Query 029490
Match_columns 192
No_of_seqs 30 out of 32
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 13:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04949 Transcrip_act: Transc 100.0 3.7E-74 8E-79 467.3 16.3 152 16-167 5-157 (159)
2 TIGR01837 PHA_granule_1 poly(h 95.0 0.076 1.7E-06 40.8 5.8 62 51-114 55-116 (118)
3 PF05597 Phasin: Poly(hydroxya 94.4 0.16 3.5E-06 40.4 6.5 62 51-114 68-129 (132)
4 PF10186 Atg14: UV radiation r 92.2 5.1 0.00011 32.2 13.9 51 63-117 57-107 (302)
5 TIGR02169 SMC_prok_A chromosom 90.1 6.8 0.00015 37.1 12.3 65 95-159 952-1016(1164)
6 PF10805 DUF2730: Protein of u 87.8 1.5 3.3E-05 33.1 5.2 53 62-116 35-87 (106)
7 PF08317 Spc7: Spc7 kinetochor 87.7 8.4 0.00018 33.5 10.4 92 59-153 177-268 (325)
8 PRK03918 chromosome segregatio 86.8 19 0.00041 34.0 12.8 65 84-149 297-361 (880)
9 TIGR03185 DNA_S_dndD DNA sulfu 86.5 19 0.00042 33.9 12.7 72 96-167 437-511 (650)
10 PF07200 Mod_r: Modifier of ru 84.8 7.2 0.00016 29.7 7.6 62 93-155 54-115 (150)
11 PF01920 Prefoldin_2: Prefoldi 80.3 16 0.00034 25.6 7.4 71 62-132 15-100 (106)
12 cd07623 BAR_SNX1_2 The Bin/Amp 80.1 20 0.00043 29.6 9.1 70 62-131 149-219 (224)
13 PRK03947 prefoldin subunit alp 79.9 15 0.00033 27.8 7.8 29 62-90 23-51 (140)
14 PF12325 TMF_TATA_bd: TATA ele 79.7 25 0.00053 27.7 9.1 58 90-147 47-107 (120)
15 smart00787 Spc7 Spc7 kinetocho 78.8 38 0.00082 30.2 11.0 101 62-165 175-275 (312)
16 PF10174 Cast: RIM-binding pro 78.4 49 0.0011 33.3 12.7 116 40-162 321-469 (775)
17 PRK03918 chromosome segregatio 78.3 62 0.0014 30.6 12.9 80 64-147 174-256 (880)
18 TIGR00606 rad50 rad50. This fa 77.8 50 0.0011 33.9 12.8 67 78-148 883-949 (1311)
19 cd07653 F-BAR_CIP4-like The F- 73.4 48 0.001 26.9 12.3 49 114-162 174-223 (251)
20 TIGR00606 rad50 rad50. This fa 72.5 1.2E+02 0.0027 31.2 14.4 106 42-151 858-966 (1311)
21 PF09325 Vps5: Vps5 C terminal 72.5 34 0.00074 27.0 8.2 25 101-125 163-187 (236)
22 TIGR02168 SMC_prok_B chromosom 71.3 94 0.002 29.4 12.5 12 99-110 864-875 (1179)
23 PF10241 KxDL: Uncharacterized 71.2 34 0.00074 25.1 7.4 60 40-110 21-80 (88)
24 cd07627 BAR_Vps5p The Bin/Amph 71.0 52 0.0011 26.9 9.2 39 61-99 142-180 (216)
25 TIGR00763 lon ATP-dependent pr 70.9 17 0.00037 35.2 7.3 62 45-107 196-260 (775)
26 PF01706 FliG_C: FliG C-termin 70.8 8.9 0.00019 28.3 4.3 46 60-110 56-101 (110)
27 PF07888 CALCOCO1: Calcium bin 69.3 42 0.00092 32.8 9.5 36 121-156 222-257 (546)
28 PRK10787 DNA-binding ATP-depen 68.4 12 0.00025 37.0 5.7 62 45-107 198-262 (784)
29 PRK02224 chromosome segregatio 68.1 1.2E+02 0.0025 29.1 12.9 49 77-125 628-684 (880)
30 KOG0996 Structural maintenance 67.7 59 0.0013 35.0 10.8 105 62-167 910-1028(1293)
31 PF10146 zf-C4H2: Zinc finger- 65.7 69 0.0015 27.6 9.2 73 42-118 2-77 (230)
32 KOG0239 Kinesin (KAR3 subfamil 65.7 1E+02 0.0022 30.5 11.3 85 63-147 200-294 (670)
33 PRK02224 chromosome segregatio 65.4 1.3E+02 0.0028 28.8 12.4 40 46-85 319-358 (880)
34 COG1579 Zn-ribbon protein, pos 65.0 98 0.0021 27.2 12.8 80 42-126 11-93 (239)
35 TIGR02169 SMC_prok_A chromosom 64.6 1.4E+02 0.0029 28.7 12.6 12 102-113 449-460 (1164)
36 PF10186 Atg14: UV radiation r 63.2 79 0.0017 25.5 11.3 15 153-167 143-157 (302)
37 PF05278 PEARLI-4: Arabidopsis 61.8 50 0.0011 29.7 7.9 84 64-154 154-246 (269)
38 COG1196 Smc Chromosome segrega 59.4 2E+02 0.0044 29.4 12.5 65 98-162 946-1013(1163)
39 PRK11115 transcriptional regul 58.5 92 0.002 24.7 12.2 102 47-151 55-166 (236)
40 COG1340 Uncharacterized archae 58.2 82 0.0018 28.7 8.7 64 90-153 30-93 (294)
41 PF10168 Nup88: Nuclear pore c 57.6 2.1E+02 0.0045 28.5 12.8 95 37-136 539-649 (717)
42 PHA02562 46 endonuclease subun 57.4 1.4E+02 0.0031 26.6 12.6 92 49-144 307-401 (562)
43 KOG0979 Structural maintenance 57.3 85 0.0018 33.3 9.6 94 60-168 256-349 (1072)
44 cd07664 BAR_SNX2 The Bin/Amphi 57.0 99 0.0022 26.4 8.7 65 42-106 131-204 (234)
45 PF15035 Rootletin: Ciliary ro 54.9 60 0.0013 26.9 6.8 64 67-134 65-135 (182)
46 PF11414 Suppressor_APC: Adeno 54.5 17 0.00037 27.2 3.3 55 60-114 29-83 (84)
47 cd07673 F-BAR_FCHO2 The F-BAR 54.4 1.4E+02 0.0031 25.6 12.8 84 65-162 126-211 (269)
48 smart00766 DnaG_DnaB_bind DNA 53.2 26 0.00055 23.5 3.7 41 118-158 79-122 (125)
49 PF07956 DUF1690: Protein of U 52.1 1.1E+02 0.0024 24.5 7.8 73 58-133 34-125 (142)
50 PF00769 ERM: Ezrin/radixin/mo 51.5 1.5E+02 0.0033 25.2 9.4 77 47-123 15-104 (246)
51 PF03332 PMM: Eukaryotic phosp 51.4 19 0.00041 31.4 3.5 39 110-151 103-141 (220)
52 PF10226 DUF2216: Uncharacteri 50.3 94 0.002 27.1 7.5 20 48-67 17-36 (195)
53 cd00584 Prefoldin_alpha Prefol 50.3 1E+02 0.0022 22.8 7.5 71 62-133 16-94 (129)
54 PF05529 Bap31: B-cell recepto 50.1 52 0.0011 26.2 5.6 40 85-124 152-191 (192)
55 PF04156 IncA: IncA protein; 49.3 1.3E+02 0.0027 23.6 9.1 42 95-136 124-165 (191)
56 KOG0250 DNA repair protein RAD 48.2 2.8E+02 0.006 29.7 11.6 55 55-109 295-352 (1074)
57 PF10498 IFT57: Intra-flagella 47.8 2E+02 0.0044 26.3 9.6 74 78-151 236-309 (359)
58 cd07665 BAR_SNX1 The Bin/Amphi 46.6 1.7E+02 0.0036 25.3 8.5 38 62-99 159-196 (234)
59 TIGR01834 PHA_synth_III_E poly 46.2 15 0.00032 33.5 2.2 35 84-118 279-313 (320)
60 PF08614 ATG16: Autophagy prot 45.9 1.4E+02 0.003 24.1 7.5 75 66-151 113-187 (194)
61 PF09278 MerR-DNA-bind: MerR, 45.0 48 0.001 21.6 4.0 31 58-88 35-65 (65)
62 cd07617 BAR_Endophilin_B2 The 44.7 1.8E+02 0.004 25.2 8.4 88 75-169 102-201 (220)
63 COG0466 Lon ATP-dependent Lon 44.7 80 0.0017 32.4 7.1 56 49-105 203-261 (782)
64 COG3352 FlaC Putative archaeal 44.7 1.8E+02 0.0038 24.8 8.1 87 57-147 49-140 (157)
65 cd07625 BAR_Vps17p The Bin/Amp 44.2 74 0.0016 27.4 6.0 60 41-100 133-195 (230)
66 cd07655 F-BAR_PACSIN The F-BAR 43.9 2E+02 0.0043 24.3 10.2 63 93-162 167-229 (258)
67 KOG2391 Vacuolar sorting prote 43.4 2.4E+02 0.0052 26.8 9.5 65 41-108 210-274 (365)
68 cd01279 HTH_HspR-like Helix-Tu 43.0 26 0.00056 25.6 2.6 32 64-95 67-98 (98)
69 TIGR00634 recN DNA repair prot 41.7 1.8E+02 0.0038 27.2 8.4 26 63-88 288-313 (563)
70 TIGR02135 phoU_full phosphate 41.1 1.5E+02 0.0033 22.2 10.0 95 45-142 42-147 (212)
71 cd07651 F-BAR_PombeCdc15_like 41.0 2E+02 0.0044 23.5 13.6 59 104-162 153-211 (236)
72 PF09712 PHA_synth_III_E: Poly 40.5 19 0.00041 31.6 1.9 31 84-114 262-292 (293)
73 TIGR00207 fliG flagellar motor 39.7 66 0.0014 28.6 5.1 47 59-110 274-320 (338)
74 KOG3915 Transcription regulato 39.6 1.6E+02 0.0034 29.5 8.0 78 36-140 509-590 (641)
75 PRK11637 AmiB activator; Provi 39.4 2.8E+02 0.0061 24.8 9.2 29 94-122 96-124 (428)
76 PF06705 SF-assemblin: SF-asse 38.7 2.3E+02 0.005 23.6 12.2 67 45-111 60-127 (247)
77 TIGR00293 prefoldin, archaeal 38.3 1.1E+02 0.0023 22.6 5.4 29 62-90 16-44 (126)
78 cd00890 Prefoldin Prefoldin is 38.0 1.5E+02 0.0033 21.3 6.9 28 63-90 17-44 (129)
79 PRK05686 fliG flagellar motor 37.8 71 0.0015 28.0 5.0 47 59-110 277-323 (339)
80 PRK04778 septation ring format 37.4 3.6E+02 0.0078 25.4 13.2 118 45-165 387-521 (569)
81 cd07648 F-BAR_FCHO The F-BAR ( 37.2 2.4E+02 0.0052 23.4 13.3 85 66-164 120-206 (261)
82 PF14379 Myb_CC_LHEQLE: MYB-CC 36.9 68 0.0015 22.6 3.8 30 55-84 9-45 (51)
83 PF15346 ARGLU: Arginine and g 36.7 99 0.0022 25.6 5.4 43 40-82 61-103 (149)
84 COG4942 Membrane-bound metallo 36.7 2.3E+02 0.0049 27.1 8.4 33 94-126 66-98 (420)
85 PRK01156 chromosome segregatio 36.2 4.1E+02 0.009 25.8 13.0 13 71-83 624-636 (895)
86 KOG3091 Nuclear pore complex, 34.3 1.4E+02 0.003 29.4 6.7 42 70-111 387-428 (508)
87 COG4026 Uncharacterized protei 34.1 2.4E+02 0.0053 25.9 7.8 31 123-153 136-166 (290)
88 PF14712 Snapin_Pallidin: Snap 33.8 1.7E+02 0.0037 20.6 7.8 70 42-111 8-81 (92)
89 PF05667 DUF812: Protein of un 33.6 3.7E+02 0.0081 26.3 9.5 74 94-167 349-432 (594)
90 PF05700 BCAS2: Breast carcino 33.0 1.5E+02 0.0033 24.6 6.0 103 35-156 98-202 (221)
91 TIGR01795 CM_mono_cladeE monof 33.0 27 0.00058 26.0 1.4 20 94-113 3-22 (94)
92 PRK10203 hypothetical protein; 32.4 96 0.0021 24.8 4.5 61 67-128 52-115 (122)
93 COG1605 PheA Chorismate mutase 32.3 33 0.00071 25.4 1.8 39 90-128 4-45 (101)
94 cd07647 F-BAR_PSTPIP The F-BAR 32.3 2.9E+02 0.0063 22.9 13.6 62 92-160 151-212 (239)
95 PF00261 Tropomyosin: Tropomyo 32.2 3E+02 0.0064 22.9 8.1 56 59-118 103-158 (237)
96 PF14662 CCDC155: Coiled-coil 32.0 3.4E+02 0.0074 23.6 8.5 83 62-151 25-110 (193)
97 PF03961 DUF342: Protein of un 32.0 2.7E+02 0.0058 25.2 7.8 31 118-148 371-401 (451)
98 PF04645 DUF603: Protein of un 31.9 63 0.0014 28.0 3.6 21 92-112 110-130 (181)
99 KOG4074 Leucine zipper nuclear 31.8 1.1E+02 0.0024 29.0 5.5 49 105-158 158-213 (383)
100 COG1579 Zn-ribbon protein, pos 31.7 3.6E+02 0.0078 23.8 10.5 26 94-119 96-121 (239)
101 PRK04778 septation ring format 30.9 4.6E+02 0.01 24.7 9.9 46 96-141 350-395 (569)
102 cd07672 F-BAR_PSTPIP2 The F-BA 30.6 3.4E+02 0.0074 23.1 11.0 57 72-136 131-189 (240)
103 COG2433 Uncharacterized conser 30.5 6E+02 0.013 25.9 10.5 39 83-125 439-477 (652)
104 KOG0018 Structural maintenance 30.3 3.4E+02 0.0074 29.3 9.1 56 11-73 635-690 (1141)
105 PF00456 Transketolase_N: Tran 30.0 1.3E+02 0.0028 26.9 5.4 55 92-146 263-327 (332)
106 KOG3800 Predicted E3 ubiquitin 29.5 1.1E+02 0.0023 28.3 4.9 74 86-170 58-134 (300)
107 COG1283 NptA Na+/phosphate sym 29.5 5.6E+02 0.012 25.2 10.9 84 69-155 393-486 (533)
108 KOG0161 Myosin class II heavy 28.8 9.1E+02 0.02 27.5 12.8 113 36-149 991-1103(1930)
109 PRK07194 fliG flagellar motor 28.8 1.2E+02 0.0027 26.8 5.0 47 59-110 271-317 (334)
110 PHA02109 hypothetical protein 28.3 1E+02 0.0022 27.4 4.4 54 74-128 169-227 (233)
111 cd00179 SynN Syntaxin N-termin 28.1 2.5E+02 0.0054 20.8 8.9 55 79-133 40-106 (151)
112 PF05667 DUF812: Protein of un 27.9 2.6E+02 0.0057 27.3 7.5 93 71-167 403-511 (594)
113 PF07352 Phage_Mu_Gam: Bacteri 27.5 3E+02 0.0064 21.4 7.2 61 71-138 5-65 (149)
114 PF12777 MT: Microtubule-bindi 27.3 2.2E+02 0.0047 25.1 6.2 78 97-176 238-319 (344)
115 smart00498 FH2 Formin Homology 26.9 2.3E+02 0.0049 25.6 6.4 54 83-137 296-353 (432)
116 PF03993 DUF349: Domain of Unk 26.9 2E+02 0.0043 19.1 4.9 47 107-153 4-51 (77)
117 PRK06285 chorismate mutase; Pr 26.8 34 0.00073 25.1 1.1 21 93-113 6-26 (96)
118 cd00176 SPEC Spectrin repeats, 26.8 2.5E+02 0.0054 20.3 5.8 36 94-129 72-107 (213)
119 PRK09546 zntB zinc transporter 26.7 4.1E+02 0.0088 22.7 10.9 49 71-119 159-207 (324)
120 PF06216 RTBV_P46: Rice tungro 26.7 1.3E+02 0.0028 28.2 4.9 48 47-94 67-117 (389)
121 PRK01156 chromosome segregatio 26.4 6.1E+02 0.013 24.7 13.4 20 95-114 364-383 (895)
122 TIGR01808 CM_M_hiGC-arch monof 26.4 31 0.00068 24.5 0.8 19 95-113 1-19 (74)
123 PRK07248 hypothetical protein; 26.4 31 0.00067 24.6 0.8 44 96-139 3-50 (87)
124 cd04779 HTH_MerR-like_sg4 Heli 25.5 2.9E+02 0.0062 21.7 6.1 48 93-149 80-127 (134)
125 COG2096 cob(I)alamin adenosylt 25.2 2.7E+02 0.0059 23.9 6.3 56 93-149 87-160 (184)
126 PF02996 Prefoldin: Prefoldin 25.1 87 0.0019 22.5 2.9 28 63-90 7-34 (120)
127 PF11932 DUF3450: Protein of u 24.5 2.2E+02 0.0047 23.7 5.5 82 62-150 52-141 (251)
128 PRK01433 hscA chaperone protei 24.4 3.7E+02 0.0081 25.7 7.7 24 49-72 499-522 (595)
129 TIGR01807 CM_P2 chorismate mut 24.4 34 0.00074 23.9 0.7 31 97-127 2-35 (76)
130 PF00038 Filament: Intermediat 24.2 4.2E+02 0.0092 22.1 12.0 90 41-134 169-263 (312)
131 TIGR02338 gimC_beta prefoldin, 24.2 3E+02 0.0065 20.4 7.3 63 63-125 21-98 (110)
132 TIGR01803 CM-like chorismate m 24.1 41 0.00088 23.9 1.0 17 97-113 2-18 (82)
133 PRK10622 pheA bifunctional cho 24.1 44 0.00096 30.3 1.5 20 92-111 3-22 (386)
134 PF03954 Lectin_N: Hepatic lec 24.1 1.6E+02 0.0035 24.4 4.6 54 78-131 64-117 (138)
135 PRK11032 hypothetical protein; 23.8 1.4E+02 0.0029 24.9 4.1 54 60-116 11-65 (160)
136 KOG0225 Pyruvate dehydrogenase 23.6 47 0.001 31.6 1.6 41 87-127 293-338 (394)
137 PLN03229 acetyl-coenzyme A car 22.9 8.7E+02 0.019 25.2 10.5 16 51-66 511-526 (762)
138 PF07813 LTXXQ: LTXXQ motif fa 22.8 2.5E+02 0.0055 19.0 5.3 90 65-160 10-99 (100)
139 PF05377 FlaC_arch: Flagella a 22.7 80 0.0017 22.5 2.3 21 90-110 17-37 (55)
140 TIGR02680 conserved hypothetic 22.6 6.4E+02 0.014 26.7 9.5 97 62-159 233-333 (1353)
141 TIGR01799 CM_T chorismate muta 22.6 31 0.00067 24.5 0.2 44 97-140 2-49 (83)
142 PRK12595 bifunctional 3-deoxy- 22.5 51 0.0011 29.8 1.6 22 92-113 2-23 (360)
143 KOG0161 Myosin class II heavy 22.5 6E+02 0.013 28.8 9.6 85 70-154 891-975 (1930)
144 TIGR01805 CM_mono_grmpos monof 22.4 31 0.00067 24.3 0.1 31 97-127 2-35 (81)
145 KOG3335 Predicted coiled-coil 22.3 2E+02 0.0044 24.9 5.0 63 37-118 89-152 (181)
146 KOG0810 SNARE protein Syntaxin 22.2 5.8E+02 0.013 23.0 9.5 100 41-140 33-155 (297)
147 PF09755 DUF2046: Uncharacteri 22.1 3.7E+02 0.008 24.8 6.9 32 75-106 112-147 (310)
148 PRK09239 chorismate mutase; Pr 22.1 54 0.0012 24.9 1.4 33 95-127 11-46 (104)
149 PRK11199 tyrA bifunctional cho 21.5 51 0.0011 29.1 1.4 36 92-127 1-39 (374)
150 KOG0996 Structural maintenance 21.5 1.1E+03 0.024 26.0 13.7 116 34-163 778-912 (1293)
151 COG4026 Uncharacterized protei 21.4 4.8E+02 0.01 24.1 7.4 60 51-110 145-207 (290)
152 PF14523 Syntaxin_2: Syntaxin- 21.2 3E+02 0.0065 19.2 7.6 19 115-133 71-89 (102)
153 PF06102 DUF947: Domain of unk 20.5 4.6E+02 0.0099 21.4 6.5 43 58-100 78-120 (168)
154 smart00502 BBC B-Box C-termina 20.5 3E+02 0.0065 19.0 9.2 38 112-149 65-102 (127)
155 PRK06569 F0F1 ATP synthase sub 20.4 4.7E+02 0.01 21.6 6.6 39 63-101 45-83 (155)
156 PF07888 CALCOCO1: Calcium bin 20.4 8.5E+02 0.018 24.2 12.7 54 64-117 176-236 (546)
157 COG1747 Uncharacterized N-term 20.1 1.2E+02 0.0026 30.8 3.6 75 103-191 327-403 (711)
No 1
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=100.00 E-value=3.7e-74 Score=467.26 Aligned_cols=152 Identities=70% Similarity=0.969 Sum_probs=145.5
Q ss_pred hhccCCcccccCCCCCCcc-hHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHH
Q 029490 16 MLQQSSGNLSFSSSNLSKD-DEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRK 94 (192)
Q Consensus 16 ~~~~~sg~~~~~~s~~~~e-eEe~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRK 94 (192)
..++++|+++++++++.++ +++|||||+|+|+|||+|||||||+||+|||+|||||||+|||||+||+|||+|+|||||
T Consensus 5 ~~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~Rk 84 (159)
T PF04949_consen 5 LRVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRK 84 (159)
T ss_pred hhcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHH
Confidence 4557888888877766655 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHHHHHHH
Q 029490 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLI 167 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEEL~kl~ 167 (192)
||++||||||+|||+|||||++|||||+|||+||+||||||+||++||++|||||+||||+|||||||||+-|
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEI 157 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976
No 2
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=95.00 E-value=0.076 Score=40.77 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccch
Q 029490 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (192)
Q Consensus 51 EEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLg 114 (192)
++++..--+|+++.+.+.+.+|.-..+ .+..=|..|+-|++.||..+++|||.+...|..|.
T Consensus 55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556667777777777765553 56778999999999999999999999998887664
No 3
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=94.42 E-value=0.16 Score=40.42 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccch
Q 029490 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (192)
Q Consensus 51 EEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLg 114 (192)
++++..--.|++++..+++++|.--.. .+..-|..|+=|+|+||..++.|||.++++|.-|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444466667777777777754321 23445889999999999999999999999886553
No 4
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.25 E-value=5.1 Score=32.24 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=33.4
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhH
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC 117 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsC 117 (192)
.++..-..+++...|++.|+.+++. .++++..-|++|+.....|......-
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~----~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIER----LRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777788888777765 46777777777777766666555443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.10 E-value=6.8 Score=37.12 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhh
Q 029490 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRK 159 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkK 159 (192)
..+.++++|+.++++|+-+|....+-..+|.++.+-|+...+...+|.+..-.|..--++++-++
T Consensus 952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999988889999999999999999999999887766665555555444
No 6
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.76 E-value=1.5 Score=33.05 Aligned_cols=53 Identities=28% Similarity=0.488 Sum_probs=39.2
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhh
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqs 116 (192)
+.+.+--.++..-.+||+.+-.+++.| |++++|..++..|..++.+++-+...
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333334445556678999999999988 88999988888888888777655443
No 7
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.68 E-value=8.4 Score=33.51 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHH
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK 138 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEK 138 (192)
++..++.+....++.+..+|...-.| +++-.+.|+..+|..|..++-+|.-..+.-...+.+...--+..++.+.+|
T Consensus 177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667776666666555 555566888889999888888888887777777888777777788888888
Q ss_pred HHHHHHHHHhhhhhh
Q 029490 139 VQLITKLMEVSVKYF 153 (192)
Q Consensus 139 a~LVtkLmELv~ESE 153 (192)
.++...+-++=.--+
T Consensus 254 ~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 254 QELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777766543333
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=86.82 E-value=19 Score=34.03 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=35.0
Q ss_pred HHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 84 ELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
.+..+-+|..+.+..+++.++.+..++.-|-..-..-+..++++-+.+++. +++...+..|..+.
T Consensus 297 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~-~~~~~~~~~l~~~~ 361 (880)
T PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL-KELEKRLEELEERH 361 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344444577777777777777777766655544444444444444444433 33444444444333
No 9
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.50 E-value=19 Score=33.88 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhh-hhhcchhhHHHHHHHH
Q 029490 96 VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF--NEKNKEKVQLITKLMEVSVK-YFSCSDRKMQELHFLI 167 (192)
Q Consensus 96 V~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAf--NEKnkEKa~LVtkLmELv~E-SErlRmkKLEEL~kl~ 167 (192)
++.+...+...+.+++-+-.....-+++++.--++. |.+.........++.+++.+ .+.++-++...|.+.+
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~ 511 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREKLLERKLQQLEEEI 511 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444443332222 23333344444555555543 2445555566665554
No 10
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=84.79 E-value=7.2 Score=29.71 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhc
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSC 155 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErl 155 (192)
..++...|..|...-.+++.|...|+.|+++|+.+...||.-. -++.|-+..-+.=.+||.+
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEEL 115 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888999999999999999999999999864 3333444444444444443
No 11
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.28 E-value=16 Score=25.59 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=49.4
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchh--------------HH-HHHHHHHHhhhhhhccccchhhHhhhHHHHHH
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPM--------------RK-EVAVVRKKIDSVNKELKPLGHTCQKKEREYKE 126 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPm--------------RK-EV~~VRKkID~vNreLKPLgqsCqKKEkEYKE 126 (192)
..|.++++.++.+-+++....+||+.+.|+. +. =+..+.++++.+..+++-|-......++++++
T Consensus 15 ~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 15 QQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999998771 12 23456667777777776666665556666655
Q ss_pred HHHHhh
Q 029490 127 ALEAFN 132 (192)
Q Consensus 127 aLEAfN 132 (192)
.=..++
T Consensus 95 ~~~~l~ 100 (106)
T PF01920_consen 95 LKKKLY 100 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 12
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=80.05 E-value=20 Score=29.65 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHH-HHHhhhhhhccccchhhHhhhHHHHHHHHHHh
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~V-RKkID~vNreLKPLgqsCqKKEkEYKEaLEAf 131 (192)
|||...---|.+...+....+.+.+.+++-+++|+... +.|+...+.-|.-...+=-.-.++.-++.|+|
T Consensus 149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~ 219 (224)
T cd07623 149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAF 219 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455556677788888888888888888876 45555555555544444333344444444443
No 13
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=79.85 E-value=15 Score=27.79 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=20.7
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccc
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALAD 90 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laD 90 (192)
+.++++++.++.....+....+.|+.+..
T Consensus 23 ~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 23 EALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677777777777777777777776653
No 14
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.75 E-value=25 Score=27.73 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHhhhhh---hccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 029490 90 DPMRKEVAVVRKKIDSVN---KELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME 147 (192)
Q Consensus 90 DPmRKEV~~VRKkID~vN---reLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmE 147 (192)
|-++.|+-..-+..|.++ .++.-|-.-++..+..|.-+|+.|-||+-+=-.|=..+.+
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 444555555555554442 3344555666777889999999999988665555444433
No 15
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.83 E-value=38 Score=30.18 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=72.3
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHH
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQL 141 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~L 141 (192)
..+......+..|...|.++-.|++... .-|...+|.+|..++.++.+.-+.-.-++.+..+--..-++.+..|.++
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d---~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCD---PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555554432 3588899999999999999999998889999888888889999999999
Q ss_pred HHHHHHhhhhhhhcchhhHHHHHH
Q 029490 142 ITKLMEVSVKYFSCSDRKMQELHF 165 (192)
Q Consensus 142 VtkLmELv~ESErlRmkKLEEL~k 165 (192)
.+.+.++=.-.+.+|-=---|++.
T Consensus 252 ~~~I~~ae~~~~~~r~~t~~Ei~~ 275 (312)
T smart00787 252 NTEIAEAEKKLEQCRGFTFKEIEK 275 (312)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999998877666666433333333
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.43 E-value=49 Score=33.33 Aligned_cols=116 Identities=31% Similarity=0.467 Sum_probs=71.9
Q ss_pred HHHHhhh----hhhHHHHHHHHHHH-------------HHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 029490 40 RSALTTF----RAKEEEIEKKKLEV-------------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKK 102 (192)
Q Consensus 40 rsAls~F----~AKEEEIErkKmEV-------------RekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKk 102 (192)
|.=|..+ .|++.+.+.---+| =+|-++++..+++|--|++-=-++|-.+-|-.-.+|..+++|
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 56666655544443 345556666666666555443333444445555689999999
Q ss_pred hhhhhhccccchhhHhhhHHHHHH----------------HHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 103 IDSVNKELKPLGHTCQKKEREYKE----------------ALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 103 ID~vNreLKPLgqsCqKKEkEYKE----------------aLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
||.+...|+ .|++...+ |++.+.+-+.+|..++..|-++=..+++-+.-.++-
T Consensus 401 ie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~ 469 (775)
T PF10174_consen 401 IENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELET 469 (775)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887775 34444444 455555888888888888888776666555444443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=78.33 E-value=62 Score=30.64 Aligned_cols=80 Identities=28% Similarity=0.341 Sum_probs=46.0
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHH---HHHHHHHHhhhhhhHHHH
Q 029490 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKER---EYKEALEAFNEKNKEKVQ 140 (192)
Q Consensus 64 VqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEk---EYKEaLEAfNEKnkEKa~ 140 (192)
+..++..++.....+..|.+.|. ..+++++.+.+.|..+..++..+....+..+. .+.++.+.|+..+++...
T Consensus 174 ~~~~~~~l~~~l~~l~~i~~~l~----~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~ 249 (880)
T PRK03918 174 IKRRIERLEKFIKRTENIEELIK----EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455544443 34666777777777777777777766655544 455666666665555555
Q ss_pred HHHHHHH
Q 029490 141 LITKLME 147 (192)
Q Consensus 141 LVtkLmE 147 (192)
+-..+-.
T Consensus 250 l~~~~~~ 256 (880)
T PRK03918 250 LEGSKRK 256 (880)
T ss_pred HHHHHHH
Confidence 5444333
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.82 E-value=50 Score=33.91 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=44.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 029490 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 78 La~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL 148 (192)
...+.++|+.+ ..++...+..|..+..+|-||.+.-.+...+|.+.....+.+..+...-++.+-..
T Consensus 883 r~~le~~L~el----~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1311)
T TIGR00606 883 RQQFEEQLVEL----STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEK 949 (1311)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 46778888888888888888888888888888777777766665555555444333
No 19
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=73.41 E-value=48 Score=26.92 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=33.4
Q ss_pred hhhHhhhHHHHHHHHHHhhhhhhHH-HHHHHHHHHhhhhhhhcchhhHHH
Q 029490 114 GHTCQKKEREYKEALEAFNEKNKEK-VQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 114 gqsCqKKEkEYKEaLEAfNEKnkEK-a~LVtkLmELv~ESErlRmkKLEE 162 (192)
.+.|.+-+.+|..++.++|.-.+.- -..+..+++-+..-|..|+..|-+
T Consensus 174 ~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~ 223 (251)
T cd07653 174 TQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVE 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Confidence 5678889999999999998865433 344555555555556666555544
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.49 E-value=1.2e+02 Score=31.22 Aligned_cols=106 Identities=13% Similarity=0.256 Sum_probs=70.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccc---hhHHHHHHHHHHhhhhhhccccchhhHh
Q 029490 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALAD---PMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (192)
Q Consensus 42 Als~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laD---PmRKEV~~VRKkID~vNreLKPLgqsCq 118 (192)
.++..+++..++...+..+...++ +...-..+|..+.++++.+.. -...++.-+..+++.+..++.-+-....
T Consensus 858 eI~~Lq~ki~el~~~klkl~~~l~----~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 858 QIQHLKSKTNELKSEKLQIGTNLQ----RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444 333334455555555555433 2567888888899999999988889999
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 029490 119 KKEREYKEALEAFNEKNKEKVQLITKLMEVSVK 151 (192)
Q Consensus 119 KKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~E 151 (192)
.++.+....+..|+..-..-..+...+-+.+..
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~ 966 (1311)
T TIGR00606 934 TSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD 966 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999888888888888777766666666655543
No 21
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=72.46 E-value=34 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=10.5
Q ss_pred HHhhhhhhccccchhhHhhhHHHHH
Q 029490 101 KKIDSVNKELKPLGHTCQKKEREYK 125 (192)
Q Consensus 101 KkID~vNreLKPLgqsCqKKEkEYK 125 (192)
.|++.++.++.-+.+.+...+++|.
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=71.33 E-value=94 Score=29.42 Aligned_cols=12 Identities=25% Similarity=0.518 Sum_probs=4.4
Q ss_pred HHHHhhhhhhcc
Q 029490 99 VRKKIDSVNKEL 110 (192)
Q Consensus 99 VRKkID~vNreL 110 (192)
..+.|+.++.++
T Consensus 864 ~~~~~~~l~~~~ 875 (1179)
T TIGR02168 864 LEELIEELESEL 875 (1179)
T ss_pred HHhhHHHHHHHH
Confidence 333333333333
No 23
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=71.17 E-value=34 Score=25.06 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=37.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 40 rsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
...+..|.++-+++..---....++...-.+.+.-|+-|. -|++++..|.|||..++..|
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~-----------~mK~DLd~i~krir~lk~kl 80 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLK-----------EMKKDLDYIFKRIRSLKAKL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777655444444444433334444443333 37888999999999998765
No 24
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=71.01 E-value=52 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHH
Q 029490 61 REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV 99 (192)
Q Consensus 61 RekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~V 99 (192)
.+||...-..+.+...+......+.+.+++-+++||...
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777777765
No 25
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=70.88 E-value=17 Score=35.17 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=46.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhHHHh---hhHHHHHHHHHhccchhHHHHHHHHHHhhhhh
Q 029490 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (192)
Q Consensus 45 ~F~AKEEEIErkKmEVRekVqaqLGRvEeet---kRLa~IreELE~laDPmRKEV~~VRKkID~vN 107 (192)
.+=.+|-|+-+-+.+++++|+.++.+-..|- ..|..|++||-... .--.|++.+|+||+..+
T Consensus 196 ~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~-~~~~~~~~~~~k~~~~~ 260 (775)
T TIGR00763 196 ELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEK-DDKDELEKLKEKLEELK 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CchhHHHHHHHHHHhcC
Confidence 3444567777788899999999998766553 36778999995443 44579999999998765
No 26
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=70.80 E-value=8.9 Score=28.29 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 60 VRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
++++|..-++ .++=..|++|++.++.+..++|...|+.|=..=|+|
T Consensus 56 ~~~~il~nms-----~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l 101 (110)
T PF01706_consen 56 LREKILSNMS-----KRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRL 101 (110)
T ss_dssp HHHHHHTTS------HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889988875 244557999999999999999999999986554444
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.28 E-value=42 Score=32.79 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 029490 121 EREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCS 156 (192)
Q Consensus 121 EkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlR 156 (192)
-+++.+-+..++.+.+|+-.+..++.++..+-|...
T Consensus 222 i~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 222 IRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888888888888887766555544
No 28
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=68.44 E-value=12 Score=36.98 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhHHHh---hhHHHHHHHHHhccchhHHHHHHHHHHhhhhh
Q 029490 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDSVN 107 (192)
Q Consensus 45 ~F~AKEEEIErkKmEVRekVqaqLGRvEeet---kRLa~IreELE~laDPmRKEV~~VRKkID~vN 107 (192)
.+=.+|-++-+-+.++.++|+.++.+-..|- ..|..|++|| |..|+--.|+..+|+||+..+
T Consensus 198 ~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~el-g~~~~~~~~~~~~~~~~~~~~ 262 (784)
T PRK10787 198 AMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL-GEMDDAPDENEALKRKIDAAK 262 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccc-cCCCcchhHHHHHHHHHHhcC
Confidence 3446677777888899999999998766553 4678888999 455666679999999998765
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=68.09 E-value=1.2e+02 Score=29.15 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcc--------chhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHH
Q 029490 77 RLATIREELEALA--------DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYK 125 (192)
Q Consensus 77 RLa~IreELE~la--------DPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYK 125 (192)
+|+.+|+.+..+. ++.+.+...+++.++.++..|..+...+....+.|.
T Consensus 628 ~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 628 RLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544431 244455555555666666665555555555554443
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.74 E-value=59 Score=34.95 Aligned_cols=105 Identities=26% Similarity=0.353 Sum_probs=72.7
Q ss_pred HHHHHHhhhhHHHhhhHHHHHH-------HHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhh
Q 029490 62 EKVQAHLGRVEEETKRLATIRE-------ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~Ire-------ELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEK 134 (192)
++|+.||+.++.+.+++..+-+ -+.+--.-..+++...++++|.++-+++.+-.---.-+.+|+||.++--|-
T Consensus 910 ~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 910 EKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666544322 112222245688888999999999999999988888999999999999998
Q ss_pred hhHHHHHHHHHHHhhhhhhhcchh-------hHHHHHHHH
Q 029490 135 NKEKVQLITKLMEVSVKYFSCSDR-------KMQELHFLI 167 (192)
Q Consensus 135 nkEKa~LVtkLmELv~ESErlRmk-------KLEEL~kl~ 167 (192)
+++=.+++..+ +-+.+++--.+. |+++.+..+
T Consensus 990 k~~~~~~k~~~-e~i~k~~~~lk~~rId~~~K~e~~~~~l 1028 (1293)
T KOG0996|consen 990 KKELRDLKSEL-ENIKKSENELKAERIDIENKLEAINGEL 1028 (1293)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 88888877664 445555443333 566665554
No 31
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.75 E-value=69 Score=27.62 Aligned_cols=73 Identities=26% Similarity=0.344 Sum_probs=54.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHH---HHhhhhhhccccchhhHh
Q 029490 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR---KKIDSVNKELKPLGHTCQ 118 (192)
Q Consensus 42 Als~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VR---KkID~vNreLKPLgqsCq 118 (192)
+|.-.+.|-.+.++.|-+|. ..++.++.|.+.|.+.+.|.+.|-+--+.=|+.+| -=|+.++..+|-+-..|.
T Consensus 2 ~i~~ir~K~~~lek~k~~i~----~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEIL----QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889998876665 45678999999999999999999887776666654 456666666655544443
No 32
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=65.70 E-value=1e+02 Score=30.55 Aligned_cols=85 Identities=26% Similarity=0.388 Sum_probs=60.3
Q ss_pred HHHHHhhhhHHHhhhHHHH----------HHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhh
Q 029490 63 KVQAHLGRVEEETKRLATI----------REELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~I----------reELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfN 132 (192)
+...+|....+++..|+.. -.+|+.+.+-.++++..++..+...++.++-|-..|.++-+++.+++..++
T Consensus 200 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (670)
T KOG0239|consen 200 ELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESN 279 (670)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554 246677777777888888888888999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHH
Q 029490 133 EKNKEKVQLITKLME 147 (192)
Q Consensus 133 EKnkEKa~LVtkLmE 147 (192)
..-.+-+.+-..|.+
T Consensus 280 ~~~~~L~~~~~~l~~ 294 (670)
T KOG0239|consen 280 TLQSDLESLEENLVE 294 (670)
T ss_pred HHHHHHHHHHHHHHH
Confidence 774443333333333
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=65.39 E-value=1.3e+02 Score=28.79 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHH
Q 029490 46 FRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREEL 85 (192)
Q Consensus 46 F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreEL 85 (192)
+..+-++++....++++.+....|.++.-.+.+..+..++
T Consensus 319 l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~ 358 (880)
T PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444444444444333
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.95 E-value=98 Score=27.21 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=45.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhH---HHHHHHHHHhhhhhhccccchhhHh
Q 029490 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR---KEVAVVRKKIDSVNKELKPLGHTCQ 118 (192)
Q Consensus 42 Als~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmR---KEV~~VRKkID~vNreLKPLgqsCq 118 (192)
+|+.....-+.++.+.-+.++-+.+...-.+.--+++..+..|+|.|-+-.+ .|+..+|+||+..-..| +-.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-----~~v 85 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----SAV 85 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc
Confidence 4445555555566665566666666666666666777777777776654433 25555566655543333 344
Q ss_pred hhHHHHHH
Q 029490 119 KKEREYKE 126 (192)
Q Consensus 119 KKEkEYKE 126 (192)
+.++||..
T Consensus 86 ~~~~e~~a 93 (239)
T COG1579 86 KDERELRA 93 (239)
T ss_pred ccHHHHHH
Confidence 55566543
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=64.59 E-value=1.4e+02 Score=28.70 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=4.5
Q ss_pred Hhhhhhhccccc
Q 029490 102 KIDSVNKELKPL 113 (192)
Q Consensus 102 kID~vNreLKPL 113 (192)
.|+.+++++..+
T Consensus 449 ~l~~l~~~~~~~ 460 (1164)
T TIGR02169 449 EIKKQEWKLEQL 460 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 36
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.21 E-value=79 Score=25.49 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=8.4
Q ss_pred hhcchhhHHHHHHHH
Q 029490 153 FSCSDRKMQELHFLI 167 (192)
Q Consensus 153 ErlRmkKLEEL~kl~ 167 (192)
.+.|...+.+|..+.
T Consensus 143 ~~~r~~l~~~l~~if 157 (302)
T PF10186_consen 143 ARRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345555666666643
No 37
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.76 E-value=50 Score=29.72 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=55.3
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHhccch--------hHH-HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhh
Q 029490 64 VQAHLGRVEEETKRLATIREELEALADP--------MRK-EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (192)
Q Consensus 64 VqaqLGRvEeetkRLa~IreELE~laDP--------mRK-EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEK 134 (192)
+-+.|+.+|..-=.+.-+|+=|+.+.+- ++. |.+..+++|.....||.-+-..|-++|++++++-+.+-
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~-- 231 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERIT-- 231 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4455555655544444444444333332 233 66777889999999999999999999999999988872
Q ss_pred hhHHHHHHHHHHHhhhhhhh
Q 029490 135 NKEKVQLITKLMEVSVKYFS 154 (192)
Q Consensus 135 nkEKa~LVtkLmELv~ESEr 154 (192)
..-.+|.+|=-+|-|
T Consensus 232 -----e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 232 -----EMKGRLGELEMESTR 246 (269)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 334456666555444
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=59.36 E-value=2e+02 Score=29.37 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=48.4
Q ss_pred HHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHH---HHHhhhhhhhcchhhHHH
Q 029490 98 VVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITK---LMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 98 ~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtk---LmELv~ESErlRmkKLEE 162 (192)
.++++|+.+.+++.-||..=-.-.-+|.++.+-|++-+.+...|... |.+.+.+=.+.+-..+.+
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~ 1013 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999998877777777788889999999999999998888654 445555555544444433
No 39
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=58.52 E-value=92 Score=24.74 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh---hHHHhhhHH---HHHHHHHhccchhHHHHHHHHHHhh----hhhhccccchhh
Q 029490 47 RAKEEEIEKKKLEVREKVQAHLGR---VEEETKRLA---TIREELEALADPMRKEVAVVRKKID----SVNKELKPLGHT 116 (192)
Q Consensus 47 ~AKEEEIErkKmEVRekVqaqLGR---vEeetkRLa---~IreELE~laDPmRKEV~~VRKkID----~vNreLKPLgqs 116 (192)
..++++|.+.-.++.+.+-..++. +....+++. .|-..||.+||=...=...+.+..+ .+-.+|..++..
T Consensus 55 ~~~e~~id~l~~~I~~~l~~~l~~~~~~~~d~~~~~~~~~i~~~lERIgD~~~nia~~~~~~~~~~~~~~~~~l~~l~~~ 134 (236)
T PRK11115 55 IEGDHKVNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKTIADLERIGDVADKIARTALEKFSQQHQPLLVSLESLGRH 134 (236)
T ss_pred HHChHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Confidence 345666666666776666665532 344445443 4467899999986544444444322 222345556666
Q ss_pred HhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 029490 117 CQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVK 151 (192)
Q Consensus 117 CqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~E 151 (192)
|. .-++.|.++|...+.++|.-|-..-+-+..
T Consensus 135 v~---~~l~~a~~a~~~~d~~~a~~i~~~d~~Id~ 166 (236)
T PRK11115 135 TI---QMLHDVLDAFARMDLDEAVRIYREDKKVDQ 166 (236)
T ss_pred HH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 65 467889999998888888777666555543
No 40
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.19 E-value=82 Score=28.71 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 029490 90 DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYF 153 (192)
Q Consensus 90 DPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESE 153 (192)
|-.++++..+|=+.|..|...+-+-.-.+-.=.++++.++-+++--.+.-.+..+|.+|..+..
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777666666655566666666666665556666666666555443
No 41
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.57 E-value=2.1e+02 Score=28.51 Aligned_cols=95 Identities=27% Similarity=0.451 Sum_probs=53.2
Q ss_pred HhhHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHH----HHHHHHhh
Q 029490 37 EMSRSALTTFRAK--------EEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEV----AVVRKKID 104 (192)
Q Consensus 37 e~srsAls~F~AK--------EEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV----~~VRKkID 104 (192)
++--.|...|+.. -++|+++--......+.||.++.+-..+...|++--+.|+|- -+++ +.+.||+|
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR-~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER-YEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5556777888742 233444433334444445555555555555555555666662 1222 34566666
Q ss_pred hh----hhccccchhhHhhhHHHHHHHHHHhhhhhh
Q 029490 105 SV----NKELKPLGHTCQKKEREYKEALEAFNEKNK 136 (192)
Q Consensus 105 ~v----NreLKPLgqsCqKKEkEYKEaLEAfNEKnk 136 (192)
.| |..+.+|. .-|+++++=|+.++++-+
T Consensus 618 ~vl~~l~~~~P~LS----~AEr~~~~EL~~~~~~l~ 649 (717)
T PF10168_consen 618 RVLQLLNSQLPVLS----EAEREFKKELERMKDQLQ 649 (717)
T ss_pred HHHHHHhccCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 55 33333333 359999999999998753
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.45 E-value=1.4e+02 Score=26.64 Aligned_cols=92 Identities=13% Similarity=0.265 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHH---HHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHH
Q 029490 49 KEEEIEKKKLEVREKVQ---AHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYK 125 (192)
Q Consensus 49 KEEEIErkKmEVRekVq---aqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYK 125 (192)
.-.+|+...-++.+.+. ....+..+-.+++..++.++...- ..+..+.+++..+..++.-|...-...+.+++
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~----~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 33334444444433333 334444445555555555554432 22333444444444444444444445556666
Q ss_pred HHHHHhhhhhhHHHHHHHH
Q 029490 126 EALEAFNEKNKEKVQLITK 144 (192)
Q Consensus 126 EaLEAfNEKnkEKa~LVtk 144 (192)
+..+-+++-+.+++++...
T Consensus 383 ~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 383 KLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655444
No 43
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.35 E-value=85 Score=33.28 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHH
Q 029490 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV 139 (192)
Q Consensus 60 VRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa 139 (192)
+++++..++--++++.+-++--.+|| +.+++..+.+|+.+-+++.--+..|+.+= |-+++.-++=.
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~eeL-------e~~~~et~~~~s~~~~~~~e~~~k~~~~~-------ek~~~~~~~v~ 321 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEEL-------ESEKKETRSKISQKQRELNEALAKVQEKF-------EKLKEIEDEVE 321 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhH-------HhHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 34455555555555555555445544 45888899999999999988888887653 33333333333
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHh
Q 029490 140 QLITKLMEVSVKYFSCSDRKMQELHFLIL 168 (192)
Q Consensus 140 ~LVtkLmELv~ESErlRmkKLEEL~kl~~ 168 (192)
.+.+.|-.|-... -.|++-++-.-+-|+
T Consensus 322 ~~~~~le~lk~~~-~~rq~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 322 EKKNKLESLKKAA-EKRQKRIEKAKKMIL 349 (1072)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444444333332 234454544444443
No 44
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=57.00 E-value=99 Score=26.44 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHhhhhhhHHHHHHHHHHH--------HHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHH-HHHhhhh
Q 029490 42 ALTTFRAKEEEIEKKKLEV--------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV-RKKIDSV 106 (192)
Q Consensus 42 Als~F~AKEEEIErkKmEV--------RekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~V-RKkID~v 106 (192)
++..++.-+.++.+|+-.+ -||++.----|.+.-.+..+.+.+.|.+++-+|+||... +.|++..
T Consensus 131 ~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~df 204 (234)
T cd07664 131 CWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDF 204 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777666442 123333233344455677778888999999999999877 4455443
No 45
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.95 E-value=60 Score=26.95 Aligned_cols=64 Identities=31% Similarity=0.500 Sum_probs=39.3
Q ss_pred HhhhhHHHhhhHHH-------HHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhh
Q 029490 67 HLGRVEEETKRLAT-------IREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134 (192)
Q Consensus 67 qLGRvEeetkRLa~-------IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEK 134 (192)
-|+|.|||..|-+. +|+.||.+ ++.-..++--|..+..++.-+-..-..||.+|+.--++||.-
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~----~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y 135 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQA----RKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY 135 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999887 66666543 233333333333333333333344456888888888888754
No 46
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=54.54 E-value=17 Score=27.23 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccch
Q 029490 60 VREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (192)
Q Consensus 60 VRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLg 114 (192)
.|+=-+.||..|-+--+.|-....--+-.+|..+.-..-.+-+|-.||++|.-|.
T Consensus 29 ~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~~L~~~~~~Iqevn~~l~~l~ 83 (84)
T PF11414_consen 29 ERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHREQLEFLLAQIQEVNRCLFGLI 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCcccccccchhhHHHHHHHHHHHHHHHhc
Confidence 4677788999999999999888887778899999999999999999999987653
No 47
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.37 E-value=1.4e+02 Score=25.62 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHhhhhHHHhhhHHHHHHHHHhcc--chhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHH
Q 029490 65 QAHLGRVEEETKRLATIREELEALA--DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLI 142 (192)
Q Consensus 65 qaqLGRvEeetkRLa~IreELE~la--DPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LV 142 (192)
+.+..-|+..-++....-.|.|.+. |+++++|+-+..|. +|-+.+|+.+|+.||.-+..=-.-.
T Consensus 126 ~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~--------------~ka~~~Y~~~v~~l~~~~~~~~~~m 191 (269)
T cd07673 126 QSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKS--------------KKATESYKLYVEKYALAKADFEQKM 191 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666555665542 44555554443333 4446679999999996644222222
Q ss_pred HHHHHhhhhhhhcchhhHHH
Q 029490 143 TKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 143 tkLmELv~ESErlRmkKLEE 162 (192)
...-+-.-+=|.-|+.-|-+
T Consensus 192 ~~~~~~~Q~~Ee~Ri~~~k~ 211 (269)
T cd07673 192 TETAQKFQDIEETHLIRIKE 211 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23333333444445444444
No 48
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=53.18 E-value=26 Score=23.51 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHhhh--hhhHHHHHHHHHHH-hhhhhhhcchh
Q 029490 118 QKKEREYKEALEAFNE--KNKEKVQLITKLME-VSVKYFSCSDR 158 (192)
Q Consensus 118 qKKEkEYKEaLEAfNE--KnkEKa~LVtkLmE-Lv~ESErlRmk 158 (192)
..-+.+|.+|+..++. -.++..+|..++.+ ..+..|+.+++
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~~e~~~l~ 122 (125)
T smart00766 79 ENLEEEFLDTLARLRKQLLERRIEELIAKLRRSGLTVEEKKELQ 122 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3446788888888876 44667777777776 66777776544
No 49
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=52.11 E-value=1.1e+02 Score=24.53 Aligned_cols=73 Identities=29% Similarity=0.469 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHh--cc----c--------hhHHHHHHHHHHhhhhhhccccc-----hhhHh
Q 029490 58 LEVREKVQAHLGRVEEETKRLATIREELEA--LA----D--------PMRKEVAVVRKKIDSVNKELKPL-----GHTCQ 118 (192)
Q Consensus 58 mEVRekVqaqLGRvEeetkRLa~IreELE~--la----D--------PmRKEV~~VRKkID~vNreLKPL-----gqsCq 118 (192)
.-|.+||.+.|-++++++. ..+.+-|+. .+ | ..-++|+.+|+|++.. +.++++ ...|.
T Consensus 34 ~~iq~Rva~eL~~L~~~~~--~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~-~kl~~~~~~~~~~~v~ 110 (142)
T PF07956_consen 34 LHIQERVAEELKRLEEEEL--KKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEER-KKLRELKEEKNSEEVE 110 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHH-HHHHhccccccchhhH
Confidence 3578899999999998873 233333322 22 2 2456778888888743 222222 23566
Q ss_pred hhHHHHHHHHHHhhh
Q 029490 119 KKEREYKEALEAFNE 133 (192)
Q Consensus 119 KKEkEYKEaLEAfNE 133 (192)
.-..+.-.||-..+.
T Consensus 111 ~aR~~vv~CL~~N~~ 125 (142)
T PF07956_consen 111 KARSAVVRCLRENDG 125 (142)
T ss_pred HHHHHHHHHHHHCCC
Confidence 666666666655443
No 50
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.51 E-value=1.5e+02 Score=25.24 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHH------HHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHH-------HHhhhhhhccccc
Q 029490 47 RAKEEEIEKKKLEVRE------KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR-------KKIDSVNKELKPL 113 (192)
Q Consensus 47 ~AKEEEIErkKmEVRe------kVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VR-------KkID~vNreLKPL 113 (192)
+.-+++..+...++++ ....++.++++|..+|..-+.+++.+..-++.+..+-- .+|+.+..++.-|
T Consensus 15 ~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l 94 (246)
T PF00769_consen 15 RQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARL 94 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655555544 34677888999999999998888877766666554433 3666666666555
Q ss_pred hhhHhhhHHH
Q 029490 114 GHTCQKKERE 123 (192)
Q Consensus 114 gqsCqKKEkE 123 (192)
-..-++|+.|
T Consensus 95 ~ee~~~ke~E 104 (246)
T PF00769_consen 95 EEESERKEEE 104 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 51
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=51.37 E-value=19 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=29.6
Q ss_pred cccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 029490 110 LKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVK 151 (192)
Q Consensus 110 LKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~E 151 (192)
+-|+|++|-..||. +-+.|+.+.+.+..||..|.+-..+
T Consensus 103 ~SpiGr~a~~eer~---~f~~~D~~~~iR~~~v~~L~~~f~d 141 (220)
T PF03332_consen 103 FSPIGRNASQEERD---EFDEYDKKHKIREKLVEALKKEFPD 141 (220)
T ss_dssp E-SS-TTS-HHHHH---HHHHHHHHHTHHHHHHHHHHHHTCC
T ss_pred ECcccCcCCHHHHH---hhhhcChhhhHHHHHHHHHHHHCCC
Confidence 46999999987764 5667899999999999999876654
No 52
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=50.33 E-value=94 Score=27.14 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029490 48 AKEEEIEKKKLEVREKVQAH 67 (192)
Q Consensus 48 AKEEEIErkKmEVRekVqaq 67 (192)
.|||=|.|-++.=-+|+.+.
T Consensus 17 skeel~~rLR~~E~ek~~~m 36 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLM 36 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444443
No 53
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=50.30 E-value=1e+02 Score=22.84 Aligned_cols=71 Identities=30% Similarity=0.449 Sum_probs=39.9
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccch-hHHHH-------HHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhh
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADP-MRKEV-------AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNE 133 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDP-mRKEV-------~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNE 133 (192)
+.+++++..+.....++....+.|+.+... .-.++ .-++-+|...|+=+=|+|-.+- =|+...+|.+.++.
T Consensus 16 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~-vE~~~~eA~~~l~~ 94 (129)
T cd00584 16 EELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY-VEKDLEEAIEFLDK 94 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE-EEecHHHHHHHHHH
Confidence 356778888888888888888888888541 11111 1123344444555556654432 24445555555544
No 54
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.14 E-value=52 Score=26.22 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=31.3
Q ss_pred HHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHH
Q 029490 85 LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREY 124 (192)
Q Consensus 85 LE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEY 124 (192)
.+.-.++.-.|++...+.|+..+.++.-|-.-|..-++||
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567778888888888888888888888887777777
No 55
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.32 E-value=1.3e+02 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhh
Q 029490 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnk 136 (192)
+...+..+++..+...+++-+.+..=.++-++..+...+...
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 165 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRS 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544444444333333333333333
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.24 E-value=2.8e+02 Score=29.68 Aligned_cols=55 Identities=27% Similarity=0.527 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhc---cchhHHHHHHHHHHhhhhhhc
Q 029490 55 KKKLEVREKVQAHLGRVEEETKRLATIREELEAL---ADPMRKEVAVVRKKIDSVNKE 109 (192)
Q Consensus 55 rkKmEVRekVqaqLGRvEeetkRLa~IreELE~l---aDPmRKEV~~VRKkID~vNre 109 (192)
-+.-++.+++....|.+++...+|..|-..+..+ +|-+--|+...|+..|.+=|+
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999998887765554 455666777777777776663
No 57
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.78 E-value=2e+02 Score=26.26 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 029490 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVK 151 (192)
Q Consensus 78 La~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~E 151 (192)
+...+..|+.|++-.-+-+..|.+|=..+|.+|.||.+--...-.++.++-+.||+-+.--..+-..|-++-.+
T Consensus 236 ~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445577777777778888888888999999999999888888888899999988887766666666665443
No 58
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=46.62 E-value=1.7e+02 Score=25.31 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=25.7
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHH
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVV 99 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~V 99 (192)
||++.-..-|.+-.+|..+.+.+.+.+++-||+||...
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rF 196 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRF 196 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554455555666677777777788888888887654
No 59
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=46.21 E-value=15 Score=33.53 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHhccchhHHHHHHHHHHhhhhhhccccchhhHh
Q 029490 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (192)
Q Consensus 84 ELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCq 118 (192)
=|..|.=|+|.||..|-|+|..+-|+++-|...-.
T Consensus 279 ~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 279 LLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999988865433
No 60
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.88 E-value=1.4e+02 Score=24.11 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHH
Q 029490 66 AHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKL 145 (192)
Q Consensus 66 aqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkL 145 (192)
..-+++.+-+..++..++++..+. -++..-.|-|+.+|-|+-.|-- +|..+-+.+..-.+|=.+||.++
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~----~~l~ek~k~~e~l~DE~~~L~l-------~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLE----EELKEKNKANEILQDELQALQL-------QLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333 3566667777777777766543 45555556666677788999999
Q ss_pred HHhhhh
Q 029490 146 MEVSVK 151 (192)
Q Consensus 146 mELv~E 151 (192)
|..+..
T Consensus 182 m~~k~~ 187 (194)
T PF08614_consen 182 MQRKAQ 187 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987753
No 61
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=45.02 E-value=48 Score=21.61 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHhc
Q 029490 58 LEVREKVQAHLGRVEEETKRLATIREELEAL 88 (192)
Q Consensus 58 mEVRekVqaqLGRvEeetkRLa~IreELE~l 88 (192)
-.+.+-+..++..+++....|+.++..|+.+
T Consensus 35 ~~~~~~l~~~~~~i~~~i~~L~~~~~~L~~l 65 (65)
T PF09278_consen 35 ADRRALLEEKLEEIEEQIAELQALRAQLEHL 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455778888888999899999999888754
No 62
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=44.73 E-value=1.8e+02 Score=25.22 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHhc-----cchhH-------HHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHH
Q 029490 75 TKRLATIREELEAL-----ADPMR-------KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLI 142 (192)
Q Consensus 75 tkRLa~IreELE~l-----aDPmR-------KEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LV 142 (192)
-+||+.++..+..- =+|++ |++..-|||+...==++----..-+|-|.|.+.|-+-|.+ ++| +-
T Consensus 102 ~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~kf~~-~~E---~a 177 (220)
T cd07617 102 QKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQTEFDR-QAE---VT 177 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHH---HH
Confidence 34555555554432 24544 6777888887632111111111111127799999999987 444 22
Q ss_pred HHHHHhhhhhhhcchhhHHHHHHHHhh
Q 029490 143 TKLMEVSVKYFSCSDRKMQELHFLILG 169 (192)
Q Consensus 143 tkLmELv~ESErlRmkKLEEL~kl~~~ 169 (192)
..+|.-|.+++=- -+..|+.||-.
T Consensus 178 ~~~M~~il~~~~e---~l~~L~~lv~A 201 (220)
T cd07617 178 RLLLEGISSTHVN---HLRCLHEFVEA 201 (220)
T ss_pred HHHHHHHHhcChH---HHHHHHHHHHH
Confidence 4469988888643 34455555543
No 63
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=44.72 E-value=80 Score=32.41 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHh---hhHHHHHHHHHhccchhHHHHHHHHHHhhh
Q 029490 49 KEEEIEKKKLEVREKVQAHLGRVEEET---KRLATIREELEALADPMRKEVAVVRKKIDS 105 (192)
Q Consensus 49 KEEEIErkKmEVRekVqaqLGRvEeet---kRLa~IreELE~laDPmRKEV~~VRKkID~ 105 (192)
+|-++-+-..+++.||..|+.+-..|- ..|..|++||-...|.- .||+.+|+||+.
T Consensus 203 ~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~ 261 (782)
T COG0466 203 KEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEK 261 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhh
Confidence 344444566778999999988766653 46788899997776655 999999999984
No 64
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=44.71 E-value=1.8e+02 Score=24.77 Aligned_cols=87 Identities=28% Similarity=0.354 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhhh----HHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh-hHhhhHHHHHHHHHHh
Q 029490 57 KLEVREKVQAHLGRV----EEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH-TCQKKEREYKEALEAF 131 (192)
Q Consensus 57 KmEVRekVqaqLGRv----EeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq-sCqKKEkEYKEaLEAf 131 (192)
-|+.-+.|..+||++ +--.|-++.|++|||.| -+.+.+|-+-...|-+++-|++. +-|--+-+..+.-|--
T Consensus 49 imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerL----e~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV 124 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERL----EENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQV 124 (157)
T ss_pred HHHHHHHHHhhcccccccccchhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHH
Confidence 366678889999965 55679999999999987 46788888899999999999873 4444444455555555
Q ss_pred hhhhhHHHHHHHHHHH
Q 029490 132 NEKNKEKVQLITKLME 147 (192)
Q Consensus 132 NEKnkEKa~LVtkLmE 147 (192)
|+---++++...-+-+
T Consensus 125 ~el~~i~emv~~d~~~ 140 (157)
T COG3352 125 NELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHhccchh
Confidence 5554444444444333
No 65
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.23 E-value=74 Score=27.45 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHhhhhhhHHHHHHHHHH--H-HHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 029490 41 SALTTFRAKEEEIEKKKLE--V-REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100 (192)
Q Consensus 41 sAls~F~AKEEEIErkKmE--V-RekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VR 100 (192)
.|-+.-+.|.+..+|-|+- + .+||..-+.-+++.+++-.+....++.+++-|+.|+...-
T Consensus 133 qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~ 195 (230)
T cd07625 133 QAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWT 195 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888887763 3 5699989999999999999999999999999999886553
No 66
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=43.93 E-value=2e+02 Score=24.32 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
.+++.-++.|+. -..+.+.+-+.+|..+|..+|.-+..=-+-+....+.+-+=|..|+.-|-+
T Consensus 167 ~~eleK~~~k~~-------k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~ 229 (258)
T cd07655 167 PDQVKKLQDKVE-------KCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKE 229 (258)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555555544 456778889999999999999988533333444444444445555554443
No 67
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.35 E-value=2.4e+02 Score=26.81 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=37.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhh
Q 029490 41 SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK 108 (192)
Q Consensus 41 sAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNr 108 (192)
|-+|..+.|=..--+.+|+=--..|+-|.|-|||- +.+-++|+.+---.-.++..+.|-||.+|+
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL---~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEEL---NIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444433322222333333445567777777774 444555555555556788888888888775
No 68
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=42.99 E-value=26 Score=25.58 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHhccchhHHH
Q 029490 64 VQAHLGRVEEETKRLATIREELEALADPMRKE 95 (192)
Q Consensus 64 VqaqLGRvEeetkRLa~IreELE~laDPmRKE 95 (192)
+.+.+...+.--.++..+.+|+-+++.|-|||
T Consensus 67 ~l~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (98)
T cd01279 67 IIELYPQVLLLQCRSCEHATELIGCAKPCRKE 98 (98)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhcccccccC
Confidence 34556666777778889999999999999986
No 69
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=41.75 E-value=1.8e+02 Score=27.18 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=10.6
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhc
Q 029490 63 KVQAHLGRVEEETKRLATIREELEAL 88 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~l 88 (192)
-+...+..++-.-.+|..|.+.|..+
T Consensus 288 ~l~~~~~~l~~dp~~L~ele~RL~~l 313 (563)
T TIGR00634 288 ELQNYLDELEFDPERLNEIEERLAQI 313 (563)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33333334443344444444444333
No 70
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=41.09 E-value=1.5e+02 Score=22.19 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=60.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhh---hHHHhhhH---HHHHHHHHhccchhHHHHHHHHHHh-----hhhhhccccc
Q 029490 45 TFRAKEEEIEKKKLEVREKVQAHLGR---VEEETKRL---ATIREELEALADPMRKEVAVVRKKI-----DSVNKELKPL 113 (192)
Q Consensus 45 ~F~AKEEEIErkKmEVRekVqaqLGR---vEeetkRL---a~IreELE~laDPmRKEV~~VRKkI-----D~vNreLKPL 113 (192)
....+|++|.+...++...+-..+.+ .....+++ -.|--.||.+||=...=+..+.+.. +.+-++|..+
T Consensus 42 ~i~~~e~~id~l~~~i~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~lErigD~~~~ia~~~~~~~~~~~~~~~~~el~~m 121 (212)
T TIGR02135 42 KVIEDDDQINALEVKIEEKCLRLIALQQPVAKDLRLIISIIKISSDLERIGDYAVNIAKRALRLKEEDAKPKHLEELEKM 121 (212)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHH
Confidence 45567788888888887765544443 22333333 3555799999998665333333322 4556777777
Q ss_pred hhhHhhhHHHHHHHHHHhhhhhhHHHHHH
Q 029490 114 GHTCQKKEREYKEALEAFNEKNKEKVQLI 142 (192)
Q Consensus 114 gqsCqKKEkEYKEaLEAfNEKnkEKa~LV 142 (192)
++.|.+ -+..|.++|...+...+.-|
T Consensus 122 ~~~v~~---~l~~a~~al~~~d~~~~~~i 147 (212)
T TIGR02135 122 GKLALK---MLKDALDAFLNKDAELARQV 147 (212)
T ss_pred HHHHHH---HHHHHHHHHHhCCHHHHHHH
Confidence 777765 67888888877776655433
No 71
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=40.96 E-value=2e+02 Score=23.55 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=34.5
Q ss_pred hhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 104 DSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 104 D~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
+.++.-|.-.-+.-++-+.+|+.+++.||.-+..=-+-...+.+.+-+=|..|+.-|-+
T Consensus 153 eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~ 211 (236)
T cd07651 153 EKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKS 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455666788999999998876643333444444555555555555443
No 72
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=40.45 E-value=19 Score=31.60 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=27.6
Q ss_pred HHHhccchhHHHHHHHHHHhhhhhhccccch
Q 029490 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLG 114 (192)
Q Consensus 84 ELE~laDPmRKEV~~VRKkID~vNreLKPLg 114 (192)
=|+.|.=|+|.||..|-|+|..+=|+++-|.
T Consensus 262 ~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 262 YLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999987663
No 73
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=39.73 E-value=66 Score=28.57 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
++|++++.-+. .|.-..|++|++.||-.-.+||+..|+.|=.+=|+|
T Consensus 274 e~~~~il~nmS-----~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L 320 (338)
T TIGR00207 274 PLREKFLNNMS-----QRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKL 320 (338)
T ss_pred HHHHHHHHHhh-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 47777777663 233446899999999999999999999998777766
No 74
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=39.59 E-value=1.6e+02 Score=29.52 Aligned_cols=78 Identities=35% Similarity=0.522 Sum_probs=51.4
Q ss_pred HHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh
Q 029490 36 EEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (192)
Q Consensus 36 Ee~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq 115 (192)
..+-..|+..-++.|.+|.-.|-|++--+ -|-.+|||-|| |-+++=|| |+-+-|
T Consensus 509 q~llkva~dnar~qekQiq~Ek~ELkmd~-----------lrerelresle-------kql~~Erk--------lR~~~q 562 (641)
T KOG3915|consen 509 QGLLKVAIDNARAQEKQIQLEKTELKMDF-----------LRERELRESLE-------KQLAMERK--------LRAIVQ 562 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-------HHHHHHHH--------HHHHHH
Confidence 57778899999999999988887776432 24456777776 33443333 333344
Q ss_pred hHhhhHHHH----HHHHHHhhhhhhHHHH
Q 029490 116 TCQKKEREY----KEALEAFNEKNKEKVQ 140 (192)
Q Consensus 116 sCqKKEkEY----KEaLEAfNEKnkEKa~ 140 (192)
.-.||||.| ++||+ |+-|-+|+|.
T Consensus 563 kr~kkEkk~k~k~qe~L~-~~sk~reqae 590 (641)
T KOG3915|consen 563 KRLKKEKKAKRKLQEALE-FESKRREQAE 590 (641)
T ss_pred HHHHHHHHHHHHHHHHhh-hccccchhhh
Confidence 445667654 57776 6778888774
No 75
>PRK11637 AmiB activator; Provisional
Probab=39.45 E-value=2.8e+02 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhhccccchhhHhhhHH
Q 029490 94 KEVAVVRKKIDSVNKELKPLGHTCQKKER 122 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgqsCqKKEk 122 (192)
.+++.+.++|+.++.+|.-+-..-...+.
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333
No 76
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.68 E-value=2.3e+02 Score=23.57 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHh-hhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccc
Q 029490 45 TFRAKEEEIEKKKLEVREKVQAHL-GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 45 ~F~AKEEEIErkKmEVRekVqaqL-GRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLK 111 (192)
.+++-...++..-..+.++|+.++ ++.+.-..++..+-..+..+.+-++.|....+..|+..+..|.
T Consensus 60 ~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~ 127 (247)
T PF06705_consen 60 SNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELV 127 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444455555556666776654 4667777888888899999999999999999999988877664
No 77
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.34 E-value=1.1e+02 Score=22.64 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=19.0
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccc
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALAD 90 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laD 90 (192)
+.++++++.+......+....+.|+.+.+
T Consensus 16 ~~l~~~i~~l~~~i~e~~~~~~~L~~l~~ 44 (126)
T TIGR00293 16 ESLQAQIAALRALIAELETAIETLEDLKG 44 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35666777777777777666666666643
No 78
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.98 E-value=1.5e+02 Score=21.31 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=19.5
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccc
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALAD 90 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laD 90 (192)
.+++++..+......+....++|+.+.|
T Consensus 17 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 17 ALQQQLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777777777777777763
No 79
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=37.79 E-value=71 Score=28.02 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
++|+++...+. .|.=..|++||+.||-.-..+|+..|+.|=.+=|+|
T Consensus 277 ~~~~~il~nmS-----~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~~r~l 323 (339)
T PRK05686 277 ELREKFLSNMS-----KRAAEMLREDLEALGPVRLSDVEEAQKKIVQIARRL 323 (339)
T ss_pred HHHHHHHHhcC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 47788877764 234456899999999999999999999997776665
No 80
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.44 E-value=3.6e+02 Score=25.42 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=73.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhHHH-hhhHHHHHHHH------------HhccchhHHHHHHHHHHhhhhhhccc
Q 029490 45 TFRAKEEEIEKKKLEVREKVQAHLGRVEEE-TKRLATIREEL------------EALADPMRKEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 45 ~F~AKEEEIErkKmEVRekVqaqLGRvEee-tkRLa~IreEL------------E~laDPmRKEV~~VRKkID~vNreLK 111 (192)
-...+-++|+....++.+.++.- --.|.+ -..|..++..| -++.+...--...+..+|..+..+|.
T Consensus 387 el~e~leeie~eq~ei~e~l~~L-rk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~ 465 (569)
T PRK04778 387 EILKQLEEIEKEQEKLSEMLQGL-RKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE 465 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556666666666666532 222322 23344444433 34556666778888999999999888
Q ss_pred cchh-hHhhhHHHHHHHHHHhhhhhhHHHHHHHH---HHHhhhhhhhcchhhHHHHHH
Q 029490 112 PLGH-TCQKKEREYKEALEAFNEKNKEKVQLITK---LMEVSVKYFSCSDRKMQELHF 165 (192)
Q Consensus 112 PLgq-sCqKKEkEYKEaLEAfNEKnkEKa~LVtk---LmELv~ESErlRmkKLEEL~k 165 (192)
- |. .-..-+++|.+|-+.|+.=......|+.. +..++..+.|-|- -.++++.
T Consensus 466 ~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~-~~~~V~~ 521 (569)
T PRK04778 466 E-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRS-DNEEVAE 521 (569)
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCHHHHH
Confidence 7 44 34445669999999999999888888753 4446666555542 2344443
No 81
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.22 E-value=2.4e+02 Score=23.38 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHhhhhHHHhhhHHHHHHHHHhc--cchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHH
Q 029490 66 AHLGRVEEETKRLATIREELEAL--ADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLIT 143 (192)
Q Consensus 66 aqLGRvEeetkRLa~IreELE~l--aDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVt 143 (192)
..+.-++..-++...--.|++.+ .+++.|++.-++.|++.+ ..+|+.+++.||.-+.+=-.-+.
T Consensus 120 ~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka--------------~~~Y~~~v~~~~~~~~~~~~~m~ 185 (261)
T cd07648 120 TTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKA--------------QDEYKALVEKYNNIRADFETKMT 185 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333322 234677777777776444 35899999999877766333334
Q ss_pred HHHHhhhhhhhcchhhHHHHH
Q 029490 144 KLMEVSVKYFSCSDRKMQELH 164 (192)
Q Consensus 144 kLmELv~ESErlRmkKLEEL~ 164 (192)
...+-+-+=|..|+.-|-+.-
T Consensus 186 ~~~~~~Q~lEe~Ri~~~k~~l 206 (261)
T cd07648 186 DSCKRFQEIEESHLRQMKEFL 206 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555655555443
No 82
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=36.90 E-value=68 Score=22.61 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHhhhHHHHHHH
Q 029490 55 KKKLEVREKVQAHLG-------RVEEETKRLATIREE 84 (192)
Q Consensus 55 rkKmEVRekVqaqLG-------RvEeetkRLa~IreE 84 (192)
+..|||-.+.+.||. |+|+..|.|..|.+.
T Consensus 9 r~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek 45 (51)
T PF14379_consen 9 RMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEK 45 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999999888 888888888888764
No 83
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=36.74 E-value=99 Score=25.63 Aligned_cols=43 Identities=37% Similarity=0.466 Sum_probs=27.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Q 029490 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIR 82 (192)
Q Consensus 40 rsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~Ir 82 (192)
..+++-++.+|++.-+++-+.-.-+...--.||++-+++|.=|
T Consensus 61 ~~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr 103 (149)
T PF15346_consen 61 EEALEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEER 103 (149)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777666666666666666666666666665433
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.72 E-value=2.3e+02 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhhccccchhhHhhhHHHHHH
Q 029490 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKE 126 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgqsCqKKEkEYKE 126 (192)
+++..+.+.|+.+..+|+-...+-.+.++...+
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 344444444444444444444444444444433
No 85
>PRK01156 chromosome segregation protein; Provisional
Probab=36.21 E-value=4.1e+02 Score=25.78 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=4.7
Q ss_pred hHHHhhhHHHHHH
Q 029490 71 VEEETKRLATIRE 83 (192)
Q Consensus 71 vEeetkRLa~Ire 83 (192)
++.+-.+|.....
T Consensus 624 le~~~~~le~~~~ 636 (895)
T PRK01156 624 IENEANNLNNKYN 636 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 86
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.30 E-value=1.4e+02 Score=29.36 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=33.4
Q ss_pred hhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccc
Q 029490 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 70 RvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLK 111 (192)
+++.-+=|+.-+-+=|+.-+=|.-.+=+.+|+|.|.+-++++
T Consensus 387 ~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln 428 (508)
T KOG3091|consen 387 ELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLN 428 (508)
T ss_pred HHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhc
Confidence 334445567777777888888999999999999999988887
No 87
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.13 E-value=2.4e+02 Score=25.88 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 029490 123 EYKEALEAFNEKNKEKVQLITKLMEVSVKYF 153 (192)
Q Consensus 123 EYKEaLEAfNEKnkEKa~LVtkLmELv~ESE 153 (192)
-|.++-+-|.|--+||..|+..|-+|-+|.|
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~e 166 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYE 166 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777777777777777766655
No 88
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.79 E-value=1.7e+02 Score=20.57 Aligned_cols=70 Identities=16% Similarity=0.392 Sum_probs=43.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHH---hc-cchhHHHHHHHHHHhhhhhhccc
Q 029490 42 ALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELE---AL-ADPMRKEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 42 Als~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE---~l-aDPmRKEV~~VRKkID~vNreLK 111 (192)
=+++|...=+++...=-+++..=..-+..++.+...|..+.+-.. .| -+|-.+=+..+||++..+|.-+.
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~ 81 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQ 81 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444444445555444457788888888988877322 22 34566667778888887776554
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.60 E-value=3.7e+02 Score=26.31 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHH----Hhh-hhhhHHHHHH-----HHHHHhhhhhhhcchhhHHHH
Q 029490 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE----AFN-EKNKEKVQLI-----TKLMEVSVKYFSCSDRKMQEL 163 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLE----AfN-EKnkEKa~LV-----tkLmELv~ESErlRmkKLEEL 163 (192)
.++.++.-.+..++.++.-.-..+...|.+|+=--. ..| +.|-+|.+-+ .+|++|-.+-|..|...++|+
T Consensus 349 ~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~ 428 (594)
T PF05667_consen 349 AEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEY 428 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345555555555666666666666777777653211 122 4555554433 567777788888887777777
Q ss_pred HHHH
Q 029490 164 HFLI 167 (192)
Q Consensus 164 ~kl~ 167 (192)
..|=
T Consensus 429 r~lk 432 (594)
T PF05667_consen 429 RRLK 432 (594)
T ss_pred HHHH
Confidence 6654
No 90
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.04 E-value=1.5e+02 Score=24.61 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=57.3
Q ss_pred hHHhhHHHHhhhhhhHHHHHHH--HHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcccc
Q 029490 35 DEEMSRSALTTFRAKEEEIEKK--KLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKP 112 (192)
Q Consensus 35 eEe~srsAls~F~AKEEEIErk--KmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKP 112 (192)
|.+-|+.|+..-.+--+-..-+ ..|+=++ -|- .. -..=-.-|+.+-.-+.+++..+|+.||.||+.=|-
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~----~g~--na---W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSK----YGE--NA---WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888887776655442221 2222221 111 11 11112578888888999999999999999986543
Q ss_pred chhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 029490 113 LGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCS 156 (192)
Q Consensus 113 LgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlR 156 (192)
-=..+..+ ++.=...=..+|++-.++-..-..++
T Consensus 169 ~Q~~~~~~----------L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 169 RQEEAGEE----------LRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 22222333456666666655555544
No 91
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=32.98 E-value=27 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhhccccc
Q 029490 94 KEVAVVRKKIDSVNKELKPL 113 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPL 113 (192)
+++..+|+.||.++++|=-|
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L 22 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM 22 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998644
No 92
>PRK10203 hypothetical protein; Provisional
Probab=32.36 E-value=96 Score=24.83 Aligned_cols=61 Identities=13% Similarity=0.269 Sum_probs=34.5
Q ss_pred HhhhhHHH---hhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHH
Q 029490 67 HLGRVEEE---TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (192)
Q Consensus 67 qLGRvEee---tkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaL 128 (192)
.-|-+=++ -|-+..+++.|..++|+. -+...++|++...|--+..++-.+.-.-.+|.+-+
T Consensus 52 nag~lP~el~LrKE~~~l~~~l~~~~d~~-~~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki 115 (122)
T PRK10203 52 NAGCLPPELEQRREAIQLLDLLKGIREDD-PQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKL 115 (122)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 33444443 345677788888888763 22234566666665555555555444446666543
No 93
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=32.35 E-value=33 Score=25.44 Aligned_cols=39 Identities=31% Similarity=0.332 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHhhhhhhccccchh---hHhhhHHHHHHHH
Q 029490 90 DPMRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEAL 128 (192)
Q Consensus 90 DPmRKEV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEaL 128 (192)
.++.-++..+|.+||.++++|=.|=. .|-+.=-+||...
T Consensus 4 ~~~~~~L~~lR~~Id~iD~~ll~Ll~eR~~l~~~Va~~K~~~ 45 (101)
T COG1605 4 TIMMEELEELREEIDEIDRELLDLLAERLELAKEVGEAKAAS 45 (101)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45777899999999999998865532 3444444455443
No 94
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.29 E-value=2.9e+02 Score=22.86 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhH
Q 029490 92 MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKM 160 (192)
Q Consensus 92 mRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKL 160 (192)
+.||+.-++.|... ..+++++-..+|+.+++.+|.-+..=-+=+....+.+-+-|-.|+.-|
T Consensus 151 ~~ke~eK~~~K~~k-------~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~l 212 (239)
T cd07647 151 QPKEAEKLKKKAAQ-------CKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFL 212 (239)
T ss_pred CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554443 456678888999999888877664333333344455555555555555
No 95
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.19 E-value=3e+02 Score=22.91 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHh
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQ 118 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCq 118 (192)
+++.....--.+.++-++||..+..+|+..-+ =+..+-.+|..+..+|+-+|.+|.
T Consensus 103 ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe----R~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 103 EAKRRAEEAERKYEEVERKLKVLEQELERAEE----RAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhHHHHHHHHHHHHHHHH
Confidence 33333444445566777777777777765433 234445555555566666665553
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.03 E-value=3.4e+02 Score=23.58 Aligned_cols=83 Identities=24% Similarity=0.372 Sum_probs=62.1
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHH---HhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHH
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRK---KIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK 138 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRK---kID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEK 138 (192)
-|+++.+--+|+.+.+|+. |++.+ |+..-+..+ +-++|+.||.-|-.+|-.=|-+|.-.+..--.-++|.
T Consensus 25 ~kL~~~ve~~ee~na~L~~---e~~~L----~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAE---EITDL----RKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999988874 44443 333334443 3467799999999999999999999888777788999
Q ss_pred HHHHHHHHHhhhh
Q 029490 139 VQLITKLMEVSVK 151 (192)
Q Consensus 139 a~LVtkLmELv~E 151 (192)
-+||..+-.|=-|
T Consensus 98 q~L~~~i~~Lqee 110 (193)
T PF14662_consen 98 QSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887655433
No 97
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.01 E-value=2.7e+02 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 029490 118 QKKEREYKEALEAFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 118 qKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL 148 (192)
.++...|+...+.|++...+-.+|-..+.+|
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555555555555444
No 98
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=31.89 E-value=63 Score=27.95 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhhhhhhcccc
Q 029490 92 MRKEVAVVRKKIDSVNKELKP 112 (192)
Q Consensus 92 mRKEV~~VRKkID~vNreLKP 112 (192)
+.+|+..+|-+|+++|.++-.
T Consensus 110 ~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 110 IKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666666655543
No 99
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=31.82 E-value=1.1e+02 Score=28.97 Aligned_cols=49 Identities=22% Similarity=0.140 Sum_probs=32.6
Q ss_pred hhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHH-------hhhhhhhcchh
Q 029490 105 SVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME-------VSVKYFSCSDR 158 (192)
Q Consensus 105 ~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmE-------Lv~ESErlRmk 158 (192)
.||+|||.|----.--+-.| -||--..+|.||+-++-+ +-.++||+|.+
T Consensus 158 ~vNsELK~LlVASvgddLQ~-----~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~erl~iq 213 (383)
T KOG4074|consen 158 KVNSELKRLLVASVGDDLQG-----QVEALTEDKVQLAHRVDEYMGNLMVEDEQSERLRIQ 213 (383)
T ss_pred HHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhH
Confidence 59999998754443333333 366677899999877655 34467777764
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.73 E-value=3.6e+02 Score=23.76 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhhhccccchhhHhh
Q 029490 94 KEVAVVRKKIDSVNKELKPLGHTCQK 119 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgqsCqK 119 (192)
.|+...-.++..++.+|-+|-.--.+
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.87 E-value=4.6e+02 Score=24.71 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHH
Q 029490 96 VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQL 141 (192)
Q Consensus 96 V~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~L 141 (192)
+..+.+.|..++..++.+-..+..+...|.++.+.|++-.+....+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leei 395 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEI 395 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4445556777777777776666677666777777776655444433
No 102
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=30.61 E-value=3.4e+02 Score=23.10 Aligned_cols=57 Identities=9% Similarity=0.227 Sum_probs=36.6
Q ss_pred HHHhhhHHHHHHHHHhccchh--HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhh
Q 029490 72 EEETKRLATIREELEALADPM--RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136 (192)
Q Consensus 72 EeetkRLa~IreELE~laDPm--RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnk 136 (192)
|.+.+.....++.+.. +||+ -||+.-++-|++... ++-++-+++|..+++.+|+-+.
T Consensus 131 e~~Cke~~~a~~~~~~-~~~~~~~ke~~K~~~Kl~K~~-------~~~~k~~~~Y~~~v~~l~~~~~ 189 (240)
T cd07672 131 EQKCRDKDEAEQAVNR-NANLVNVKQQEKLFAKLAQSK-------QNAEDADRLYMQNISVLDKIRE 189 (240)
T ss_pred HHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443344444443 4554 688877777766654 4567788999999999987653
No 103
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.52 E-value=6e+02 Score=25.93 Aligned_cols=39 Identities=18% Similarity=0.466 Sum_probs=25.9
Q ss_pred HHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHH
Q 029490 83 EELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYK 125 (192)
Q Consensus 83 eELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYK 125 (192)
.+|+..-+-|++|+.+++.+.+..-+++. .-..+.+||.
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~ 477 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVR----DKVRKDREIR 477 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHH
Confidence 34444444556888888888888888877 3345566654
No 104
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.31 E-value=3.4e+02 Score=29.25 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=30.3
Q ss_pred chhhhhhccCCcccccCCCCCCcchHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 029490 11 NLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEE 73 (192)
Q Consensus 11 ~~~~~~~~~~sg~~~~~~s~~~~eeEe~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEe 73 (192)
|.++||+++++| +.|++.+=..-+.-=-.|...=.+|..++++|+. |..++...|.
T Consensus 635 ~ksGlmsGG~s~------~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~-v~~~i~~le~ 690 (1141)
T KOG0018|consen 635 HKSGLMSGGSSG------AKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSS-VESKIHGLEM 690 (1141)
T ss_pred eccceecCCccC------CCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHH
Confidence 445567777776 2465543222222223445555667777776653 6666666654
No 105
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=30.04 E-value=1.3e+02 Score=26.93 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhh----------hhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 029490 92 MRKEVAVVRKKID----------SVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLM 146 (192)
Q Consensus 92 mRKEV~~VRKkID----------~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLm 146 (192)
...|++..++++. .|-...++....+.+++.++++-+.+|..++-++++...++|
T Consensus 263 ~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~~a~el~~~l 327 (332)
T PF00456_consen 263 TEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPEEAQELERRL 327 (332)
T ss_dssp HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 4456777777664 333344556666889999999999999999999999888765
No 106
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=1.1e+02 Score=28.29 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=55.3
Q ss_pred Hhccchh-HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh-hcchhhHHHH
Q 029490 86 EALADPM-RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYF-SCSDRKMQEL 163 (192)
Q Consensus 86 E~laDPm-RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESE-rlRmkKLEEL 163 (192)
+.+-||+ +|||. |||||-. .--||+-|+--+|-+||.+--+=..+|..|...+..++ ..+++.-++.
T Consensus 58 q~fED~~vekEv~-iRrri~~----------~~nk~~eeF~~~LaeyndylEe~Ediv~nl~~~~dv~~t~~k~~~ye~~ 126 (300)
T KOG3800|consen 58 QTFEDPTVEKEVD-IRRRILR----------IFNKKEEEFTGSLAEYNDYLEEVEDIVFNLGNNIDVTETKEKVKTYEEP 126 (300)
T ss_pred hhcchhHHHHHHH-HHHHHHH----------HhccchhhhhhhHHHHhcccHHHHHHHHHhhcccchhHHHHHHHHhhcc
Confidence 4578997 67886 6777643 34578999999999999999999999999988776655 3466777777
Q ss_pred HH-HHhhc
Q 029490 164 HF-LILGS 170 (192)
Q Consensus 164 ~k-l~~~~ 170 (192)
|+ .|.+.
T Consensus 127 nk~~I~~n 134 (300)
T KOG3800|consen 127 NKDSIQNN 134 (300)
T ss_pred CcccccCC
Confidence 65 34443
No 107
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=29.48 E-value=5.6e+02 Score=25.22 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=58.9
Q ss_pred hhhHHHhhhHHHHHH---HHHhccchhHHHHHHHHHHhhhhh-------hccccchhhHhhhHHHHHHHHHHhhhhhhHH
Q 029490 69 GRVEEETKRLATIRE---ELEALADPMRKEVAVVRKKIDSVN-------KELKPLGHTCQKKEREYKEALEAFNEKNKEK 138 (192)
Q Consensus 69 GRvEeetkRLa~Ire---ELE~laDPmRKEV~~VRKkID~vN-------reLKPLgqsCqKKEkEYKEaLEAfNEKnkEK 138 (192)
+--|+|++|.+.|-. .||..||=+.+=+..+.||++-=. +||.||=+. -.--...|..+|+-...++
T Consensus 393 ~Lse~es~r~~~iid~a~~lE~IgDiie~l~~~~~kk~~~~~~fse~~~~el~~l~~~---~~~n~~~a~~~l~~~D~~~ 469 (533)
T COG1283 393 GLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDALFAL---TLENLRLAISVLVTGDLEL 469 (533)
T ss_pred cCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHcCCHHH
Confidence 335999999999875 899999999998888888886422 334443222 1234567788888888888
Q ss_pred HHHHHHHHHhhhhhhhc
Q 029490 139 VQLITKLMEVSVKYFSC 155 (192)
Q Consensus 139 a~LVtkLmELv~ESErl 155 (192)
|..+-.=.+-+-+.||.
T Consensus 470 ar~lv~~k~~~r~~e~~ 486 (533)
T COG1283 470 ARRLVERKKRVRRLERR 486 (533)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87666556666666653
No 108
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=28.84 E-value=9.1e+02 Score=27.50 Aligned_cols=113 Identities=24% Similarity=0.348 Sum_probs=61.2
Q ss_pred HHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh
Q 029490 36 EEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (192)
Q Consensus 36 Ee~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq 115 (192)
|+.-+...+..++.|++....+ ..+.|+.++|-..|..-.+=..+|.|+|..-.-..-|....+=-|+..+...--|-.
T Consensus 991 Ee~~~~l~~~l~~~eek~~~l~-k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 991 EERIRELQDDLQAEEEKAKSLN-KAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4555555556666555554433 345566666666655555555566666633222222333333333334444445555
Q ss_pred hHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 116 TCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 116 sCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
.+-|||-|.-....-..+.+.+.+++--.+-+|.
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~ 1103 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELE 1103 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777766666554444443
No 109
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=28.81 E-value=1.2e+02 Score=26.79 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
++|++|..-+. .|.=..||+|++.||-.-..+|+..|+.|=.+=|+|
T Consensus 271 e~r~~il~nmS-----~Raa~~l~eele~~gpV~~sdvE~Aq~~Iv~~~r~L 317 (334)
T PRK07194 271 ALRQAILRVMP-----KRQAQALEAQIERLGPVPLSRVEQARKEIMALVREL 317 (334)
T ss_pred HHHHHHHHHcc-----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 45666655553 233346899999999999999999999997766655
No 110
>PHA02109 hypothetical protein
Probab=28.33 E-value=1e+02 Score=27.37 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=39.3
Q ss_pred HhhhHHHHH-----HHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHH
Q 029490 74 ETKRLATIR-----EELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (192)
Q Consensus 74 etkRLa~Ir-----eELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaL 128 (192)
-|.|+++.+ +-||||+|.+ +|+..+--|||.+.+|+--+..--|.+-.+.+.-|
T Consensus 169 sTE~ID~~~~~~t~~~L~~~~~~L-~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~L 227 (233)
T PHA02109 169 STERIDQVERSHTGENLEGLTDKL-KQISELTIKLEALSDEACQVKHKILNLRAEVKRRL 227 (233)
T ss_pred cHHHHHHHHhccchhhhhhhhHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677766 4799999986 78999999999999998555555555555554433
No 111
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=28.08 E-value=2.5e+02 Score=20.76 Aligned_cols=55 Identities=16% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhhhhhccccc------------hhhHhhhHHHHHHHHHHhhh
Q 029490 79 ATIREELEALADPMRKEVAVVRKKIDSVNKELKPL------------GHTCQKKEREYKEALEAFNE 133 (192)
Q Consensus 79 a~IreELE~laDPmRKEV~~VRKkID~vNreLKPL------------gqsCqKKEkEYKEaLEAfNE 133 (192)
..++..|+.+.+-+.+=+..++.+|+.+.+.-..+ -..|.+=-+.+++++..||.
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~ 106 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNK 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665666666655544332111 12233445566777777764
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.93 E-value=2.6e+02 Score=27.31 Aligned_cols=93 Identities=18% Similarity=0.371 Sum_probs=67.5
Q ss_pred hHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhh--------------hhhhccccchhhHhhhHHHHHHHHHHhhh--h
Q 029490 71 VEEETKRLATIREELEALADPMRKEVAVVRKKID--------------SVNKELKPLGHTCQKKEREYKEALEAFNE--K 134 (192)
Q Consensus 71 vEeetkRLa~IreELE~laDPmRKEV~~VRKkID--------------~vNreLKPLgqsCqKKEkEYKEaLEAfNE--K 134 (192)
++....||..+-.+.|..-.|+=.|+...|.+.+ .+-.+++-+..-|+.||..|+.=...|-. |
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556677788888888888899999998885443 55667777888899999988875444432 2
Q ss_pred hhHHHHHHHHHHHhhhhhhhcchhhHHHHHHHH
Q 029490 135 NKEKVQLITKLMEVSVKYFSCSDRKMQELHFLI 167 (192)
Q Consensus 135 nkEKa~LVtkLmELv~ESErlRmkKLEEL~kl~ 167 (192)
..-....+.+++|+|+-..+++ +|++|.+
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~KQk----~eI~KIl 511 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRKQK----EEIEKIL 511 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHHHH----HHHHHHH
Confidence 2345678899999999887765 4555554
No 113
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=27.47 E-value=3e+02 Score=21.42 Aligned_cols=61 Identities=20% Similarity=0.430 Sum_probs=38.2
Q ss_pred hHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHH
Q 029490 71 VEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK 138 (192)
Q Consensus 71 vEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEK 138 (192)
|...-++++.+..++..+..-|-.+++.|+.+.+. +++|| +..=..+..+|.+|=+-|+..
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~---~~~~l----~~~i~~l~~~l~~y~e~~r~e 65 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEA---EIAPL----QNRIEYLEGLLQAYAEANRDE 65 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHH----HHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHh
Confidence 45566777777777777777777777777766544 33443 333445556677777766654
No 114
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.27 E-value=2.2e+02 Score=25.07 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=40.6
Q ss_pred HHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchh----hHHHHHHHHhhccc
Q 029490 97 AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDR----KMQELHFLILGSLS 172 (192)
Q Consensus 97 ~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmk----KLEEL~kl~~~~~~ 172 (192)
+..+.+++.+|..|.-|...++...++ +..|+.=-+....|.+-..+|+.-++ +|+.|-. .|++-...++|...
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e-~~~l~~~~~~~~~kl~rA~~Li~~L~-~E~~RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKE-KQELEEEIEETERKLERAEKLISGLS-GEKERWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHhhhc-chhhhHHHHHHHHHHHhcccHHHHH
Confidence 334444444444444444444444333 23333333444556666677777654 3666644 67777777777544
Q ss_pred ccch
Q 029490 173 SQSA 176 (192)
Q Consensus 173 ~~~~ 176 (192)
--+|
T Consensus 316 laaa 319 (344)
T PF12777_consen 316 LAAA 319 (344)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 115
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=26.92 E-value=2.3e+02 Score=25.62 Aligned_cols=54 Identities=15% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHHHhccchhHHHHHHHHHH----hhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhH
Q 029490 83 EELEALADPMRKEVAVVRKK----IDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKE 137 (192)
Q Consensus 83 eELE~laDPmRKEV~~VRKk----ID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkE 137 (192)
.++.++.+|.--. ..+... ++.+..++.-|...|.+=+..|+.+++.|.|..+.
T Consensus 296 ~~~~~l~~~~~~~-d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~ 353 (432)
T smart00498 296 TDLGGLSDPENLD-DKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD 353 (432)
T ss_pred HHHHhcCCCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3455665554111 223333 77788888888899999999999999999886663
No 116
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=26.87 E-value=2e+02 Score=19.15 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=26.8
Q ss_pred hhccccchhhHhhhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhhhhhh
Q 029490 107 NKELKPLGHTCQKKEREYKEALEAFNEKNK-EKVQLITKLMEVSVKYF 153 (192)
Q Consensus 107 NreLKPLgqsCqKKEkEYKEaLEAfNEKnk-EKa~LVtkLmELv~ESE 153 (192)
+...+.+...--.+-++|.+.+++--+.|- .|-.||..+-.|+....
T Consensus 4 w~~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 4 WKRFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 333444444444455555555555545553 46778888877776554
No 117
>PRK06285 chorismate mutase; Provisional
Probab=26.80 E-value=34 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhhhccccc
Q 029490 93 RKEVAVVRKKIDSVNKELKPL 113 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPL 113 (192)
.+++..+|+.||.++++|-.|
T Consensus 6 ~~~L~elR~~ID~ID~~iv~L 26 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDL 26 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999998655
No 118
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=26.78 E-value=2.5e+02 Score=20.31 Aligned_cols=36 Identities=14% Similarity=0.431 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHH
Q 029490 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLE 129 (192)
-+...|..++|.+|..-.-|.+.|..+......+++
T Consensus 72 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~ 107 (213)
T cd00176 72 PDAEEIQERLEELNQRWEELRELAEERRQRLEEALD 107 (213)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777788877777777654
No 119
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.69 E-value=4.1e+02 Score=22.72 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=32.8
Q ss_pred hHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhh
Q 029490 71 VEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (192)
Q Consensus 71 vEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqK 119 (192)
+++-..++..|.+.+-.=.+|.++++..+|+.+-.+.|-+.|+...+.+
T Consensus 159 l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~ 207 (324)
T PRK09546 159 IEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFAR 207 (324)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444544442212367889999999999999999998777754
No 120
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=26.67 E-value=1.3e+02 Score=28.25 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHH
Q 029490 47 RAKEEEIEKKKLE---VREKVQAHLGRVEEETKRLATIREELEALADPMRK 94 (192)
Q Consensus 47 ~AKEEEIErkKmE---VRekVqaqLGRvEeetkRLa~IreELE~laDPmRK 94 (192)
--+|-||+--+.| +||.|-----.+++--.||++.|+-||||-.|..|
T Consensus 67 y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kk 117 (389)
T PF06216_consen 67 YNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKK 117 (389)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 3578888888776 67777666667888889999999999999999764
No 121
>PRK01156 chromosome segregation protein; Provisional
Probab=26.44 E-value=6.1e+02 Score=24.67 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhhhccccch
Q 029490 95 EVAVVRKKIDSVNKELKPLG 114 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLg 114 (192)
+...+.++|...+..+.-++
T Consensus 364 ~~~~l~~~l~~~~~~~~~~~ 383 (895)
T PRK01156 364 DYNSYLKSIESLKKKIEEYS 383 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444333
No 122
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=26.44 E-value=31 Score=24.51 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhhhccccc
Q 029490 95 EVAVVRKKIDSVNKELKPL 113 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPL 113 (192)
|+..+|..||.++++|--|
T Consensus 1 ~l~~lR~~ID~ID~~ii~L 19 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILAL 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4677899999999998654
No 123
>PRK07248 hypothetical protein; Provisional
Probab=26.35 E-value=31 Score=24.59 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=26.9
Q ss_pred HHHHHHHhhhhhhccccchh---hHhhhHHHHHHHHH-HhhhhhhHHH
Q 029490 96 VAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKV 139 (192)
Q Consensus 96 V~~VRKkID~vNreLKPLgq---sCqKKEkEYKEaLE-AfNEKnkEKa 139 (192)
++.+|+.||.++++|-.|=. .|.++=-.||.+.. ..-...+|++
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~~v~d~~RE~~ 50 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKATGKPVLDTKREQV 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Confidence 56799999999999876632 34455556665532 2223444543
No 124
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.51 E-value=2.9e+02 Score=21.69 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
..++..+.++|+.+...++ .=.++.+.+++ .++++-+++|-+.-|-++
T Consensus 80 ~~~~~~l~~~i~~Le~~l~--------~L~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 127 (134)
T cd04779 80 AQEVQLVCDQIDGLEHRLK--------QLKPIASQTDR-AQRMKMTKELSQQVLTLI 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH-HHHHHHHHhcCHHhHHHH
Confidence 3444445555555443332 23455566666 666666666655554443
No 125
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=25.17 E-value=2.7e+02 Score=23.88 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhhhhccccchh------------------hHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGH------------------TCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgq------------------sCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
...|..+.+.||..|.++.||-. -|-+-||..=.+.+..+....- .+.+|+|-.|+
T Consensus 87 ~e~v~~LE~~id~y~~~l~~l~~FiLPGgs~~aA~lh~ARtv~RRAER~~V~l~~~~~~~~~~-l~YlNRLSdlL 160 (184)
T COG2096 87 EEDVKRLEKRIDAYNAELPPLKSFVLPGGSPAAAALHVARTVARRAERRLVALSREEEANLVV-LKYLNRLSDLL 160 (184)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHH
Confidence 57899999999999999998742 3667888888888877776555 66777776654
No 126
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=25.06 E-value=87 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=16.3
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccc
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALAD 90 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laD 90 (192)
.+++++..++..-..+...++-|+.|.+
T Consensus 7 ~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 34 (120)
T PF02996_consen 7 NLQQQIEQLEEQIEEYEEAKETLEELKK 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555556666666666655
No 127
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.48 E-value=2.2e+02 Score=23.73 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=55.9
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhh---hccccchhhHhhhHHHHHHHHHHhhh-----
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVN---KELKPLGHTCQKKEREYKEALEAFNE----- 133 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vN---reLKPLgqsCqKKEkEYKEaLEAfNE----- 133 (192)
....+.+..++.|...|....+.|+..-+-.+++++.+...|+.+. ++|.|+-.. +-+.|+.|-+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~-------m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ-------MIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCCC
Confidence 3455666777888888888889999999999999999998887664 577776543 3344555544
Q ss_pred hhhHHHHHHHHHHHhhh
Q 029490 134 KNKEKVQLITKLMEVSV 150 (192)
Q Consensus 134 KnkEKa~LVtkLmELv~ 150 (192)
.--|...-|..|-+++.
T Consensus 125 ~~~eR~~Rl~~L~~~l~ 141 (251)
T PF11932_consen 125 LLEERQERLARLRAMLD 141 (251)
T ss_pred ChHHHHHHHHHHHHhhh
Confidence 23344455555655543
No 128
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=24.44 E-value=3.7e+02 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhH
Q 029490 49 KEEEIEKKKLEVREKVQAHLGRVE 72 (192)
Q Consensus 49 KEEEIErkKmEVRekVqaqLGRvE 72 (192)
++.+..+.+.+.+.+....+-+++
T Consensus 499 ~~d~~~~~~~~~~~~~~~~~~~~~ 522 (595)
T PRK01433 499 KIDYTTRLLQEAVIEAEALIFNIE 522 (595)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444444443
No 129
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=24.42 E-value=34 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhccccch-hh--HhhhHHHHHHH
Q 029490 97 AVVRKKIDSVNKELKPLG-HT--CQKKEREYKEA 127 (192)
Q Consensus 97 ~~VRKkID~vNreLKPLg-qs--CqKKEkEYKEa 127 (192)
..+|..||.++++|=.|= +- ..++=-+||.+
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999986553 21 22333455544
No 130
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.24 E-value=4.2e+02 Score=22.08 Aligned_cols=90 Identities=23% Similarity=0.429 Sum_probs=47.6
Q ss_pred HHHhhhhhh-HHHHHHHHHHHHHHHHHHhhhhHHHhhh----HHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh
Q 029490 41 SALTTFRAK-EEEIEKKKLEVREKVQAHLGRVEEETKR----LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (192)
Q Consensus 41 sAls~F~AK-EEEIErkKmEVRekVqaqLGRvEeetkR----La~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq 115 (192)
.||.-.++. +..+.+-+.++-...+.++..+...+.+ +...++|+- -+|+.+..++..|+.+-....-|..
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~----~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELK----ELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHH----HHHhhhhHhhhhhhccccchhhhhh
Confidence 456666655 5566677777777777777665554444 444444442 2334444444444443333344444
Q ss_pred hHhhhHHHHHHHHHHhhhh
Q 029490 116 TCQKKEREYKEALEAFNEK 134 (192)
Q Consensus 116 sCqKKEkEYKEaLEAfNEK 134 (192)
...--+..|..-++.|+..
T Consensus 245 ~l~~le~~~~~~~~~~~~~ 263 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAE 263 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555543
No 131
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.23 E-value=3e+02 Score=20.38 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=37.6
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccchh--------------HHHH-HHHHHHhhhhhhccccchhhHhhhHHHHH
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALADPM--------------RKEV-AVVRKKIDSVNKELKPLGHTCQKKEREYK 125 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laDPm--------------RKEV-~~VRKkID~vNreLKPLgqsCqKKEkEYK 125 (192)
.+..++..+|.+-+...-..+||+.+.|-. +.|| ..|.++|+..+..++-|-+.=...++.++
T Consensus 21 ~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 21 AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888885421 2232 45566666665555544443333333333
No 132
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=24.12 E-value=41 Score=23.85 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.8
Q ss_pred HHHHHHhhhhhhccccc
Q 029490 97 AVVRKKIDSVNKELKPL 113 (192)
Q Consensus 97 ~~VRKkID~vNreLKPL 113 (192)
+.+|++||.++++|=-|
T Consensus 2 ~~lR~~ID~ID~~lv~L 18 (82)
T TIGR01803 2 ADIREAIDRIDLALVQA 18 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999998544
No 133
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=24.12 E-value=44 Score=30.34 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhhhhhhccc
Q 029490 92 MRKEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 92 mRKEV~~VRKkID~vNreLK 111 (192)
+.++++.+|+.||.++++|=
T Consensus 3 ~~~~L~~lR~~ID~ID~~ii 22 (386)
T PRK10622 3 SENPLLALREKISALDEKLL 22 (386)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 45677777888888887764
No 134
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=24.06 E-value=1.6e+02 Score=24.38 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=47.5
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHh
Q 029490 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (192)
Q Consensus 78 La~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAf 131 (192)
|..+|+-+-.+++-|.-||..+-=..+.+|+-+..|.-.-.|++.|.++....+
T Consensus 64 l~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~l 117 (138)
T PF03954_consen 64 LRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTL 117 (138)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHH
Confidence 556677778889999999999999999999999999999999999999865443
No 135
>PRK11032 hypothetical protein; Provisional
Probab=23.79 E-value=1.4e+02 Score=24.89 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhHHHhhhH-HHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhh
Q 029490 60 VREKVQAHLGRVEEETKRL-ATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (192)
Q Consensus 60 VRekVqaqLGRvEeetkRL-a~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqs 116 (192)
+=++|...|...+++.+++ ...++=+...+|=+|.|++-|. +-|.|+|+-++++
T Consensus 11 ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~---~ylkRDL~ef~~~ 65 (160)
T PRK11032 11 LVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLIT---RAVRRDLEEFARS 65 (160)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHH
Confidence 4467778888888776665 6667777788888999999886 5677888777764
No 136
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=23.58 E-value=47 Score=31.59 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=30.7
Q ss_pred hccch-----hHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHH
Q 029490 87 ALADP-----MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEA 127 (192)
Q Consensus 87 ~laDP-----mRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEa 127 (192)
.|+|| +|-||..||.|=|-+-.-=+-|-..|.-.|.|.|..
T Consensus 293 SmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai 338 (394)
T KOG0225|consen 293 SMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAI 338 (394)
T ss_pred ccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHH
Confidence 58999 799999999876665544445556677788888753
No 137
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.91 E-value=8.7e+02 Score=25.22 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 029490 51 EEIEKKKLEVREKVQA 66 (192)
Q Consensus 51 EEIErkKmEVRekVqa 66 (192)
|.|++-|.|+-.++.+
T Consensus 511 eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 511 EKIEKLKDEFNKRLSR 526 (762)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4588888777666554
No 138
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=22.78 E-value=2.5e+02 Score=18.96 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHH
Q 029490 65 QAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITK 144 (192)
Q Consensus 65 qaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtk 144 (192)
...|+--++--..+..|+.+...-.+|++......++-.+ -+-...++. .. .-+.+..+..++.-..-+.....
T Consensus 10 ~~~L~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T PF07813_consen 10 KEELNLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-PSFDEAAPE----AL-AAMAEMMELRAEMMEERAKAQHA 83 (100)
T ss_dssp TTTS--THHHHHHHHHHHHHHCTTS------HHHHHHHHH-SS--HHHHH----HH-H--HHCHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-ccCChhHHH----HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777777777777777322222222111 111111111 11 11134444455555555666677
Q ss_pred HHHhhhhhhhcchhhH
Q 029490 145 LMEVSVKYFSCSDRKM 160 (192)
Q Consensus 145 LmELv~ESErlRmkKL 160 (192)
+..++++.-|.+.++|
T Consensus 84 ~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 84 LYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHTTS-HHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHh
Confidence 7777887777666554
No 139
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.72 E-value=80 Score=22.51 Aligned_cols=21 Identities=10% Similarity=0.434 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHhhhhhhcc
Q 029490 90 DPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 90 DPmRKEV~~VRKkID~vNreL 110 (192)
+-.|+|...||+-|+.+|.-+
T Consensus 17 ~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666655443
No 140
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.60 E-value=6.4e+02 Score=26.71 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHhccc----hhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhH
Q 029490 62 EKVQAHLGRVEEETKRLATIREELEALAD----PMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKE 137 (192)
Q Consensus 62 ekVqaqLGRvEeetkRLa~IreELE~laD----PmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkE 137 (192)
+.++..|..++++-..|..|......... ---.++-+.+.+++.+.+++.-+-..+...+.++.++-+......++
T Consensus 233 ~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 312 (1353)
T TIGR02680 233 DEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALERE 312 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhcchhh
Q 029490 138 KVQLITKLMEVSVKYFSCSDRK 159 (192)
Q Consensus 138 Ka~LVtkLmELv~ESErlRmkK 159 (192)
+..+=+.+-+| ..|+..+..+
T Consensus 313 ~~~l~~~~~~l-~~~~a~~~~~ 333 (1353)
T TIGR02680 313 ADALRTRLEAL-QGSPAYQDAE 333 (1353)
T ss_pred HHHHHHHHHHh-cCCHHHHHHH
No 141
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=22.55 E-value=31 Score=24.54 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHhhhhhhccccch-h--hHhhhHHHHHHHHH-HhhhhhhHHHH
Q 029490 97 AVVRKKIDSVNKELKPLG-H--TCQKKEREYKEALE-AFNEKNKEKVQ 140 (192)
Q Consensus 97 ~~VRKkID~vNreLKPLg-q--sCqKKEkEYKEaLE-AfNEKnkEKa~ 140 (192)
..+|+.||.++++|-.|= + .|.++=-+||.+.- +.....+|+..
T Consensus 2 ~~lR~~ID~ID~~il~Ll~~R~~~~~~ia~~K~~~~~~v~d~~RE~~v 49 (83)
T TIGR01799 2 EDLRGEIDGVDQELLHLLAKRLELVAQVGKVKHAAGLPIYAPEREAAM 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 468999999999987653 2 34555566776532 33344555543
No 142
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.49 E-value=51 Score=29.76 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhhhhhccccc
Q 029490 92 MRKEVAVVRKKIDSVNKELKPL 113 (192)
Q Consensus 92 mRKEV~~VRKkID~vNreLKPL 113 (192)
|..++..+|+.||.++++|=-|
T Consensus 2 ~~~~L~~lR~~ID~ID~eIl~L 23 (360)
T PRK12595 2 MNEELEQLRKEIDEINLQLLEL 23 (360)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888887543
No 143
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=22.45 E-value=6e+02 Score=28.80 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=66.0
Q ss_pred hhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 70 RvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
.+|+.-.|+...+++||.--.-+..++...-++--.++++.+-+-+.|+..++.+.+---+..+-..||..+..++-.|=
T Consensus 891 ~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~ 970 (1930)
T KOG0161|consen 891 EAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLE 970 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888888888888888888888888888888888887777766677777777777777777666
Q ss_pred hhhhh
Q 029490 150 VKYFS 154 (192)
Q Consensus 150 ~ESEr 154 (192)
.+...
T Consensus 971 ~e~~~ 975 (1930)
T KOG0161|consen 971 EEINS 975 (1930)
T ss_pred HHHHH
Confidence 65554
No 144
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=22.38 E-value=31 Score=24.34 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhhccccchh---hHhhhHHHHHHH
Q 029490 97 AVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (192)
Q Consensus 97 ~~VRKkID~vNreLKPLgq---sCqKKEkEYKEa 127 (192)
+.+|+.||.++++|-.|=. .|..+=-+||.+
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999876632 344555566655
No 145
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.30 E-value=2e+02 Score=24.87 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=38.2
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh-
Q 029490 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH- 115 (192)
Q Consensus 37 e~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq- 115 (192)
|.+|.+... +-|||.-+.-.||.|++|+..=.- .+-|++.++.+++++...-++|+|+-+
T Consensus 89 Ey~R~~~~e-~~kee~~~~e~~elr~~~~~l~~~------------------i~~~~~~~~~L~~~l~~~~~el~~~~q~ 149 (181)
T KOG3335|consen 89 EYWRQARKE-RKKEEKRKQEIMELRLKVEKLENA------------------IAELTKFFSQLHSKLNKPESELKPIRQA 149 (181)
T ss_pred hhHHhhhcc-hhhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCccccccccccC
Confidence 445555443 335666677778888877543332 234566666666777777777777643
Q ss_pred hHh
Q 029490 116 TCQ 118 (192)
Q Consensus 116 sCq 118 (192)
+|.
T Consensus 150 ~p~ 152 (181)
T KOG3335|consen 150 PPN 152 (181)
T ss_pred CCC
Confidence 343
No 146
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.20 E-value=5.8e+02 Score=22.96 Aligned_cols=100 Identities=22% Similarity=0.318 Sum_probs=68.0
Q ss_pred HHHhhhhhhHHHHHHHH---HHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhh---cccc--
Q 029490 41 SALTTFRAKEEEIEKKK---LEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK---ELKP-- 112 (192)
Q Consensus 41 sAls~F~AKEEEIErkK---mEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNr---eLKP-- 112 (192)
+.++.|=.+=++|..-- -+--++|+.+=..+--.+.....|+++|+...|-.++=..+||.|+...-+ +..+
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 56777877777765432 233344555447777778888899999999999999999999999876544 3333
Q ss_pred --chhhHhhh-------------HHHHHHHHHHhhhhhhHHHH
Q 029490 113 --LGHTCQKK-------------EREYKEALEAFNEKNKEKVQ 140 (192)
Q Consensus 113 --LgqsCqKK-------------EkEYKEaLEAfNEKnkEKa~ 140 (192)
-+.+|.++ =.+|..+-.-|.+++|++++
T Consensus 113 ~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~ 155 (297)
T KOG0810|consen 113 RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ 155 (297)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333322 23566666677778888765
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=22.11 E-value=3.7e+02 Score=24.83 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHhccchhHHH----HHHHHHHhhhh
Q 029490 75 TKRLATIREELEALADPMRKE----VAVVRKKIDSV 106 (192)
Q Consensus 75 tkRLa~IreELE~laDPmRKE----V~~VRKkID~v 106 (192)
+|+|++++.|--.|..-+-.| |..++|+|+.+
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L 147 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL 147 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456666666655555555433 55666777665
No 148
>PRK09239 chorismate mutase; Provisional
Probab=22.06 E-value=54 Score=24.88 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhhccccch-h--hHhhhHHHHHHH
Q 029490 95 EVAVVRKKIDSVNKELKPLG-H--TCQKKEREYKEA 127 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLg-q--sCqKKEkEYKEa 127 (192)
.+..+|+.||.++++|=-|= + .|.++=-+||.+
T Consensus 11 ~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~ 46 (104)
T PRK09239 11 ELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAE 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999986542 2 233444455543
No 149
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.55 E-value=51 Score=29.13 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhhhhccccchh---hHhhhHHHHHHH
Q 029490 92 MRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (192)
Q Consensus 92 mRKEV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEa 127 (192)
|..++..+|+.||.++++|-.|=. .|-++=-+||..
T Consensus 1 ~~~~L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~ 39 (374)
T PRK11199 1 MVAELTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSR 39 (374)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999998876532 244444555554
No 150
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.53 E-value=1.1e+03 Score=25.99 Aligned_cols=116 Identities=25% Similarity=0.337 Sum_probs=55.6
Q ss_pred chHHhhHHHHhhhhhhHH-------HHHHHHHHHHHHHHH---HhhhhHHHhhhHHHHHH-------HHHhccchhHHHH
Q 029490 34 DDEEMSRSALTTFRAKEE-------EIEKKKLEVREKVQA---HLGRVEEETKRLATIRE-------ELEALADPMRKEV 96 (192)
Q Consensus 34 eeEe~srsAls~F~AKEE-------EIErkKmEVRekVqa---qLGRvEeetkRLa~Ire-------ELE~laDPmRKEV 96 (192)
++.+-...||+.-.-.-+ +.+..--+.|+++.. +|-+++-+++|++..-+ ++|...++..-++
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~ 857 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK 857 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH
Confidence 344556666665433322 334444455666544 45567777888887444 3444433333222
Q ss_pred HHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhh--HHHHHHHHHHHhhhhhhhcchhhHHHH
Q 029490 97 AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK--EKVQLITKLMEVSVKYFSCSDRKMQEL 163 (192)
Q Consensus 97 ~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnk--EKa~LVtkLmELv~ESErlRmkKLEEL 163 (192)
+.|+-+-.....-++||.++- ++..| +..+|-++++++-+|.=+.--.|++.+
T Consensus 858 -----------~~l~~~~~~ie~l~kE~e~~q---e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~ 912 (1293)
T KOG0996|consen 858 -----------KRLKELEEQIEELKKEVEELQ---EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKI 912 (1293)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHH
Confidence 222223233333344444443 22223 234556666666666554444444433
No 151
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.39 E-value=4.8e+02 Score=24.06 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhH---HHHHHHHHHhhhhhhcc
Q 029490 51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR---KEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 51 EEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmR---KEV~~VRKkID~vNreL 110 (192)
+|.-+-|-++++....-=|-+|+=-.||..|+-|+-.|-.-.+ -||..++||.|.+--.+
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 4444455566665555555555556666666665544433333 37888888887665544
No 152
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.18 E-value=3e+02 Score=19.24 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=11.7
Q ss_pred hhHhhhHHHHHHHHHHhhh
Q 029490 115 HTCQKKEREYKEALEAFNE 133 (192)
Q Consensus 115 qsCqKKEkEYKEaLEAfNE 133 (192)
...+|==++|+.||..|..
T Consensus 71 ~~~~KL~~df~~~l~~fq~ 89 (102)
T PF14523_consen 71 LQREKLSRDFKEALQEFQK 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555677777777754
No 153
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=20.46 E-value=4.6e+02 Score=21.43 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHH
Q 029490 58 LEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVR 100 (192)
Q Consensus 58 mEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VR 100 (192)
.+-++.++..|.+++...+.......+-+.+.+-.++|...|.
T Consensus 78 ~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v~ 120 (168)
T PF06102_consen 78 PEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKVK 120 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999888888888887777777666554
No 154
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.45 E-value=3e+02 Score=18.96 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=17.4
Q ss_pred cchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 112 PLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 112 PLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
.|..-|..+.....+-++.++..-..=..++...-+++
T Consensus 65 ~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 65 DLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444333333333333333
No 155
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.42 E-value=4.7e+02 Score=21.58 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRK 101 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRK 101 (192)
++...|..++..-...+.++++.+..-.-.|.|...||.
T Consensus 45 ~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~ 83 (155)
T PRK06569 45 NIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKK 83 (155)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 156
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.42 E-value=8.5e+02 Score=24.16 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=26.3
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHhccchhHHHH-------HHHHHHhhhhhhccccchhhH
Q 029490 64 VQAHLGRVEEETKRLATIREELEALADPMRKEV-------AVVRKKIDSVNKELKPLGHTC 117 (192)
Q Consensus 64 VqaqLGRvEeetkRLa~IreELE~laDPmRKEV-------~~VRKkID~vNreLKPLgqsC 117 (192)
+++.|...+++...|....+++..-..-+.+|. +..+.||..+.-+++-|.+.-
T Consensus 176 l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 176 LEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444333333333 334555555555555444433
No 157
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.13 E-value=1.2e+02 Score=30.77 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=49.9
Q ss_pred hhhhhhccccchh--hHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHhhcccccchHHHH
Q 029490 103 IDSVNKELKPLGH--TCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILGSLSSQSALWLF 180 (192)
Q Consensus 103 ID~vNreLKPLgq--sCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEEL~kl~~~~~~~~~~~~~~ 180 (192)
.||+=+-|-||+. .-.-|-=-=+++|+||-.|+-|=|.=| +--|-.- +-|-++.+=++-|+-+++.
T Consensus 327 femA~saL~pLs~edi~vlk~v~~~d~laa~arkdpewAikv------iiks~~~--~nlKeIK~ELVpsli~e~d---- 394 (711)
T COG1747 327 FEMAFSALQPLSKEDIFVLKRVGDPDDLAAFARKDPEWAIKV------IIKSLGP--KNLKEIKQELVPSLIPEGD---- 394 (711)
T ss_pred HHHHHHHhCcCCccceehhhhcCCHHHHHHHHhhChHHHHHH------HHHhcCC--ccHHHHHHHHHHhhCChhh----
Confidence 4778888999982 112222223578999999998866422 2222222 6677777778888888864
Q ss_pred HhhhhhHhhhc
Q 029490 181 YRMNSWWAKAR 191 (192)
Q Consensus 181 ~~~~~~~~~~~ 191 (192)
.||||.+|+
T Consensus 395 --WnsWsqkAK 403 (711)
T COG1747 395 --WNSWSQKAK 403 (711)
T ss_pred --hhHHHHHHH
Confidence 499999986
Done!