.|||.+|.
T Consensus 92 ~~a~laHaD~G~---g~~~~d----~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 92 AGAALAHADIGT---GDKEKD----DATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp S-EEEEEE-------S-HHHH----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CceEEEEeecCC---CCcchh----HHHHHhhhHHHHHHhcCCcEEEe
Confidence 588999999642 222111 11111222345689999999886
No 269
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.54 E-value=0.7 Score=41.57 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=73.0
Q ss_pred cCCC-eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhH
Q 029488 40 EGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~-~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~ 108 (192)
.+.. +++-+|||.--++..+-+-. -..|+.+|+|+.. ..+...+...|+++..
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G--------------~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-- 109 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG--------------FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-- 109 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC--------------CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc--
Confidence 4555 99999999998888877653 4689999999831 1245677788888753
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+++.+||.|+.=|..+..-......+ ........+.++.++|++||+++..++
T Consensus 110 ------fedESFdiVIdkGtlDal~~de~a~~-~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 110 ------FEDESFDIVIDKGTLDALFEDEDALL-NTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------CCCcceeEEEecCccccccCCchhhh-hhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 56789999998776543321111111 112234567889999999999877655
No 270
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.54 E-value=0.066 Score=44.71 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=46.6
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhhcCC
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~~~~ 117 (192)
+|+||.||.|+++.-+.+.. -..|.++|+++.+ ..+.. .+.+|+.+.... .+ .
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--------------~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~-----~~-~ 60 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--------------FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEK-----DF-I 60 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--------------CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchh-----hc-C
Confidence 79999999999998887652 3568999999852 12332 567888875421 11 2
Q ss_pred CcccEEEeCCCCC
Q 029488 118 CKADLVVCDGAPD 130 (192)
Q Consensus 118 ~~~DlV~~d~~~~ 130 (192)
..+|+++.++++.
T Consensus 61 ~~~D~l~~gpPCq 73 (275)
T cd00315 61 PDIDLLTGGFPCQ 73 (275)
T ss_pred CCCCEEEeCCCCh
Confidence 4799999998653
No 271
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.39 E-value=0.46 Score=41.18 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred ccCCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCceEEecccCCc-hhHHHH
Q 029488 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNA-RTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----~~~~v~~~~~Di~~~-~~~~~~ 111 (192)
+++|.+||..|||+ |..+..+++..+ ..+|+++|.++.. ...++..+. ..+. .....+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-------------~~~vi~~~~~~~~~~~~~~~~~~~vi~--~~~~~~~~~~l 246 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-------------AERVIAIDRVPERLEMARSHLGAETIN--FEEVDDVVEAL 246 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEEEc--CCcchHHHHHH
Confidence 46789999999877 667777777764 3469999987632 111232222 1221 133344
Q ss_pred HhhcCCCcccEEEeCCCCCCC--CCccc-cHH-HHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVT--GLHDM-DEF-VQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~--g~~~~-~~~-~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
....++..+|+|+.-...... ..++. ++. .........+..+.+.|+++|.++..
T Consensus 247 ~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 247 RELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 444555679999864211000 00000 000 00000123567788999999999874
No 272
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.21 E-value=0.26 Score=38.18 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCccc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~D 121 (192)
|++.+=+|+. =-|.+.++-..+ ...|+-|+.++...-+..+.....+...+...+..+ . ..+||
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~G-------------A~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~-y-~~~fD 65 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHG-------------AAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQK-Y-AGSFD 65 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcC-------------CceEEEEeecccccCcccccccccccHHHHHHHHHH-h-hccch
Confidence 5677778877 567777776654 678999998864321111111112222233333222 2 35899
Q ss_pred EEEeCCCCCCCCCccc-cHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 122 LVVCDGAPDVTGLHDM-DEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 122 lV~~d~~~~~~g~~~~-~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+.|-.+....|.-.- |....... ..++..+.++|||||.|++.+
T Consensus 66 ~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 66 FAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEe
Confidence 9988776544443211 11111111 245667889999999998865
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.99 E-value=0.036 Score=48.01 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=27.0
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
.+++||+|.|||.-...+.+.++ ....++-++.+|.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~P------------dl~sa~ile~sp~ 149 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWP------------DLKSAVILEASPA 149 (484)
T ss_pred cchhhccCCCCchhhhhhcccCC------------CchhhhhhccCHH
Confidence 45799999999998888877775 4455666667763
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.98 E-value=0.52 Score=40.64 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=59.8
Q ss_pred cCCCeEEeEcCCCChHHHH-HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCCchhHHHHHh
Q 029488 40 EGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.++.+|+=+||||=|.... +++.. ...+|+++|.++... .-+...+...-.+ .....+.+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-------------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~ 232 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-------------GASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILE 232 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-------------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHH
Confidence 3455999999999888754 44444 478999999997421 1122222211111 22223333
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
...+..+|+++- +.|. ..++..+..++||||++++.-
T Consensus 233 ~t~g~g~D~vie-----~~G~------------~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 233 LTGGRGADVVIE-----AVGS------------PPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred HhCCCCCCEEEE-----CCCC------------HHHHHHHHHHhcCCCEEEEEe
Confidence 344458999984 2331 136788999999999998753
No 275
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.79 E-value=0.55 Score=38.27 Aligned_cols=93 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~----------~~~~~v~~~~~Di~~~~~~~ 109 (192)
.+|.+||.+|=|=|.....+-+.- |..+ +-++-.|. ..-+||....|-..+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-------------p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD----- 160 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-------------PDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWED----- 160 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-------------Ccce-EEEecCHHHHHHHHhcccccccceEEEecchHh-----
Confidence 679999999999999888887764 2334 34565652 112577777775544
Q ss_pred HHHhhcCCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 110 VVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
+...++++.||-|.-|-- +. + .........+.++|||+|.|-
T Consensus 161 -vl~~L~d~~FDGI~yDTy~e~---------y---Edl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 161 -VLNTLPDKHFDGIYYDTYSEL---------Y---EDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred -hhccccccCcceeEeechhhH---------H---HHHHHHHHHHhhhcCCCceEE
Confidence 334577889999998841 11 1 111234457889999999864
No 276
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.79 E-value=0.48 Score=40.68 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=62.2
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCC--chhH-HHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITN--ARTA-EVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~--~~~~-~~~ 111 (192)
+++|.+||=+||||=|....+..+.- ...+|+.+|+.+... --|++.+.-+-.. .+.. ..+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~------------GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAM------------GASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELV 234 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHc------------CCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHH
Confidence 46799999999999887655544432 378999999997421 1233333222211 1221 222
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
...+....+|..+. ++|.+ ..++.+...+|.||++++-.+..+
T Consensus 235 ~~~~g~~~~d~~~d-----CsG~~------------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 235 EKALGKKQPDVTFD-----CSGAE------------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred HhhccccCCCeEEE-----ccCch------------HHHHHHHHHhccCCEEEEeccCCC
Confidence 23344455777663 34422 345678899999999777655443
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.72 E-value=0.42 Score=41.28 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=54.9
Q ss_pred ccCCCeEEeEcCC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCce-EEecccCCchhHHHHH
Q 029488 39 FEGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITNARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~G-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~-~~~~Di~~~~~~~~~~ 112 (192)
.+||++|+=.|+| -|..+.-++..+ ..+|+++|.++... --+.. ++... +.+....+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--------------ga~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~ 227 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--------------GAEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVK 227 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--------------CCeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhH
Confidence 3689999999988 223334445444 48999999998521 11222 22222 333333222
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+ .+|+|+.-.+ . ..+..+.+.||+||++++-
T Consensus 228 ~-----~~d~ii~tv~-~-----------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 228 E-----IADAIIDTVG-P-----------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred h-----hCcEEEECCC-h-----------------hhHHHHHHHHhcCCEEEEE
Confidence 2 3999997542 1 3466788999999999884
No 278
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.68 E-value=0.098 Score=37.74 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=26.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
++...++|||||+|-..-.|... +..-.|+|...
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E---------------Gy~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE---------------GYPGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC---------------CCCcccccccc
Confidence 45668999999999888777765 35677888764
No 279
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.67 E-value=0.43 Score=40.70 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=48.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~ 109 (192)
+++..+||.=-|.||.|..+++..+ .++++|+|.+|.+ ...++.+++++..+...
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~-------------~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~-- 83 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLP-------------NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE-- 83 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-T-------------T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred CCCceEEeecCCcHHHHHHHHHhCC-------------CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence 6788999999999999999999985 5999999999842 13578888888877432
Q ss_pred HHHhhc-CCCcccEEEeCC
Q 029488 110 VVIRHF-DGCKADLVVCDG 127 (192)
Q Consensus 110 ~~~~~~-~~~~~DlV~~d~ 127 (192)
..... ....+|-|+.|.
T Consensus 84 -~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 -YLKELNGINKVDGILFDL 101 (310)
T ss_dssp -HHHHTTTTS-EEEEEEE-
T ss_pred -HHHHccCCCccCEEEEcc
Confidence 22223 345899999995
No 280
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.60 E-value=0.14 Score=44.71 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=31.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
+.+-+.|+|+|+|+|..++.++-.++ -.|+|||.+.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~--------------lsV~aIegsq 186 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYG--------------LSVKAIEGSQ 186 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccC--------------ceEEEeccch
Confidence 34567999999999999999998874 7999999985
No 281
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.60 E-value=0.021 Score=46.11 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------CCCceEEecccCCchhHHHHHhhc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
..++||||+|.|-.+..++... .+|+|.++|.-.. -.||-- .-+..+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---------------eevyATElS~tMr~rL~kk~ynVl~-~~ew~~----------- 165 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---------------EEVYATELSWTMRDRLKKKNYNVLT-EIEWLQ----------- 165 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---------------HHHHHHHhhHHHHHHHhhcCCceee-ehhhhh-----------
Confidence 4799999999999999998776 4799999886211 123210 011111
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhccc-CCEEEEE
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKE-GGKFIAK 166 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkp-gG~~v~k 166 (192)
.+-++|+|+|---.+. .+. ...+|+.+..+|+| +|..++.
T Consensus 166 t~~k~dli~clNlLDR-------c~~----p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 TDVKLDLILCLNLLDR-------CFD----PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCceeehHHHHHHHHh-------hcC----hHHHHHHHHHHhccCCCcEEEE
Confidence 1237899887321110 011 13578888999999 8887664
No 282
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.27 E-value=0.46 Score=39.89 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCeEEeEcCCCChHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C-----CCCceEEecccCCchh
Q 029488 42 VKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-----IEGVIQVQGDITNART 107 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~-~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~-----~~~v~~~~~Di~~~~~ 107 (192)
..+|+=+||||=-+|..... ..+ +...|+++|+++.+ . -.+++++.+|..+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~------------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~ 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG------------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT------------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G
T ss_pred cceEEEEcCCCcchHHHHHHHHhC------------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc
Confidence 35999999999999966554 333 46789999999842 1 2468899999876421
Q ss_pred HHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+-..||.|+....... ..+ -...++....+.++||..+++..-
T Consensus 189 --------dl~~~DvV~lAalVg~-----~~e-----~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 189 --------DLKEYDVVFLAALVGM-----DAE-----PKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp --------G----SEEEE-TT-S--------------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred --------ccccCCEEEEhhhccc-----ccc-----hHHHHHHHHHhhCCCCcEEEEecc
Confidence 1248999987643110 000 113678888999999999998753
No 283
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.22 E-value=0.41 Score=40.61 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=79.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCCc
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~~ 105 (192)
..++||=+|-|-|++.......- --+.|.-+|+..+. ..+++....||=..
T Consensus 121 npkkvlVVgggDggvlrevikH~-------------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~- 186 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK-------------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL- 186 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc-------------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH-
Confidence 46799999999999997766652 24677777776531 13567777776554
Q ss_pred hhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe---cCC-CChHHHHHHHH
Q 029488 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI---FRG-KDTSLLYCQVN 181 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~---~~~-~~~~~l~~~l~ 181 (192)
+.+..+.++||+|+.|-+-. .| .......+..+....+.||+||+.++.- |-. .-..++....+
T Consensus 187 -----fl~~~~~~~~dVii~dssdp-vg------pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~ 254 (337)
T KOG1562|consen 187 -----FLEDLKENPFDVIITDSSDP-VG------PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCY 254 (337)
T ss_pred -----HHHHhccCCceEEEEecCCc-cc------hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHH
Confidence 34455678999999986411 11 1222334567888999999999998743 111 11345555666
Q ss_pred ccCCeee
Q 029488 182 KMLVKTP 188 (192)
Q Consensus 182 ~~f~~v~ 188 (192)
..|..|.
T Consensus 255 ~~f~~t~ 261 (337)
T KOG1562|consen 255 VIFDLTA 261 (337)
T ss_pred HhcCccc
Confidence 6777554
No 284
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.96 E-value=1.3 Score=36.93 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=55.3
Q ss_pred CcccCCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHH
Q 029488 37 NIFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 37 ~~l~~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~ 111 (192)
..++++.+||..|+|. |..+..+++.. ...|++++.++... ..++..+..+. +......+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~--------------G~~V~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 225 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM--------------GAAVIAVDIKEEKLELAKELGADEVLNSL-DDSPKDKK 225 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--------------CCEEEEEcCCHHHHHHHHHhCCCEEEcCC-CcCHHHHH
Confidence 3357888999977542 44555556654 36799998776321 01222222211 11222222
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
....+..+|+|+..... ...+..+.+.|+++|.++..
T Consensus 226 -~~~~~~~~D~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 -AAGLGGGFDVIFDFVGT-----------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -HHhcCCCceEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 33455689998853210 12456778999999999874
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.93 E-value=1.4 Score=35.94 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=59.4
Q ss_pred HcCccc--CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------
Q 029488 35 EFNIFE--GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------- 90 (192)
Q Consensus 35 ~~~~l~--~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------------- 90 (192)
.+.++. .+-.+-|-|||.|.....+.-..+. --..|+|-|+++..
T Consensus 43 ~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~-----------~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 43 ALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR-----------RLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG-----------GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH-----------HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 445442 3458999999999999876654331 24679999999620
Q ss_pred -------------------------------CCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccH
Q 029488 91 -------------------------------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139 (192)
Q Consensus 91 -------------------------------~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~ 139 (192)
..+-....+.|++++....... .+...|+|+.|.+..- +-.++.
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~~~~diViTDlPYG~--~t~W~g 186 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AGFTPDIVITDLPYGE--MTSWQG 186 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT---SEEEEE--CCC--SSSTTS
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cCCCCCEEEecCCCcc--cccccC
Confidence 0112446788999977654432 2345799999976321 111221
Q ss_pred HHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 140 FVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 140 ~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..+..=....|.....+| |+..+|+.
T Consensus 187 ~~~~~p~~~ml~~l~~vL-p~~sVV~v 212 (246)
T PF11599_consen 187 EGSGGPVAQMLNSLAPVL-PERSVVAV 212 (246)
T ss_dssp ---HHHHHHHHHHHHCCS--TT-EEEE
T ss_pred CCCCCcHHHHHHHHHhhC-CCCcEEEE
Confidence 112222345677788888 77666664
No 286
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=0.14 Score=39.82 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=61.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C-----CCceEE--ecccCCchhHHHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I-----EGVIQV--QGDITNARTAEVVI 112 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~-----~~v~~~--~~Di~~~~~~~~~~ 112 (192)
|.+||+||.|-=+.+-.+..... +...|.-.|-+.... . .|...- ..-+.... ....+
T Consensus 30 g~~ilelgggft~laglmia~~a------------~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~-~~~aq 96 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKA------------PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL-IWGAQ 96 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeec------------CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH-HhhhH
Confidence 78999999887666655544432 577888888776321 0 111000 00011110 01111
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHH
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVN 181 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~ 181 (192)
.......||.|+|.-..- .+++ +..+...+.+.|+|.|.-+ +|.+.+-+.|.+++.
T Consensus 97 sq~eq~tFDiIlaADClF------fdE~-----h~sLvdtIk~lL~p~g~Al--~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 97 SQQEQHTFDIILAADCLF------FDEH-----HESLVDTIKSLLRPSGRAL--LFSPRRGQSLQKFLD 152 (201)
T ss_pred HHHhhCcccEEEeccchh------HHHH-----HHHHHHHHHHHhCccccee--EecCcccchHHHHHH
Confidence 122345899999853210 2222 3467788899999999933 455554444444443
No 287
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.74 E-value=0.32 Score=41.30 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CC-CCceEEec----ccCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQG----DITN 104 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~-~~v~~~~~----Di~~ 104 (192)
.-++||+|+|.-.+--.|..+.. .++++|.|+++.. .+ .+++.... ++.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-------------~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~ 169 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-------------GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFD 169 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---------------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTT
T ss_pred ceEeecCCccHHHHHHHHhhhhc-------------CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccch
Confidence 35899999999988766655542 6899999999831 12 24544422 2322
Q ss_pred chhHHHHHhhcCCCcccEEEeCCCCCCC
Q 029488 105 ARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (192)
Q Consensus 105 ~~~~~~~~~~~~~~~~DlV~~d~~~~~~ 132 (192)
.- ..+++.||+.+|++++..+
T Consensus 170 ~i-------~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 170 GI-------IQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp TS-------TT--S-EEEEEE-----SS
T ss_pred hh-------hcccceeeEEecCCccccC
Confidence 11 0124589999999987543
No 288
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.73 E-value=0.082 Score=44.21 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=45.5
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------CCCceEEecccCCchhHHHHHhhcC
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIRHFD 116 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------~~~v~~~~~Di~~~~~~~~~~~~~~ 116 (192)
.+++||.||-||++.-+.+.. -..+.|+|+++.+. .+ ....+|+++.... .++
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag--------------~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~ 59 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAG--------------FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLP 59 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTT--------------EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHH
T ss_pred CcEEEEccCccHHHHHHHhcC--------------cEEEEEeecCHHHHHhhhhccc--ccccccccccccc-----ccc
Confidence 379999999999999988763 25799999998531 23 6778999987543 344
Q ss_pred CCcccEEEeCCCC
Q 029488 117 GCKADLVVCDGAP 129 (192)
Q Consensus 117 ~~~~DlV~~d~~~ 129 (192)
. .+|+++.-++|
T Consensus 60 ~-~~D~l~ggpPC 71 (335)
T PF00145_consen 60 K-DVDLLIGGPPC 71 (335)
T ss_dssp H-T-SEEEEE---
T ss_pred c-cceEEEeccCC
Confidence 4 59999988764
No 289
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.38 E-value=0.35 Score=37.98 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=30.1
Q ss_pred ccEEEeCCCCCCCCC-------c-cccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 120 ADLVVCDGAPDVTGL-------H-DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 120 ~DlV~~d~~~~~~g~-------~-~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+|+|+.|++...... . +.+...-.......+.++.++|||||.+++.+-.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecc
Confidence 589999987543222 0 1112222445677899999999999999886544
No 290
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.14 E-value=0.39 Score=39.47 Aligned_cols=97 Identities=15% Similarity=0.028 Sum_probs=46.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~ 109 (192)
.|+++|=+| -.-.+..++...+ +..+|+-+|+..- ..++ +.....|++++
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~------------~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~---- 104 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTG------------LPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP---- 104 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--------------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS-----
T ss_pred cCCEEEEEc--CCcHHHHHHHhhC------------CCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc----
Confidence 478898777 5555555444544 5689999999972 1233 77788899885
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~ 170 (192)
+++.+. ++||+++.|++-. .+. . .-.+.-+...||.-|......+..
T Consensus 105 -LP~~~~-~~fD~f~TDPPyT------~~G---~---~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 105 -LPEELR-GKFDVFFTDPPYT------PEG---L---KLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp ---TTTS-S-BSEEEE---SS------HHH---H---HHHHHHHHHTB-STT-EEEEEE-T
T ss_pred -CCHHHh-cCCCEEEeCCCCC------HHH---H---HHHHHHHHHHhCCCCceEEEEEec
Confidence 334343 5999999998632 111 1 234566778888877443334433
No 291
>PHA01634 hypothetical protein
Probab=91.52 E-value=0.36 Score=36.09 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=35.3
Q ss_pred HhHcCcc-cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 33 DEEFNIF-EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 33 ~~~~~~l-~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
.+.+..+ -.+++|+|+|++-|.-+.+.+-+. ...|++++.++.
T Consensus 19 ~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~G--------------AK~Vva~E~~~k 62 (156)
T PHA01634 19 PHAYGMLNVYQRTIQIVGADCGSSALYFLLRG--------------ASFVVQYEKEEK 62 (156)
T ss_pred HHHhhheeecCCEEEEecCCccchhhHHhhcC--------------ccEEEEeccCHH
Confidence 4445545 368999999999999999998874 689999999873
No 292
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.40 E-value=1.7 Score=37.16 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=53.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++|++||=.|+ |+....+.+.... ... .|+++|.++... -.++..+ -|..+.+....+.+
T Consensus 174 ~~~g~~VlV~G~--g~vG~~a~~~ak~-----------~G~~~Vi~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~i~~ 239 (358)
T TIGR03451 174 VKRGDSVAVIGC--GGVGDAAIAGAAL-----------AGASKIIAVDIDDRKLEWAREFGATHT-VNSSGTDPVEAIRA 239 (358)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEcCCHHHHHHHHHcCCceE-EcCCCcCHHHHHHH
Confidence 468999998875 5565554433220 124 599999876321 1122111 12233333344444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|+|+-- .|. ...+..+.+.|++||.+++.
T Consensus 240 ~~~~~g~d~vid~-----~g~------------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 240 LTGGFGADVVIDA-----VGR------------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HhCCCCCCEEEEC-----CCC------------HHHHHHHHHHhccCCEEEEE
Confidence 4455579998842 121 02345677899999999874
No 293
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=91.12 E-value=0.12 Score=42.41 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=41.9
Q ss_pred cCCC--eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------C-----CCCceE
Q 029488 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------P-----IEGVIQ 97 (192)
Q Consensus 40 ~~g~--~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~-----~~~v~~ 97 (192)
++|. +|||.=+|-|.-+..++.. | ++|++++.+|.. . +.+++.
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA~~-G--------------~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l 136 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLASL-G--------------CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQL 136 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHHHH-T----------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEE
T ss_pred CCCCCCEEEECCCcchHHHHHHHcc-C--------------CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEE
Confidence 5553 8999999999999999965 3 789999999841 1 136778
Q ss_pred EecccCCchhHHHHHhhcCCCcccEEEeCCCCC
Q 029488 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 98 ~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~ 130 (192)
+++|..+.- . .+..++|+|..|+.+.
T Consensus 137 ~~~d~~~~L------~-~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 137 IHGDALEYL------R-QPDNSFDVVYFDPMFP 162 (234)
T ss_dssp EES-CCCHC------C-CHSS--SEEEE--S--
T ss_pred EcCCHHHHH------h-hcCCCCCEEEECCCCC
Confidence 888887742 1 3457999999998764
No 294
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.01 E-value=0.72 Score=38.37 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=52.4
Q ss_pred HHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CC---CCceE
Q 029488 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---EGVIQ 97 (192)
Q Consensus 29 l~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~---~~v~~ 97 (192)
|....+...++++...++|+|||.|.+|.++++..... ..+...++.||..... .. +.+.-
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--------~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R 77 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--------KPSNSRFVLIDRASNRHKADNKIRKDESEPKFER 77 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--------ccCCccEEEEecCcccccchhhhhccCCCCceEE
Confidence 56666778888889999999999999999999987411 1135789999987531 11 24566
Q ss_pred EecccCCchh
Q 029488 98 VQGDITNART 107 (192)
Q Consensus 98 ~~~Di~~~~~ 107 (192)
+..||.+...
T Consensus 78 ~riDI~dl~l 87 (259)
T PF05206_consen 78 LRIDIKDLDL 87 (259)
T ss_pred EEEEeeccch
Confidence 7889988754
No 295
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.00 E-value=2 Score=35.16 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=58.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC--CCCCC---CCceEEecccCCchhHHHHHhh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--PMAPI---EGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~--~~~~~---~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
...+.||=.||..||+.-.++..... .++.|+|.-.+ +|..+ .|+....-|+++++....+...
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~-----------~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~e 73 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFAR-----------NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGE 73 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHh-----------CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHH
Confidence 45679999999999999988887652 47899999765 34433 3666678899988765555443
Q ss_pred ---cCCCcccEEEeCCCC
Q 029488 115 ---FDGCKADLVVCDGAP 129 (192)
Q Consensus 115 ---~~~~~~DlV~~d~~~ 129 (192)
.++++.|+.+-|..-
T Consensus 74 vr~~~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 74 VRANPDGKLDLLYNNAGQ 91 (289)
T ss_pred HhhCCCCceEEEEcCCCC
Confidence 367899999988643
No 296
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.62 E-value=1 Score=37.66 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=27.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
...+||==|||-|..+-.++.+. -.+.|.|.|.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---------------~~~~gnE~S~ 88 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---------------YAVQGNEFSY 88 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---------------ceEEEEEchH
Confidence 35799999999999999999883 5888888774
No 297
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.62 E-value=1.5 Score=32.51 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=48.2
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCccc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~D 121 (192)
..+++++|-|.=--....++.. +..|+++|+.+.....++.++..|++++... .. ...|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--------------G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~-----iY--~~a~ 72 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--------------GFDVIATDINPRKAPEGVNFVVDDIFNPNLE-----IY--EGAD 72 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--------------S-EEEEE-SS-S----STTEE---SSS--HH-----HH--TTEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc--------------CCcEEEEECcccccccCcceeeecccCCCHH-----Hh--cCCc
Confidence 4499999988655444444443 3799999999974447999999999997631 12 3899
Q ss_pred EEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCCh
Q 029488 122 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (192)
Q Consensus 122 lV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~ 173 (192)
+|-|--+|. .+ +..+++.|. +-|.-++++.+..+..
T Consensus 73 lIYSiRPP~-----El--------~~~il~lA~---~v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 73 LIYSIRPPP-----EL--------QPPILELAK---KVGADLIIRPLGGESP 108 (127)
T ss_dssp EEEEES--T-----TS--------HHHHHHHHH---HHT-EEEEE-BTTB--
T ss_pred EEEEeCCCh-----HH--------hHHHHHHHH---HhCCCEEEECCCCCCC
Confidence 999864331 11 123344443 3477788877665543
No 298
>PRK08177 short chain dehydrogenase; Provisional
Probab=90.58 E-value=7.1 Score=30.70 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=50.8
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCCchhHHHHHhhcCCC
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~~~~~~~~~~~~~~~ 118 (192)
++|=.|+ +|+.+..+++++.. .+.+|++++.++... ..++.+...|+.+.+...++.+.+.+.
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-----------RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-----------CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 4555554 67777777766531 356899999887421 235677889999987777776666556
Q ss_pred cccEEEeCCC
Q 029488 119 KADLVVCDGA 128 (192)
Q Consensus 119 ~~DlV~~d~~ 128 (192)
.+|.|+.+..
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 8999998863
No 299
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.42 E-value=0.62 Score=33.48 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=55.9
Q ss_pred CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhcCCCcccEEEeCC
Q 029488 52 PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (192)
Q Consensus 52 pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~ 127 (192)
-|.++..+++..+ .+|+++|.++... --++.. ..|..+.+....+.+..++..+|+|+--.
T Consensus 2 vG~~a~q~ak~~G--------------~~vi~~~~~~~k~~~~~~~Ga~~-~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--------------AKVIATDRSEEKLELAKELGADH-VIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHTT--------------SEEEEEESSHHHHHHHHHTTESE-EEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred hHHHHHHHHHHcC--------------CEEEEEECCHHHHHHHHhhcccc-cccccccccccccccccccccceEEEEec
Confidence 3667777777763 8999999987321 123221 22334444556666666667899998532
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCC
Q 029488 128 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 170 (192)
Q Consensus 128 ~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~ 170 (192)
|. ...+..+.++|+++|++++.-...
T Consensus 67 -----g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 -----GS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -----SS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -----Cc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 21 145678889999999999864443
No 300
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.13 E-value=0.87 Score=33.32 Aligned_cols=65 Identities=25% Similarity=0.196 Sum_probs=45.6
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccE
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~Dl 122 (192)
.+|+++|.| -+...+..... -+..|+++|+++.....++.+...|++++... +. ...|+
T Consensus 15 gkVvEVGiG--~~~~VA~~L~e------------~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~------iY-~~A~l 73 (129)
T COG1255 15 GKVVEVGIG--FFLDVAKRLAE------------RGFDVLATDINEKTAPEGLRFVVDDITNPNIS------IY-EGADL 73 (129)
T ss_pred CcEEEEccc--hHHHHHHHHHH------------cCCcEEEEecccccCcccceEEEccCCCccHH------Hh-hCccc
Confidence 399999976 34433333221 24899999999975557899999999997531 22 47899
Q ss_pred EEeCCC
Q 029488 123 VVCDGA 128 (192)
Q Consensus 123 V~~d~~ 128 (192)
|-|--+
T Consensus 74 IYSiRp 79 (129)
T COG1255 74 IYSIRP 79 (129)
T ss_pred eeecCC
Confidence 988643
No 301
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.02 E-value=0.45 Score=37.37 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=26.8
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
++|+.|||--||+|+-+..+.+.. -+.+|+|+++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~---------------R~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELG---------------RRYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT----------------EEEEEESSH
T ss_pred ccceeeehhhhccChHHHHHHHcC---------------CeEEEEeCCH
Confidence 689999999999999988887775 4899999986
No 302
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=88.74 E-value=0.6 Score=38.62 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=29.2
Q ss_pred hHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 34 ~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
+.|..+.+..+|+|||||-=-++....... +...++|.|++.
T Consensus 98 ~if~~~~~p~sVlDigCGlNPlalp~~~~~-------------~~a~Y~a~DID~ 139 (251)
T PF07091_consen 98 EIFGRIPPPDSVLDIGCGLNPLALPWMPEA-------------PGATYIAYDIDS 139 (251)
T ss_dssp HHCCCS---SEEEEET-TTCHHHHHTTTSS-------------TT-EEEEEESBH
T ss_pred HHHhcCCCCchhhhhhccCCceehhhcccC-------------CCcEEEEEeCCH
Confidence 344555668899999999999888766443 467999999997
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.65 E-value=7.9 Score=30.68 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=54.9
Q ss_pred cCcccCCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHH
Q 029488 36 FNIFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEV 110 (192)
Q Consensus 36 ~~~l~~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~ 110 (192)
...++++.+||-.|+|+ |..+..+++.. ..+|++++.++... . .+.... .|..+......
T Consensus 129 ~~~~~~~~~vli~g~~~~G~~~~~~a~~~--------------g~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 193 (271)
T cd05188 129 AGVLKPGDTVLVLGAGGVGLLAAQLAKAA--------------GARVIVTDRSDEKLELAKELGADHV-IDYKEEDLEEE 193 (271)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc--------------CCeEEEEcCCHHHHHHHHHhCCcee-ccCCcCCHHHH
Confidence 33447899999999886 33444455443 37899998875210 0 111111 12222222222
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+. ...+..+|+|+....- . .....+.+.|+++|.++..
T Consensus 194 ~~-~~~~~~~d~vi~~~~~-----~------------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 194 LR-LTGGGGADVVIDAVGG-----P------------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred HH-HhcCCCCCEEEECCCC-----H------------HHHHHHHHhcccCCEEEEE
Confidence 22 2345689999864321 0 2345567899999999874
No 304
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.60 E-value=3.4 Score=35.46 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=52.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++|++||=.|+| +....+.+.... ... .|+++|.++... --++..+ -|..+......+.+
T Consensus 189 i~~g~~VlV~G~G--~vG~~a~~lak~-----------~G~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~~~~~~~i~~ 254 (371)
T cd08281 189 VRPGQSVAVVGLG--GVGLSALLGAVA-----------AGASQVVAVDLNEDKLALARELGATAT-VNAGDPNAVEQVRE 254 (371)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHH-----------cCCCcEEEEcCCHHHHHHHHHcCCceE-eCCCchhHHHHHHH
Confidence 4678888888864 555444333210 134 699999876321 1132211 12222233333444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++ .+|+|+--. |. ...+..+.+.|+++|++++.
T Consensus 255 ~~~~-g~d~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 255 LTGG-GVDYAFEMA-----GS------------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HhCC-CCCEEEECC-----CC------------hHHHHHHHHHHhcCCEEEEE
Confidence 4444 799998421 11 12456678899999999864
No 305
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.91 E-value=4.2 Score=37.12 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=59.4
Q ss_pred cCCCeEEeEcCCCChHHHH-HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCc---------
Q 029488 40 EGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNA--------- 105 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~--------- 105 (192)
.++.+|+=+|||+=|.... .+...+ +.|+++|.++... --+.++..-|..+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--------------A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--------------AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhh
Confidence 4789999999999887654 555543 5899999997421 12454433222110
Q ss_pred ----hhHHHHHhhcCC--CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 106 ----RTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 106 ----~~~~~~~~~~~~--~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+......+.+.+ ..+|+|+.-.... +...+ ....+++.+.+||||.++..-.
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~p--g~~aP---------~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIP--GKPAP---------KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCC--cccCc---------chHHHHHHHhcCCCCEEEEEcc
Confidence 111111122221 4699998754211 10001 0124778899999999887543
No 306
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.62 E-value=0.25 Score=43.76 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=33.8
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++++|..|.|++||-|-|+..++.. .+.|++.|++|.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK---------------~crV~aNDLNpe 282 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK---------------GCRVYANDLNPE 282 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc---------------CcEEEecCCCHH
Confidence 5789999999999999999999887 489999999984
No 307
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.60 E-value=4.4 Score=34.41 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=50.4
Q ss_pred ccCCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCc---hhHHH
Q 029488 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNA---RTAEV 110 (192)
Q Consensus 39 l~~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~---~~~~~ 110 (192)
+++|.+||=.|+|+ |..+..+++.. ..+|+++|.++... -.++... -|..+. +....
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--------------G~~vi~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~~~~ 228 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--------------GAAVVAIDIDPEKLEMMKGFGADLT-LNPKDKSAREVKKL 228 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--------------CCeEEEEcCCHHHHHHHHHhCCceE-ecCccccHHHHHHH
Confidence 46799999999844 22333444444 35799998876321 0122211 111111 12222
Q ss_pred HHhhcCCCccc----EEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKAD----LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~D----lV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+.+..++.++| .|+ |. .|. ...+..+.+.|++||.+++.
T Consensus 229 ~~~~t~~~g~d~~~d~v~-d~----~g~------------~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 229 IKAFAKARGLRSTGWKIF-EC----SGS------------KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred HHhhcccCCCCCCcCEEE-EC----CCC------------hHHHHHHHHHHhcCCeEEEE
Confidence 33333445665 444 22 111 12455678899999999874
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.60 E-value=2 Score=30.30 Aligned_cols=92 Identities=24% Similarity=0.224 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhcCCCcccEEE
Q 029488 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124 (192)
Q Consensus 50 ~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~ 124 (192)
||.|.++..+++.+. ..+ .|+.+|.++.. ...++.++.||.++.+...+. .-..++.|+
T Consensus 4 ~G~g~~~~~i~~~L~------------~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a----~i~~a~~vv 67 (116)
T PF02254_consen 4 IGYGRIGREIAEQLK------------EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERA----GIEKADAVV 67 (116)
T ss_dssp ES-SHHHHHHHHHHH------------HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT----TGGCESEEE
T ss_pred EcCCHHHHHHHHHHH------------hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhc----CccccCEEE
Confidence 677889988888775 344 89999999742 124688899999998765432 235788888
Q ss_pred eCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCC
Q 029488 125 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 171 (192)
Q Consensus 125 ~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~ 171 (192)
+... +...+ ..+....+-+-|...+++.+.+..
T Consensus 68 ~~~~---------~d~~n-----~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 68 ILTD---------DDEEN-----LLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp EESS---------SHHHH-----HHHHHHHHHHTTTSEEEEEESSHH
T ss_pred EccC---------CHHHH-----HHHHHHHHHHCCCCeEEEEECCHH
Confidence 7532 11111 122334466778889888776533
No 309
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.40 E-value=9 Score=30.99 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=52.9
Q ss_pred CCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.|+.+|=.|+++ +++...+++++-. ...+|+.++.+... ....+.++..|+++.+...+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----------LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 478999999998 4888888777531 25678877776421 12334567899999877666
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -+.+|+++.+..
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCc
Confidence 655432 147999999864
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=87.35 E-value=0.71 Score=38.64 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=30.2
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++|+.|||-.||+|+-+.++.+.. -+.+|+|+++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lg---------------R~~IG~Ei~~~ 241 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASG---------------RKFIGIEINSE 241 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcC---------------CCEEEEeCCHH
Confidence 689999999999999888777664 59999999984
No 311
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=86.55 E-value=3.1 Score=33.31 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=34.6
Q ss_pred EEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCC
Q 029488 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITN 104 (192)
Q Consensus 45 vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~ 104 (192)
|.|+||-=|-...+|.++. ....++|+|+++-. . ..+++...+|=.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~-------------~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-------------KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-------------SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhcC-------------CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence 6899999999999999996 46789999999721 1 2356667777543
No 312
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.42 E-value=6.1 Score=31.38 Aligned_cols=114 Identities=11% Similarity=-0.020 Sum_probs=62.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~~ 109 (192)
+++++|=.|+ +|+....+++..-. ...+|++++.+.... -.++.++.+|+++.+...
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAG-----------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVA 72 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 3678888885 56677777665431 356788887654210 124667889999987665
Q ss_pred HHHhhcC--CCcccEEEeCCCCCCCCCccccHHH--HHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 110 VVIRHFD--GCKADLVVCDGAPDVTGLHDMDEFV--QSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 110 ~~~~~~~--~~~~DlV~~d~~~~~~g~~~~~~~~--~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+.+... -..+|.|+.+..........++... +..-...+++.+...++.+|.++..
T Consensus 73 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 73 ALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 5544321 1368998877532211111111100 0111123455566666677887763
No 313
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.18 E-value=1.5 Score=37.57 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=46.4
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhhc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
..+++||.||-||++.-+.+.. -.-+.++|++|.+ ..+...++..|+..... +.+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--------------f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~-----~~~ 63 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--------------FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDG-----EAL 63 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--------------CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcCh-----hhc
Confidence 3589999999999997776553 2578899999853 12223456677765432 112
Q ss_pred CCCcccEEEeCCCC
Q 029488 116 DGCKADLVVCDGAP 129 (192)
Q Consensus 116 ~~~~~DlV~~d~~~ 129 (192)
+...+|+++.-++|
T Consensus 64 ~~~~~DvligGpPC 77 (328)
T COG0270 64 RKSDVDVLIGGPPC 77 (328)
T ss_pred cccCCCEEEeCCCC
Confidence 22278999988764
No 314
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.71 E-value=1.2 Score=32.19 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 029488 147 LAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 147 ~~~l~~a~~~LkpgG~~v~k~ 167 (192)
...++.+...|+|||.|++.-
T Consensus 24 ~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHhhCCCCEEEEeC
Confidence 467899999999999999953
No 315
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=85.65 E-value=13 Score=28.73 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCceEEecccCCchhHHHHHhhcCCCc
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-~~~~v~~~~~Di~~~~~~~~~~~~~~~~~ 119 (192)
++.+|+=|||=+--. .+..... +..+++-.|.+.-- ...+-.|..-|...+. .+++.+ .++
T Consensus 25 ~~~~iaclstPsl~~--~l~~~~~------------~~~~~~Lle~D~RF~~~~~~~F~fyD~~~p~---~~~~~l-~~~ 86 (162)
T PF10237_consen 25 DDTRIACLSTPSLYE--ALKKESK------------PRIQSFLLEYDRRFEQFGGDEFVFYDYNEPE---ELPEEL-KGK 86 (162)
T ss_pred CCCEEEEEeCcHHHH--HHHhhcC------------CCccEEEEeecchHHhcCCcceEECCCCChh---hhhhhc-CCC
Confidence 467888887644332 2322111 45677778877521 1121146666666653 355556 469
Q ss_pred ccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 120 ~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+|+|++|+++- +.........++..++|+++.+++
T Consensus 87 ~d~vv~DPPFl-----------~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 87 FDVVVIDPPFL-----------SEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred ceEEEECCCCC-----------CHHHHHHHHHHHHHHhCccceEEE
Confidence 99999999861 111112344566677788888876
No 316
>PRK05993 short chain dehydrogenase; Provisional
Probab=85.56 E-value=15 Score=29.97 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhc-
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF- 115 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~- 115 (192)
.++++|=.|+ +|+.+..+++.+.. .+.+|++++.++... ..++..+..|+++.+....+.+..
T Consensus 3 ~~k~vlItGa-sggiG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGC-SSGIGAYCARALQS-----------DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHH
Confidence 3567887776 68888887776531 357899998876321 135778899999987655554432
Q ss_pred --CCCcccEEEeCCC
Q 029488 116 --DGCKADLVVCDGA 128 (192)
Q Consensus 116 --~~~~~DlV~~d~~ 128 (192)
..+.+|+++.+..
T Consensus 71 ~~~~g~id~li~~Ag 85 (277)
T PRK05993 71 ELSGGRLDALFNNGA 85 (277)
T ss_pred HHcCCCccEEEECCC
Confidence 1247899999864
No 317
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.97 E-value=1 Score=38.39 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=42.9
Q ss_pred EEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhhcCCC
Q 029488 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (192)
Q Consensus 45 vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~~~~~ 118 (192)
|+||.||-||++.-+.+.. -..+.++|+++.+ ..++ ..+.+|+.+.... .++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--------------~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~-----~~~-- 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--------------FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPS-----DIP-- 58 (315)
T ss_pred CEEEecCccHHHHHHHHcC--------------CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhh-----hCC--
Confidence 6899999999998886542 2356789998742 1233 4567888775321 232
Q ss_pred cccEEEeCCCC
Q 029488 119 KADLVVCDGAP 129 (192)
Q Consensus 119 ~~DlV~~d~~~ 129 (192)
.+|+++..+++
T Consensus 59 ~~dvl~gg~PC 69 (315)
T TIGR00675 59 DFDILLGGFPC 69 (315)
T ss_pred CcCEEEecCCC
Confidence 58999988754
No 318
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=84.67 E-value=18 Score=28.50 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=57.7
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEeccc--CCc--hhHHHHHhhcCCCc
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDI--TNA--RTAEVVIRHFDGCK 119 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di--~~~--~~~~~~~~~~~~~~ 119 (192)
||+=-| |.|.......+...- .+.-|..+|+++....+--..+.+|- +.. ....++-+.+.+++
T Consensus 5 rVivYG-GkGALGSacv~~Fka-----------nnywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gek 72 (236)
T KOG4022|consen 5 RVIVYG-GKGALGSACVEFFKA-----------NNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEK 72 (236)
T ss_pred eEEEEc-CcchHhHHHHHHHHh-----------cCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccc
Confidence 444333 677777665555431 25789999999754322111222322 111 11223334577889
Q ss_pred ccEEEeCCCCCCCCCcc-ccHHHHHH-------HH-HHHHHHHHHhcccCCEEEE
Q 029488 120 ADLVVCDGAPDVTGLHD-MDEFVQSQ-------LI-LAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 120 ~DlV~~d~~~~~~g~~~-~~~~~~~~-------l~-~~~l~~a~~~LkpgG~~v~ 165 (192)
+|.|+|-..-...|... -+-+.+.. +. ...-..|...|||||.+-+
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~L 127 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQL 127 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeee
Confidence 99999985433222211 11111111 11 1234567789999999866
No 319
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=84.63 E-value=11 Score=34.25 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=59.8
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------CCCc-----eEEecccCCch
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGV-----IQVQGDITNAR 106 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~~~v-----~~~~~Di~~~~ 106 (192)
.|+..+.|.+||+|++.......... ......++|-+..+... +.++ ....+|.....
T Consensus 216 dp~~~~~Dp~~Gsg~~L~~~~~~~~~---------~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~ 286 (501)
T TIGR00497 216 DTVDDVYDMACGSGSLLLQVIKVLGE---------KTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK 286 (501)
T ss_pred CCCCcccccccchHHHHHHHHHHhcc---------cccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc
Confidence 36789999999999998654433210 00246788888887310 1111 11122222110
Q ss_pred hHHHHHhhcCCCcccEEEeCCCCCCCCCcc-------cc-----HHHH--HHHHHHHHHHHHHhcccCCEEEE
Q 029488 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHD-------MD-----EFVQ--SQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 107 ~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~-------~~-----~~~~--~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+....+||.|++|+++....... -+ +... ..--...+..+...|++||...+
T Consensus 287 ------d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 287 ------EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred ------cccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 112345799999998754321100 00 0000 01123567788899999998654
No 320
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.47 E-value=16 Score=31.27 Aligned_cols=105 Identities=18% Similarity=0.045 Sum_probs=61.2
Q ss_pred HHhHcCcccCCCeEEeEcCC--CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCc
Q 029488 32 IDEEFNIFEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNA 105 (192)
Q Consensus 32 i~~~~~~l~~g~~vLDlG~G--pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~ 105 (192)
....+.-+++|++||=.|++ -|.++..|++..+ ..++++-.++... --+... .-|..+.
T Consensus 133 ~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--------------~~~v~~~~s~~k~~~~~~lGAd~-vi~y~~~ 197 (326)
T COG0604 133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--------------ATVVAVVSSSEKLELLKELGADH-VINYREE 197 (326)
T ss_pred HHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--------------CcEEEEecCHHHHHHHHhcCCCE-EEcCCcc
Confidence 33334456889999988843 3455556666653 3666666554211 012211 1123333
Q ss_pred hhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+..+.+.+...+..+|+|+.-. | ...+..+...|+++|.++..-..
T Consensus 198 ~~~~~v~~~t~g~gvDvv~D~v-----G-------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 198 DFVEQVRELTGGKGVDVVLDTV-----G-------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred cHHHHHHHHcCCCCceEEEECC-----C-------------HHHHHHHHHHhccCCEEEEEecC
Confidence 3455555666666899999642 1 13456678999999999885543
No 321
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.24 E-value=1.3 Score=37.18 Aligned_cols=38 Identities=16% Similarity=-0.047 Sum_probs=31.0
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
....|++|||||||+|--...+.... ...+...|.+.+
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~--------------~~~~~fqD~na~ 150 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKG--------------AVSVHFQDFNAE 150 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhc--------------cceeeeEecchh
Confidence 33579999999999999999888773 478888888864
No 322
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.04 E-value=9.2 Score=31.99 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=50.5
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~ 111 (192)
++++.+||-.|+ |+.+.. +++..+ ...|++++.++... . .++..+ -+..+......+
T Consensus 165 ~~~~~~VlI~g~--g~vg~~~iqlak~~g-------------~~~v~~~~~~~~~~~~~~~~g~~~v-i~~~~~~~~~~i 228 (347)
T cd05278 165 IKPGSTVAVIGA--GPVGLCAVAGARLLG-------------AARIIAVDSNPERLDLAKEAGATDI-INPKNGDIVEQI 228 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHhCCcEE-EcCCcchHHHHH
Confidence 467889999764 555444 444432 23788887664211 0 122111 112222233334
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
....+++.+|+++.... + ...+..+.+.|+++|+++.
T Consensus 229 ~~~~~~~~~d~vld~~g----~-------------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 229 LELTGGRGVDCVIEAVG----F-------------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred HHHcCCCCCcEEEEccC----C-------------HHHHHHHHHHhhcCCEEEE
Confidence 44445568999985321 0 0245567789999999875
No 323
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.90 E-value=18 Score=30.79 Aligned_cols=94 Identities=14% Similarity=0.005 Sum_probs=53.3
Q ss_pred ccCCCeEEeEcCC--CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCC-chhHHH
Q 029488 39 FEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITN-ARTAEV 110 (192)
Q Consensus 39 l~~g~~vLDlG~G--pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~-~~~~~~ 110 (192)
+++|++||=.|++ -|..+..+++.. ..+|++++.++... --++..+. |..+ ......
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--------------G~~Vi~~~~~~~k~~~~~~~lGa~~vi-~~~~~~~~~~~ 220 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--------------GCYVVGSAGSSQKVDLLKNKLGFDEAF-NYKEEPDLDAA 220 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--------------CCEEEEEcCCHHHHHHHHHhcCCCEEE-ECCCcccHHHH
Confidence 5789999988872 444555566654 36799988775210 12332211 1111 122223
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+.+..+ +.+|+|+-.. | ...+..+.+.|++||++++.
T Consensus 221 i~~~~~-~gvD~v~d~v-----G-------------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 221 LKRYFP-EGIDIYFDNV-----G-------------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHHCC-CCcEEEEECC-----C-------------HHHHHHHHHHhccCCEEEEE
Confidence 333333 5799998421 2 02345678899999999864
No 324
>PRK06179 short chain dehydrogenase; Provisional
Probab=82.59 E-value=24 Score=28.43 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCceEEecccCCchhHHHHHhhc--CC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHF--DG 117 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--~~~~v~~~~~Di~~~~~~~~~~~~~--~~ 117 (192)
++++|=.| |+|+.+..+++.+.. .+.+|++++.++.. ...++.++.+|+++.+....+.+.. ..
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLAR-----------AGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHH-----------CCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 45777778 568888887776531 35789999887532 2357888999999987665554432 12
Q ss_pred CcccEEEeCCCC
Q 029488 118 CKADLVVCDGAP 129 (192)
Q Consensus 118 ~~~DlV~~d~~~ 129 (192)
+.+|.++.+...
T Consensus 72 g~~d~li~~ag~ 83 (270)
T PRK06179 72 GRIDVLVNNAGV 83 (270)
T ss_pred CCCCEEEECCCC
Confidence 468999988754
No 325
>PRK13699 putative methylase; Provisional
Probab=82.46 E-value=1.7 Score=35.26 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=29.7
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++|+.|||--||+|+.+..+.+.. -..+|+|+++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---------------r~~~g~e~~~~ 196 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---------------RRYIGIELLEQ 196 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---------------CCEEEEecCHH
Confidence 589999999999999888777653 58999999974
No 326
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.60 E-value=19 Score=28.21 Aligned_cols=76 Identities=7% Similarity=0.048 Sum_probs=50.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~---~~v~~~~~Di~~~~~~~~~ 111 (192)
+++++|=.| |+|+.+..+++..-. .+.+|++++.++.. .+ .++.++.+|+.+.......
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLA-----------EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH-----------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHH
Confidence 367888888 478888777776531 35689999877631 01 3567788999987665544
Q ss_pred HhhcC--CCcccEEEeCCC
Q 029488 112 IRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 112 ~~~~~--~~~~DlV~~d~~ 128 (192)
.+... ...+|.|+....
T Consensus 73 ~~~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 73 VDAIVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 43221 137899987754
No 327
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.38 E-value=5.1 Score=36.20 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---CCCceEEecccCCchhH----
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---IEGVIQVQGDITNARTA---- 108 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~---~~~v~~~~~Di~~~~~~---- 108 (192)
..+++||.||-||++.-+-+. + -..|.++|+++.+ . .+....+.+||++....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-------------~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~ 153 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-------------GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEG 153 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-------------CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccc
Confidence 469999999999999998654 2 2467899999743 1 13344556788765321
Q ss_pred ---HHHHhhcC--CCcccEEEeCCCC
Q 029488 109 ---EVVIRHFD--GCKADLVVCDGAP 129 (192)
Q Consensus 109 ---~~~~~~~~--~~~~DlV~~d~~~ 129 (192)
.++...+. -..+|+++.-++|
T Consensus 154 ~~~~~~~~~~~~~~p~~DvL~gGpPC 179 (467)
T PRK10458 154 VSDEEAAEHIRQHIPDHDVLLAGFPC 179 (467)
T ss_pred cchhhhhhhhhccCCCCCEEEEcCCC
Confidence 01111110 1258988887654
No 328
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=81.14 E-value=2.1 Score=39.25 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=64.6
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhHHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~~~~ 111 (192)
..+.=+|+|.|-......+... ......++++|+-+|.+. ..+|+.+..|.+.+..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~---------~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a---- 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAE---------ETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA---- 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHH---------HhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC----
Confidence 3678899999999866554421 011367899999998532 1368888999988642
Q ss_pred HhhcCCCcccEEEeCC--CCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDG--APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~--~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
|..+.|+++|-. ++ |-. .|..+.|.-|.+.|||+|..+=.
T Consensus 436 ----p~eq~DI~VSELLGSF---GDN--------ELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 436 ----PREQADIIVSELLGSF---GDN--------ELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ----chhhccchHHHhhccc---cCc--------cCCHHHHHHHHhhcCCCceEccc
Confidence 225889988863 22 111 12235677889999999987643
No 329
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.86 E-value=17 Score=31.41 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=56.6
Q ss_pred ccCCCeEEeEcCC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CC--CCceEEecccCCchhHHHHH
Q 029488 39 FEGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI--EGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~G-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---~~--~~v~~~~~Di~~~~~~~~~~ 112 (192)
+.||+++-=.|.| =|.++..++..++ .+|+++|-+... .+ -++.....-..+++...++.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG--------------~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG--------------MRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIM 244 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC--------------cEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHH
Confidence 3588888777764 6888888888864 899999998621 11 13322222222444444444
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++ ...|-|.+- + ...+..+.+.||++|++|+.
T Consensus 245 ~~~d-g~~~~v~~~-a------------------~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 245 KTTD-GGIDTVSNL-A------------------EHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Hhhc-Ccceeeeec-c------------------ccchHHHHHHhhcCCEEEEE
Confidence 4332 355555521 1 12355678999999999874
No 330
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.46 E-value=34 Score=28.80 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=46.6
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCceEEecccCCchhHHHHHh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++||=.|+ +|..+..+++.+-.+ +...+|++++.++.. ...++.++.+|+++.+....+.
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~---------g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~- 72 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLEN---------YNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL- 72 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHh---------CCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHH-
Confidence 678887775 688888777765300 012578888765431 1135778899999976654432
Q ss_pred hcCCCcccEEEeCCC
Q 029488 114 HFDGCKADLVVCDGA 128 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~ 128 (192)
..+|.|+....
T Consensus 73 ----~~iD~Vih~Ag 83 (324)
T TIGR03589 73 ----RGVDYVVHAAA 83 (324)
T ss_pred ----hcCCEEEECcc
Confidence 24899988764
No 331
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=80.28 E-value=30 Score=29.24 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=59.8
Q ss_pred HhCchhhHHhhHH--HH--HhHc---CcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC
Q 029488 18 EEGWRARSAFKLL--QI--DEEF---NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (192)
Q Consensus 18 ~~~~~~r~~~kl~--~i--~~~~---~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~ 90 (192)
...+..++..||. || ..++ ..+. |..||=+|+|||....+|.+.... -+..-+.+-+|..+..
T Consensus 31 ~~~f~h~GQrKLLLsEI~FLs~~~~~~~l~-g~~VVYiGSApG~HI~~L~~lf~~---------lg~~ikw~LiDp~~h~ 100 (300)
T PHA03108 31 PKKFPYQGQLKLLLGELFFLSKLQRHGILD-GSTIVYIGSAPGTHIRYLRDHFYS---------LGVVIKWMLIDGRKHD 100 (300)
T ss_pred cccCCChhHHHHHHHHHHHHHHHHhcccCC-CceEEEecCCCCccHHHHHHHHHh---------cCCCeEEEEECCCccc
Confidence 3446667777764 33 2222 2223 779999999999999999998741 0123578899988753
Q ss_pred ----CCCCceEEecccCCchhHHHHHhhcCCCcccEE-EeCC
Q 029488 91 ----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLV-VCDG 127 (192)
Q Consensus 91 ----~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV-~~d~ 127 (192)
.+++++.++ +..+.+....+...+ ..-|++ +||-
T Consensus 101 ~~Le~l~nV~Li~-~f~de~~i~~~r~~~--~~~~illISDI 139 (300)
T PHA03108 101 PILNGLRDVTLVT-RFVDEAYLRRLKKQL--HPSKIILISDI 139 (300)
T ss_pred HhhcCCCcEEeeH-hhcCHHHHHHHHHhc--cCCCEEEEEee
Confidence 345665444 355655544444433 244666 6665
No 332
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.15 E-value=23 Score=29.53 Aligned_cols=95 Identities=15% Similarity=-0.002 Sum_probs=50.7
Q ss_pred ccCCCeEEeEcCC--CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHH
Q 029488 39 FEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~G--pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~ 112 (192)
+++|.+||=.|++ -|..+..+++.. ..+|++++.++... -.++..+. |..+.....+..
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--------------G~~Vi~~~~s~~~~~~~~~lGa~~vi-~~~~~~~~~~~~ 200 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK--------------GCKVVGAAGSDEKVAYLKKLGFDVAF-NYKTVKSLEETL 200 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHcCCCEEE-eccccccHHHHH
Confidence 5789999888752 344444455544 36899888775310 01221111 111111111122
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
....++.+|+|+--. |. ..+..+.+.|++||++++.
T Consensus 201 ~~~~~~gvdvv~d~~-----G~-------------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 201 KKASPDGYDCYFDNV-----GG-------------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HHhCCCCeEEEEECC-----CH-------------HHHHHHHHHhCcCcEEEEe
Confidence 223345799998421 10 1245678899999999863
No 333
>PRK06196 oxidoreductase; Provisional
Probab=79.83 E-value=27 Score=29.15 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHHhh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
.++++|=.|+ +|+.+..+++.+.. .+.+|+.++.++.. .+.++.++.+|+++.+....+.+.
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~-----------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQ-----------AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHH
Confidence 4678888884 57788777776531 35689998877531 123577889999998776655544
Q ss_pred cC--CCcccEEEeCCC
Q 029488 115 FD--GCKADLVVCDGA 128 (192)
Q Consensus 115 ~~--~~~~DlV~~d~~ 128 (192)
.. ...+|.++.+..
T Consensus 93 ~~~~~~~iD~li~nAg 108 (315)
T PRK06196 93 FLDSGRRIDILINNAG 108 (315)
T ss_pred HHhcCCCCCEEEECCC
Confidence 32 247999999874
No 334
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=79.49 E-value=13 Score=31.03 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=52.4
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~ 111 (192)
+++|.+||-.|+ |+.+.. +++.. ..+|+++..++... . .+...+ -|..+......+
T Consensus 157 l~~g~~vLI~g~--g~vG~~a~~lA~~~--------------g~~v~~~~~s~~~~~~~~~~g~~~v-~~~~~~~~~~~l 219 (337)
T cd08261 157 VTAGDTVLVVGA--GPIGLGVIQVAKAR--------------GARVIVVDIDDERLEFARELGADDT-INVGDEDVAARL 219 (337)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc--------------CCeEEEECCCHHHHHHHHHhCCCEE-ecCcccCHHHHH
Confidence 578899999975 454444 44443 47788886554210 0 111111 122222333444
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+..++..+|+++.... . ...+..+.+.|+++|.++..
T Consensus 220 ~~~~~~~~vd~vld~~g-----~------------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 220 RELTDGEGADVVIDATG-----N------------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HHHhCCCCCCEEEECCC-----C------------HHHHHHHHHHHhcCCEEEEE
Confidence 44555567999986421 0 12345677899999998853
No 335
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=79.43 E-value=18 Score=31.63 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=52.6
Q ss_pred ccCCCeEEeEc-CCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CC-C------CceEEecccCC
Q 029488 39 FEGVKRVVDLC-AAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI-E------GVIQVQGDITN 104 (192)
Q Consensus 39 l~~g~~vLDlG-~GpG~-~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----~~-~------~v~~~~~Di~~ 104 (192)
+++|.+|+=+| +|+=| .+..+++..+. ...+|+++|.++.. .. . ++....-|..+
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~-----------g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~ 241 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPI-----------GPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT 241 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhccc-----------CCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCc
Confidence 46788888886 34333 22334444320 12479999988631 11 0 33211122221
Q ss_pred -chhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 105 -ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 105 -~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
......+.+..++..+|.|+... |. ...+..+.+.++++|.+++.
T Consensus 242 ~~~~~~~v~~~t~g~g~D~vid~~-----g~------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 242 IDDLHATLMELTGGQGFDDVFVFV-----PV------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred cccHHHHHHHHhCCCCCCEEEEcC-----CC------------HHHHHHHHHHhccCCeEEEE
Confidence 22233344444556799888532 10 13456788999999987764
No 336
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.19 E-value=32 Score=27.74 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=69.4
Q ss_pred CCCeEEeEcCC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--CC------CC-CCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--MA------PI-EGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~G-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~--~~------~~-~~v~~~~~Di~~~~~~~~ 110 (192)
.++++|=.|+| ++++...+++.+.. ...+|+.++.+. .. .. .++.++..|+++.+....
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE-----------QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH-----------CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 36789999996 68888887776531 357888887653 10 11 246678899999877666
Q ss_pred HHhhcC--CCcccEEEeCCCCCCC-------CCccccHHH---HHHH--HHHHHHHHHHhcccCCEEEEEec
Q 029488 111 VIRHFD--GCKADLVVCDGAPDVT-------GLHDMDEFV---QSQL--ILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~~~~~-------g~~~~~~~~---~~~l--~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+.+... ...+|.++.+...... .....+++. ...+ ...+.+.+...++++|.++...+
T Consensus 75 ~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 75 LADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred HHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 554421 2479999998643211 011122221 1111 12234556677788898776443
No 337
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=79.11 E-value=8.3 Score=34.88 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CC--CCceEEecc-----cCC-chhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PI--EGVIQVQGD-----ITN-ARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-~~--~~v~~~~~D-----i~~-~~~~~~~ 111 (192)
.+.++|=+|-|.|++..++.... |...++||++.|.. .. ..+.+.+.| +.+ .....+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-------------p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~ 361 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-------------PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRT 361 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-------------CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHH
Confidence 35688888888999999998877 47899999999842 11 122222222 111 0111111
Q ss_pred Hhh-cCCCcccEEEeCCC-CCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec-CCC-ChHHHHHHHHccCCee
Q 029488 112 IRH-FDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGK-DTSLLYCQVNKMLVKT 187 (192)
Q Consensus 112 ~~~-~~~~~~DlV~~d~~-~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~-~~~-~~~~l~~~l~~~f~~v 187 (192)
.+. -.+..+|+++-|.. ++..|...+. +.-+...+|..+...|.|.|-|++-.. +.. -..++...+++.|..+
T Consensus 362 ~k~~~~~~~~dvl~~dvds~d~~g~~~pp---~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l 438 (482)
T KOG2352|consen 362 AKSQQEDICPDVLMVDVDSKDSHGMQCPP---PAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQL 438 (482)
T ss_pred hhccccccCCcEEEEECCCCCcccCcCCc---hHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHH
Confidence 121 13457999999862 2322322221 222345678889999999999987643 322 3456677777777643
No 338
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=78.35 E-value=10 Score=35.55 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=61.5
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCC-CCCCCCCCCCCCCCeEEEEeCCCCC---------------------------CCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYL-PAKLSPDSREGDLPLIVAIDLQPMA---------------------------PIE 93 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~-~~~~~~~~~~~~~~~V~gvD~~~~~---------------------------~~~ 93 (192)
.-+|+|+|=|+|--...+.+.... +.+.++.. ...-+++++|..|+. ..+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~--~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPAR--LKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCC--CceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 469999999999866555544310 00000000 013589999986631 011
Q ss_pred Cc------------eEEecccCCchhHHHHHhhcCCCcccEEEeCC-CCCCCCCccccHHHHHHHHHHHHHHHHHhcccC
Q 029488 94 GV------------IQVQGDITNARTAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG 160 (192)
Q Consensus 94 ~v------------~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg 160 (192)
+. +...||+.+. +. .+. ..+|.+..|+ +|. .|++ .+....+..+.+.++||
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~-----~~-~~~-~~~d~~~lD~FsP~----~np~-----~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANEL-----LP-QLD-ARADAWFLDGFAPA----KNPD-----MWSPNLFNALARLARPG 199 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHH-----HH-hcc-ccccEEEeCCCCCc----cChh-----hccHHHHHHHHHHhCCC
Confidence 21 2234555431 22 222 4699999997 332 1222 12346788899999999
Q ss_pred CEEEEEe
Q 029488 161 GKFIAKI 167 (192)
Q Consensus 161 G~~v~k~ 167 (192)
|+|+..+
T Consensus 200 ~~~~t~t 206 (662)
T PRK01747 200 ATLATFT 206 (662)
T ss_pred CEEEEee
Confidence 9998754
No 339
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.33 E-value=33 Score=27.50 Aligned_cols=77 Identities=16% Similarity=0.027 Sum_probs=52.6
Q ss_pred CCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C--CCCCceEEecccCCchhHHHHH
Q 029488 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A--PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 41 ~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----~--~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
.++.+|=.|++. ++....+++.+.. ...+|+.++.+.. . ...++.+++.|+++.+....+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-----------QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 377899999886 7888888877641 3578888776521 0 1124667889999987766655
Q ss_pred hhcC--CCcccEEEeCCC
Q 029488 113 RHFD--GCKADLVVCDGA 128 (192)
Q Consensus 113 ~~~~--~~~~DlV~~d~~ 128 (192)
+... -+.+|+++.+..
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 4431 147999998864
No 340
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.18 E-value=31 Score=27.13 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=51.0
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----------CCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----------~~~v~~~~~Di~~~~~~~~ 110 (192)
.++++|=.|+ +|+++..+++.+.. ...+|+.++.++... ..++.++.+|+++.+....
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK-----------AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHH
Confidence 4567888884 78888888877631 356899999875310 1357778999999876555
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -...|.|+.+..
T Consensus 73 ~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 444321 136899988764
No 341
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=77.95 E-value=5.2 Score=35.63 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=45.9
Q ss_pred ccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC--eeeEE
Q 029488 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV--KTPVY 190 (192)
Q Consensus 120 ~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~--~v~~~ 190 (192)
.|++++.......-..+.+. .-......+.+.+.+||.+++-+|.....++++..++.+.. .++|+
T Consensus 181 ~DvLI~EsTYg~~~~~~r~~-----~e~~f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~~~pi~ 248 (427)
T COG1236 181 IDVLIVESTYGDRLHPNRDE-----VERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAGDYPIY 248 (427)
T ss_pred CcEEEEecccCCccCCCHHH-----HHHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccCCCCeE
Confidence 69999886532211111111 11236677889999999999999999999999999988754 45554
No 342
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.85 E-value=31 Score=28.87 Aligned_cols=94 Identities=15% Similarity=0.017 Sum_probs=51.3
Q ss_pred cccCCCeEEeEcCCCChHH---HHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C---CCceEEecccCC-chhH
Q 029488 38 IFEGVKRVVDLCAAPGSWS---QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I---EGVIQVQGDITN-ARTA 108 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s---~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~---~~v~~~~~Di~~-~~~~ 108 (192)
-+++|++||=.|+ +|+.. ..+++.. ..+|++++.++... . -++..+ -|..+ ....
T Consensus 148 ~~~~g~~VlI~Ga-~G~vG~~aiqlAk~~--------------G~~Vi~~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~ 211 (338)
T cd08295 148 KPKKGETVFVSAA-SGAVGQLVGQLAKLK--------------GCYVVGSAGSDEKVDLLKNKLGFDDA-FNYKEEPDLD 211 (338)
T ss_pred CCCCCCEEEEecC-ccHHHHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHhcCCcee-EEcCCcccHH
Confidence 3578999997775 34444 4444444 46788887665210 0 122111 11111 1222
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..+.+... .++|+|+--. | ...+..+.+.|+++|.++..
T Consensus 212 ~~i~~~~~-~gvd~v~d~~-----g-------------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 212 AALKRYFP-NGIDIYFDNV-----G-------------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred HHHHHhCC-CCcEEEEECC-----C-------------HHHHHHHHHHhccCcEEEEe
Confidence 23333333 5799998421 1 02345678999999999863
No 343
>PRK07578 short chain dehydrogenase; Provisional
Probab=77.81 E-value=29 Score=26.55 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=60.0
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEE
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV 123 (192)
++|=.|+ +|+....+++.+.. . .+|++++.++. .+..|+++.+....+.+.+ .++|.+
T Consensus 2 ~vlItGa-s~giG~~la~~l~~-----------~-~~vi~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~id~l 59 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSK-----------R-HEVITAGRSSG-------DVQVDITDPASIRALFEKV--GKVDAV 59 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHh-----------c-CcEEEEecCCC-------ceEecCCChHHHHHHHHhc--CCCCEE
Confidence 5667774 67888888877640 2 67888876532 4677999887766665554 378999
Q ss_pred EeCCCCCCCC-Ccc--ccHHH---HHHH--HHHHHHHHHHhcccCCEEEEEe
Q 029488 124 VCDGAPDVTG-LHD--MDEFV---QSQL--ILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 124 ~~d~~~~~~g-~~~--~~~~~---~~~l--~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+.+......+ ..+ .+.+. ...+ ...+.+.+.+.++++|.+++..
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 9886432111 111 11111 1111 1234555667777889887643
No 344
>PRK06398 aldose dehydrogenase; Validated
Probab=77.54 E-value=35 Score=27.40 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=50.2
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcC--CCc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~--~~~ 119 (192)
|+++|=.|+ +|++...+++.+.. .+.+|+.++.++... .++.++..|+++.+....+.+... -..
T Consensus 6 gk~vlItGa-s~gIG~~ia~~l~~-----------~G~~Vi~~~r~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 6 DKVAIVTGG-SQGIGKAVVNRLKE-----------EGSNVINFDIKEPSY-NDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCeEEEEeCCcccc-CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 678888885 56777666666531 357899988775332 357788999999876555544321 136
Q ss_pred ccEEEeCCC
Q 029488 120 ADLVVCDGA 128 (192)
Q Consensus 120 ~DlV~~d~~ 128 (192)
+|.++.+..
T Consensus 73 id~li~~Ag 81 (258)
T PRK06398 73 IDILVNNAG 81 (258)
T ss_pred CCEEEECCC
Confidence 899998864
No 345
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.17 E-value=11 Score=33.24 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=50.0
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCceEEecccCCchhHHHHHhhc
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------~~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
++||=||| |+.++.+++.+..+ ...+|+..|.++.. ...+++..+.|+.+.+...++ +
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~----------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l---i 66 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN----------GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL---I 66 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH---H
Confidence 57899999 88888877775421 23799999999642 234788999999997654443 3
Q ss_pred CCCcccEEEeCCCC
Q 029488 116 DGCKADLVVCDGAP 129 (192)
Q Consensus 116 ~~~~~DlV~~d~~~ 129 (192)
. .+|+|++-.++
T Consensus 67 ~--~~d~VIn~~p~ 78 (389)
T COG1748 67 K--DFDLVINAAPP 78 (389)
T ss_pred h--cCCEEEEeCCc
Confidence 2 44999987654
No 346
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=76.83 E-value=45 Score=28.19 Aligned_cols=73 Identities=22% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------CCCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---------~~~v~~~~~Di~~~~~~~~~ 111 (192)
++++||=.| |+|..+..+++.+-. ...+|++++.++... ..++.++.+|+++.+....+
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLE-----------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKA 70 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHH-----------CCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHH
Confidence 367888777 667777777776531 346899998765321 12466788999987654443
Q ss_pred HhhcCCCcccEEEeCCC
Q 029488 112 IRHFDGCKADLVVCDGA 128 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~ 128 (192)
.+ ...+|.|+....
T Consensus 71 ~~---~~~~d~vih~A~ 84 (349)
T TIGR02622 71 IA---EFKPEIVFHLAA 84 (349)
T ss_pred Hh---hcCCCEEEECCc
Confidence 33 335798887654
No 347
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=76.78 E-value=42 Score=27.87 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~-~~~v~~~~~Di~~~~~~ 108 (192)
.+++||=.| |+|..+..+++++-. .+.+|+++..++.. . ..++.++.+|+++.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-----------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHH
Confidence 477888888 678888887776531 34678777655421 0 13577889999997654
Q ss_pred HHHHhhcCCCcccEEEeCCCC
Q 029488 109 EVVIRHFDGCKADLVVCDGAP 129 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~ 129 (192)
.++. . .+|.|+...+.
T Consensus 72 ~~~~---~--~~d~vih~A~~ 87 (325)
T PLN02989 72 ELAI---D--GCETVFHTASP 87 (325)
T ss_pred HHHH---c--CCCEEEEeCCC
Confidence 4432 2 57988887653
No 348
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.63 E-value=16 Score=30.92 Aligned_cols=91 Identities=18% Similarity=0.067 Sum_probs=48.6
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC---CCC----CCCCceEEecccCCchhHHHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ---PMA----PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~---~~~----~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
++|.+||=.|+ |+.+..+.+.... ...+|++++.+ +.. .--++..+ |..+.+.. +.
T Consensus 171 ~~g~~vlI~G~--G~vG~~a~q~ak~-----------~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~-~~- 233 (355)
T cd08230 171 WNPRRALVLGA--GPIGLLAALLLRL-----------RGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVA-EV- 233 (355)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-----------cCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchh-hh-
Confidence 57889998887 4554443333211 13589999873 211 01134332 22221111 11
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
. ....+|+|+--. |. ...+..+.+.|++||.+++.
T Consensus 234 ~--~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 234 K--LVGEFDLIIEAT-----GV------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred h--hcCCCCEEEECc-----CC------------HHHHHHHHHHccCCcEEEEE
Confidence 1 124789888532 21 12456678999999998764
No 349
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=76.42 E-value=14 Score=29.51 Aligned_cols=85 Identities=7% Similarity=0.060 Sum_probs=50.4
Q ss_pred CCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHH--HHHHHHHHHH
Q 029488 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQL--ILAGLTVVTH 155 (192)
Q Consensus 78 ~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l--~~~~l~~a~~ 155 (192)
+.+|+.+|.++... ....++..|+++.+...++.+... +.+|.++++..... ....+......+ ...+++.+..
T Consensus 9 G~~Vv~~~r~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~~--~~~~~~~~~vN~~~~~~l~~~~~~ 84 (241)
T PRK12428 9 GARVIGVDRREPGM-TLDGFIQADLGDPASIDAAVAALP-GRIDALFNIAGVPG--TAPVELVARVNFLGLRHLTEALLP 84 (241)
T ss_pred CCEEEEEeCCcchh-hhhHhhcccCCCHHHHHHHHHHhc-CCCeEEEECCCCCC--CCCHHHhhhhchHHHHHHHHHHHH
Confidence 46889888876431 223467889999877666665543 47999999875321 112221111111 1234555566
Q ss_pred hcccCCEEEEE
Q 029488 156 VLKEGGKFIAK 166 (192)
Q Consensus 156 ~LkpgG~~v~k 166 (192)
.++++|.++..
T Consensus 85 ~~~~~g~Iv~i 95 (241)
T PRK12428 85 RMAPGGAIVNV 95 (241)
T ss_pred hccCCcEEEEe
Confidence 67778888763
No 350
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.39 E-value=10 Score=30.95 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
.-+|+++|+|.|.++..+++..... .+ ......+++-||.||.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~---~p--~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKF---SP--EVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCT---TH--HHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHh---Ch--hhhhcceEEEEcCCHH
Confidence 3699999999999999998877511 00 0113478999999984
No 351
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.91 E-value=28 Score=29.30 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=53.1
Q ss_pred ccCCCeEEeEcCCCChHHHHH---HHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~ 111 (192)
+++|.+||=.|+ |+....+ ++..+ ...|+++|.++... -.++..+ -|..+......+
T Consensus 164 ~~~g~~vlI~g~--g~iG~~~~~lak~~G-------------~~~v~~~~~~~~~~~~~~~~g~~~~-v~~~~~~~~~~i 227 (351)
T cd08285 164 IKLGDTVAVFGI--GPVGLMAVAGARLRG-------------AGRIIAVGSRPNRVELAKEYGATDI-VDYKNGDVVEQI 227 (351)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHcCCceE-ecCCCCCHHHHH
Confidence 467889888875 4555444 43332 33689998875311 0122111 122222333344
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+...+..+|+|+... |. ...+..+.+.|+++|+++..
T Consensus 228 ~~~~~~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 228 LKLTGGKGVDAVIIAG-----GG------------QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred HHHhCCCCCcEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEe
Confidence 4444556799998532 10 12456678899999998863
No 352
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=75.40 E-value=21 Score=29.85 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=52.7
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++|++||=+|+ |+.+..+.+.... ...+ |++++.++... --++..+ -|..+.. ...+.+
T Consensus 161 ~~~g~~vlV~G~--G~vG~~~~~~ak~-----------~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~~~~~-~~~~~~ 225 (339)
T cd08239 161 VSGRDTVLVVGA--GPVGLGALMLARA-----------LGAEDVIGVDPSPERLELAKALGADFV-INSGQDD-VQEIRE 225 (339)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHhCCCEE-EcCCcch-HHHHHH
Confidence 367889988875 5665554433220 1345 99998775321 0122211 1222222 333444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+..+|+|+--. |. ...+..+.+.|+++|++++.
T Consensus 226 ~~~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 226 LTSGAGADVAIECS-----GN------------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HhCCCCCCEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEE
Confidence 44455899998432 10 12345678899999999864
No 353
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=74.98 E-value=23 Score=29.60 Aligned_cols=93 Identities=22% Similarity=0.196 Sum_probs=50.8
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC----CCCceEEecccCCchhHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP----IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~ 110 (192)
++++.+||-.|+ |+.+.. +++.. ... |++++.++... -.++..+ .+..+.. ...
T Consensus 157 ~~~~~~vlI~g~--g~~g~~~~~lA~~~--------------G~~~v~~~~~~~~~~~~l~~~g~~~~-~~~~~~~-~~~ 218 (343)
T cd08236 157 ITLGDTVVVIGA--GTIGLLAIQWLKIL--------------GAKRVIAVDIDDEKLAVARELGADDT-INPKEED-VEK 218 (343)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc--------------CCCEEEEEcCCHHHHHHHHHcCCCEE-ecCcccc-HHH
Confidence 468889999975 454444 44443 244 88887664210 0122111 1112222 333
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+....++..+|+|+... +. ...+..+.+.|+++|.++..
T Consensus 219 ~~~~~~~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 219 VRELTEGRGADLVIEAA-----GS------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHHhCCCCCCEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEE
Confidence 44455556799998532 10 12345678899999998764
No 354
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=74.91 E-value=34 Score=29.14 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=50.9
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~ 111 (192)
++++++||=.|+ |+.... +++..+ ...|+++|.++... -.++..+. +..+......+
T Consensus 184 ~~~g~~vlI~g~--g~vG~~~~~la~~~G-------------~~~v~~~~~~~~k~~~~~~~g~~~~i-~~~~~~~~~~v 247 (365)
T cd08278 184 PRPGSSIAVFGA--GAVGLAAVMAAKIAG-------------CTTIIAVDIVDSRLELAKELGATHVI-NPKEEDLVAAI 247 (365)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHcCCcEEe-cCCCcCHHHHH
Confidence 467888888875 455444 444443 33699999876321 01222111 12222222334
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+.. +..+|+|+--. |.. ..+..+.+.|+++|.++.
T Consensus 248 ~~~~-~~~~d~vld~~-----g~~------------~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 248 REIT-GGGVDYALDTT-----GVP------------AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred HHHh-CCCCcEEEECC-----CCc------------HHHHHHHHHhccCCEEEE
Confidence 4444 56799998532 110 234567888999999886
No 355
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.77 E-value=5 Score=31.13 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=30.1
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
+.++++|+|.+- +.+.|. ...--..++++|.++|||||++-|.+-+
T Consensus 43 F~dns~d~iyae--------HvlEHl-t~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 43 FEDNSVDAIYAE--------HVLEHL-TYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CCCcchHHHHHH--------HHHHHH-hHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 455688888762 222222 1122346799999999999999887643
No 356
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=74.69 E-value=8.3 Score=33.84 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC--CceEEecccCCchhH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNARTA 108 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~--~v~~~~~Di~~~~~~ 108 (192)
+-++||.=+|+|-=+.-.+...+ ....|++.|+++.+ .++ .+.....|.....
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~------------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll-- 115 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELA------------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL-- 115 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-S------------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH--
T ss_pred CceEEeccccccHHHHHHHHHcC------------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh--
Confidence 45899999999999977666643 35799999999852 122 2444445554321
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
......||+|=.|+- |.. ...+..|.+.+|.||.+.+..
T Consensus 116 -----~~~~~~fD~IDlDPf----GSp-----------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 116 -----YSRQERFDVIDLDPF----GSP-----------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----CHSTT-EEEEEE--S----S-------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -----hhccccCCEEEeCCC----CCc-----------cHhHHHHHHHhhcCCEEEEec
Confidence 124579999998851 111 135778899999999998854
No 357
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.78 E-value=4 Score=37.02 Aligned_cols=96 Identities=21% Similarity=0.152 Sum_probs=63.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C-CC---------ceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I-EG---------VIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~-~~---------v~~~~~Di~~~~~~ 108 (192)
++-+|||.=|++|--+.-.+...+ ...+|+|.|.++..- + .| ++....|......
T Consensus 109 ~~l~vLealsAtGlrslRya~El~------------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~- 175 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELP------------GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMY- 175 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhc------------chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHH-
Confidence 466899999999999988888775 567899999997421 0 11 1222334333211
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
........||+|-.|+- |. . ...|..|.+.++.||.+++..
T Consensus 176 ---~~~~~~~~FDvIDLDPy----Gs--~---------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 176 ---EHPMVAKFFDVIDLDPY----GS--P---------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ---hccccccccceEecCCC----CC--c---------cHHHHHHHHHhhcCCEEEEEe
Confidence 11123478999999851 10 0 145788999999999998853
No 358
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.92 E-value=17 Score=30.77 Aligned_cols=94 Identities=6% Similarity=0.009 Sum_probs=49.6
Q ss_pred ccCCCeEEeEcCCCChHH-HHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCC
Q 029488 39 FEGVKRVVDLCAAPGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG 117 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s-~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~ 117 (192)
.++|++||=+|||+=|.. ..++.+.. ...+|+++|.++... +-+.....+... .... .+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~------------g~~~vi~~~~~~~k~-~~a~~~~~~~~~----~~~~---~~ 220 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIY------------PESKLVVFGKHQEKL-DLFSFADETYLI----DDIP---ED 220 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhc------------CCCcEEEEeCcHhHH-HHHhhcCceeeh----hhhh---hc
Confidence 367999999998654433 23344321 246899999886321 001000111100 0111 11
Q ss_pred CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..+|+|+-- .|-... ...+..+.+.|++||.+++.
T Consensus 221 ~g~d~viD~-----~G~~~~---------~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 221 LAVDHAFEC-----VGGRGS---------QSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred cCCcEEEEC-----CCCCcc---------HHHHHHHHHhCcCCcEEEEE
Confidence 258888732 221000 13567788999999999864
No 359
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=72.79 E-value=39 Score=28.42 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=54.8
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++|.+||=.|+ |+....+.+.... ... .|++++.++... -.++..+ -|..+.+....+.+
T Consensus 170 ~~~g~~vlI~g~--g~vG~~a~q~a~~-----------~G~~~v~~~~~~~~~~~~~~~~ga~~~-i~~~~~~~~~~l~~ 235 (351)
T cd08233 170 FKPGDTALVLGA--GPIGLLTILALKA-----------AGASKIIVSEPSEARRELAEELGATIV-LDPTEVDVVAEVRK 235 (351)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEECCCHHHHHHHHHhCCCEE-ECCCccCHHHHHHH
Confidence 467888888864 6676665544321 134 788888765311 0122211 12333333444555
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|+|+-... . ...+..+.+.|+++|.++..
T Consensus 236 ~~~~~~~d~vid~~g-----~------------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 236 LTGGGGVDVSFDCAG-----V------------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred HhCCCCCCEEEECCC-----C------------HHHHHHHHHhccCCCEEEEE
Confidence 555556999985321 0 02355678899999998864
No 360
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=72.58 E-value=52 Score=27.09 Aligned_cols=94 Identities=14% Similarity=-0.060 Sum_probs=51.4
Q ss_pred ccCCCeEEeEcC--CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHH
Q 029488 39 FEGVKRVVDLCA--APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~--GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~ 112 (192)
+++|.+||=.|+ +-|..+..+++.. ..+|++++.++... -.++..+ -|..+......+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--------------G~~vi~~~~s~~~~~~l~~~Ga~~v-i~~~~~~~~~~v~ 205 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK--------------GCKVIGCAGSDDKVAWLKELGFDAV-FNYKTVSLEEALK 205 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHcCCCEE-EeCCCccHHHHHH
Confidence 578889887764 2333444455554 46899988765310 0132211 1222222333333
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+..+ ..+|+|+.-. | ...+..+.+.|+++|+++..
T Consensus 206 ~~~~-~gvd~vld~~-----g-------------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 206 EAAP-DGIDCYFDNV-----G-------------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HHCC-CCcEEEEECC-----C-------------HHHHHHHHHhhccCCEEEEE
Confidence 3333 5799998421 1 02345678899999999763
No 361
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.46 E-value=51 Score=26.81 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=51.6
Q ss_pred CCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
+++.+|=.|++. +|....+++.+.. ....|+.++.+.. ...+.+..+..|+++.+....
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~-----------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 73 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDA 73 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH-----------CCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHH
Confidence 367889999987 4888777776531 3567887766521 012345578899999887766
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -..+|+++.+..
T Consensus 74 ~~~~~~~~~g~iD~linnAg 93 (262)
T PRK07984 74 MFAELGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHHHHHhhcCCCCEEEECCc
Confidence 665432 146999999874
No 362
>PRK07904 short chain dehydrogenase; Provisional
Probab=72.44 E-value=33 Score=27.63 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=49.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~ 107 (192)
..+++||=.|+ +|+.+..+++..-.+ ...+|+.++.++.. ...++.++..|+.+.+.
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~----------gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~ 74 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKN----------APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDS 74 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhc----------CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHH
Confidence 35678888887 678887777764210 13688888877542 01257788999998776
Q ss_pred HHHHHhhc-CCCcccEEEeCC
Q 029488 108 AEVVIRHF-DGCKADLVVCDG 127 (192)
Q Consensus 108 ~~~~~~~~-~~~~~DlV~~d~ 127 (192)
..+..+.. .....|+++.+.
T Consensus 75 ~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 75 HPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHhcCCCCEEEEee
Confidence 44443332 224799888765
No 363
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=72.31 E-value=52 Score=27.21 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=53.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCceEEecccCCchhHHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
++++.+||=. |+|+.+..+.+.... ...+|+.+..+... .-.++..+ +.........+.
T Consensus 162 ~~~g~~vlI~--g~g~~g~~~~~la~~-----------~G~~v~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~l~ 226 (306)
T cd08258 162 IRPGDTVVVF--GPGPIGLLAAQVAKL-----------QGATVVVVGTEKDEVRLDVAKELGADAV--NGGEEDLAELVN 226 (306)
T ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHH-----------cCCEEEEECCCCCHHHHHHHHHhCCccc--CCCcCCHHHHHH
Confidence 4677777764 357787776555431 24567776432210 00133222 233333334444
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
...++..+|+++.... . ...+..+.+.|+++|+++..-.
T Consensus 227 ~~~~~~~vd~vld~~g-----~------------~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 227 EITDGDGADVVIECSG-----A------------VPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred HHcCCCCCCEEEECCC-----C------------hHHHHHHHHHhhcCCEEEEEcc
Confidence 4455567999986421 0 1235567788999999986433
No 364
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=71.50 E-value=48 Score=27.68 Aligned_cols=94 Identities=18% Similarity=0.015 Sum_probs=50.8
Q ss_pred ccCC--CeEEeEcC--CCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCC-----CCCCceEEecccCCchhH
Q 029488 39 FEGV--KRVVDLCA--APGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMA-----PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 39 l~~g--~~vLDlG~--GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~-----~~~~v~~~~~Di~~~~~~ 108 (192)
+++| ++||=.|+ |-|..+..+++.. .. +|++++.++.. .--++..+ -|..+....
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--------------G~~~Vi~~~~s~~~~~~~~~~lGa~~v-i~~~~~~~~ 214 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLL--------------GCSRVVGICGSDEKCQLLKSELGFDAA-INYKTDNVA 214 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHc--------------CCCEEEEEcCCHHHHHHHHHhcCCcEE-EECCCCCHH
Confidence 4555 88888876 2333444455554 34 79999877531 10233221 122222233
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..+.+..+ +++|+|+... |. ..+..+.+.|+++|+++..
T Consensus 215 ~~i~~~~~-~gvd~vid~~-----g~-------------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 215 ERLRELCP-EGVDVYFDNV-----GG-------------EISDTVISQMNENSHIILC 253 (345)
T ss_pred HHHHHHCC-CCceEEEECC-----Cc-------------HHHHHHHHHhccCCEEEEE
Confidence 33444333 5899998421 10 1235577899999999863
No 365
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.46 E-value=47 Score=25.96 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=66.7
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~~ 111 (192)
++++||=.|++ |+.+..+++.... ...+|++++.++.. ...++.++.+|+++.+....+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK-----------EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNV 71 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHH
Confidence 36788888885 7787777776531 35789999987631 112567789999998766555
Q ss_pred HhhcC--CCcccEEEeCCCCCCC-CCccccHHH---HHH--HHHHHHHHHHHhcccCCEEEEEe
Q 029488 112 IRHFD--GCKADLVVCDGAPDVT-GLHDMDEFV---QSQ--LILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 112 ~~~~~--~~~~DlV~~d~~~~~~-g~~~~~~~~---~~~--l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+... -+.+|.++........ .....+.+. ... -....+......++++|.+++..
T Consensus 72 ~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 72 IEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44321 1357888876532111 111111111 000 11223555667778899887754
No 366
>PRK08324 short chain dehydrogenase; Validated
Probab=71.32 E-value=33 Score=32.31 Aligned_cols=115 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------C---CCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------I---EGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------~---~~v~~~~~Di~~~~~~~~~ 111 (192)
+|+++|=.|+ +|+++..+++.... .+..|+.+|.++... + .++.++..|+++.+....+
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~-----------~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~ 488 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAA-----------EGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAA 488 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHH-----------CcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHH
Confidence 3677887775 56677666665431 356899999886310 1 2567788999998765554
Q ss_pred Hhhc--CCCcccEEEeCCCCCCCC-Cccc--cHHH---HHHH--HHHHHHHHHHhccc---CCEEEEEe
Q 029488 112 IRHF--DGCKADLVVCDGAPDVTG-LHDM--DEFV---QSQL--ILAGLTVVTHVLKE---GGKFIAKI 167 (192)
Q Consensus 112 ~~~~--~~~~~DlV~~d~~~~~~g-~~~~--~~~~---~~~l--~~~~l~~a~~~Lkp---gG~~v~k~ 167 (192)
.+.. ..+++|.|+.+......+ ..+. +.+. .... ...+++.+.+.++. ||.+++..
T Consensus 489 ~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 489 FEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4332 123799999886422111 1111 1111 1111 22345566677766 68887643
No 367
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=71.24 E-value=36 Score=29.10 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=50.8
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCC--chhHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITN--ARTAE 109 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~--~~~~~ 109 (192)
+++|++||=.|+| +.... +++..+ ..+|+++|.++... --++... -|..+ .....
T Consensus 183 ~~~g~~VlV~G~G--~iG~~a~q~Ak~~G-------------~~~Vi~~~~~~~~~~~a~~~Ga~~~-i~~~~~~~~~~~ 246 (368)
T TIGR02818 183 VEEGDTVAVFGLG--GIGLSVIQGARMAK-------------ASRIIAIDINPAKFELAKKLGATDC-VNPNDYDKPIQE 246 (368)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHhCCCeE-EcccccchhHHH
Confidence 4678999988864 55444 444432 23799999876321 0122211 12221 11222
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC-CEEEEEe
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAKI 167 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg-G~~v~k~ 167 (192)
.+.+... ..+|+|+--. |. ...+..+.+.+++| |++++.-
T Consensus 247 ~v~~~~~-~g~d~vid~~-----G~------------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 247 VIVEITD-GGVDYSFECI-----GN------------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred HHHHHhC-CCCCEEEECC-----CC------------HHHHHHHHHHhhcCCCeEEEEe
Confidence 2333333 3789888431 11 13456677889886 9987643
No 368
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.52 E-value=27 Score=29.27 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=51.4
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC--C--CCceEEecccCCchh---HH
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP--I--EGVIQVQGDITNART---AE 109 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~--~--~~v~~~~~Di~~~~~---~~ 109 (192)
.+++|.+||=.|+ |+.+..+.+.... .... |++++.++... . .++..+. |..+... ..
T Consensus 159 ~~~~g~~vlI~g~--g~vG~~a~~lak~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~ 224 (343)
T cd05285 159 GVRPGDTVLVFGA--GPIGLLTAAVAKA-----------FGATKVVVTDIDPSRLEFAKELGATHTV-NVRTEDTPESAE 224 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEECCCHHHHHHHHHcCCcEEe-ccccccchhHHH
Confidence 3578888888764 5555554443320 1244 88887654210 0 0221111 1111111 23
Q ss_pred HHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 110 ~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+.+...+..+|+|+.... . ...+..+.+.|+++|.++..
T Consensus 225 ~~~~~~~~~~~d~vld~~g-----~------------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 225 KIAELLGGKGPDVVIECTG-----A------------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHHhCCCCCCEEEECCC-----C------------HHHHHHHHHHhhcCCEEEEE
Confidence 3444555667999985321 0 01345678899999998863
No 369
>PRK06940 short chain dehydrogenase; Provisional
Probab=70.45 E-value=57 Score=26.56 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=61.8
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCceEEecccCCchhHHHHHh
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~-~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.+|=-|+ |++...+++.+. ...+|+.+|.++.. . -.++.++..|+++.+....+.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~------------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~ 69 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG------------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAA 69 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh------------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 4444454 689888888874 36789999877521 0 1246678899999877665554
Q ss_pred hcC-CCcccEEEeCCCCCCCCCccccHHHHHHH--HHHHHHHHHHhcccCCEEEE
Q 029488 114 HFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQL--ILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 114 ~~~-~~~~DlV~~d~~~~~~g~~~~~~~~~~~l--~~~~l~~a~~~LkpgG~~v~ 165 (192)
... ...+|.++.+...... ...+++.....+ ...+++.+...++++|..+.
T Consensus 70 ~~~~~g~id~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 70 TAQTLGPVTGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred HHHhcCCCCEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 331 2479999988653211 112222222221 12335556666677776654
No 370
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.44 E-value=55 Score=26.37 Aligned_cols=77 Identities=14% Similarity=-0.025 Sum_probs=52.8
Q ss_pred CCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--C-------CC--CCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PI--EGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~--~-------~~--~~v~~~~~Di~~~~~~ 108 (192)
.++.+|=.|+++ +++...+++.+.. ...+|+.++.+.. . .. .++..+..|+++.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 74 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-----------AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI 74 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH
Confidence 478999999985 8898888887641 3567887764321 0 11 2466788999998776
Q ss_pred HHHHhhcC--CCcccEEEeCCC
Q 029488 109 EVVIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 109 ~~~~~~~~--~~~~DlV~~d~~ 128 (192)
..+.+... -+.+|.++.+..
T Consensus 75 ~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 75 TACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHHHHhCCCccEEEECcc
Confidence 66665432 157999988764
No 371
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=70.23 E-value=29 Score=30.31 Aligned_cols=75 Identities=23% Similarity=0.161 Sum_probs=51.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~ 107 (192)
..+++||=.| |+|..+..+++.+-. ...+|++++.++.. ..+++.++.+|+++.+.
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~-----------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 125 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVR-----------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADS 125 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHH
Confidence 3477899888 688888887766421 24689999876521 12478889999999876
Q ss_pred HHHHHhhcCCCcccEEEeCC
Q 029488 108 AEVVIRHFDGCKADLVVCDG 127 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~ 127 (192)
...+.+... ..+|.|++..
T Consensus 126 l~~~~~~~~-~~~D~Vi~~a 144 (390)
T PLN02657 126 LRKVLFSEG-DPVDVVVSCL 144 (390)
T ss_pred HHHHHHHhC-CCCcEEEECC
Confidence 655544221 1689998754
No 372
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=70.04 E-value=8.1 Score=32.95 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 147 LAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 147 ~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
...|..+..+|+|||.+++-+|+.-.
T Consensus 220 ~~~L~~~~~~L~~gGrl~VISfHSLE 245 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIISFHSLE 245 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 45688899999999999998887544
No 373
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=69.83 E-value=31 Score=29.16 Aligned_cols=101 Identities=19% Similarity=0.074 Sum_probs=57.8
Q ss_pred HcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CC-CCceEEecccCCchhHHH
Q 029488 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI-EGVIQVQGDITNARTAEV 110 (192)
Q Consensus 35 ~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---~~-~~v~~~~~Di~~~~~~~~ 110 (192)
++...+||..||=- ++-||....+.|...- ....+++.-.+... .. .+++ ..-|....+...+
T Consensus 140 e~y~vkpGhtVlvh-aAAGGVGlll~Ql~ra-----------~~a~tI~~asTaeK~~~akenG~~-h~I~y~~eD~v~~ 206 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVH-AAAGGVGLLLCQLLRA-----------VGAHTIATASTAEKHEIAKENGAE-HPIDYSTEDYVDE 206 (336)
T ss_pred HhcCCCCCCEEEEE-eccccHHHHHHHHHHh-----------cCcEEEEEeccHHHHHHHHhcCCc-ceeeccchhHHHH
Confidence 34446899888744 4456666665555430 24667777655421 11 2332 2224444444445
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+.+...+.++|.+.-.. | ...++..+..|||+|++|..
T Consensus 207 V~kiTngKGVd~vyDsv-----G-------------~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 207 VKKITNGKGVDAVYDSV-----G-------------KDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred HHhccCCCCceeeeccc-----c-------------chhhHHHHHHhccCceEEEe
Confidence 55555577899888432 2 12455678899999998864
No 374
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.86 E-value=15 Score=34.20 Aligned_cols=102 Identities=17% Similarity=0.082 Sum_probs=61.5
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhcCCCc
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~~~~~ 119 (192)
.|+= ||-|.+++.+++.... ....++.+|.+|.. ...+...+.||.++++...+ ..-+.
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~----agi~~ 464 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMA-----------NKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA----AGAEK 464 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh----cCCcc
Confidence 4444 5556677777765431 25689999999852 22467789999999875432 23357
Q ss_pred ccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHH
Q 029488 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 176 (192)
Q Consensus 120 ~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l 176 (192)
.|.+++-.. +...+. .++. ..+.+.|..+++++..+..+...+
T Consensus 465 A~~vv~~~~---------d~~~n~----~i~~-~~r~~~p~~~IiaRa~~~~~~~~L 507 (601)
T PRK03659 465 AEAIVITCN---------EPEDTM----KIVE-LCQQHFPHLHILARARGRVEAHEL 507 (601)
T ss_pred CCEEEEEeC---------CHHHHH----HHHH-HHHHHCCCCeEEEEeCCHHHHHHH
Confidence 888876431 111111 1222 345577888888877665544443
No 375
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=68.45 E-value=47 Score=27.89 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=50.8
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.++|.+||=.|+ |+....+.+.... ... .|++++.++... -.++..+ -|..+.. ...+.+
T Consensus 158 ~~~g~~vlV~G~--g~vG~~~~~~a~~-----------~G~~~v~~~~~~~~~~~~~~~~Ga~~~-i~~~~~~-~~~~~~ 222 (347)
T PRK10309 158 GCEGKNVIIIGA--GTIGLLAIQCAVA-----------LGAKSVTAIDINSEKLALAKSLGAMQT-FNSREMS-APQIQS 222 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEECCCHHHHHHHHHcCCceE-ecCcccC-HHHHHH
Confidence 467889988876 5555444333210 124 478888776321 0122111 1111111 223444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|.++.|. .|. ...+..+.+.|++||.+++.
T Consensus 223 ~~~~~~~d~~v~d~----~G~------------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 223 VLRELRFDQLILET----AGV------------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred HhcCCCCCeEEEEC----CCC------------HHHHHHHHHHhhcCCEEEEE
Confidence 44555788444442 121 13456788999999998874
No 376
>PRK06523 short chain dehydrogenase; Provisional
Probab=68.44 E-value=30 Score=27.57 Aligned_cols=76 Identities=20% Similarity=0.094 Sum_probs=50.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC-CCceEEecccCCchhHHHHHhhcC--C
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFD--G 117 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~-~~v~~~~~Di~~~~~~~~~~~~~~--~ 117 (192)
+++++|=.|+ +|+....+++.... ...+|++++.++.... .++.++.+|+.+.+....+.+... -
T Consensus 8 ~~k~vlItGa-s~gIG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 8 AGKRALVTGG-TKGIGAATVARLLE-----------AGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCEEEEECC-CCchhHHHHHHHHH-----------CCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 4778988885 45677666665431 3578999988764332 356788999999876554443321 1
Q ss_pred CcccEEEeCCC
Q 029488 118 CKADLVVCDGA 128 (192)
Q Consensus 118 ~~~DlV~~d~~ 128 (192)
..+|.|+.+..
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK06523 76 GGVDILVHVLG 86 (260)
T ss_pred CCCCEEEECCc
Confidence 46899988764
No 377
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.29 E-value=36 Score=28.15 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=50.2
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
++++.+||-.|+ |+.+..+.+.... .... |++++.++... -.++..+. +..+...... .
T Consensus 157 ~~~g~~vlI~g~--g~vg~~~~~la~~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~--~ 220 (334)
T cd08234 157 IKPGDSVLVFGA--GPIGLLLAQLLKL-----------NGASRVTVAEPNEEKLELAKKLGATETV-DPSREDPEAQ--K 220 (334)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEECCCHHHHHHHHHhCCeEEe-cCCCCCHHHH--H
Confidence 468899999964 6665554443321 1244 78887765321 01222111 1111111111 2
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+..+|+++.... . ...+..+.+.|+++|+++..
T Consensus 221 ~~~~~~vd~v~~~~~-----~------------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 221 EDNPYGFDVVIEATG-----V------------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred HhcCCCCcEEEECCC-----C------------hHHHHHHHHHHhcCCEEEEE
Confidence 334567999996321 0 02345667889999998763
No 378
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.96 E-value=51 Score=26.93 Aligned_cols=96 Identities=19% Similarity=0.102 Sum_probs=50.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
.+|++||=.|+ |+....+++..... ....|+++|.++... --++.... |..+. ...+.+..
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~----------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~--~~~~~~~~ 183 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAA----------GAARVVAADPSPDRRELALSFGATALA-EPEVL--AERQGGLQ 183 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc----------CCCEEEEECCCHHHHHHHHHcCCcEec-Cchhh--HHHHHHHh
Confidence 47889998876 45554443332100 123489998776321 01222111 11111 12233333
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+..+|+|+--. |. ...+..+.+.|+++|++++.-
T Consensus 184 ~~~g~d~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 184 NGRGVDVALEFS-----GA------------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCCCEEEECC-----CC------------hHHHHHHHHHhcCCCEEEEec
Confidence 445799988532 11 134567889999999998743
No 379
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=67.93 E-value=45 Score=27.87 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=50.7
Q ss_pred cCCCeEEeEcCCCChHHHHH---HHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHH
Q 029488 40 EGVKRVVDLCAAPGSWSQVL---SRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l---~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~ 112 (192)
.+|++||=.|+ |+.+..+ ++..+ ...|++++.++... --++.. .-|..+......+.
T Consensus 162 ~~g~~vlV~~~--g~vg~~~~~la~~~G-------------~~~v~~~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~~~~ 225 (341)
T PRK05396 162 LVGEDVLITGA--GPIGIMAAAVAKHVG-------------ARHVVITDVNEYRLELARKMGATR-AVNVAKEDLRDVMA 225 (341)
T ss_pred CCCCeEEEECC--CHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHhCCcE-EecCccccHHHHHH
Confidence 57888887664 5555444 44432 22677886554211 012211 11222333334444
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
....+..+|+|+.-. |. ...+..+.+.|+++|.++..-
T Consensus 226 ~~~~~~~~d~v~d~~-----g~------------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 226 ELGMTEGFDVGLEMS-----GA------------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred HhcCCCCCCEEEECC-----CC------------HHHHHHHHHHHhcCCEEEEEe
Confidence 444556899998621 10 123455778999999988753
No 380
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=67.72 E-value=7.5 Score=33.00 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHH
Q 029488 147 LAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVN 181 (192)
Q Consensus 147 ~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~ 181 (192)
...|..+..+|+|||.+++-+|+.-..--+-+.++
T Consensus 216 ~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~ 250 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFR 250 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHH
Confidence 45688899999999999998887544333333344
No 381
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=67.57 E-value=10 Score=35.58 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=47.4
Q ss_pred CcccEEEeCCCCCCCC-CccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC-----eeeEEe
Q 029488 118 CKADLVVCDGAPDVTG-LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV-----KTPVYF 191 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g-~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~-----~v~~~~ 191 (192)
..+|+++++....... .+ .. .......++..+.+.|+.||.+++-+|...+.++++..+..+++ .++||+
T Consensus 363 ~~vD~LI~ESTYg~~~~~~-~~---r~~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~ 438 (630)
T TIGR03675 363 PRVETLIMESTYGGRDDYQ-PS---REEAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYL 438 (630)
T ss_pred CCCCEEEEeCccCCCCCCC-CC---HHHHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEE
Confidence 3689999986532110 01 11 11122355667778899999999999999999999998887653 467764
No 382
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=67.15 E-value=19 Score=31.36 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=58.5
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
++|..|.=+|||-=|.+.....+.. ...+|+|+|+++... -.+++.........+....+.+.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~a------------gA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~- 250 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAA------------GAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVEL- 250 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHc------------CCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHh-
Confidence 5788999999988888877666654 578999999998531 12333211111000233333333
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+...|.++- +.|. ...++.++.+++++|..++.
T Consensus 251 T~gG~d~~~e-----~~G~------------~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 251 TDGGADYAFE-----CVGN------------VEVMRQALEATHRGGTSVII 284 (366)
T ss_pred cCCCCCEEEE-----ccCC------------HHHHHHHHHHHhcCCeEEEE
Confidence 3347777752 2221 13566778888889998764
No 383
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=66.88 E-value=73 Score=26.39 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=24.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
...+||+||+|+|--+..++-.. ...|.-.|...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--------------~~~v~ltD~~~ 119 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--------------GAEVVLTDLPK 119 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--------------cceeccCCchh
Confidence 35579999999995556665554 47777777665
No 384
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=66.87 E-value=25 Score=28.17 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--CCCCCceEEecccCCchhHHHHHhhcCCCcccEEEeCC
Q 029488 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (192)
Q Consensus 50 ~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~--~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~ 127 (192)
|++|.-...+++.... .+-+|+|+=.++. ...++++..+.|+.++.... +.+ ..+|.|++..
T Consensus 7 gAsG~~Gs~i~~EA~~-----------RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a---~~l--~g~DaVIsA~ 70 (211)
T COG2910 7 GASGKAGSRILKEALK-----------RGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLA---SDL--AGHDAVISAF 70 (211)
T ss_pred ecCchhHHHHHHHHHh-----------CCCeeEEEEeChHhccccccceeecccccChhhhH---hhh--cCCceEEEec
Confidence 5677777666664321 3568999988874 23378889999999976432 233 4899999875
Q ss_pred CC
Q 029488 128 AP 129 (192)
Q Consensus 128 ~~ 129 (192)
..
T Consensus 71 ~~ 72 (211)
T COG2910 71 GA 72 (211)
T ss_pred cC
Confidence 43
No 385
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=66.34 E-value=78 Score=26.57 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----C------------CCCceEEecccCCchhHHHHHhh
Q 029488 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----P------------IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 51 GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~------------~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
|+|..+..+++.+-. .+.+|+++|..+.. . -.++.++.+|+++.+...++.+
T Consensus 8 atGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~- 75 (343)
T TIGR01472 8 ITGQDGSYLAEFLLE-----------KGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIID- 75 (343)
T ss_pred CCCcHHHHHHHHHHH-----------CCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHH-
Confidence 568888888776531 35689999876421 0 1247888999999766544433
Q ss_pred cCCCcccEEEeCCCC
Q 029488 115 FDGCKADLVVCDGAP 129 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~ 129 (192)
+..+|.|+.-.+.
T Consensus 76 --~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 76 --EIKPTEIYNLAAQ 88 (343)
T ss_pred --hCCCCEEEECCcc
Confidence 3357988877653
No 386
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=65.59 E-value=40 Score=28.37 Aligned_cols=86 Identities=10% Similarity=-0.022 Sum_probs=47.4
Q ss_pred ccCCCeEEeEcCCCChHH-HHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s-~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++|.+||=.|+|+-+.. ..+++.. ...|++++.++... --++..+ .|..+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--------------G~~vi~~~~~~~~~~~a~~~Ga~~v-i~~~~~-------- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ--------------GATVHVMTRGAAARRLALALGAASA-GGAYDT-------- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC--------------CCeEEEEeCChHHHHHHHHhCCcee-cccccc--------
Confidence 478999999997443322 3334443 36799998876421 0122211 111110
Q ss_pred hcCCCcccEEE-eCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 114 HFDGCKADLVV-CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 114 ~~~~~~~DlV~-~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
..+.+|.++ +++. ...+..+.+.|++||++++.=
T Consensus 220 --~~~~~d~~i~~~~~------------------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 --PPEPLDAAILFAPA------------------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --CcccceEEEECCCc------------------HHHHHHHHHhhCCCcEEEEEe
Confidence 123577654 2321 124567889999999998743
No 387
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=65.41 E-value=51 Score=27.55 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=51.5
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
..+|.++|-.|+ |+.+..+.+.... .+.+ |++++.++... -.++..+ -|..+......+.+
T Consensus 159 ~~~g~~vlI~~~--g~vg~~a~~la~~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~~-v~~~~~~~~~~l~~ 224 (340)
T TIGR00692 159 PISGKSVLVTGA--GPIGLMAIAVAKA-----------SGAYPVIVSDPNEYRLELAKKMGATYV-VNPFKEDVVKEVAD 224 (340)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEECCCHHHHHHHHHhCCcEE-EcccccCHHHHHHH
Confidence 457888887553 6666554443220 1344 88886654211 0122211 12222233344444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+..+|+|+.... . ...+..+.+.|+++|+++..
T Consensus 225 ~~~~~~~d~vld~~g-----~------------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 225 LTDGEGVDVFLEMSG-----A------------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred hcCCCCCCEEEECCC-----C------------HHHHHHHHHhhcCCCEEEEE
Confidence 445567999986411 0 12345677889999998764
No 388
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=64.77 E-value=75 Score=27.12 Aligned_cols=92 Identities=17% Similarity=0.065 Sum_probs=49.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.++|++||=.|+ |+....+.+.... ...+|++++.++... --++..+. |..+. ..+.+
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~-----------~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi-~~~~~---~~~~~ 243 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKA-----------FGLKVTVISSSSNKEDEAINRLGADSFL-VSTDP---EKMKA 243 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHH-----------CCCEEEEEeCCcchhhhHHHhCCCcEEE-cCCCH---HHHHh
Confidence 467888888876 5555444433210 245788888775321 11332211 11121 12223
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.. + .+|+|+-- .|. ...+..+.+.|++||+++..
T Consensus 244 ~~-~-~~D~vid~-----~g~------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 244 AI-G-TMDYIIDT-----VSA------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred hc-C-CCCEEEEC-----CCC------------HHHHHHHHHHhcCCcEEEEe
Confidence 22 2 58888842 120 12456678999999999864
No 389
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=64.41 E-value=13 Score=30.61 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.7
Q ss_pred CCeEEeEcCCCChHHHHHHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRK 62 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~ 62 (192)
...|.++|.||||.+..+...
T Consensus 51 ~~~v~eIgPgpggitR~il~a 71 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA 71 (326)
T ss_pred cceeEEecCCCCchhHHHHhc
Confidence 468999999999999998865
No 390
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.20 E-value=75 Score=25.61 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=50.2
Q ss_pred CCCeEEeEcC-CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC---C------CCCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP---M------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~-GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~---~------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++.+|=.|+ |++++...+++++.. ...+|+.++... . ........+..|+++.+....
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 73 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKR-----------EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDA 73 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHH-----------CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHH
Confidence 3678888898 588888888877641 356777665321 0 011233457889999877766
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -+.+|+++.+..
T Consensus 74 ~~~~~~~~~g~iD~lvnnAG 93 (260)
T PRK06997 74 LFASLGQHWDGLDGLVHSIG 93 (260)
T ss_pred HHHHHHHHhCCCcEEEEccc
Confidence 665432 157999999864
No 391
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=64.16 E-value=33 Score=29.56 Aligned_cols=86 Identities=19% Similarity=0.050 Sum_probs=56.4
Q ss_pred HhhHHHHHhHcCcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC----CCceEEecc
Q 029488 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI----EGVIQVQGD 101 (192)
Q Consensus 26 ~~kl~~i~~~~~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~----~~v~~~~~D 101 (192)
++.|.+...+..++..+++||=.| |+|-.+..++..+.. .+.+|+++|..+.... ..+.++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~IlVtG-gtGfIG~~l~~~L~~-----------~G~~V~~v~r~~~~~~~~~~~~~~~~~~D 72 (370)
T PLN02695 5 AYTLAELEREPYWPSEKLRICITG-AGGFIASHIARRLKA-----------EGHYIIASDWKKNEHMSEDMFCHEFHLVD 72 (370)
T ss_pred ccchhhcCCCCCCCCCCCEEEEEC-CccHHHHHHHHHHHh-----------CCCEEEEEEeccccccccccccceEEECC
Confidence 466777766777788899999665 678888777776631 2468999997542111 135677899
Q ss_pred cCCchhHHHHHhhcCCCcccEEEeCCC
Q 029488 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~DlV~~d~~ 128 (192)
+++......+ + ..+|.|+.-..
T Consensus 73 l~d~~~~~~~---~--~~~D~Vih~Aa 94 (370)
T PLN02695 73 LRVMENCLKV---T--KGVDHVFNLAA 94 (370)
T ss_pred CCCHHHHHHH---H--hCCCEEEEccc
Confidence 9986543322 2 25788876543
No 392
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.12 E-value=4.3 Score=31.29 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=28.2
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++..+.+|||+|-|......++.. .-.-+|++++|.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g--------------~~~a~GvELNpw 106 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG--------------LRPAVGVELNPW 106 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC--------------CCcCCceeccHH
Confidence 344689999999999988877663 245679999985
No 393
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=63.74 E-value=15 Score=32.28 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=39.3
Q ss_pred CCceEEecccCCchhHHHHHhhcCCCcccEE-EeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLV-VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 93 ~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV-~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
++++..++++.+ +.+..+++++|.+ ++|-. + +.......+....+.+.++|||.++...+.
T Consensus 275 drv~i~t~si~~------~L~~~~~~s~~~~vL~D~~-D---------wm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEE------VLRRLPPGSFDRFVLSDHM-D---------WMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHH------HHHhCCCCCeeEEEecchh-h---------hCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 466667777765 3344566788875 55531 1 112233356677889999999999987654
No 394
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=63.55 E-value=2.9 Score=34.54 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=25.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++-++||+|.|---+--.+-.+. =+.+.+|.|+++.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-------------YgwrfvGseid~~ 113 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-------------YGWRFVGSEIDSQ 113 (292)
T ss_pred CceEEEeeccCccccccccccee-------------ecceeecCccCHH
Confidence 55688999877665555554443 2578999999873
No 395
>PRK06701 short chain dehydrogenase; Provisional
Probab=63.48 E-value=83 Score=25.88 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=63.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~~~ 110 (192)
++++|=.|+ +|+.+..++.++.. ...+|+.++.+.... -.++.++..|+++.+....
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~-----------~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAK-----------EGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 678888885 66667666665431 357888887764210 1246678899999876555
Q ss_pred HHhhc--CCCcccEEEeCCCCC-C-CCCccc--cHHH---HHHH--HHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHF--DGCKADLVVCDGAPD-V-TGLHDM--DEFV---QSQL--ILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~--~~~~~DlV~~d~~~~-~-~g~~~~--~~~~---~~~l--~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+.+.. .-..+|.|+.+.... . ....+. +.+. ...+ ...+++.+.+.++++|.++...
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 44321 113689998775421 1 111111 1111 1111 2234555566677888887643
No 396
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.38 E-value=18 Score=31.72 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~~~ 110 (192)
+.+|+|-=+|+|.=+.-++-..+ ...|+.-|++|.+. ..+...++.|... -
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-------------~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~-----l 114 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-------------VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANA-----L 114 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-------------ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHH-----H
Confidence 67999999999999987777653 34899999999531 1122222223222 1
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+ +.....||+|=.|+- |.. - ..+..|.+.+|.||.+.+..
T Consensus 115 m--~~~~~~fd~IDiDPF----GSP--a---------PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 115 L--HELHRAFDVIDIDPF----GSP--A---------PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred H--HhcCCCccEEecCCC----CCC--c---------hHHHHHHHHhhcCCEEEEEe
Confidence 1 112268999988851 111 1 24567889999999998854
No 397
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=63.10 E-value=5.7 Score=33.95 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------------CCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~------------~~~v~~~~~Di~~~~~~ 108 (192)
.|..|+||=+|=|-|+....=+. ....|+|+|.+|..- ..+...+.||.+...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-------------gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-- 258 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-------------GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-- 258 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-------------CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--
Confidence 57899999999999998433333 368999999999521 112233445554432
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEec
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 168 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~ 168 (192)
+....|-|..-.-|+..+.| ..|.++|||.|.=++.++
T Consensus 259 -------~~~~AdrVnLGLlPSse~~W---------------~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 259 -------PRLRADRVNLGLLPSSEQGW---------------PTAIKALKPEGGSILHIH 296 (351)
T ss_pred -------ccccchheeeccccccccch---------------HHHHHHhhhcCCcEEEEe
Confidence 34466777665555433322 357889999666233344
No 398
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=62.95 E-value=77 Score=25.29 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=50.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------CCCceEEecccCCchhHHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------IEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------~~~v~~~~~Di~~~~~~~~~~ 112 (192)
+++++|=.|+ +|++...+++++-. ...+|+.++.+.... -.++..+..|+++.+....+.
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAK-----------AGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIV 74 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence 4788898885 56777777766531 467888887654210 124677899999987766655
Q ss_pred hhc--CCCcccEEEeCCC
Q 029488 113 RHF--DGCKADLVVCDGA 128 (192)
Q Consensus 113 ~~~--~~~~~DlV~~d~~ 128 (192)
+.. .-+++|.++.+..
T Consensus 75 ~~~~~~~g~iD~lv~~ag 92 (251)
T PRK12481 75 SQAVEVMGHIDILINNAG 92 (251)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 432 1147899998864
No 399
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=62.73 E-value=6.5 Score=34.67 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=14.3
Q ss_pred CCeEEeEcCCCChHHHH
Q 029488 42 VKRVVDLCAAPGSWSQV 58 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~ 58 (192)
..+|+|+|||+|..+..
T Consensus 64 ~~~iaDlGcs~G~ntl~ 80 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIH 80 (386)
T ss_pred ceeEEEecCCCCccHHH
Confidence 56899999999987744
No 400
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=62.63 E-value=56 Score=27.32 Aligned_cols=95 Identities=18% Similarity=0.077 Sum_probs=49.3
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++|.+||=.|+ |+....+.+.... ... .|++++-++... -.++..+ -+....... .+.+.
T Consensus 162 ~~g~~vlV~g~--g~vg~~~~~la~~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~~ 226 (341)
T cd05281 162 VSGKSVLITGC--GPIGLMAIAVAKA-----------AGASLVIASDPNPYRLELAKKMGADVV-INPREEDVV-EVKSV 226 (341)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEECCCHHHHHHHHHhCccee-eCcccccHH-HHHHH
Confidence 67888888664 5655554443321 134 688876543211 0122111 111122222 34444
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+++.+|+|+.... . ......+.+.|+++|+++..
T Consensus 227 ~~~~~vd~vld~~g-----~------------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 227 TDGTGVDVVLEMSG-----N------------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred cCCCCCCEEEECCC-----C------------HHHHHHHHHHhccCCEEEEE
Confidence 55668999996421 0 12345567889999998753
No 401
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=62.60 E-value=41 Score=27.83 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcccCCEEEEEecCC
Q 029488 147 LAGLTVVTHVLKEGGKFIAKIFRG 170 (192)
Q Consensus 147 ~~~l~~a~~~LkpgG~~v~k~~~~ 170 (192)
..+|...+..|.|||.+++--|..
T Consensus 192 ~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 192 KDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHhhcCCCeEEEEeCCCC
Confidence 467888899999999998865554
No 402
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.58 E-value=84 Score=25.60 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCeEEeEcCC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHHHH
Q 029488 42 VKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 42 g~~vLDlG~G-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~~~ 111 (192)
++.+|=.|++ ++++...+++.+.. ..++|+.+..+.. ..+.....++.|+.+.+....+
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~-----------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA-----------AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHH
Confidence 6788888987 58899888887641 3567777654321 0122345678999998776666
Q ss_pred HhhcC--CCcccEEEeCCCCCCC----C-C--ccccHHHH---HHH--HHHHHHHHHHhcccCCEEEEEe
Q 029488 112 IRHFD--GCKADLVVCDGAPDVT----G-L--HDMDEFVQ---SQL--ILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 112 ~~~~~--~~~~DlV~~d~~~~~~----g-~--~~~~~~~~---~~l--~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
.+... -+.+|+++.+...... + . .+.+++.. ..+ ...+++.+...++.+|.++...
T Consensus 79 ~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred HHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 55432 2479999998643210 1 0 11112221 111 1233455567777788887643
No 403
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=62.27 E-value=13 Score=27.32 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=32.2
Q ss_pred ceEEecccCCchhHHHHHhhcCCCcccEEEeCC-CCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 95 v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
++...||+.+. ...+. ..+|.|.-|+ +|. .|++. .....+..+.+.++|||++....
T Consensus 33 L~L~~gDa~~~------l~~l~-~~~Da~ylDgFsP~----~nPel-----Ws~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 33 LTLWFGDAREM------LPQLD-ARFDAWYLDGFSPA----KNPEL-----WSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp EEEEES-HHHH------HHHB--T-EEEEEE-SS-TT----TSGGG-----SSHHHHHHHHHHEEEEEEEEES-
T ss_pred EEEEEcHHHHH------HHhCc-ccCCEEEecCCCCc----CCccc-----CCHHHHHHHHHHhCCCcEEEEee
Confidence 34567777542 22233 5999999997 332 12221 12357888899999999987633
No 404
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=62.14 E-value=3.1 Score=34.09 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=48.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCceEEecccCCchhH
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTA 108 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----------~~~v~~~~~Di~~~~~~ 108 (192)
.+|..++|+--|.||.+..+.++. +...+++.|..|.+. .+.+..+-++..+....
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~-------------se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKH-------------SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhC-------------cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHH
Confidence 358899999999999999999997 468899999998531 12222233333332211
Q ss_pred HHHHhh-cCCCcccEEEeCCC
Q 029488 109 EVVIRH-FDGCKADLVVCDGA 128 (192)
Q Consensus 109 ~~~~~~-~~~~~~DlV~~d~~ 128 (192)
+.++ +.+.++|-|+.|..
T Consensus 109 --~~~~gl~~~~vDGiLmDlG 127 (303)
T KOG2782|consen 109 --IADTGLLDVGVDGILMDLG 127 (303)
T ss_pred --HHHhCCCcCCcceEEeecC
Confidence 1111 34568888888853
No 405
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=62.06 E-value=7.4 Score=33.26 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHc
Q 029488 147 LAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNK 182 (192)
Q Consensus 147 ~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~ 182 (192)
...|..+..+|+|||.+++-+|+.-...-+-+.++.
T Consensus 221 ~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~ 256 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRE 256 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHH
Confidence 456888999999999999988875444333344444
No 406
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.96 E-value=86 Score=25.52 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+++.+|=.|++. +++...+++.+.. ...+|+.++.+... .......+..|+++.+....
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-----------QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-----------CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 467899999886 4777777776531 35788877755310 11123457899999876665
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -+.+|.++.+..
T Consensus 75 ~~~~~~~~~g~iD~lVnnAG 94 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAIG 94 (271)
T ss_pred HHHHHHHHhCCCCEEEECCc
Confidence 555432 147999998864
No 407
>PLN02253 xanthoxin dehydrogenase
Probab=61.95 E-value=83 Score=25.37 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=49.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~~~ 112 (192)
++++|=.| |+|+++..+++.+.. .+.+|+.++.++.. ...++.++..|+++.+....+.
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 85 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHK-----------HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAV 85 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHH
Confidence 67888888 567788877776531 35789999876421 1125778899999987655544
Q ss_pred hhcC--CCcccEEEeCCC
Q 029488 113 RHFD--GCKADLVVCDGA 128 (192)
Q Consensus 113 ~~~~--~~~~DlV~~d~~ 128 (192)
+... -+.+|.++.+..
T Consensus 86 ~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 86 DFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 3321 136899998864
No 408
>PLN02827 Alcohol dehydrogenase-like
Probab=61.90 E-value=87 Score=26.95 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=52.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCC--chhHHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITN--ARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~--~~~~~~~~ 112 (192)
+++|.+||=.|+ |+....+.+..... ....|+++|.++... -.++..+ -|..+ ......+.
T Consensus 191 ~~~g~~VlV~G~--G~vG~~~iqlak~~----------G~~~vi~~~~~~~~~~~a~~lGa~~~-i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 191 VSKGSSVVIFGL--GTVGLSVAQGAKLR----------GASQIIGVDINPEKAEKAKTFGVTDF-INPNDLSEPIQQVIK 257 (378)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc----------CCCeEEEECCCHHHHHHHHHcCCcEE-EcccccchHHHHHHH
Confidence 478999998875 56665554432200 123688998775321 1133211 12221 12223333
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC-CEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg-G~~v~k 166 (192)
+...+ .+|+|+--. |. ...+..+.++|++| |.+++.
T Consensus 258 ~~~~~-g~d~vid~~-----G~------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 258 RMTGG-GADYSFECV-----GD------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred HHhCC-CCCEEEECC-----CC------------hHHHHHHHHhhccCCCEEEEE
Confidence 33333 799988531 21 12456678899998 999863
No 409
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=61.82 E-value=35 Score=28.45 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=13.6
Q ss_pred HHHHHHhcccCCEEEEE
Q 029488 150 LTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 150 l~~a~~~LkpgG~~v~k 166 (192)
+..+.+.|+++|+++..
T Consensus 245 ~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 245 LASALRVVRPGGTVVQV 261 (339)
T ss_pred HHHHHHHHhcCCEEEEE
Confidence 45677899999999864
No 410
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=61.81 E-value=8.9 Score=34.62 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=25.4
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
-|||+|+|||-.+..+.... .-.|+|+++-.
T Consensus 69 ~vLdigtGTGLLSmMAvrag--------------aD~vtA~Evfk 99 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--------------ADSVTACEVFK 99 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--------------CCeEEeehhhc
Confidence 58999999999998887774 35699998763
No 411
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=61.68 E-value=73 Score=26.99 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=51.0
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
++++.+||=.|+ |+....+.+.... ... .|++++.++... -.++..+ -+.........+.+
T Consensus 180 ~~~g~~vLI~g~--g~vG~a~i~lak~-----------~G~~~Vi~~~~~~~~~~~~~~~g~~~v-v~~~~~~~~~~l~~ 245 (363)
T cd08279 180 VRPGDTVAVIGC--GGVGLNAIQGARI-----------AGASRIIAVDPVPEKLELARRFGATHT-VNASEDDAVEAVRD 245 (363)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCcEEEEcCCHHHHHHHHHhCCeEE-eCCCCccHHHHHHH
Confidence 467888888865 5555443333210 134 488887665311 0122111 12222223333444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|+++.-... ...+..+.+.|+++|+++..
T Consensus 246 ~~~~~~vd~vld~~~~-----------------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 246 LTDGRGADYAFEAVGR-----------------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HcCCCCCCEEEEcCCC-----------------hHHHHHHHHHhhcCCeEEEE
Confidence 4455679999853210 02345677889999998763
No 412
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=61.44 E-value=14 Score=32.53 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=30.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++|+++||=|.+|--+...++.+. +.+|+|||++|.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~---------------P~~I~aVDlNp~ 68 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAG---------------PKRIHAVDLNPA 68 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcC---------------CceEEEEeCCHH
Confidence 478999999999888888886644 489999999995
No 413
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=61.12 E-value=27 Score=30.99 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=63.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------------CC-CC-ceEE
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PI-EG-VIQV 98 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------------~~-~~-v~~~ 98 (192)
+.+++.+.|||+|-|+....++...+ ...=+|+++.... .. ++ +..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-------------~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAG-------------CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhc-------------cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 47899999999999999999988864 4566788877531 01 22 5567
Q ss_pred ecccCCchhHHHHHhhcCCCcccEEEeCC-CCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 99 QGDITNARTAEVVIRHFDGCKADLVVCDG-APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 99 ~~Di~~~~~~~~~~~~~~~~~~DlV~~d~-~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+++..+.....++.. ..++|+++- .+ +.... +. +...+.-+++|=.++-
T Consensus 257 ~gsf~~~~~v~eI~~-----eatvi~vNN~~F--------dp~L~----lr-~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQT-----EATVIFVNNVAF--------DPELK----LR-SKEILQKCKDGTRIIS 306 (419)
T ss_pred ccccCCHHHHHHHhh-----cceEEEEecccC--------CHHHH----Hh-hHHHHhhCCCcceEec
Confidence 899998877666542 667777763 22 21111 11 2255667777777664
No 414
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=60.93 E-value=11 Score=27.85 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=17.5
Q ss_pred eEcCCCC--hHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 47 DLCAAPG--SWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 47 DlG~GpG--~~s~~l~~-~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
|+|+.-| ..+.+++. ... +.++|+++|.+|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~------------~~~~v~~~Ep~p~ 34 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG------------PGGRVHAFEPNPS 34 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--------------SEEEEE---HH
T ss_pred CcccCCChhHHHHHHHHHHcC------------CCCEEEEEECCHH
Confidence 8999999 55555442 343 5789999998873
No 415
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.88 E-value=40 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=31.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
.+||..|.=+|+|.=|.+...-.+.. ...+|+|||+++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~------------GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAA------------GASRIIGVDINPD 228 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhc------------CcccEEEEecCHH
Confidence 36789999999988888877666654 5789999999984
No 416
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=60.37 E-value=99 Score=26.46 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=61.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCceEEecccCCchhHHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
|+.|+=+| ---.+..++...+ .+.+|.-||+..- ..+.|+..+.-|++++-
T Consensus 153 gK~I~vvG--DDDLtsia~aLt~------------mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~pl---- 214 (354)
T COG1568 153 GKEIFVVG--DDDLTSIALALTG------------MPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPL---- 214 (354)
T ss_pred CCeEEEEc--CchhhHHHHHhcC------------CCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccC----
Confidence 67788888 3444444444443 5689999999862 23567888888998863
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC---CEEEEEecC
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG---GKFIAKIFR 169 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg---G~~v~k~~~ 169 (192)
++.+. +.||..+.|++-. . .-....+.-....||.- |+|.+....
T Consensus 215 -pe~~~-~kFDvfiTDPpeT------i------~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 215 -PEDLK-RKFDVFITDPPET------I------KALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred -hHHHH-hhCCeeecCchhh------H------HHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 33443 5999999997521 1 11123445555678776 888885433
No 417
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=59.45 E-value=28 Score=31.94 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=54.8
Q ss_pred CCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhcCCCcccEEEe
Q 029488 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (192)
Q Consensus 50 ~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~ 125 (192)
||-|.+++.+++.... ...+|+.+|.++.. ...+...+.||.++++...+ ..-+.+|.+++
T Consensus 423 ~G~G~~G~~la~~L~~-----------~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~----a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLA-----------AGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL----AHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh----cCccccCEEEE
Confidence 5566677777776531 24689999998742 12477889999999876433 22357887765
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecC
Q 029488 126 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 169 (192)
Q Consensus 126 d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~ 169 (192)
... +...+. .+..+.+...|+-+++..+-+
T Consensus 488 ~~~---------~~~~~~-----~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 488 TIP---------NGYEAG-----EIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred EcC---------ChHHHH-----HHHHHHHHHCCCCeEEEEECC
Confidence 321 111111 112233555788888877644
No 418
>PLN02740 Alcohol dehydrogenase-like
Probab=59.09 E-value=1.2e+02 Score=26.10 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=51.7
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCc--hhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNA--RTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~--~~~~~~ 111 (192)
+++|++||=.|+ |+....+.+.... ... .|+++|.++... --++..+ -|..+. .....+
T Consensus 196 ~~~g~~VlV~G~--G~vG~~a~q~ak~-----------~G~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~~~~~~~~~~~v 261 (381)
T PLN02740 196 VQAGSSVAIFGL--GAVGLAVAEGARA-----------RGASKIIGVDINPEKFEKGKEMGITDF-INPKDSDKPVHERI 261 (381)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------CCCCcEEEEcCChHHHHHHHHcCCcEE-EecccccchHHHHH
Confidence 478999999986 5665554443220 134 699999876321 1122211 122211 122223
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC-CEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg-G~~v~k 166 (192)
.+...+ .+|+|+--. |. ...+..+...+++| |.+++.
T Consensus 262 ~~~~~~-g~dvvid~~-----G~------------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 262 REMTGG-GVDYSFECA-----GN------------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HHHhCC-CCCEEEECC-----CC------------hHHHHHHHHhhhcCCCEEEEE
Confidence 333333 799988532 21 13456677889997 988763
No 419
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.10 E-value=1.1e+02 Score=25.67 Aligned_cols=98 Identities=20% Similarity=0.161 Sum_probs=52.1
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceE-EecccCCc-hhHHH
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQ-VQGDITNA-RTAEV 110 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~-~~~Di~~~-~~~~~ 110 (192)
..++|.+||=.|+ |+.+..+.+.... ... +|++++.++... --++.. +..+-.+. .....
T Consensus 174 ~~~~g~~vlI~g~--g~vG~~~~~lak~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~ 240 (361)
T cd08231 174 PVGAGDTVVVQGA--GPLGLYAVAAAKL-----------AGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAI 240 (361)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHH
Confidence 3457888888864 6777665544321 134 899998765311 012211 11111111 11123
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
+.+..++..+|+|+.-. |. ...+..+.+.|+++|.++.
T Consensus 241 i~~~~~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 241 VRDITGGRGADVVIEAS-----GH------------PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred HHHHhCCCCCcEEEECC-----CC------------hHHHHHHHHHhccCCEEEE
Confidence 44444556899998531 10 0234567789999999875
No 420
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=57.88 E-value=1.2e+02 Score=25.82 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=49.4
Q ss_pred CchhhHHhhHH--HH--HhHc---CcccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--
Q 029488 20 GWRARSAFKLL--QI--DEEF---NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-- 90 (192)
Q Consensus 20 ~~~~r~~~kl~--~i--~~~~---~~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-- 90 (192)
.+..++..||. || ...+ +.......||=+|+|||....+|.+..+.. +-.-+.+-+|..|..
T Consensus 30 k~~h~GQrKLLLsEIeFLs~~~~~~~~~~~~~VVYiGsApG~Hi~~L~~lf~~~---------~~~i~wvLiDp~~f~~~ 100 (294)
T PF01358_consen 30 KFPHWGQRKLLLSEIEFLSKLQRHGILDGPVTVVYIGSAPGTHIPFLFDLFPDL---------KVPIKWVLIDPRPFCIS 100 (294)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHTTTSTT-EEEEEES-SS-HHHHHHHHHHHHT---------T--EEEEEEESS---GG
T ss_pred cCcchhHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCcchHHHHHHHHHhc---------CCceEEEEECCcchhhh
Confidence 44556677764 33 1222 222233589999999999999999987510 001369999999853
Q ss_pred --CCCCceEEecccCCchhHHHHHhhcCCCcccEE-EeCC
Q 029488 91 --PIEGVIQVQGDITNARTAEVVIRHFDGCKADLV-VCDG 127 (192)
Q Consensus 91 --~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV-~~d~ 127 (192)
.+.+++.++. ..+.+...++.+... . +++ +||-
T Consensus 101 l~~l~~v~l~~~-fftee~~~~~~~~~~--~-~illISDI 136 (294)
T PF01358_consen 101 LEELSNVTLIQR-FFTEEYARRLRDKLN--L-KILLISDI 136 (294)
T ss_dssp GTT-TTEEEEES----HHHHHHHHHHHT--T-EEEEEE--
T ss_pred hcccCcEEeehh-hCCHHHHHHHHhhcC--C-CeEEEEec
Confidence 3456665554 445455545544322 2 555 7775
No 421
>PRK07023 short chain dehydrogenase; Provisional
Probab=57.87 E-value=70 Score=25.16 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=47.6
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCCchhHHHHHhh---
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRH--- 114 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~~~~~~~~~~~--- 114 (192)
+++|=.| |+|+++..+++.+-. ...+|+.++.++... -.++..+.+|+.+.+....+...
T Consensus 2 ~~vlItG-asggiG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 2 VRAIVTG-HSRGLGAALAEQLLQ-----------PGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred ceEEEec-CCcchHHHHHHHHHh-----------CCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 3577777 577888887777531 356888888765321 12567788999998766552221
Q ss_pred ---cCCCcccEEEeCCC
Q 029488 115 ---FDGCKADLVVCDGA 128 (192)
Q Consensus 115 ---~~~~~~DlV~~d~~ 128 (192)
......|.++.+..
T Consensus 70 ~~~~~~~~~~~~v~~ag 86 (243)
T PRK07023 70 AAFVDGASRVLLINNAG 86 (243)
T ss_pred HHhccCCCceEEEEcCc
Confidence 12346788888754
No 422
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=57.41 E-value=1.1e+02 Score=26.69 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=16.1
Q ss_pred HHHHHHHHhcccCCEEEEE
Q 029488 148 AGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 148 ~~l~~a~~~LkpgG~~v~k 166 (192)
.++..+.+++++||++++.
T Consensus 280 ~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 280 TVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred HHHHHHHHHhhCCCEEEEe
Confidence 3678889999999999874
No 423
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=56.96 E-value=1e+02 Score=24.78 Aligned_cols=98 Identities=16% Similarity=0.035 Sum_probs=52.6
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHHHh
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.+.++.+++-.|| +|++...+++.... ....|++++.++... . .++.... +..+......+..
T Consensus 136 ~~~~~~~vli~g~-~~~~g~~~~~~a~~-----------~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~i~~ 202 (323)
T cd08241 136 RLQPGETVLVLGA-AGGVGLAAVQLAKA-----------LGARVIAAASSEEKLALARALGADHVI-DYRDPDLRERVKA 202 (323)
T ss_pred CCCCCCEEEEEcC-CchHHHHHHHHHHH-----------hCCEEEEEeCCHHHHHHHHHcCCceee-ecCCccHHHHHHH
Confidence 3567899999998 45555554433220 246788888765210 0 1221111 1111223333444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|+++.... . ..+..+.+.++++|.++..
T Consensus 203 ~~~~~~~d~v~~~~g-----~-------------~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 203 LTGGRGVDVVYDPVG-----G-------------DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred HcCCCCcEEEEECcc-----H-------------HHHHHHHHhhccCCEEEEE
Confidence 445567999885321 0 1234466788999988753
No 424
>PRK08265 short chain dehydrogenase; Provisional
Probab=56.71 E-value=1e+02 Score=24.69 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=49.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCceEEecccCCchhHHHHHhh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~-~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++|=.|+ +|++...+++.+.. ...+|+.++.++.. . -.++.++++|+.+.+...++.+.
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVA-----------AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 567787774 56677766666431 35689999887631 1 12477889999998766555443
Q ss_pred cC--CCcccEEEeCCC
Q 029488 115 FD--GCKADLVVCDGA 128 (192)
Q Consensus 115 ~~--~~~~DlV~~d~~ 128 (192)
.. -..+|.++.+..
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 136899998864
No 425
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=56.58 E-value=1e+02 Score=25.69 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=52.2
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++.+||=.|+ |+....+.+..... ....|++++.++... -.++..+ -|.........+.+.
T Consensus 164 ~~~g~~vlI~g~--g~~g~~~~~~a~~~----------G~~~v~~~~~~~~~~~~~~~~g~~~~-v~~~~~~~~~~i~~~ 230 (345)
T cd08286 164 VKPGDTVAIVGA--GPVGLAALLTAQLY----------SPSKIIMVDLDDNRLEVAKKLGATHT-VNSAKGDAIEQVLEL 230 (345)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc----------CCCeEEEEcCCHHHHHHHHHhCCCce-eccccccHHHHHHHH
Confidence 467777776654 77776655443211 125788888765321 0122111 112222233334445
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.++..+|+|+.-. +. ...+..+.+.|+++|.++.
T Consensus 231 ~~~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 231 TDGRGVDVVIEAV-----GI------------PATFELCQELVAPGGHIAN 264 (345)
T ss_pred hCCCCCCEEEECC-----CC------------HHHHHHHHHhccCCcEEEE
Confidence 5556799998421 10 1234567789999999985
No 426
>PRK10537 voltage-gated potassium channel; Provisional
Probab=56.03 E-value=68 Score=28.32 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=57.0
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCceEEecccCCchhHHHHHhhcCCCcc
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~ 120 (192)
..++=+| .|..+..+++.... ....++.+|.+... ..++..++.||.++.+...+ ..-+..
T Consensus 241 ~HvII~G--~g~lg~~v~~~L~~-----------~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~----AgI~~A 303 (393)
T PRK10537 241 DHFIICG--HSPLAINTYLGLRQ-----------RGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKK----AGAARA 303 (393)
T ss_pred CeEEEEC--CChHHHHHHHHHHH-----------CCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHh----cCcccC
Confidence 3455554 45666666665421 23467777755322 12467789999999775433 222467
Q ss_pred cEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCCh
Q 029488 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDT 173 (192)
Q Consensus 121 DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~ 173 (192)
+.|++-.. +...+ .......+-+.|+.+++..+.+.++.
T Consensus 304 ~aVI~~t~---------dD~~N-----l~ivL~ar~l~p~~kIIa~v~~~~~~ 342 (393)
T PRK10537 304 RAILALRD---------NDADN-----AFVVLAAKEMSSDVKTVAAVNDSKNL 342 (393)
T ss_pred CEEEEcCC---------ChHHH-----HHHHHHHHHhCCCCcEEEEECCHHHH
Confidence 77776431 11111 12223456788999999877654433
No 427
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=56.01 E-value=1.2e+02 Score=25.66 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=52.4
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC----CCCceEEecccCCchhHHHHH
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~ 112 (192)
.++++.+||=.| +|+....+.+.... .... |++++.++... -.++..+. |..+......+.
T Consensus 184 ~~~~g~~VlI~g--~g~vG~~~~~lak~-----------~G~~~vi~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~ 249 (367)
T cd08263 184 DVRPGETVAVIG--VGGVGSSAIQLAKA-----------FGASPIIAVDVRDEKLAKAKELGATHTV-NAAKEDAVAAIR 249 (367)
T ss_pred cCCCCCEEEEEC--CcHHHHHHHHHHHH-----------cCCCeEEEEeCCHHHHHHHHHhCCceEe-cCCcccHHHHHH
Confidence 346788888664 56666655444321 1244 88887665221 01222111 111222233344
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...++..+|+|+.-.. + . ..+..+.+.|+++|+++..
T Consensus 250 ~~~~~~~~d~vld~vg----~-~------------~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 250 EITGGRGVDVVVEALG----K-P------------ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred HHhCCCCCCEEEEeCC----C-H------------HHHHHHHHHHhcCCEEEEE
Confidence 4455668999995321 0 0 1345677899999998864
No 428
>PRK06182 short chain dehydrogenase; Validated
Probab=55.95 E-value=1.1e+02 Score=24.68 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhc--
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF-- 115 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~-- 115 (192)
++++|=.| |+|+.+..+++.... .+.+|++++.++.. ...++.++.+|+++.+....+.+..
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAA-----------QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 56777667 567788887776531 35789999877531 1135778899999987765555432
Q ss_pred CCCcccEEEeCCCC
Q 029488 116 DGCKADLVVCDGAP 129 (192)
Q Consensus 116 ~~~~~DlV~~d~~~ 129 (192)
....+|.++.+...
T Consensus 71 ~~~~id~li~~ag~ 84 (273)
T PRK06182 71 EEGRIDVLVNNAGY 84 (273)
T ss_pred hcCCCCEEEECCCc
Confidence 12478999988653
No 429
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=55.90 E-value=74 Score=29.19 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCCeEEeEcCCCChHHHH-HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCC-----------
Q 029488 41 GVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITN----------- 104 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~-l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~----------- 104 (192)
++.+|+=+|+|+=|.+.. ++... .+.|+++|.++.. ..-+..++.-|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--------------GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--------------GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceee
Confidence 578999999998777654 44444 3679999998732 11233443333211
Q ss_pred --chhHHHHHhhcC--CCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEE
Q 029488 105 --ARTAEVVIRHFD--GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 164 (192)
Q Consensus 105 --~~~~~~~~~~~~--~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v 164 (192)
.+......+.++ ...+|+|+.-...+ |...+ . -..+++.+.+|||+.++
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~Talip--G~~aP-~--------Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIP--GKPAP-K--------LITEEMVDSMKAGSVIV 281 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccC--CCCCC-e--------eehHHHHhhCCCCCEEE
Confidence 111111111122 24799998765322 11111 0 12345678999998876
No 430
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=55.81 E-value=1.1e+02 Score=24.64 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=51.1
Q ss_pred CCCeEEeEcCC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchh
Q 029488 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (192)
Q Consensus 41 ~g~~vLDlG~G-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~ 107 (192)
.++.+|=.|++ ++++...+++.+.. ...+|+.++.+... ...++..++.|+.+.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 73 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-----------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQ 73 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHH
Confidence 46789999985 78999888887641 35677666433210 11235577899999877
Q ss_pred HHHHHhhcC--CCcccEEEeCCC
Q 029488 108 AEVVIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 108 ~~~~~~~~~--~~~~DlV~~d~~ 128 (192)
...+.+... -+.+|+++.+..
T Consensus 74 v~~~~~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 74 IEETFETIKQKWGKLDILVHCLA 96 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEEccc
Confidence 666555432 147999998864
No 431
>PRK07576 short chain dehydrogenase; Provisional
Probab=55.80 E-value=1.1e+02 Score=24.65 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=49.2
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+++++|=.| |+|+.+..+++.... ....|+.++.++.. ...++.++..|+++.+....
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 75 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR-----------AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEA 75 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHH
Confidence 467888888 577777766665431 35789999977521 01245667899998776555
Q ss_pred HHhhc--CCCcccEEEeCCC
Q 029488 111 VIRHF--DGCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~--~~~~~DlV~~d~~ 128 (192)
+.+.. ....+|.++++..
T Consensus 76 ~~~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 76 AFAQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 54432 1246899998753
No 432
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=55.79 E-value=46 Score=27.70 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHhcccCCEEEEE
Q 029488 149 GLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 149 ~l~~a~~~LkpgG~~v~k 166 (192)
.+..+.+.|+++|.+++.
T Consensus 213 ~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 213 LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHhhhcCcEEEEE
Confidence 456788999999999864
No 433
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=55.42 E-value=1.2e+02 Score=25.08 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=39.8
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCceEEecccCCchhHHHHHhhcCCCcccEE
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~DlV 123 (192)
+||=.| |+|-.+..+.+.+- ..++|+++|... ....+|+++.+...++ +.+.++|.|
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~------------~~g~V~~~~~~~-------~~~~~Dl~d~~~~~~~---~~~~~~D~V 58 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALA------------PLGNLIALDVHS-------TDYCGDFSNPEGVAET---VRKIRPDVI 58 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhh------------ccCCEEEecccc-------ccccCCCCCHHHHHHH---HHhcCCCEE
Confidence 455555 67888888887653 234799998653 1346799987654443 333367888
Q ss_pred EeCCC
Q 029488 124 VCDGA 128 (192)
Q Consensus 124 ~~d~~ 128 (192)
+.-.+
T Consensus 59 ih~Aa 63 (299)
T PRK09987 59 VNAAA 63 (299)
T ss_pred EECCc
Confidence 86554
No 434
>PRK12744 short chain dehydrogenase; Provisional
Probab=55.15 E-value=1.1e+02 Score=24.40 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=62.2
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--------------CCCceEEecccCCchh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--------------IEGVIQVQGDITNART 107 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--------------~~~v~~~~~Di~~~~~ 107 (192)
++++|=.| |+|++...+++.+.. ...+|+.++.++... -.++.++..|+++.+.
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~-----------~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAA-----------QGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAA 75 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHH-----------CCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHH
Confidence 56888777 466777777776531 245666665443110 1246678999999877
Q ss_pred HHHHHhhcC--CCcccEEEeCCCCCCC---CCccccHHHH---HHH--HHHHHHHHHHhcccCCEEEE
Q 029488 108 AEVVIRHFD--GCKADLVVCDGAPDVT---GLHDMDEFVQ---SQL--ILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 108 ~~~~~~~~~--~~~~DlV~~d~~~~~~---g~~~~~~~~~---~~l--~~~~l~~a~~~LkpgG~~v~ 165 (192)
..++..... .+.+|.++.+...... .....+++.. ... ....++.+.+.++++|.++.
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 655544321 1478999988643111 1111222221 111 12335666677777887765
No 435
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.98 E-value=1.1e+02 Score=24.58 Aligned_cols=77 Identities=13% Similarity=-0.025 Sum_probs=47.8
Q ss_pred CCCeEEeEcCCCC-hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG-~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-----~----~~~~v~~~~~Di~~~~~~~~ 110 (192)
.|+.+|=-|++.| |....+++.+.. ...+|+..+.+.. . .......++.|+++.+....
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~-----------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~ 75 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKK-----------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISN 75 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHH-----------cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHH
Confidence 3677888888875 676666655421 2467887776531 0 11223346789999877666
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -+.+|+++.+..
T Consensus 76 ~~~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 76 LFDDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHHHHcCCccEEEEccc
Confidence 655431 147999998764
No 436
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=53.93 E-value=60 Score=28.03 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=49.4
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCCchhHHHHHhh
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++|++||=.|+ |+....+.+.... ....|++++.++... --++.... |..+. ..+.+.
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~-----------~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~---~~v~~~ 239 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKA-----------FGLRVTVISRSSEKEREAIDRLGADSFL-VTTDS---QKMKEA 239 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHH-----------cCCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCH---HHHHHh
Confidence 57889998876 5565554433220 135789988764221 11332211 12221 223332
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
. + .+|+|+--. |. ...+..+.+.|++||+++..
T Consensus 240 ~-~-~~D~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 240 V-G-TMDFIIDTV-----SA------------EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred h-C-CCcEEEECC-----Cc------------HHHHHHHHHhhcCCCEEEEE
Confidence 2 2 588888421 21 12456778899999999864
No 437
>PRK06500 short chain dehydrogenase; Provisional
Probab=53.75 E-value=1.1e+02 Score=24.02 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC-CCceEEecccCCchhHHHHHhh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~-~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++|=.|+ +|+....+++.+.. ...+|+.++.++.. .+ .++.++..|+.+.+....+.+.
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLA-----------EGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 556666665 57777776665431 35689988876421 01 2456778899887655444433
Q ss_pred cC--CCcccEEEeCCC
Q 029488 115 FD--GCKADLVVCDGA 128 (192)
Q Consensus 115 ~~--~~~~DlV~~d~~ 128 (192)
.. ...+|.|+.+..
T Consensus 74 ~~~~~~~id~vi~~ag 89 (249)
T PRK06500 74 LAEAFGRLDAVFINAG 89 (249)
T ss_pred HHHHhCCCCEEEECCC
Confidence 21 146899888764
No 438
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=53.62 E-value=1.4e+02 Score=25.26 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=61.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCceE--EecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQ--VQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~----------~~~~~v~~--~~~Di~~~~~~ 108 (192)
-+...+|||+|+-..+..+.+.... .+-..+.+.+|++.. ...+++.. +.+|.... .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~---------~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~--L 146 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAH---------RGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELA--L 146 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhh---------cCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHH--H
Confidence 4789999999999999988887641 112468999999973 12455432 34444321 1
Q ss_pred HHHHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 109 ~~~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
. .++ +.-.-+++-.. +..|..++++ +...|......|+||-+|++-+
T Consensus 147 a----~~~-~~~~Rl~~flG-StlGN~tp~e------~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 147 A----ELP-RGGRRLFVFLG-STLGNLTPGE------CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred h----ccc-CCCeEEEEEec-ccccCCChHH------HHHHHHHHHhcCCCcceEEEec
Confidence 1 123 23333333321 1234444443 2345777889999999998743
No 439
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=53.59 E-value=97 Score=24.73 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCceEEecccCCchhHHHHHhhcC--CC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-~~~v~~~~~Di~~~~~~~~~~~~~~--~~ 118 (192)
++++|=.|+ +|++...+++.+.. ...+|+.++.++... ..++..+..|+++.+....+.+... -.
T Consensus 9 ~k~vlItG~-s~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 9 GKIIIVTGG-SSGIGLAIVKELLA-----------NGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567776664 46666666655421 357899999876432 2356778899999876655544321 14
Q ss_pred cccEEEeCCC
Q 029488 119 KADLVVCDGA 128 (192)
Q Consensus 119 ~~DlV~~d~~ 128 (192)
.+|.++.+..
T Consensus 77 ~id~li~~Ag 86 (266)
T PRK06171 77 RIDGLVNNAG 86 (266)
T ss_pred CCCEEEECCc
Confidence 7899998764
No 440
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=53.58 E-value=31 Score=29.12 Aligned_cols=94 Identities=15% Similarity=0.079 Sum_probs=50.1
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhc
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
.+|++||=.|| |+....+.+..... ....|+++|.++... --++..+ -|..+.. ..++.+.
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~----------G~~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~-~~~~~~~- 232 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTL----------GAAEIVCADVSPRSLSLAREMGADKL-VNPQNDD-LDHYKAE- 232 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc----------CCcEEEEEeCCHHHHHHHHHcCCcEE-ecCCccc-HHHHhcc-
Confidence 46889998886 56665544432200 134799999886321 0133221 1222211 1112111
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
...+|+|+--. |. ...+..+.+.|++||.+++.
T Consensus 233 -~g~~D~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 233 -KGYFDVSFEVS-----GH------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -CCCCCEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEE
Confidence 23589988532 21 12456678899999999874
No 441
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=53.07 E-value=38 Score=31.69 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=57.5
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCceEEecccCCchhHHHHHhhcCCC
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----~~~~v~~~~~Di~~~~~~~~~~~~~~~~ 118 (192)
.+|+=+|+|. +++.+++.... ....++.+|.++.. ...+...+.||.++++...+ ..-+
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~----agi~ 463 (621)
T PRK03562 401 PRVIIAGFGR--FGQIVGRLLLS-----------SGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLES----AGAA 463 (621)
T ss_pred CcEEEEecCh--HHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHh----cCCC
Confidence 5666666654 66666665431 24689999999852 22577789999999875432 2234
Q ss_pred cccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC
Q 029488 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 172 (192)
Q Consensus 119 ~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~ 172 (192)
..|.+++-.. +...+. .++. ..+.+-|+-.+++...+..+
T Consensus 464 ~A~~vvv~~~---------d~~~n~----~i~~-~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 464 KAEVLINAID---------DPQTSL----QLVE-LVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred cCCEEEEEeC---------CHHHHH----HHHH-HHHHhCCCCeEEEEECCHHH
Confidence 7888876421 112221 1222 23445677777776655433
No 442
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=53.01 E-value=58 Score=26.15 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=22.8
Q ss_pred ccCCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCC
Q 029488 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQP 88 (192)
Q Consensus 39 l~~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~ 88 (192)
++++.++|=.|+|+ |..+..+++..+ .+ |++++.++
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g--------------~~~vi~~~~~~ 132 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG--------------AREVVGVDPDA 132 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CCcEEEECCCH
Confidence 46788888887643 333344555543 45 99998765
No 443
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=53.00 E-value=17 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=33.5
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~ 89 (192)
++.+.++.|+||-=+-...+|.+.. +...+++.|+++-
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~-------------~~~~~va~eV~~g 51 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNN-------------PASTAVAGEVVPG 51 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcC-------------CcceEEEeecccC
Confidence 4667789999999999999999987 4789999999983
No 444
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=52.91 E-value=23 Score=35.84 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=42.5
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCC--hHHHHHHHHccCCeeeE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQVNKMLVKTPV 189 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~--~~~l~~~l~~~f~~v~~ 189 (192)
.++-+.|.+|-||.--...|.. |-..+.+....++..|+.+..+||.+++|+--+.+ ...+...+...|+++.+
T Consensus 564 p~pTGtf~fVYSDVDQV~dg~~--dl~As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~i 639 (1289)
T PF06016_consen 564 PFPTGTFTFVYSDVDQVQDGGD--DLVASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHI 639 (1289)
T ss_dssp --S---EEEEEEE-----SSTT--THHHHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEE
T ss_pred CCCCCceEEEEecchhhccCCc--chhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeE
Confidence 4567899999999742222222 22334555667899999999999999999843333 34555555556666554
No 445
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.91 E-value=42 Score=28.94 Aligned_cols=56 Identities=9% Similarity=-0.058 Sum_probs=37.9
Q ss_pred CcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC
Q 029488 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185 (192)
Q Consensus 118 ~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~ 185 (192)
..+|.|+.-.+.. +....-+|..+...|+|||.+++-=-.......+.+.+..++.
T Consensus 75 ~~~d~~~~~~pk~------------k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~~ 130 (342)
T PRK09489 75 ADCDTLIYYWPKN------------KQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYAP 130 (342)
T ss_pred CCCCEEEEECCCC------------HHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhcC
Confidence 4789888765422 2233456788899999999999854444555666667776653
No 446
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=52.90 E-value=73 Score=26.48 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=53.3
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCC-CeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-PLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~-~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
++++.+||=.| .|+.+..+.+.... .. ..|++++.++... -.++..+. .........+.+
T Consensus 165 ~~~~~~vlI~g--~g~vg~~~~~~a~~-----------~g~~~v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~l~~ 229 (344)
T cd08284 165 VRPGDTVAVIG--CGPVGLCAVLSAQV-----------LGAARVFAVDPVPERLERAAALGAEPIN--FEDAEPVERVRE 229 (344)
T ss_pred CccCCEEEEEC--CcHHHHHHHHHHHH-----------cCCceEEEEcCCHHHHHHHHHhCCeEEe--cCCcCHHHHHHH
Confidence 35677887775 47777666554331 13 3788886654211 01322222 222223344555
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|+|+.-.. . ...+..+.+.|+++|+++..
T Consensus 230 ~~~~~~~dvvid~~~-----~------------~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 230 ATEGRGADVVLEAVG-----G------------AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred HhCCCCCCEEEECCC-----C------------HHHHHHHHHhcccCCEEEEE
Confidence 555568999985311 0 02345677889999998763
No 447
>PRK05884 short chain dehydrogenase; Provisional
Probab=52.60 E-value=1.1e+02 Score=23.94 Aligned_cols=72 Identities=14% Similarity=0.019 Sum_probs=45.4
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCceEEecccCCchhHHHHHhhcCCC
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-----~~~v~~~~~Di~~~~~~~~~~~~~~~~ 118 (192)
++|=.|++ |+....+++.+.. ...+|+.++.++... ..++..+..|+.+.+...++.+.+..
T Consensus 2 ~vlItGas-~giG~~ia~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~- 68 (223)
T PRK05884 2 EVLVTGGD-TDLGRTIAEGFRN-----------DGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPH- 68 (223)
T ss_pred eEEEEeCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhh-
Confidence 45555544 5577666665531 357899998775311 11466788999998776666554432
Q ss_pred cccEEEeCCC
Q 029488 119 KADLVVCDGA 128 (192)
Q Consensus 119 ~~DlV~~d~~ 128 (192)
.+|.++.+..
T Consensus 69 ~id~lv~~ag 78 (223)
T PRK05884 69 HLDTIVNVPA 78 (223)
T ss_pred cCcEEEECCC
Confidence 6899888753
No 448
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.24 E-value=83 Score=24.62 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=49.9
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
+++++|=.|+ .|+....+++.... ....|+.++.++.. .-.++.++..|+++.+...+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQ-----------KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEA 71 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 3678888885 57777777765531 24689999987521 01246678899998776655
Q ss_pred HHhhcCC--CcccEEEeCCC
Q 029488 111 VIRHFDG--CKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~~--~~~DlV~~d~~ 128 (192)
+.+.... ..+|.|+....
T Consensus 72 ~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 72 TFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 5544321 47899998764
No 449
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=52.23 E-value=1.4e+02 Score=25.00 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=51.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++.+||=.| .|+....+.+..... ....|+++|.++... -.++..+ -+.........+.+.
T Consensus 172 ~~~g~~vlI~g--~g~vG~~~~~~a~~~----------G~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~ 238 (350)
T cd08256 172 IKFDDVVVLAG--AGPLGLGMIGAARLK----------NPKKLIVLDLKDERLALARKFGADVV-LNPPEVDVVEKIKEL 238 (350)
T ss_pred CCCCCEEEEEC--CCHHHHHHHHHHHHc----------CCcEEEEEcCCHHHHHHHHHcCCcEE-ecCCCcCHHHHHHHH
Confidence 46777776644 477765544432200 134688888775321 1122221 122222333445454
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.++..+|+++.-. |. ...+..+.+.|+++|.++..
T Consensus 239 ~~~~~vdvvld~~-----g~------------~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 239 TGGYGCDIYIEAT-----GH------------PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred hCCCCCCEEEECC-----CC------------hHHHHHHHHHhhcCCEEEEE
Confidence 5556799998531 10 01345578899999998763
No 450
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=52.23 E-value=1.1e+02 Score=23.93 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=48.0
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCceEEecccCCchhHHHHHhhcC--CC
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~-~~~v~~~~~Di~~~~~~~~~~~~~~--~~ 118 (192)
++++|=.|++ |+++..+++.... ...+|++++.++... -.++.++..|+++.+....+.+... ..
T Consensus 8 ~k~vlItGas-~~iG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 8 GKTVWVTGAA-QGIGYAVALAFVE-----------AGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5667766654 5666666665421 357899998876221 2357778999999876655544321 14
Q ss_pred cccEEEeCCC
Q 029488 119 KADLVVCDGA 128 (192)
Q Consensus 119 ~~DlV~~d~~ 128 (192)
++|+|+....
T Consensus 76 ~id~vi~~ag 85 (252)
T PRK08220 76 PLDVLVNAAG 85 (252)
T ss_pred CCCEEEECCC
Confidence 6899998864
No 451
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=51.79 E-value=1.3e+02 Score=24.48 Aligned_cols=97 Identities=14% Similarity=-0.017 Sum_probs=51.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++.++|=.|++. ++...+++.... ...+|+.++.++... . .+... ..|..+......+...
T Consensus 164 ~~~~~~vlI~g~~~-~iG~~~~~~~~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (342)
T cd08266 164 LRPGETVLVHGAGS-GVGSAAIQIAKL-----------FGATVIATAGSEDKLERAKELGADY-VIDYRKEDFVREVREL 230 (342)
T ss_pred CCCCCEEEEECCCc-hHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHcCCCe-EEecCChHHHHHHHHH
Confidence 46788898888753 333333332210 246788887665210 0 11111 1233333333444444
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..+..+|+++.... . ..+..+.+.|+++|.++..
T Consensus 231 ~~~~~~d~~i~~~g-----~-------------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 231 TGKRGVDVVVEHVG-----A-------------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred hCCCCCcEEEECCc-----H-------------HHHHHHHHHhhcCCEEEEE
Confidence 45567999986432 0 1234566789999998864
No 452
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=51.47 E-value=59 Score=27.78 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=53.7
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
+++|.+||=.|+ |+....+.+..... ....|+++|.++... --++..+ |..+......+.+.
T Consensus 174 ~~~g~~vlI~g~--g~vg~~~~~~a~~~----------G~~~vi~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~i~~~ 239 (375)
T cd08282 174 VQPGDTVAVFGA--GPVGLMAAYSAILR----------GASRVYVVDHVPERLDLAESIGAIPI--DFSDGDPVEQILGL 239 (375)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc----------CCCEEEEECCCHHHHHHHHHcCCeEe--ccCcccHHHHHHHh
Confidence 467888877655 56665554443210 123788888765321 0132222 33333333444444
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+ ..+|+|+.-..... ...+.+. .....+..+.+.|+++|.++.
T Consensus 240 ~~-~~~d~v~d~~g~~~-~~~~~~~-----~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 240 EP-GGVDRAVDCVGYEA-RDRGGEA-----QPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred hC-CCCCEEEECCCCcc-ccccccc-----chHHHHHHHHHHhhcCcEEEE
Confidence 44 57898886322110 0011110 001346677899999999864
No 453
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=51.42 E-value=1.4e+02 Score=24.74 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=54.8
Q ss_pred ccCCCeEEeEcCCC--ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHHH
Q 029488 39 FEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 39 l~~g~~vLDlG~Gp--G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~~ 112 (192)
++++.+||=.|+++ |..+..+++.. ..+|+++..++... . .++..+ -+..+......+.
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~--------------g~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~ 227 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAM--------------GLRVIAIDVGDEKLELAKELGADAF-VDFKKSDDVEAVK 227 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC--------------CCeEEEEeCCHHHHHHHHHcCCcEE-EcCCCccHHHHHH
Confidence 46788998888753 44445555554 35888887775211 0 122111 1122223334455
Q ss_pred hhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 113 RHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 113 ~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+..++..+|+|+.+... ...+..+.+.|+++|+++..
T Consensus 228 ~~~~~~~vd~vl~~~~~-----------------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 228 ELTGGGGAHAVVVTAVS-----------------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred HHhcCCCCCEEEEcCCc-----------------hHHHHHHHHHhhcCCEEEEe
Confidence 55556689999953210 12345677889999999864
No 454
>PRK06128 oxidoreductase; Provisional
Probab=51.35 E-value=1.4e+02 Score=24.60 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=62.8
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchhHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~~~ 109 (192)
++++|=.| |+|++...+++.+.. ...+|+.+..+... .-.++.++.+|+++.+...
T Consensus 55 ~k~vlITG-as~gIG~~~a~~l~~-----------~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~ 122 (300)
T PRK06128 55 GRKALITG-ADSGIGRATAIAFAR-----------EGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCR 122 (300)
T ss_pred CCEEEEec-CCCcHHHHHHHHHHH-----------cCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 57888888 467777776666531 35677766554311 0123567789999987655
Q ss_pred HHHhhcC--CCcccEEEeCCCCCC-CC-Ccc--ccHHH---HHHH--HHHHHHHHHHhcccCCEEEEE
Q 029488 110 VVIRHFD--GCKADLVVCDGAPDV-TG-LHD--MDEFV---QSQL--ILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 110 ~~~~~~~--~~~~DlV~~d~~~~~-~g-~~~--~~~~~---~~~l--~~~~l~~a~~~LkpgG~~v~k 166 (192)
++.+... -+.+|.++.+..... .. ..+ .+++. ...+ ...+++.+...++++|.++..
T Consensus 123 ~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 123 QLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 5544321 136899998875321 11 111 11111 1111 123456666777888887763
No 455
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=51.15 E-value=1.2e+02 Score=25.08 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=51.8
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~-V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
+++|.+||=.|+ |+.+..+++.... .... |++++.++... -.++..+ -+-.+......+.+
T Consensus 163 ~~~g~~VlV~g~--g~vg~~~~~la~~-----------~g~~~v~~~~~s~~~~~~~~~~g~~~~-~~~~~~~~~~~i~~ 228 (343)
T cd08235 163 IKPGDTVLVIGA--GPIGLLHAMLAKA-----------SGARKVIVSDLNEFRLEFAKKLGADYT-IDAAEEDLVEKVRE 228 (343)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCcEEEEECCCHHHHHHHHHhCCcEE-ecCCccCHHHHHHH
Confidence 578888888864 5666555443321 2345 77877665210 0122111 11122233334444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
..++..+|+|+.... + ...+..+.+.|+++|+++..
T Consensus 229 ~~~~~~vd~vld~~~----~-------------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 229 LTDGRGADVVIVATG----S-------------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HhCCcCCCEEEECCC----C-------------hHHHHHHHHHhhcCCEEEEE
Confidence 455567999985321 0 02345567889999998864
No 456
>PRK08251 short chain dehydrogenase; Provisional
Probab=50.72 E-value=78 Score=24.88 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=49.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C--CCCceEEecccCCchhHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P--IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~--~~~v~~~~~Di~~~~~~~ 109 (192)
++++|=.| |+|+++..+++++.. ...+|+.++.++.. . -.++.+...|+++.+...
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 69 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAA-----------KGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVF 69 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHH
Confidence 45677777 578888888877641 24688888877521 0 124677889999987655
Q ss_pred HHHhhcC--CCcccEEEeCCC
Q 029488 110 VVIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 110 ~~~~~~~--~~~~DlV~~d~~ 128 (192)
.+.+... -..+|.|+.+..
T Consensus 70 ~~~~~~~~~~~~id~vi~~ag 90 (248)
T PRK08251 70 EVFAEFRDELGGLDRVIVNAG 90 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 5444321 246899998864
No 457
>PRK05693 short chain dehydrogenase; Provisional
Probab=50.69 E-value=1.3e+02 Score=24.16 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=48.2
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhc--CC
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF--DG 117 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~--~~ 117 (192)
++|=.| |+|+++..+++.... .+.+|++++.++... ..++.++..|+.+.+...++.+.. ..
T Consensus 3 ~vlItG-asggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 70 (274)
T PRK05693 3 VVLITG-CSSGIGRALADAFKA-----------AGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEH 70 (274)
T ss_pred EEEEec-CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 455555 567888777776531 357899998775311 135677889999877665554432 22
Q ss_pred CcccEEEeCCCC
Q 029488 118 CKADLVVCDGAP 129 (192)
Q Consensus 118 ~~~DlV~~d~~~ 129 (192)
..+|.|+.+...
T Consensus 71 ~~id~vi~~ag~ 82 (274)
T PRK05693 71 GGLDVLINNAGY 82 (274)
T ss_pred CCCCEEEECCCC
Confidence 478999988653
No 458
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.63 E-value=1.4e+02 Score=24.41 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=51.3
Q ss_pred CCCeEEeEcCCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~Gp-G~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~---------~~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++.+|=.|++. +|+...+++++.. ...+|+.++.+.. ....+-..++.|+++.+....
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~-----------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE-----------QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 367888899874 7888888876541 3568888776631 011111467899999877666
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -+.+|+++.+..
T Consensus 73 ~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHHHHHcCCCCEEEECCc
Confidence 655432 257999999864
No 459
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=50.60 E-value=15 Score=31.57 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=37.9
Q ss_pred cCCCeEEeEcCCCChHHHHHHHHhCCC--CCCCCC-CCCCCCCeEEEEeCCCCC------C----------CCCc--eEE
Q 029488 40 EGVKRVVDLCAAPGSWSQVLSRKLYLP--AKLSPD-SREGDLPLIVAIDLQPMA------P----------IEGV--IQV 98 (192)
Q Consensus 40 ~~g~~vLDlG~GpG~~s~~l~~~~~~~--~~~~~~-~~~~~~~~V~gvD~~~~~------~----------~~~v--~~~ 98 (192)
....+|+|+||+.|.-|..+....=.. .+.... ....|.-+|+-.|+=.-. . .+++ ..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 345799999999999885543321000 000000 012244577888865421 0 1121 223
Q ss_pred ecccCCchhHHHHHhhcCCCcccEEEeCCCCC
Q 029488 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (192)
Q Consensus 99 ~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~ 130 (192)
.|...+ +.+|.+++|+++|.-+.|
T Consensus 95 pgSFy~--------rLfP~~Svh~~~Ss~alH 118 (334)
T PF03492_consen 95 PGSFYG--------RLFPSNSVHFGHSSYALH 118 (334)
T ss_dssp ES-TTS----------S-TT-EEEEEEES-TT
T ss_pred Cchhhh--------ccCCCCceEEEEEechhh
Confidence 455555 357889999999986543
No 460
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=49.24 E-value=1.1e+02 Score=25.46 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=49.8
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---CCCceEEecccCCchhHHHHHhhc
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~---~~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
+++|.+||=.|+ +|+.+..+++.... ..+.|++++.+.... -.++..+. +..+ ....+ ....
T Consensus 175 ~~~g~~vlI~g~-~g~ig~~~~~~a~~-----------~g~~vi~~~~~~~~~~~~~~g~~~~~-~~~~-~~~~~-~~~~ 239 (350)
T cd08274 175 VGAGETVLVTGA-SGGVGSALVQLAKR-----------RGAIVIAVAGAAKEEAVRALGADTVI-LRDA-PLLAD-AKAL 239 (350)
T ss_pred CCCCCEEEEEcC-CcHHHHHHHHHHHh-----------cCCEEEEEeCchhhHHHHhcCCeEEE-eCCC-ccHHH-HHhh
Confidence 468899998887 45555554433221 246788887543110 01222211 1111 11111 2233
Q ss_pred CCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 116 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.+..+|+|+.-. + ...+..+.+.|+++|.++.
T Consensus 240 ~~~~~d~vi~~~-----g-------------~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 240 GGEPVDVVADVV-----G-------------GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred CCCCCcEEEecC-----C-------------HHHHHHHHHHhccCCEEEE
Confidence 456799998531 1 0134567889999999885
No 461
>PRK08267 short chain dehydrogenase; Provisional
Probab=49.16 E-value=1.3e+02 Score=23.81 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=47.7
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--CCceEEecccCCchhHHHHHhhc
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIRHF 115 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~--~~v~~~~~Di~~~~~~~~~~~~~ 115 (192)
++|=.|++ |+.+..+++.+.. ...+|+.++.++.. .+ .++.++++|+++.+...++....
T Consensus 3 ~vlItGas-g~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAA-----------EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 46666654 6777776665431 35689999877531 11 25778899999987655544432
Q ss_pred C---CCcccEEEeCCCC
Q 029488 116 D---GCKADLVVCDGAP 129 (192)
Q Consensus 116 ~---~~~~DlV~~d~~~ 129 (192)
. ...+|.|+.+...
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 1 3478999988643
No 462
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.02 E-value=1.4e+02 Score=24.08 Aligned_cols=93 Identities=16% Similarity=-0.015 Sum_probs=50.9
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
+++|.+||=.|+ +|+.+..+.+.... .+..|+++..++... -.++..+..+ .......+.+.
T Consensus 140 ~~~g~~vlV~ga-~g~~g~~~~~~a~~-----------~g~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~ 205 (320)
T cd08243 140 LQPGDTLLIRGG-TSSVGLAALKLAKA-----------LGATVTATTRSPERAALLKELGADEVVID--DGAIAEQLRAA 205 (320)
T ss_pred CCCCCEEEEEcC-CChHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHhcCCcEEEec--CccHHHHHHHh
Confidence 567888887776 45555444333221 246788887765311 1133222212 21223334333
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
++++|+|+.... ...+..+.+.|+++|.++.
T Consensus 206 --~~~~d~vl~~~~------------------~~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 206 --PGGFDKVLELVG------------------TATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred --CCCceEEEECCC------------------hHHHHHHHHHhccCCEEEE
Confidence 568999985321 0234556789999999875
No 463
>PRK07985 oxidoreductase; Provisional
Probab=48.63 E-value=1.5e+02 Score=24.35 Aligned_cols=113 Identities=10% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~~ 108 (192)
.++++|=.|+ +|+++..+++.+.. ...+|+.++.+... .-.++.++..|+++.+..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~-----------~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 115 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAR-----------EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFA 115 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHH
Confidence 3578998885 57777776666531 35778877654211 012456788999998765
Q ss_pred HHHHhhc--CCCcccEEEeCCCCCC--CCCcc--ccHHH---HHHH--HHHHHHHHHHhcccCCEEEE
Q 029488 109 EVVIRHF--DGCKADLVVCDGAPDV--TGLHD--MDEFV---QSQL--ILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 109 ~~~~~~~--~~~~~DlV~~d~~~~~--~g~~~--~~~~~---~~~l--~~~~l~~a~~~LkpgG~~v~ 165 (192)
..+.+.. .-+.+|.++.+..... ..... .+++. ...+ ...++..+...++.+|.++.
T Consensus 116 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~ 183 (294)
T PRK07985 116 RSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEE
Confidence 5544332 1246899888754211 01111 11111 1111 12345556666777888776
No 464
>PLN02240 UDP-glucose 4-epimerase
Probab=48.56 E-value=1.6e+02 Score=24.56 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=46.9
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------CCCCceEEecccCCchh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITNART 107 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------------~~~~v~~~~~Di~~~~~ 107 (192)
+++||=.| |+|..+..+++.+-. ...+|+++|..... ...++.++.+|+++...
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~-----------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 72 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLL-----------AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEA 72 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHH
Confidence 56788777 778888877776531 24689999854210 01357788999998765
Q ss_pred HHHHHhhcCCCcccEEEeCCC
Q 029488 108 AEVVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 108 ~~~~~~~~~~~~~DlV~~d~~ 128 (192)
...+.. ...+|.|+....
T Consensus 73 l~~~~~---~~~~d~vih~a~ 90 (352)
T PLN02240 73 LEKVFA---STRFDAVIHFAG 90 (352)
T ss_pred HHHHHH---hCCCCEEEEccc
Confidence 544332 236898887654
No 465
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=48.49 E-value=1.4e+02 Score=23.71 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=49.3
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCceEEecccCCchhHHHHHhh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------~~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++|=.| |+|++...+++.+.. ...+|+.+|.++.. ...++.++..|+++.+....+.+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLA-----------EGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 55677666 667778777776531 35789999877631 113567788999998776555543
Q ss_pred cC--CCcccEEEeCCC
Q 029488 115 FD--GCKADLVVCDGA 128 (192)
Q Consensus 115 ~~--~~~~DlV~~d~~ 128 (192)
.. -...|.++....
T Consensus 74 ~~~~~~~id~li~~ag 89 (257)
T PRK07067 74 AVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHcCCCCEEEECCC
Confidence 21 136899888753
No 466
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=48.46 E-value=82 Score=26.24 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=39.9
Q ss_pred CeEEeEcCCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCC---CceEEecccCCchhHHHHHhhcCCC
Q 029488 43 KRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGC 118 (192)
Q Consensus 43 ~~vLDlG~GpG~-~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~~---~v~~~~~Di~~~~~~~~~~~~~~~~ 118 (192)
++||=+|+|++. ....+.+.. ...+|+++|.++..+.. ...+...+..+......+.+.....
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~-------------~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~ 68 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSL-------------LKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKE 68 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhc-------------cCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHh
Confidence 478999999995 444454442 24799999998754311 1111112223332334444444455
Q ss_pred cccEEEeC
Q 029488 119 KADLVVCD 126 (192)
Q Consensus 119 ~~DlV~~d 126 (192)
.+|.|++-
T Consensus 69 ~id~ii~~ 76 (326)
T PRK12767 69 KIDLLIPL 76 (326)
T ss_pred CCCEEEEC
Confidence 78888763
No 467
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=48.44 E-value=76 Score=25.23 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=50.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~-~~~v~~~~~Di~~~~~~~~ 110 (192)
+++++|=.| |+|+.+..+++++-. ...+|+.++.++.. . -.++.++.+|+++.+....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE-----------AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIER 78 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 467888888 678888888777531 35689999876521 0 1246678999999877654
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... ...+|.|+....
T Consensus 79 ~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 79 LAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 443321 136899988764
No 468
>PRK08339 short chain dehydrogenase; Provisional
Probab=48.43 E-value=1.4e+02 Score=23.96 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=49.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--CCCceEEecccCCchhHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAE 109 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~--~~~v~~~~~Di~~~~~~~ 109 (192)
.++++|=.|++ |++...+++..-. ...+|+.++.++.. . -.++.++..|+++.+...
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~ 74 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLAR-----------AGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLE 74 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHH
Confidence 36778877765 5566666665431 35789999877521 0 125778899999987666
Q ss_pred HHHhhcC-CCcccEEEeCCC
Q 029488 110 VVIRHFD-GCKADLVVCDGA 128 (192)
Q Consensus 110 ~~~~~~~-~~~~DlV~~d~~ 128 (192)
.+.+... -+.+|.++.+..
T Consensus 75 ~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 75 RTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHhhCCCcEEEECCC
Confidence 5554431 146899888764
No 469
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=48.02 E-value=36 Score=31.12 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~ 88 (192)
.+.|||=+||| |+++.|+..+... .-.+|.-||+..
T Consensus 11 ~~~riLvVGaG--GIGCELLKnLal~----------gf~~IhiIDlDT 46 (603)
T KOG2013|consen 11 KSGRILVVGAG--GIGCELLKNLALT----------GFEEIHIIDLDT 46 (603)
T ss_pred ccCeEEEEecC--cccHHHHHHHHHh----------cCCeeEEEeccc
Confidence 47799999985 5665555543211 346788888765
No 470
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=47.94 E-value=94 Score=21.74 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=25.3
Q ss_pred cccEEEeCCCCCCCCC-cccc--HHHHHHHHHHHHHHHHHhcccCCEEEEEe
Q 029488 119 KADLVVCDGAPDVTGL-HDMD--EFVQSQLILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 119 ~~DlV~~d~~~~~~g~-~~~~--~~~~~~l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
+||+|+.|++-..... .... ......+....+..+.++| +|.+.+-+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~ 51 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFIT 51 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEe
Confidence 6899999986321110 0000 0001223344567777877 99986644
No 471
>PRK09186 flagellin modification protein A; Provisional
Probab=47.60 E-value=1.2e+02 Score=23.93 Aligned_cols=76 Identities=20% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchhH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~~ 108 (192)
+++++|=.|+ +|+.+..++..... ...+|+.++.++.. ....+.++.+|+++.+..
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~-----------~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILE-----------AGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHH
Confidence 4667777776 56788777776531 35789988877531 112355678999998765
Q ss_pred HHHHhhcC--CCcccEEEeCCC
Q 029488 109 EVVIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 109 ~~~~~~~~--~~~~DlV~~d~~ 128 (192)
..+.+... -..+|.|+.+..
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCAY 92 (256)
T ss_pred HHHHHHHHHHcCCccEEEECCc
Confidence 55444321 135899998863
No 472
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=47.48 E-value=1.4e+02 Score=24.50 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=47.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
++++.+||-.|+| +....+.+.... ....|++++.++... . .++..+..+. +..... .
T Consensus 160 ~~~~~~vlI~g~g--~iG~~~~~~a~~-----------~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~- 221 (330)
T cd08245 160 PRPGERVAVLGIG--GLGHLAVQYARA-----------MGFETVAITRSPDKRELARKLGADEVVDSG-AELDEQ---A- 221 (330)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhCCcEEeccC-CcchHH---h-
Confidence 4678899998764 354444333220 246788888765311 0 1221111111 111110 1
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
. ...+|+++.-.. . ......+.+.|+++|.++..
T Consensus 222 ~-~~~~d~vi~~~~-~----------------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 222 A-AGGADVILVTVV-S----------------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred c-cCCCCEEEECCC-c----------------HHHHHHHHHhcccCCEEEEE
Confidence 1 246898885311 0 12345678899999998864
No 473
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.37 E-value=1.3e+02 Score=23.29 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=45.1
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC-CCceEEecccCCchhHHHHHhhcCCCcc
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFDGCKA 120 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~-~~v~~~~~Di~~~~~~~~~~~~~~~~~~ 120 (192)
++++|=.|+ +|+....+++.+.. ...+|+.++.++.... .++..+..|+++. ...+.+.. ..+
T Consensus 5 ~k~~lVtGa-s~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~--~~~~~~~~--~~i 68 (235)
T PRK06550 5 TKTVLITGA-ASGIGLAQARAFLA-----------QGAQVYGVDKQDKPDLSGNFHFLQLDLSDD--LEPLFDWV--PSV 68 (235)
T ss_pred CCEEEEcCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCcccccCCcEEEEECChHHH--HHHHHHhh--CCC
Confidence 567776665 56666666665421 3578999988764322 3577788999886 33333433 378
Q ss_pred cEEEeCCC
Q 029488 121 DLVVCDGA 128 (192)
Q Consensus 121 DlV~~d~~ 128 (192)
|.|+.+..
T Consensus 69 d~lv~~ag 76 (235)
T PRK06550 69 DILCNTAG 76 (235)
T ss_pred CEEEECCC
Confidence 99998764
No 474
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=47.18 E-value=1.5e+02 Score=23.81 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=52.6
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~ 114 (192)
+++|++++=.|+ +|+....+++.... ...+|+.++.++... ..++..+ -|.........+.+.
T Consensus 142 ~~~g~~vlI~g~-~~~~g~~~~~~a~~-----------~g~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 208 (325)
T cd08253 142 AKAGETVLVHGG-SGAVGHAAVQLARW-----------AGARVIATASSAEGAELVRQAGADAV-FNYRAEDLADRILAA 208 (325)
T ss_pred CCCCCEEEEEcC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHcCCCEE-EeCCCcCHHHHHHHH
Confidence 467888887776 56666665554321 246788887765210 0122111 122232333344444
Q ss_pred cCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 115 FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 115 ~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
.++..+|+++.... . ..+..+.+.++++|.++.
T Consensus 209 ~~~~~~d~vi~~~~-----~-------------~~~~~~~~~l~~~g~~v~ 241 (325)
T cd08253 209 TAGQGVDVIIEVLA-----N-------------VNLAKDLDVLAPGGRIVV 241 (325)
T ss_pred cCCCceEEEEECCc-----h-------------HHHHHHHHhhCCCCEEEE
Confidence 45568999985421 0 112344578888998875
No 475
>PRK06953 short chain dehydrogenase; Provisional
Probab=46.17 E-value=1.4e+02 Score=23.14 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=48.7
Q ss_pred eEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHHHhhcCCCc
Q 029488 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCK 119 (192)
Q Consensus 44 ~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~~~~~~~ 119 (192)
++|=.|+ +|+++..+++.+.. ...+|+.++.++... ..++.+...|+++.+....+...+.+..
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRA-----------DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEA 70 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCC
Confidence 4565555 57777777766531 357899998775311 1245678999999877666654454457
Q ss_pred ccEEEeCCC
Q 029488 120 ADLVVCDGA 128 (192)
Q Consensus 120 ~DlV~~d~~ 128 (192)
+|.|+....
T Consensus 71 ~d~vi~~ag 79 (222)
T PRK06953 71 LDAAVYVAG 79 (222)
T ss_pred CCEEEECCC
Confidence 999998764
No 476
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=46.14 E-value=1.8e+02 Score=24.49 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=48.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~~ 111 (192)
.+++||=.|+ +|..+..+++.+-. .+.+|++++.++.. ...++.++.+|+++.....++
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQ-----------RGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA 76 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH
Confidence 4778888884 78888888776531 34689988766421 113577889999987654332
Q ss_pred HhhcCCCcccEEEeCCCC
Q 029488 112 IRHFDGCKADLVVCDGAP 129 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~ 129 (192)
+. .+|.|+..+..
T Consensus 77 ---~~--~~d~Vih~A~~ 89 (353)
T PLN02896 77 ---VK--GCDGVFHVAAS 89 (353)
T ss_pred ---Hc--CCCEEEECCcc
Confidence 22 57988877653
No 477
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=46.11 E-value=1.8e+02 Score=24.33 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=52.2
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCCchhHHHHHh
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
++++.+||-.| +|+.+..+.+.... .+. .|+.++.++... -.++..+ -|-.+......+.+
T Consensus 173 ~~~~~~vlI~g--~g~vg~~~~~~a~~-----------~G~~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 238 (350)
T cd08240 173 LVADEPVVIIG--AGGLGLMALALLKA-----------LGPANIIVVDIDEAKLEAAKAAGADVV-VNGSDPDAAKRIIK 238 (350)
T ss_pred CCCCCEEEEEC--CcHHHHHHHHHHHH-----------cCCCeEEEEeCCHHHHHHHHHhCCcEE-ecCCCccHHHHHHH
Confidence 45788888885 47676665554321 134 788887664211 0122211 11222222333444
Q ss_pred hcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 029488 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 165 (192)
Q Consensus 114 ~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~ 165 (192)
..++ .+|+++.-... ...+..+.+.|+++|.++.
T Consensus 239 ~~~~-~~d~vid~~g~-----------------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 239 AAGG-GVDAVIDFVNN-----------------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred HhCC-CCcEEEECCCC-----------------HHHHHHHHHHhhcCCeEEE
Confidence 4444 79999853210 1235667889999999986
No 478
>PRK12828 short chain dehydrogenase; Provisional
Probab=45.89 E-value=90 Score=24.12 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=48.8
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCceEEecccCCchhHHHHHh
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~--------~~~~v~~~~~Di~~~~~~~~~~~ 113 (192)
++++|=.| |+|+.+..+++..-. ...+|++++.++.. ...++.....|+.+.+....+.+
T Consensus 7 ~k~vlItG-atg~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (239)
T PRK12828 7 GKVVAITG-GFGGLGRATAAWLAA-----------RGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVD 74 (239)
T ss_pred CCEEEEEC-CCCcHhHHHHHHHHH-----------CCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHH
Confidence 56777777 457788777776531 35789999886531 11356677899998776555444
Q ss_pred hcC--CCcccEEEeCCC
Q 029488 114 HFD--GCKADLVVCDGA 128 (192)
Q Consensus 114 ~~~--~~~~DlV~~d~~ 128 (192)
... -.++|.|+....
T Consensus 75 ~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 75 EVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHhCCcCEEEECCc
Confidence 321 137899988753
No 479
>PRK05867 short chain dehydrogenase; Provisional
Probab=45.74 E-value=1.5e+02 Score=23.43 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=49.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++++|=.|++ |+++..+++++.. ...+|+.++.++.. .-.++..+..|+++.+....
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVE-----------AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 47788888864 5666666665431 35689888877531 01246678899999876655
Q ss_pred HHhhcC--CCcccEEEeCCC
Q 029488 111 VIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~~--~~~~DlV~~d~~ 128 (192)
+.+... -+.+|.++.+..
T Consensus 76 ~~~~~~~~~g~id~lv~~ag 95 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAG 95 (253)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 544321 147899998864
No 480
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=45.43 E-value=1.7e+02 Score=24.09 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=48.5
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCceEEecccCCchhHHHHHhhcC
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHFD 116 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~--~--~~v~~~~~Di~~~~~~~~~~~~~~ 116 (192)
++..++=+..|+|+....+.+.... ...+|++++.++... . -++..+ -|..+......+.+..+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~-----------~G~~vi~~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~v~~~~~ 209 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA-----------DGIKVINIVRRKEQVDLLKKIGAEYV-LNSSDPDFLEDLKELIA 209 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHcCCcEE-EECCCccHHHHHHHHhC
Confidence 3445554434556665554433210 246799988776321 0 122211 11222233344444455
Q ss_pred CCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 117 ~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+..+|+|+... |. .....+.+.|+++|+++..
T Consensus 210 ~~~~d~vid~~-----g~-------------~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 210 KLNATIFFDAV-----GG-------------GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCCCcEEEECC-----Cc-------------HHHHHHHHhhCCCCEEEEE
Confidence 56799998421 21 1123356778999998874
No 481
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=45.28 E-value=1.6e+02 Score=25.25 Aligned_cols=100 Identities=18% Similarity=0.121 Sum_probs=54.1
Q ss_pred cccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEE-e-cccCCchhHHH
Q 029488 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQV-Q-GDITNARTAEV 110 (192)
Q Consensus 38 ~l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~-~-~Di~~~~~~~~ 110 (192)
-+++|.+||=.|+ |+....+.+.... ... .|++++.++... -.++..+ . .+.........
T Consensus 200 ~~~~g~~VlV~g~--g~vG~~ai~lA~~-----------~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~ 266 (384)
T cd08265 200 GFRPGAYVVVYGA--GPIGLAAIALAKA-----------AGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEK 266 (384)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHH
Confidence 3567888877754 6776665443321 134 789998765311 0122111 1 11111123344
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+.+..++..+|+|+.-. |. . ...+..+.+.|+++|+++..
T Consensus 267 v~~~~~g~gvDvvld~~-----g~--~---------~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 267 VMEVTKGWGADIQVEAA-----GA--P---------PATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred HHHhcCCCCCCEEEECC-----CC--c---------HHHHHHHHHHHHcCCEEEEE
Confidence 55556667899998531 10 0 02345667889999999863
No 482
>PRK06949 short chain dehydrogenase; Provisional
Probab=44.95 E-value=72 Score=25.20 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=50.4
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++++|=.| |+|+....+++.... ...+|++++.++.. ...++.++..|+++.+...+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQ-----------AGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKA 75 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 467888888 677788777776531 35689999877531 01246778899998766555
Q ss_pred HHhhc--CCCcccEEEeCCC
Q 029488 111 VIRHF--DGCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~--~~~~~DlV~~d~~ 128 (192)
+.+.. ....+|.++....
T Consensus 76 ~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 76 AVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 44332 1246899998864
No 483
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=44.83 E-value=1.6e+02 Score=24.07 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=50.4
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~ 111 (192)
+++|.+||=.|+ +|+.+.. +++.. +..++.+.-+.... -.++..+. +..+......+
T Consensus 137 ~~~g~~vlI~g~-~g~ig~~~~~~a~~~--------------G~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~i 200 (324)
T cd08292 137 VKPGQWLIQNAA-GGAVGKLVAMLAAAR--------------GINVINLVRRDAGVAELRALGIGPVV-STEQPGWQDKV 200 (324)
T ss_pred CCCCCEEEEccc-ccHHHHHHHHHHHHC--------------CCeEEEEecCHHHHHHHHhcCCCEEE-cCCCchHHHHH
Confidence 467888887764 4555544 44443 35666665443210 01332211 12222333445
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.+..++..+|+|+... |. ..+..+.+.|+++|+++..
T Consensus 201 ~~~~~~~~~d~v~d~~-----g~-------------~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 201 REAAGGAPISVALDSV-----GG-------------KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred HHHhCCCCCcEEEECC-----CC-------------hhHHHHHHhhcCCcEEEEE
Confidence 5555667899998532 11 1224567899999999864
No 484
>PRK07102 short chain dehydrogenase; Provisional
Probab=44.45 E-value=1.3e+02 Score=23.58 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=49.0
Q ss_pred CeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCceEEecccCCchhHHHH
Q 029488 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 43 ~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-----------~~~~v~~~~~Di~~~~~~~~~ 111 (192)
++++=.| |+|+.+..+++..-. .+.+|++++.++.. ...++.++..|+.+......+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAA-----------AGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAF 69 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHh-----------cCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 4677777 567888777776531 35689999887631 123677889999998766555
Q ss_pred HhhcCCCcccEEEeCCC
Q 029488 112 IRHFDGCKADLVVCDGA 128 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~ 128 (192)
.+... ..+|.++.+..
T Consensus 70 ~~~~~-~~~d~vv~~ag 85 (243)
T PRK07102 70 LDSLP-ALPDIVLIAVG 85 (243)
T ss_pred HHHHh-hcCCEEEECCc
Confidence 54432 25799998753
No 485
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=43.97 E-value=1.4e+02 Score=24.47 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred eEEecccCCchhHHHHHhhcCCCcccEEEeCCCCCCCCC-----------cccc----HHHHHHH-HHHHHHHHHHhccc
Q 029488 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL-----------HDMD----EFVQSQL-ILAGLTVVTHVLKE 159 (192)
Q Consensus 96 ~~~~~Di~~~~~~~~~~~~~~~~~~DlV~~d~~~~~~g~-----------~~~~----~~~~~~l-~~~~l~~a~~~Lkp 159 (192)
....+|+.. ..+.+++.++|+++.|++...... ...+ ....... ....+..+.++|++
T Consensus 18 ~i~~~d~~~------~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~ 91 (302)
T COG0863 18 KIYKGDCLE------ILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKP 91 (302)
T ss_pred heecchHHH------HHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecC
Q ss_pred CCEEEEEecCCCChHHHHHHHHccCCeeeEEe
Q 029488 160 GGKFIAKIFRGKDTSLLYCQVNKMLVKTPVYF 191 (192)
Q Consensus 160 gG~~v~k~~~~~~~~~l~~~l~~~f~~v~~~~ 191 (192)
+|.+++..-............+.-|.-+..++
T Consensus 92 ~~~~~v~~~~~~~~~~~~~~~~~gf~~~~~ii 123 (302)
T COG0863 92 GGSLYVIDPFSNLARIEDIAKKLGFEILGKII 123 (302)
T ss_pred CCEEEEECCchhhhHHHHHHHhCCCeEeeeEE
No 486
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=43.70 E-value=1.7e+02 Score=23.39 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=50.6
Q ss_pred ccCCCeEEeEcCCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCchhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~---l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~~~~~~ 111 (192)
+++|.+||=.|+ +|+.... +++.. ...|++++.++... ..++..+. +..+......+
T Consensus 134 ~~~g~~vlI~g~-~g~~g~~~~~~a~~~--------------g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 197 (320)
T cd05286 134 VKPGDTVLVHAA-AGGVGLLLTQWAKAL--------------GATVIGTVSSEEKAELARAAGADHVI-NYRDEDFVERV 197 (320)
T ss_pred CCCCCEEEEEcC-CchHHHHHHHHHHHc--------------CCEEEEEcCCHHHHHHHHHCCCCEEE-eCCchhHHHHH
Confidence 467888888885 4444444 44443 46788887665210 01222111 11112223334
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
.....+..+|+|+.-.. + ..+..+.+.|+++|.++..
T Consensus 198 ~~~~~~~~~d~vl~~~~----~--------------~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 198 REITGGRGVDVVYDGVG----K--------------DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred HHHcCCCCeeEEEECCC----c--------------HhHHHHHHhhccCcEEEEE
Confidence 44445567999985321 0 1234467889999998753
No 487
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=43.69 E-value=44 Score=26.46 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=63.6
Q ss_pred cCC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCceEEecccCCchhHHHHHhhc---
Q 029488 49 CAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVIRHF--- 115 (192)
Q Consensus 49 G~G-pG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------~~~~v~~~~~Di~~~~~~~~~~~~~--- 115 (192)
|+| ++++...+++.+.. ...+|+.++.++.. ...+..++..|+++.+....+.+..
T Consensus 1 g~~~s~GiG~aia~~l~~-----------~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAE-----------EGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVER 69 (241)
T ss_dssp STSSTSHHHHHHHHHHHH-----------TTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhh
Confidence 444 56777777776531 36899999988742 0123556899999987766665542
Q ss_pred CCCcccEEEeCCCCCC-----CCCcc--ccHHHHH---H--HHHHHHHHHHHhcccCCEEEEEe
Q 029488 116 DGCKADLVVCDGAPDV-----TGLHD--MDEFVQS---Q--LILAGLTVVTHVLKEGGKFIAKI 167 (192)
Q Consensus 116 ~~~~~DlV~~d~~~~~-----~g~~~--~~~~~~~---~--l~~~~l~~a~~~LkpgG~~v~k~ 167 (192)
-.+.+|.++.+..... ....+ .+++... . -.....+.+...++++|.++...
T Consensus 70 ~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 70 FGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp HCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 1158998887753211 11111 1122211 1 12334666677899999988754
No 488
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.43 E-value=1.8e+02 Score=23.58 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=46.1
Q ss_pred EEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC---CCceEEecccCCchhHHHHHhhcCCCcc-
Q 029488 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI---EGVIQVQGDITNARTAEVVIRHFDGCKA- 120 (192)
Q Consensus 45 vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~~---~~v~~~~~Di~~~~~~~~~~~~~~~~~~- 120 (192)
||=.|+ +|-....+++++.. ...+|+++|.++.... .++.++.+|+++......... ..
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~ 65 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLA-----------AGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAK-----GVP 65 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHh-----------CCCeEEEEeCCCccccccccccceeeecccchHHHHHHHh-----cCC
Confidence 566676 88888888888741 2579999998764322 367888999988744333222 22
Q ss_pred cEEEeCCCC
Q 029488 121 DLVVCDGAP 129 (192)
Q Consensus 121 DlV~~d~~~ 129 (192)
|.|+...+.
T Consensus 66 d~vih~aa~ 74 (314)
T COG0451 66 DAVIHLAAQ 74 (314)
T ss_pred CEEEEcccc
Confidence 888877653
No 489
>PRK05872 short chain dehydrogenase; Provisional
Probab=43.37 E-value=1.8e+02 Score=23.80 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCceEEecccCCchhHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~---~~v~~~~~Di~~~~~~~~~ 111 (192)
+++++|=.|+ +|+.+..+++.+.. .+.+|+.++.++.. .+ ..+..+..|+++.+....+
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHA-----------RGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 4678887775 46677666666531 35788888876531 11 1344456899998766555
Q ss_pred HhhcC--CCcccEEEeCCCC
Q 029488 112 IRHFD--GCKADLVVCDGAP 129 (192)
Q Consensus 112 ~~~~~--~~~~DlV~~d~~~ 129 (192)
.+... -..+|.|+.+...
T Consensus 76 ~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 44321 1479999998753
No 490
>PRK07041 short chain dehydrogenase; Provisional
Probab=42.96 E-value=1.6e+02 Score=22.81 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---CCCceEEecccCCchhHHHHHhhcCCCccc
Q 029488 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---IEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (192)
Q Consensus 51 GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~---~~~v~~~~~Di~~~~~~~~~~~~~~~~~~D 121 (192)
|+|+....+++.+-. ...+|+.++.++.. . -.++.++..|+++.+....+.+.. +.+|
T Consensus 5 as~~iG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~id 71 (230)
T PRK07041 5 GSSGIGLALARAFAA-----------EGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA--GPFD 71 (230)
T ss_pred CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc--CCCC
Confidence 567777777766531 35789999877421 0 135677889999988776666544 4689
Q ss_pred EEEeCCC
Q 029488 122 LVVCDGA 128 (192)
Q Consensus 122 lV~~d~~ 128 (192)
.++.+..
T Consensus 72 ~li~~ag 78 (230)
T PRK07041 72 HVVITAA 78 (230)
T ss_pred EEEECCC
Confidence 9998864
No 491
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=42.68 E-value=2.1e+02 Score=24.18 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=46.1
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCceEEecccCCc
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNA 105 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~---------------~~~~v~~~~~Di~~~ 105 (192)
++++||=.| |+|-.+.++...+-. .+.+|+++|..+.. ...++.++.+|+++.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLF-----------LNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHH-----------CCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 457888777 577777777776531 24689999975421 013577889999986
Q ss_pred hhHHHHHhhcCCCcccEEEeCCC
Q 029488 106 RTAEVVIRHFDGCKADLVVCDGA 128 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~DlV~~d~~ 128 (192)
.....+ +. .+|.|+.-++
T Consensus 82 ~~l~~~---~~--~~d~ViHlAa 99 (348)
T PRK15181 82 TDCQKA---CK--NVDYVLHQAA 99 (348)
T ss_pred HHHHHH---hh--CCCEEEECcc
Confidence 544333 22 4788887664
No 492
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=42.63 E-value=1.9e+02 Score=23.63 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=50.2
Q ss_pred cccCCCeEEeEcC--CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCceEEecccCCch-hHHH
Q 029488 38 IFEGVKRVVDLCA--APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNAR-TAEV 110 (192)
Q Consensus 38 ~l~~g~~vLDlG~--GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~~----~~~v~~~~~Di~~~~-~~~~ 110 (192)
.++++.+||=.|+ +.|..+..+++.. +..++.+..++... -.++..+ .+..+.+ ....
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~--------------g~~v~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 201 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKY--------------GAATIITTSSEEKVDFCKKLAAIIL-IRYPDEEGFAPK 201 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHcCCcEE-EecCChhHHHHH
Confidence 3567888887774 2333344455444 35555566554210 0122111 1112211 3333
Q ss_pred HHhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 029488 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 166 (192)
Q Consensus 111 ~~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~LkpgG~~v~k 166 (192)
+.+..++..+|+++... + ...+..+.+.|+++|.++..
T Consensus 202 ~~~~~~~~~~d~~i~~~-----~-------------~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 202 VKKLTGEKGVNLVLDCV-----G-------------GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred HHHHhCCCCceEEEECC-----c-------------hHHHHHHHHHhccCCeEEEE
Confidence 44445556799999532 1 12345677889999998863
No 493
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=42.24 E-value=1.7e+02 Score=23.15 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=48.6
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C-CCCceEEecccCCchhHHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P-IEGVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~-------~-~~~v~~~~~Di~~~~~~~~~~ 112 (192)
+|+.+|=.|+ +|+.+..+++.+.. ...+|+++|.+... . -..+..+..|+++.+....+.
T Consensus 9 ~~k~~lItG~-~~gIG~a~a~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 76 (253)
T PRK08993 9 EGKVAVVTGC-DTGLGQGMALGLAE-----------AGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALL 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 3677888885 56777777776531 36789998876421 0 124566789999876655544
Q ss_pred hhc--CCCcccEEEeCCC
Q 029488 113 RHF--DGCKADLVVCDGA 128 (192)
Q Consensus 113 ~~~--~~~~~DlV~~d~~ 128 (192)
+.. ....+|.++.+..
T Consensus 77 ~~~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 77 ERAVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 432 1137899988764
No 494
>PRK06172 short chain dehydrogenase; Provisional
Probab=41.86 E-value=1.3e+02 Score=23.71 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=49.6
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCceEEecccCCchhHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~----------~~~~v~~~~~Di~~~~~~~~ 110 (192)
.++++|=.|+ +|+++..+++++.. ...+|+.++.++.. .-.++..+.+|+++.+....
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAR-----------EGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 3678888885 66777777666531 35689999987531 01246778899999876555
Q ss_pred HHhhc--CCCcccEEEeCCC
Q 029488 111 VIRHF--DGCKADLVVCDGA 128 (192)
Q Consensus 111 ~~~~~--~~~~~DlV~~d~~ 128 (192)
+.+.. .-..+|.|+.+..
T Consensus 74 ~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 74 LVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 44322 1136899998864
No 495
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=41.59 E-value=1.9e+02 Score=23.39 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------C---CCCCceEEecccCCchhHHHHHhhcCCCcc
Q 029488 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------A---PIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (192)
Q Consensus 51 GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~-------~---~~~~v~~~~~Di~~~~~~~~~~~~~~~~~~ 120 (192)
|+|..+..+++++-.+ ++..+|+++|.... . ..+++.++.+|+.+.+...++.+ +..+
T Consensus 7 atG~iG~~l~~~l~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~~~ 74 (317)
T TIGR01181 7 GAGFIGSNFVRYILNE---------HPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFT---EHQP 74 (317)
T ss_pred CCchHHHHHHHHHHHh---------CCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHh---hcCC
Confidence 6788888888765210 02357888875210 0 11367788899999766544433 2358
Q ss_pred cEEEeCCC
Q 029488 121 DLVVCDGA 128 (192)
Q Consensus 121 DlV~~d~~ 128 (192)
|.|+...+
T Consensus 75 d~vi~~a~ 82 (317)
T TIGR01181 75 DAVVHFAA 82 (317)
T ss_pred CEEEEccc
Confidence 99987664
No 496
>PRK05717 oxidoreductase; Validated
Probab=40.81 E-value=1.8e+02 Score=22.97 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=48.7
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC-CCceEEecccCCchhHHHHHh
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~-~~v~~~~~Di~~~~~~~~~~~ 113 (192)
.|+++|=.|++ |+++..+++.+.. ...+|+.+|.++.. .. .++.++..|+++.+....+.+
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIA-----------EGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVA 76 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHH
Confidence 47788877764 6777666666531 35789999877521 11 246778999999766544333
Q ss_pred hcC--CCcccEEEeCCC
Q 029488 114 HFD--GCKADLVVCDGA 128 (192)
Q Consensus 114 ~~~--~~~~DlV~~d~~ 128 (192)
... ...+|.++.+..
T Consensus 77 ~~~~~~g~id~li~~ag 93 (255)
T PRK05717 77 EVLGQFGRLDALVCNAA 93 (255)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 221 136899998864
No 497
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=40.47 E-value=32 Score=31.68 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCChHHHHHHHHccCC
Q 029488 147 LAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQVNKMLV 185 (192)
Q Consensus 147 ~~~l~~a~~~LkpgG~~v~k~~~~~~~~~l~~~l~~~f~ 185 (192)
..+.+.+.+.|+.||..++-+|...+.++++..|+.+.+
T Consensus 395 ~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr 433 (637)
T COG1782 395 KELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMR 433 (637)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHh
Confidence 467788899999999999999999999998888877654
No 498
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=40.36 E-value=2.3e+02 Score=24.00 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=51.4
Q ss_pred ccCCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC----CCCceEEecccCC--chhHHHH
Q 029488 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP----IEGVIQVQGDITN--ARTAEVV 111 (192)
Q Consensus 39 l~~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~-~V~gvD~~~~~~----~~~v~~~~~Di~~--~~~~~~~ 111 (192)
+++|.+||=.|+ |+....+.+.... ... .|++++.++... -.++.... |..+ ......+
T Consensus 185 ~~~g~~VlV~G~--g~vG~~a~q~ak~-----------~G~~~vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~v 250 (369)
T cd08301 185 VKKGSTVAIFGL--GAVGLAVAEGARI-----------RGASRIIGVDLNPSKFEQAKKFGVTEFV-NPKDHDKPVQEVI 250 (369)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-----------cCCCeEEEEcCCHHHHHHHHHcCCceEE-cccccchhHHHHH
Confidence 468999988875 6776665544321 134 799998876321 11221111 1111 1222233
Q ss_pred HhhcCCCcccEEEeCCCCCCCCCccccHHHHHHHHHHHHHHHHHhcccC-CEEEEE
Q 029488 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG-GKFIAK 166 (192)
Q Consensus 112 ~~~~~~~~~DlV~~d~~~~~~g~~~~~~~~~~~l~~~~l~~a~~~Lkpg-G~~v~k 166 (192)
.+... +.+|+++-- .|. ...+..+...+++| |.+++.
T Consensus 251 ~~~~~-~~~d~vid~-----~G~------------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 251 AEMTG-GGVDYSFEC-----TGN------------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred HHHhC-CCCCEEEEC-----CCC------------hHHHHHHHHHhhcCCCEEEEE
Confidence 33333 378988742 111 12455677888996 888764
No 499
>PRK07063 short chain dehydrogenase; Provisional
Probab=40.32 E-value=1.9e+02 Score=22.95 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCceEEecccCCchhHH
Q 029488 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (192)
Q Consensus 42 g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------------~~~~v~~~~~Di~~~~~~~ 109 (192)
++++|=.|++ |+....+++.+-. ...+|+.++.++.. ...++.++..|+++.+...
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~-----------~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAR-----------EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVA 74 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHH
Confidence 6788888865 6677666665431 35789999876531 1124667889999987655
Q ss_pred HHHhhcC--CCcccEEEeCCC
Q 029488 110 VVIRHFD--GCKADLVVCDGA 128 (192)
Q Consensus 110 ~~~~~~~--~~~~DlV~~d~~ 128 (192)
.+.+... -+.+|.++.+..
T Consensus 75 ~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 75 AAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHhCCCcEEEECCC
Confidence 5444321 147899998864
No 500
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.71 E-value=91 Score=24.67 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCCeEEeEcCCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCC--CceEEecccCCchhHHHHH
Q 029488 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE--GVIQVQGDITNARTAEVVI 112 (192)
Q Consensus 41 ~g~~vLDlG~GpG~~s~~l~~~~~~~~~~~~~~~~~~~~~V~gvD~~~~~------~~~--~v~~~~~Di~~~~~~~~~~ 112 (192)
+++++|=.|+. |+++..++.++-. ....|+.++.++.. ..+ ++.++.+|+++.+....+.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAE-----------AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVF 77 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHH
Confidence 56799988875 7777777766431 35689999987531 112 4577889999987655444
Q ss_pred hhcC--CCcccEEEeCCC
Q 029488 113 RHFD--GCKADLVVCDGA 128 (192)
Q Consensus 113 ~~~~--~~~~DlV~~d~~ 128 (192)
+... -.++|.|+....
T Consensus 78 ~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 3321 137899998764
Done!