BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029490
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0Z|A Chain A, Crystal Structure Of A Coiled-Coil Domain From Human Rock
I
pdb|3O0Z|B Chain B, Crystal Structure Of A Coiled-Coil Domain From Human Rock
I
pdb|3O0Z|C Chain C, Crystal Structure Of A Coiled-Coil Domain From Human Rock
I
pdb|3O0Z|D Chain D, Crystal Structure Of A Coiled-Coil Domain From Human Rock
I
Length = 168
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 96 VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKY 152
+ ++ +I S+ +E+K L H +K E E KEA + N KEK L E+ + Y
Sbjct: 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDXLNHSEKEKNNL-----EIDLNY 143
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN-EKNKEKVQLI 142
+E+ + R I++ N+ +K CQ +ER KE +E F E N++++Q I
Sbjct: 154 QEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRI 203
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN-EKNKEKVQLI 142
+E+ + R I++ N+ +K CQ +ER KE +E F E N++++Q I
Sbjct: 154 QEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRI 203
>pdb|2V1Y|B Chain B, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
Binding Domain (Abd) In A Complex With The Ish2 Domain
From P85 Alpha
Length = 170
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN-EKNKEKVQLI 142
+E+ R I++ N+ +K CQ +ER KE +E F E N++++Q I
Sbjct: 45 QEIQXKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRI 94
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 85 LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136
++A+AD +E AVV V+ L P T K+E+++ ++A E K
Sbjct: 326 MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVK 377
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 85 LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136
++A+AD +E AVV V+ L P T K+E+++ ++A E K
Sbjct: 322 MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVK 373
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 26.9 bits (58), Expect = 6.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 85 LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136
++A+AD +E AVV V+ L P T K+E+++ ++A E K
Sbjct: 296 MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVK 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,575,800
Number of Sequences: 62578
Number of extensions: 111633
Number of successful extensions: 557
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 58
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)