BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029490
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2UUV3|COG6_ASPOR Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cog6 PE=3 SV=1
Length = 812
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G+V E+ KR+ T+ L D MRK +++ R+ V +E
Sbjct: 144 DVQKEVVDCNAEIVRDFGKVAEQLKRIGTVITSLNQTCDEMRKHISLARQDTAPVLEEAS 203
Query: 112 PLGHTCQKKEREYK-EALEAFN 132
L + QKKE E K + L+AF
Sbjct: 204 TLMN--QKKEAETKQQLLDAFT 223
>sp|A2QLL1|COG6_ASPNC Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=cog6 PE=3 SV=1
Length = 716
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ T+ L D MRK + R++ V +E
Sbjct: 80 DVQKEVVDSNAEIVRDFGLVAEQLKRIGTVITNLNQTCDEMRKHIVSARQETTPVLEEAS 139
Query: 112 PLGHTCQKKEREYK-EALEAFNE 133
L Q+KE E K E LEAF +
Sbjct: 140 ALMK--QRKEAETKQELLEAFTQ 160
>sp|Q1E6R9|COG6_COCIM Conserved oligomeric Golgi complex subunit 6 OS=Coccidioides
immitis (strain RS) GN=COG6 PE=3 SV=2
Length = 732
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 6 PQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALT----TFRAKEEEIEKKKLEVR 61
P+P+ N+L S+ S++ ++ E + + L T R +I+K+ ++
Sbjct: 24 PKPTALFNRLNAVLST---SYTDPDIRDSLETLDKRGLQNTAETRRTLRLDIQKEVIDSN 80
Query: 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKE 121
+ G+V E+ R+ L + + MR+ + R++ + V +E L QK+E
Sbjct: 81 GSIIQDFGKVAEQLSRIGAAISHLNTICEDMRQHITSARQETEPVLEEAAAL--LSQKQE 138
Query: 122 REYKE-ALEAFNEK---NKEKVQLITKLME-VSVKYFSCSDRK 159
E K+ L+AFN+ + + + ++T E V ++F R+
Sbjct: 139 VETKQHLLDAFNKHFVLSSDDISILTSTAEPVDDRFFQILSRQ 181
>sp|Q0UYL3|COG6_PHANO Conserved oligomeric Golgi complex subunit 6 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=COG6 PE=3 SV=1
Length = 694
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ +E ++ G+V E+ KR+ T L + MR +A K+ V +E
Sbjct: 77 DVQKEVIECNGEIVKDFGQVAEQLKRIGTAISSLNSYCADMRSHIAAANKETGPVLEEAT 136
Query: 112 PLGHTCQKKEREYK-EALEAFN 132
G Q+K+ E K + L+AFN
Sbjct: 137 --GLINQRKQVESKQQILQAFN 156
>sp|Q5KWZ7|DNAK_GEOKA Chaperone protein DnaK OS=Geobacillus kaustophilus (strain HTA426)
GN=dnaK PE=1 SV=1
Length = 607
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 15/112 (13%)
Query: 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV----NKELKPLGHTCQ- 118
+++ G EEE +R+ EE A AD RKE A +R + D + +K LK +
Sbjct: 470 IKSSSGLSEEEIQRMIKEAEE-NAEADRKRKEAAELRNEADQLIFMTDKTLKEVEGKVSA 528
Query: 119 ---KKEREYKEALEAFNEKN------KEKVQLITKLMEVSVKYFSCSDRKMQ 161
KK ++ KEAL+A EKN K+K L + ++S+K + + ++ Q
Sbjct: 529 DEIKKAQDAKEALKAALEKNDIDDIRKKKDALQEAVQQLSIKLYEQAAKQAQ 580
>sp|Q9KWS7|DNAK_BACTR Chaperone protein DnaK OS=Bacillus thermoglucosidasius GN=dnaK PE=3
SV=3
Length = 607
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKID----SVNKELKPLGHTCQ- 118
+++ G EEE +R+ EE A AD RKE A +R + D + K LK +
Sbjct: 467 IKSSSGLSEEEIQRMIKEAEE-NAEADRKRKEAAELRNEADHLVFTTEKTLKEVEGKVDE 525
Query: 119 ---KKEREYKEALEAFNEKN------KEKVQLITKLMEVSVKYF 153
KK RE K+AL+A EKN K+K L + ++SVK +
Sbjct: 526 AEVKKAREAKDALKAALEKNDIDDIRKKKEALQEIVQQLSVKLY 569
>sp|Q45551|DNAK_GEOSE Chaperone protein DnaK OS=Geobacillus stearothermophilus GN=dnaK
PE=3 SV=2
Length = 608
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKID----SVNKELKPLGHTCQ- 118
+++ G EEE +R+ EE A AD RKE A +R + D + K LK +
Sbjct: 470 IKSSSGLSEEEIQRMIKEAEE-NAEADRKRKEAAELRNEADQLIFTTEKTLKEVEGKVDE 528
Query: 119 ---KKEREYKEALEAFNEKN------KEKVQLITKLMEVSVKYF 153
KK RE K+AL+A EKN K+K L + ++S+K +
Sbjct: 529 AEVKKAREAKDALKAALEKNDLDEIRKKKEALQEAVQQLSIKLY 572
>sp|C8V7C6|COG6_EMENI Conserved oligomeric Golgi complex subunit 6 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cog6 PE=3 SV=1
Length = 739
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G V E+ KR+ ++ L+ D MRK + + ++ V +E
Sbjct: 81 DVQKEVVDCNAEIVRDFGNVAEQLKRIGSVISSLKETCDEMRKHIVLAKQDTTPVLEEAS 140
Query: 112 PLGHTCQKKEREYKE-ALEAFN 132
L QK+E E K+ L+AF
Sbjct: 141 AL--MIQKQEAETKQRLLDAFT 160
>sp|Q4WLS7|COG6_ASPFU Conserved oligomeric Golgi complex subunit 6 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=cog6 PE=3 SV=1
Length = 752
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ +E ++ G+V E+ +R+ T+ L + MR+ + ++ V +E
Sbjct: 78 DVQKEVVECNAEIVRDFGKVAEQLQRIGTVISSLNQTCEEMRQHIVRAKQDTAPVIEEAS 137
Query: 112 PLGHTCQKKEREYK-EALEAFNEK---NKEKVQLITKLME-VSVKYFSCSDRKMQELH 164
L + QKKE E K + L+AF + +++ + ++T E + ++F+ DR Q H
Sbjct: 138 ALMN--QKKESETKQQLLDAFVKHFIVSEDDLLVLTSAEEPIDDRFFNVLDRVKQVHH 193
>sp|O64584|WAP_ARATH WPP domain-associated protein OS=Arabidopsis thaliana GN=WAP PE=1
SV=2
Length = 825
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129
R++EE RL + +E E L +A RKKI+ V++++ L +++E E ++ +E
Sbjct: 575 RLKEEIHRLGCLVKEKENLVQTAENNLATERKKIEVVSQQINDLQSQVERQETEIQDKIE 634
Query: 130 AFN 132
A +
Sbjct: 635 ALS 637
>sp|Q1PE49|4ON1_ARATH Protein At-4/1 OS=Arabidopsis thaliana GN=At4g26020 PE=1 SV=1
Length = 247
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 23 NLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIR 82
NL SS + +D ++ + + +R+K +E + EV E +L E K+L T
Sbjct: 10 NLLLSSFDQIYEDFKIGLNEINVYRSKSN-VESSRREVLEISNKNLKEENERLKKLYT-- 66
Query: 83 EELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQ 140
E L AD + R K S+ +ELK + + KE E++ ALE+ +K+ KV+
Sbjct: 67 ESLNNFADQLEH-----RTKCHSLKEELKRVNDENKSKEHEHRNALESLRQKHVTKVE 119
>sp|B1H222|GORAB_RAT RAB6-interacting golgin OS=Rattus norvegicus GN=Gorab PE=2 SV=2
Length = 368
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 154 RLMEEKNKRKKALLAQAIAERSRRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 213
Query: 107 NKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148
+ E + E EY A K + K QL L +
Sbjct: 214 SLEYSYARKRFDRAEAEYVTAKLDLQRKTETKEQLTEHLCTI 255
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q0CSR3|COG6_ASPTN Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=cog6 PE=3 SV=1
Length = 752
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111
+++K+ ++ ++ G+V E+ KR+ T+ L + M+K + + ++ V +E
Sbjct: 79 DVQKEVVDSNAEIVRDFGKVAEQLKRIGTVISSLNQTCEEMKKHIVLAKQDTTPVLEEAA 138
Query: 112 PLGHTCQKKEREYK-EALEAFN 132
L + QK+E E K + L+AF
Sbjct: 139 SLMN--QKREAETKQQLLDAFT 158
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 54 EKKKLEVREKVQAHLGRVEEETKRLATIRE----------ELEALADPMRKEVAVVRKKI 103
E+KK+E K++ L +EE KR+ + E E + L + +EV + +++I
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRI 470
Query: 104 DSVNKEL 110
D +NKEL
Sbjct: 471 DEINKEL 477
>sp|Q2FH88|SBCC_STAA3 Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain USA300)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 13 NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
N L L + S + S NL+ D++ + +R ++EE+E+K R+ + +E
Sbjct: 710 NDLELNEQSIEMEMSRLNLTDDND---IDEIIAWRGEQEELEQK----RDTYKKRYHEIE 762
Query: 73 EETKRLATIREELEAL-ADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131
E RL ++ ++ E L +D ++ E + + K++++ E + + CQ + + +
Sbjct: 763 MEIARLESLTKDKELLDSDKLKDEYELKKGKMNTLIDEYSAVHYQCQNNINKTQSIVSHI 822
Query: 132 NEKNKE 137
N N+E
Sbjct: 823 NYLNQE 828
>sp|Q5T7V8|GORAB_HUMAN RAB6-interacting golgin OS=Homo sapiens GN=GORAB PE=1 SV=1
Length = 394
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
R EE+ ++KK + + + R + ET +L I++EL+AL D + ++ ++R +ID
Sbjct: 179 RLMEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQA 238
Query: 107 N 107
+
Sbjct: 239 S 239
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2
Length = 1972
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100
S LTT A+EEE K +++ K ++ + +E K+ R+ELE L M E + +
Sbjct: 1009 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKMDGEASDLH 1068
Query: 101 KKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148
++I + ++ L KKE E + AL ++ +K + K+ E+
Sbjct: 1069 EQIADLQAQIAELKMQLAKKEEELQAALARLEDETSQKNNALKKIREL 1116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,868,525
Number of Sequences: 539616
Number of extensions: 2343530
Number of successful extensions: 22695
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 1573
Number of HSP's that attempted gapping in prelim test: 18308
Number of HSP's gapped (non-prelim): 5185
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)