Query 029490
Match_columns 192
No_of_seqs 30 out of 32
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 22:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 91.6 2.9 9.9E-05 35.6 11.9 17 87-103 495-511 (597)
2 1fio_A SSO1 protein; four heli 87.0 5.2 0.00018 30.0 9.1 29 80-108 46-74 (196)
3 3oja_B Anopheles plasmodium-re 81.4 1.5 5E-05 37.5 4.3 71 78-148 507-577 (597)
4 2dfs_A Myosin-5A; myosin-V, in 76.3 5 0.00017 39.2 6.7 76 69-144 935-1013(1080)
5 3oja_A Leucine-rich immune mol 75.7 35 0.0012 28.6 11.0 55 52-106 378-447 (487)
6 1ez3_A Syntaxin-1A; three heli 73.9 20 0.00069 25.1 7.8 30 80-109 47-76 (127)
7 3vkg_A Dynein heavy chain, cyt 71.6 28 0.00094 38.4 11.4 54 90-143 2010-2063(3245)
8 2efk_A CDC42-interacting prote 68.7 39 0.0013 26.2 12.7 34 114-147 178-212 (301)
9 3uul_A Utrophin; spectrin repe 67.9 24 0.00081 23.4 8.5 80 37-131 36-115 (118)
10 1ecm_A Endo-oxabicyclic transi 66.7 1.9 6.4E-05 30.8 1.1 38 88-127 1-41 (109)
11 2zqm_A Prefoldin beta subunit 66.5 29 0.001 24.0 7.6 66 63-128 24-104 (117)
12 2i0m_A Phosphate transport sys 63.4 43 0.0015 24.8 9.3 97 47-147 46-153 (216)
13 2dfs_A Myosin-5A; myosin-V, in 63.0 33 0.0011 33.6 9.2 25 93-117 990-1014(1080)
14 1t72_A Phosphate transport sys 61.2 48 0.0016 24.6 10.7 100 47-149 50-159 (227)
15 3uun_A Dystrophin; triple heli 58.8 36 0.0012 22.4 8.2 80 37-131 36-115 (119)
16 3haj_A Human pacsin2 F-BAR; pa 56.8 97 0.0033 26.8 12.9 63 93-162 184-246 (486)
17 1s94_A S-syntaxin; three helix 55.7 45 0.0015 25.0 7.1 32 78-109 76-107 (180)
18 2efl_A Formin-binding protein 53.1 76 0.0026 24.4 13.2 48 115-162 186-234 (305)
19 3pkr_A FLIG, flagellar motor s 50.8 16 0.00055 30.8 4.3 52 59-115 217-268 (279)
20 4fhr_B Flagellar motor switch 50.5 18 0.0006 29.2 4.3 47 59-110 160-206 (216)
21 3na7_A HP0958; flagellar bioge 50.2 60 0.0021 25.9 7.3 11 147-157 176-186 (256)
22 4i0x_B ESAT-6-like protein MAB 50.1 33 0.0011 23.5 5.1 58 83-146 14-73 (103)
23 4dzo_A Mitotic spindle assembl 46.7 14 0.00048 27.9 3.0 36 94-129 4-39 (123)
24 2ke4_A CDC42-interacting prote 46.2 42 0.0014 24.5 5.4 51 61-111 17-79 (98)
25 1sum_B Phosphate transport sys 45.1 98 0.0034 23.4 10.7 100 47-150 46-156 (235)
26 3euj_A Chromosome partition pr 44.7 9.3 0.00032 34.2 2.0 47 71-117 232-286 (483)
27 1s94_A S-syntaxin; three helix 44.6 96 0.0033 23.2 8.1 91 63-157 47-147 (180)
28 1fxk_A Prefoldin; archaeal pro 43.2 75 0.0026 21.6 7.7 65 63-127 19-98 (107)
29 3hjl_A Flagellar motor switch 42.6 25 0.00086 30.1 4.3 48 59-111 273-320 (329)
30 3pe0_A Plectin; cytoskeleton, 42.4 81 0.0028 25.7 7.1 52 77-131 66-117 (283)
31 1ez3_A Syntaxin-1A; three heli 39.4 94 0.0032 21.6 8.8 87 64-154 17-113 (127)
32 1xwm_A PHOU, phosphate uptake 39.3 1.1E+02 0.0039 22.5 10.5 99 48-149 47-155 (217)
33 3abh_A Pacsin2, protein kinase 39.3 1.4E+02 0.0048 23.5 13.2 57 103-162 194-253 (312)
34 4etp_A Kinesin-like protein KA 37.9 41 0.0014 29.2 4.9 52 97-148 6-57 (403)
35 2d8d_A Aroag, phospho-2-dehydr 37.1 12 0.0004 25.7 1.1 53 95-148 4-60 (90)
36 3rmi_A Chorismate mutase prote 35.8 16 0.00054 26.8 1.7 60 88-148 5-69 (114)
37 2a1d_D Staphylocoagulase; prot 34.0 2.4E+02 0.0082 25.2 9.2 89 76-168 117-224 (329)
38 3bvo_A CO-chaperone protein HS 33.9 1.8E+02 0.006 23.1 7.7 23 75-97 90-112 (207)
39 2gtv_X CM, chorismate mutase; 32.4 28 0.00096 25.5 2.6 53 95-148 4-68 (104)
40 2x3v_A Syndapin I, protein kin 31.4 2E+02 0.0068 22.9 13.6 70 93-169 182-251 (337)
41 3iv1_A Tumor susceptibility ge 30.5 67 0.0023 23.2 4.2 58 60-128 12-76 (78)
42 2eqb_B RAB guanine nucleotide 30.5 1.2E+02 0.0042 22.6 5.8 39 91-136 2-40 (97)
43 2ccy_A Cytochrome C; electron 30.1 36 0.0012 24.7 2.8 50 75-131 68-125 (128)
44 3qwe_A GMIP, GEM-interacting p 29.7 2.6E+02 0.0088 23.7 10.9 107 47-153 104-226 (279)
45 2v0o_A FCHO2, FCH domain only 29.6 1.8E+02 0.0063 22.0 13.2 42 119-160 174-215 (276)
46 2vkl_A RV0948C/MT0975; helical 29.3 15 0.00053 25.9 0.7 57 91-148 9-69 (90)
47 3htk_A Structural maintenance 29.3 1.1E+02 0.0037 19.3 5.2 45 111-155 1-45 (60)
48 3r2p_A Apolipoprotein A-I; amp 29.3 1.9E+02 0.0064 22.0 8.6 78 57-137 91-173 (185)
49 1jzp_A Skeletal dihydropydrine 28.9 31 0.0011 20.7 1.9 15 45-59 3-17 (26)
50 4ioe_A Secreted protein ESXB; 28.4 1.2E+02 0.0041 19.5 4.9 33 83-115 12-44 (93)
51 2w83_C C-JUN-amino-terminal ki 27.7 1.1E+02 0.0036 22.4 4.9 38 119-156 13-50 (77)
52 1nu7_D Staphylocoagulase; thro 26.7 3.2E+02 0.011 23.9 9.3 89 76-168 117-224 (282)
53 3ljc_A ATP-dependent protease 26.3 1.6E+02 0.0054 23.0 6.1 41 46-86 206-249 (252)
54 3i2w_A Syndapin, LD46328P; EFC 25.6 2.4E+02 0.0081 21.9 10.3 54 109-162 178-231 (290)
55 2p2u_A HOST-nuclease inhibitor 25.4 2.3E+02 0.008 21.8 7.3 63 68-137 15-77 (171)
56 3oja_A Leucine-rich immune mol 25.4 1.5E+02 0.005 24.8 6.1 37 47-83 359-395 (487)
57 1go4_E MAD1 (mitotic arrest de 25.3 36 0.0012 25.5 2.1 19 92-110 10-28 (100)
58 3lbx_A Spectrin alpha chain, e 25.2 92 0.0031 22.9 4.3 34 95-128 128-161 (161)
59 1ybz_A Chorismate mutase; cons 24.5 26 0.0009 24.9 1.2 48 94-141 17-68 (91)
60 3na7_A HP0958; flagellar bioge 24.4 2.7E+02 0.0091 22.1 16.3 78 75-152 73-155 (256)
61 1q08_A Zn(II)-responsive regul 23.9 1E+02 0.0034 20.5 4.0 30 59-88 39-68 (99)
62 4afl_A P29ING4, inhibitor of g 23.6 1.9E+02 0.0064 20.1 8.4 33 119-151 59-94 (104)
63 3m3w_A Pacsin3, protein kinase 23.4 1.1E+02 0.0039 24.8 4.9 51 112-162 194-244 (320)
64 1cun_A Protein (alpha spectrin 23.4 2.1E+02 0.0071 20.5 6.2 35 96-130 74-108 (213)
65 1dn1_B Syntaxin 1A, syntaxin b 23.3 2.9E+02 0.01 22.2 9.9 31 80-110 70-100 (267)
66 3u06_A Protein claret segregat 23.0 1.1E+02 0.0038 26.7 5.1 52 90-148 6-57 (412)
67 3r6n_A Desmoplakin; spectrin r 22.4 1.7E+02 0.0057 25.9 6.1 45 84-131 158-202 (450)
68 2ctr_A DNAJ homolog subfamily 21.4 1E+02 0.0034 20.6 3.6 46 50-95 21-66 (88)
69 2wt7_B Transcription factor MA 21.4 2.4E+02 0.0083 20.5 6.0 58 53-115 26-83 (90)
70 2ve7_C Kinetochore protein NUF 21.3 1.3E+02 0.0045 24.6 4.9 57 59-119 138-194 (250)
71 1fpo_A HSC20, chaperone protei 20.9 2.8E+02 0.0095 21.1 7.9 23 74-96 47-69 (171)
72 3k29_A Putative uncharacterize 20.2 3.5E+02 0.012 22.0 7.5 71 40-129 77-147 (169)
73 3he5_A Synzip1; heterodimeric 20.0 43 0.0015 22.6 1.4 14 91-104 35-48 (49)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.58 E-value=2.9 Score=35.65 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=6.4
Q ss_pred hccchhHHHHHHHHHHh
Q 029490 87 ALADPMRKEVAVVRKKI 103 (192)
Q Consensus 87 ~laDPmRKEV~~VRKkI 103 (192)
...|.+.+....+.+.+
T Consensus 495 ~~~~~~~~~~~~l~~~~ 511 (597)
T 3oja_B 495 LPKDGLARSSDNLNKVF 511 (597)
T ss_dssp CCCCSSSCHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHH
Confidence 33343333333333333
No 2
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=86.99 E-value=5.2 Score=29.98 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=15.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhhh
Q 029490 80 TIREELEALADPMRKEVAVVRKKIDSVNK 108 (192)
Q Consensus 80 ~IreELE~laDPmRKEV~~VRKkID~vNr 108 (192)
.++++|+.+.+-+.+=+..++++|..+..
T Consensus 46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~ 74 (196)
T 1fio_A 46 HLRHSLDNFVAQATDLQFKLKNEIKSAQR 74 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555555555554443
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.44 E-value=1.5 Score=37.50 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 029490 78 LATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 78 La~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL 148 (192)
+....+.++....+.-.+.....+.++.-+.+++-+.+.+.+=|+.+++.-+..-+-++|-+++-.++.+|
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444455555554555444444444444444444444444444444444444333
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.27 E-value=5 Score=39.19 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=27.9
Q ss_pred hhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhh---ccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHH
Q 029490 69 GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK---ELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITK 144 (192)
Q Consensus 69 GRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNr---eLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtk 144 (192)
.|++++.++...+.+++..+.+++-+|++.+++.++.+.. |++-+-......+.|..+.-+.+.+-++||-.|-.+
T Consensus 935 ~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555666666666665544332 222222333334444444444444444444444333
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.69 E-value=35 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH---------------HhhhHHHHHHHHHhccchhHHHHHHHHHHhhhh
Q 029490 52 EIEKKKLEVREKVQAHLGRVEE---------------ETKRLATIREELEALADPMRKEVAVVRKKIDSV 106 (192)
Q Consensus 52 EIErkKmEVRekVqaqLGRvEe---------------etkRLa~IreELE~laDPmRKEV~~VRKkID~v 106 (192)
.+.+..-+.+..++...+++|. -.++...+..++|..=+-+++++...+..|+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH
Confidence 3445555667777788888773 334455556666666666777777777666544
No 6
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=73.88 E-value=20 Score=25.07 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=16.7
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhhhc
Q 029490 80 TIREELEALADPMRKEVAVVRKKIDSVNKE 109 (192)
Q Consensus 80 ~IreELE~laDPmRKEV~~VRKkID~vNre 109 (192)
.++++|+.+.+-..+=...|+.+|+.+.++
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655555555555555555554443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.64 E-value=28 Score=38.39 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHH
Q 029490 90 DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLIT 143 (192)
Q Consensus 90 DPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVt 143 (192)
.|.|.+++..-+..+.++.+|.-.-...+.-|.....--+.|++...||..|-.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999888888888888776666666666665555667776666665543
No 8
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=68.67 E-value=39 Score=26.19 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=22.2
Q ss_pred hhhHhhhHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Q 029490 114 GHTCQKKEREYKEALEAFNEK-NKEKVQLITKLME 147 (192)
Q Consensus 114 gqsCqKKEkEYKEaLEAfNEK-nkEKa~LVtkLmE 147 (192)
.+.|.+-..+|+.++.++|.- +..=.+-+..+++
T Consensus 178 ~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~ 212 (301)
T 2efk_A 178 SHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFD 212 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667789999999999987 4333333333333
No 9
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=67.90 E-value=24 Score=23.42 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=56.4
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhh
Q 029490 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (192)
Q Consensus 37 e~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqs 116 (192)
+.-+.-+..+++-+.+|...+-.|..=+ +.. +.|=.-+.|.-.+...|+.+++.+|..-.-|...
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~--------~~g-------~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVL--------QAG-------NQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVE 100 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-------HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-------HHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777777776654443221 112 2222335566678889999999999999999999
Q ss_pred HhhhHHHHHHHHHHh
Q 029490 117 CQKKEREYKEALEAF 131 (192)
Q Consensus 117 CqKKEkEYKEaLEAf 131 (192)
|..+.+...+||..+
T Consensus 101 ~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 101 SMERQSRLHDALMEL 115 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 10
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=66.71 E-value=1.9 Score=30.76 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=25.1
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccchh---hHhhhHHHHHHH
Q 029490 88 LADPMRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEA 127 (192)
Q Consensus 88 laDPmRKEV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEa 127 (192)
|+|| .++..+|+.||.++++|--|=. .|.++=-+||..
T Consensus 1 M~~~--~~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 1 MTSE--NPLLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 3588999999999999876543 455666667754
No 11
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.50 E-value=29 Score=23.97 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=42.9
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccch---------------hHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHH
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALADP---------------MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEA 127 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laDP---------------mRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEa 127 (192)
.+..++..++.+-+.+.-.-+||+.+.|. .-.=+..|-++++.+..+++-|-..+...++++++.
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888889999988652 222234556666666666666665555555555544
Q ss_pred H
Q 029490 128 L 128 (192)
Q Consensus 128 L 128 (192)
-
T Consensus 104 k 104 (117)
T 2zqm_A 104 T 104 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=63.40 E-value=43 Score=24.80 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh---hHHHhhhHHH---HHHHHHhccchhHHHHHHHHHHhhh-----hhhccccchh
Q 029490 47 RAKEEEIEKKKLEVREKVQAHLGR---VEEETKRLAT---IREELEALADPMRKEVAVVRKKIDS-----VNKELKPLGH 115 (192)
Q Consensus 47 ~AKEEEIErkKmEVRekVqaqLGR---vEeetkRLa~---IreELE~laDPmRKEV~~VRKkID~-----vNreLKPLgq 115 (192)
...|++|.+...++.+.+..-|.+ +....+.+.. |=..||.+||=... ++.+=.++.. ...+|.+++.
T Consensus 46 ~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m~~ 124 (216)
T 2i0m_A 46 INKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAG-IAKAVLQLKENQLAPDEEQLHQMGK 124 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCSSCCC--CHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCchHHHHHHHHHH
Confidence 456778888888888888765443 3444555443 44699999998875 5543333221 1133444555
Q ss_pred hHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 029490 116 TCQKKEREYKEALEAFNEKNKEKVQLITKLME 147 (192)
Q Consensus 116 sCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmE 147 (192)
.| ..-++.|++||...+.+.|.-|-..-+
T Consensus 125 ~v---~~~l~~a~~a~~~~d~~~a~~v~~~d~ 153 (216)
T 2i0m_A 125 LS---LSMLADLLVAFPLHQASKAISIAQKDE 153 (216)
T ss_dssp HH---HHHHHHHHHHGGGTCHHHHHHHHHTHH
T ss_pred HH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55 457899999999999887765555433
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.01 E-value=33 Score=33.57 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhhhccccchhhH
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGHTC 117 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgqsC 117 (192)
.+|++..++.++..++|.+-|-+.|
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444443333
No 14
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=61.18 E-value=48 Score=24.63 Aligned_cols=100 Identities=6% Similarity=0.112 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh---hhHHHhhhH---HHHHHHHHhccchhHHHHHHHHHHhhh----hhhccccchhh
Q 029490 47 RAKEEEIEKKKLEVREKVQAHLG---RVEEETKRL---ATIREELEALADPMRKEVAVVRKKIDS----VNKELKPLGHT 116 (192)
Q Consensus 47 ~AKEEEIErkKmEVRekVqaqLG---RvEeetkRL---a~IreELE~laDPmRKEV~~VRKkID~----vNreLKPLgqs 116 (192)
...+++|.+...++++.+...+. -+....+.+ -.|-..||.+||=...=...+.+..+. +..+|..++..
T Consensus 50 ~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~~~el~~m~~~ 129 (227)
T 1t72_A 50 IKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAEEPPLKPYVNINFMSEI 129 (227)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHH
Confidence 35677888888888888776554 333344443 346679999999988633344444332 23345555555
Q ss_pred HhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 117 CQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 117 CqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
| ..-++.|++||...+.+.|.-|..+-+-|
T Consensus 130 v---~~ml~~a~~a~~~~d~~~a~~v~~~d~~i 159 (227)
T 1t72_A 130 V---KEMVNDSVISFIQQDTLLAKKVIEKDDTV 159 (227)
T ss_dssp H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5 56789999999999988776665554433
No 15
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=58.80 E-value=36 Score=22.38 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=53.9
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhh
Q 029490 37 EMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT 116 (192)
Q Consensus 37 e~srsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqs 116 (192)
+.-..-+..+++-+.+|...+-.|.. |-+....| =.-+.|.--+...|+.+++.+|..-.-|...
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~--------~~~~g~~L-------~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~ 100 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGN--------ILQLGSKL-------IGTGKLSEDEETEVQEQMNLLNSRWECLRVA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHH-------HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777766544432 22222222 1123344456778999999999999999999
Q ss_pred HhhhHHHHHHHHHHh
Q 029490 117 CQKKEREYKEALEAF 131 (192)
Q Consensus 117 CqKKEkEYKEaLEAf 131 (192)
|..+.+...+||..+
T Consensus 101 ~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 101 SMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 16
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=56.75 E-value=97 Score=26.76 Aligned_cols=63 Identities=13% Similarity=0.293 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
.|++.-++.|.+... +.|++-+.+|+.++.++|.-+..=.+.+..+++-+-+-|..|+..|-+
T Consensus 184 ~k~~eK~~~k~~k~~-------~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 184 PEQLKKLQDKIEKCK-------QDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp SHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777766554 457888999999999999886554444555555555556667777644
No 17
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=55.71 E-value=45 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhhhc
Q 029490 78 LATIREELEALADPMRKEVAVVRKKIDSVNKE 109 (192)
Q Consensus 78 La~IreELE~laDPmRKEV~~VRKkID~vNre 109 (192)
...++++|+.+.+-..+=...|+++|..+.+.
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666655543
No 18
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=53.07 E-value=76 Score=24.41 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=29.4
Q ss_pred hhHhhhHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 115 HTCQKKEREYKEALEAFNEK-NKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 115 qsCqKKEkEYKEaLEAfNEK-nkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
+.|.+-..+|+.++.++|.- +..=.+.+..+++-+-+-|..|...|-+
T Consensus 186 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~lk~ 234 (305)
T 2efl_A 186 QMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGE 234 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788999999999986 4444444444444444445555554443
No 19
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=50.83 E-value=16 Score=30.84 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq 115 (192)
+||++++.-+.. |.=..|++|++.||-.-.++|+..|++|=.+=|.|---|.
T Consensus 217 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~Ge 268 (279)
T 3pkr_A 217 DLTDKFLNNMSS-----RAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGV 268 (279)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 678999887752 4445689999999998899999999999887777654443
No 20
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=50.46 E-value=18 Score=29.22 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
+||++++.-+. .|.=+.|++|+|.+|---.+||...||.|=.+=|+|
T Consensus 160 e~~e~il~nmS-----~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L 206 (216)
T 4fhr_B 160 ELKEKIFKNMS-----KRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRL 206 (216)
T ss_dssp HHHHHHHTTSC-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 57888877764 234457899999999777799999999996665555
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.20 E-value=60 Score=25.91 Aligned_cols=11 Identities=9% Similarity=0.008 Sum_probs=7.4
Q ss_pred Hhhhhhhhcch
Q 029490 147 EVSVKYFSCSD 157 (192)
Q Consensus 147 ELv~ESErlRm 157 (192)
+|++.++|+|-
T Consensus 176 ~lL~~Yerir~ 186 (256)
T 3na7_A 176 KIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46677777764
No 22
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=50.08 E-value=33 Score=23.47 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=38.5
Q ss_pred HHHHhccchhHHHHHHHHHHhhhhhhccccchhh--HhhhHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 029490 83 EELEALADPMRKEVAVVRKKIDSVNKELKPLGHT--CQKKEREYKEALEAFNEKNKEKVQLITKLM 146 (192)
Q Consensus 83 eELE~laDPmRKEV~~VRKkID~vNreLKPLgqs--CqKKEkEYKEaLEAfNEKnkEKa~LVtkLm 146 (192)
++|...++-++.-...|+-.++.++..+.||..+ -+- +|-++|...-.+=.+=+..|.
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G------~A~~ay~~~~~~W~~~a~~l~ 73 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAG------AAAAAYSQAHKEWMDAARELV 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec------hHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888899999999999877 433 345555544433333333333
No 23
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=46.74 E-value=14 Score=27.90 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHH
Q 029490 94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLE 129 (192)
+||+.+++.|+++|+-..-|.+--.+|=.||.+|.-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999988887666666666666666666643
No 24
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.15 E-value=42 Score=24.51 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhHHHhhhHHHHHHHHH----------hccchhH--HHHHHHHHHhhhhhhccc
Q 029490 61 REKVQAHLGRVEEETKRLATIREELE----------ALADPMR--KEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 61 RekVqaqLGRvEeetkRLa~IreELE----------~laDPmR--KEV~~VRKkID~vNreLK 111 (192)
|.++++.|.+++.+-.+-..=|+-|+ .||||+- .+++.+.++||.+.-++.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777776 4688875 556777888888776663
No 25
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=45.13 E-value=98 Score=23.43 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh---hHHHhhhHH---HHHHHHHhccchhHHHHHH-HHHHhhh----hhhccccchh
Q 029490 47 RAKEEEIEKKKLEVREKVQAHLGR---VEEETKRLA---TIREELEALADPMRKEVAV-VRKKIDS----VNKELKPLGH 115 (192)
Q Consensus 47 ~AKEEEIErkKmEVRekVqaqLGR---vEeetkRLa---~IreELE~laDPmRKEV~~-VRKkID~----vNreLKPLgq 115 (192)
...|++|.+...++.+.+..-|.+ +....+++. .|-..||.+||=... ++. +++..+. .-.+|..++.
T Consensus 46 ~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~~~~~~~l~~m~~ 124 (235)
T 1sum_B 46 IADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHD-IAKNVLELMEEPPLKPLEDIPAMAN 124 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCCCSCCSHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHH
Confidence 456777888888888887654433 445555543 445699999999886 544 4443332 2233445555
Q ss_pred hHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 029490 116 TCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSV 150 (192)
Q Consensus 116 sCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ 150 (192)
.| ..-++.|++||...+.++|.-|-..-+-|.
T Consensus 125 ~v---~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD 156 (235)
T 1sum_B 125 QT---SEMLKFALRMFADVNVEKSFEVCRMDSKVD 156 (235)
T ss_dssp HH---HHHHHHHHHHHHSCCHHHHTHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55 457899999999999888866665544443
No 26
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=44.67 E-value=9.3 Score=34.18 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=27.6
Q ss_pred hHHHhhhHHHHHHHHH------hccchhHHHHHHHHHHhhhhhhccc--cchhhH
Q 029490 71 VEEETKRLATIREELE------ALADPMRKEVAVVRKKIDSVNKELK--PLGHTC 117 (192)
Q Consensus 71 vEeetkRLa~IreELE------~laDPmRKEV~~VRKkID~vNreLK--PLgqsC 117 (192)
.++-...+.+.|.||- .+.--+|+.+..++++|+.+|+.|+ |.|+..
T Consensus 232 ~q~~~~~~~~~r~~~~~~~~~~~~~~~Lr~~i~~~~~~i~~LN~~L~~~~Fg~~~ 286 (483)
T 3euj_A 232 FQDMEAALRENSGGSGGSISAESVANILRKTIQREQNRILQLNQGLQNIAFGQVK 286 (483)
T ss_dssp HHC-----------------CHHHHHHHHHHHHHHHHHHHHHGGGGSSCCBTTEE
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3444467777788875 5667899999999999999999998 666644
No 27
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=44.59 E-value=96 Score=23.18 Aligned_cols=91 Identities=11% Similarity=0.271 Sum_probs=53.6
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhh---------
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNE--------- 133 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNE--------- 133 (192)
.|+..|..+..-..+|....+.+ |+.|- ....++.+||.+..+++-++..|..+=+..+...+..-.
T Consensus 47 ~I~~~i~~i~~~v~~l~~~~~~~--L~~~~--~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~R 122 (180)
T 1s94_A 47 EIRAMIDKISDNVDAVKKKHSDI--LSAPQ--TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLR 122 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHH
Confidence 34445555555556666665553 33332 244688899999999999999998887776655443311
Q ss_pred -hhhHHHHHHHHHHHhhhhhhhcch
Q 029490 134 -KNKEKVQLITKLMEVSVKYFSCSD 157 (192)
Q Consensus 134 -KnkEKa~LVtkLmELv~ESErlRm 157 (192)
+..-...|..+|.++..+.-..+.
T Consensus 123 ir~~q~~~L~~kf~~~m~~yq~~q~ 147 (180)
T 1s94_A 123 IRKTQYSTISRKFVEVMSDYNTTQI 147 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345677888888877655443
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.21 E-value=75 Score=21.56 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=43.5
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHhccch---------------hHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHH
Q 029490 63 KVQAHLGRVEEETKRLATIREELEALADP---------------MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEA 127 (192)
Q Consensus 63 kVqaqLGRvEeetkRLa~IreELE~laDP---------------mRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEa 127 (192)
.+..++..++.+-+.+...-+||+.+.|. .-.=+..|-++++.+..+++-|-..+...++++++.
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888999988652 122235566777777777766666666666555544
No 29
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=42.65 E-value=25 Score=30.13 Aligned_cols=48 Identities=13% Similarity=0.372 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccc
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELK 111 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLK 111 (192)
++|++++.-+.. |.=..|++|++.||-.-.++|+..|++|=.+=|.|-
T Consensus 273 elrekil~nmS~-----Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~ 320 (329)
T 3hjl_A 273 DIKQKFLSNMSK-----RAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMI 320 (329)
T ss_dssp HHHHHHHTTSCH-----HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578999887752 344568999999999889999999999987766654
No 30
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=42.44 E-value=81 Score=25.65 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHh
Q 029490 77 RLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (192)
Q Consensus 77 RLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAf 131 (192)
.+..+=++|-..+.|. ...|+.|++.++..-.-|.+.|...+.-+++|++++
T Consensus 66 ~v~~~g~~L~~~~hp~---~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 117 (283)
T 3pe0_A 66 ELQNAGDRLLREDHPA---RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYF 117 (283)
T ss_dssp HHHHHHHHHHHSCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666667776 456889999999999999999999999999988764
No 31
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=39.44 E-value=94 Score=21.56 Aligned_cols=87 Identities=14% Similarity=0.308 Sum_probs=53.8
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhh---h---hH
Q 029490 64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK---N---KE 137 (192)
Q Consensus 64 VqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEK---n---kE 137 (192)
|+..|..+..-..+|...-+.+ |+.|.. ...++..+|.+..+++-++..|..+=+..+...+..-.+ + +-
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~--L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri 92 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAI--LASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRI 92 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Confidence 3444555555555666666654 555553 446889999999999999999988877666554432111 0 11
Q ss_pred H----HHHHHHHHHhhhhhhh
Q 029490 138 K----VQLITKLMEVSVKYFS 154 (192)
Q Consensus 138 K----a~LVtkLmELv~ESEr 154 (192)
+ ..|-.+|.++..+.-.
T Consensus 93 r~~q~~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 93 RKTQHSTLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 1 3466677787776643
No 32
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=39.31 E-value=1.1e+02 Score=22.53 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh---hHHHhhhH---HHHHHHHHhccchhHHHHHHHHHHhhh----hhhccccchhhH
Q 029490 48 AKEEEIEKKKLEVREKVQAHLGR---VEEETKRL---ATIREELEALADPMRKEVAVVRKKIDS----VNKELKPLGHTC 117 (192)
Q Consensus 48 AKEEEIErkKmEVRekVqaqLGR---vEeetkRL---a~IreELE~laDPmRKEV~~VRKkID~----vNreLKPLgqsC 117 (192)
..+++|.+...++.+.+..-+.+ +....+.+ -.|-..||.+||=...=...+.+..+. .-.+|..++..|
T Consensus 47 ~~d~~iD~l~~~i~~~~~~~l~~~~p~~~d~~~~~~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~~~~l~~m~~~v 126 (217)
T 1xwm_A 47 DGDGSIDALEEEVNDFALWLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKACIRIGGQPFVMDIGPLVLMYRLA 126 (217)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Confidence 45667777777888776654433 33334443 345579999999988633344433322 012344444444
Q ss_pred hhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 118 QKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 118 qKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
..-++.|++||...+.+.|.-|...-+-|
T Consensus 127 ---~~~l~~a~~a~~~~d~~~A~~v~~~d~~i 155 (217)
T 1xwm_A 127 ---TDMVSTAIAAYDREDASLAAQIADMDHRV 155 (217)
T ss_dssp ---HHHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45789999999999998887666554433
No 33
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=39.29 E-value=1.4e+02 Score=23.52 Aligned_cols=57 Identities=12% Similarity=0.292 Sum_probs=35.3
Q ss_pred hhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh---hhhhhhcchhhHHH
Q 029490 103 IDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV---SVKYFSCSDRKMQE 162 (192)
Q Consensus 103 ID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL---v~ESErlRmkKLEE 162 (192)
++.+...+.=+.+.|++-..+|..++.++|.-.. +..+.+..+ +-.=|..|+..|-+
T Consensus 194 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~---~~~~~~~~~~~~~Q~lee~Rl~~lk~ 253 (312)
T 3abh_A 194 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP---QYMENMEQVFEQCQQFEEKRLRFFRE 253 (312)
T ss_dssp HHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666778889999999999998643 344444443 33445555555533
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.95 E-value=41 Score=29.16 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=41.3
Q ss_pred HHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 029490 97 AVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 97 ~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL 148 (192)
+.+.=+|..+.+++..|.+....-+.++++.-+-|.+.......|-+.+.||
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566666777777777777888888888888888888899999999987
No 35
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=37.05 E-value=12 Score=25.74 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhhhhccccchh---hHhhhHHHHHHHHH-HhhhhhhHHHHHHHHHHHh
Q 029490 95 EVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEaLE-AfNEKnkEKa~LVtkLmEL 148 (192)
+++.+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+. ++.++.++
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~-vl~~~~~~ 60 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEE-MLAYLTAE 60 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHH-HHHHHHHH
Confidence 478899999999999876543 46666667776542 2223455554 34444443
No 36
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=35.80 E-value=16 Score=26.83 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=36.2
Q ss_pred ccch-hHHHHHHHHHHhhhhhhccccchh---hHhhhHHHHHHHHH-HhhhhhhHHHHHHHHHHHh
Q 029490 88 LADP-MRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 88 laDP-mRKEV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEaLE-AfNEKnkEKa~LVtkLmEL 148 (192)
|.|| +-.++..+|..||.++++|--|=. .|.++=-+||.+.. ..-...+|+.. +.++.++
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~v-l~~~~~~ 69 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQ-IKRLRKL 69 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHH-HHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHH-HHHHHHH
Confidence 3444 445689999999999999876642 45666667776432 22234455433 3444444
No 37
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=33.99 E-value=2.4e+02 Score=25.18 Aligned_cols=89 Identities=20% Similarity=0.302 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHH--------HHHHHHHHh-hh-hhhHHH-HHHHH
Q 029490 76 KRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKER--------EYKEALEAF-NE-KNKEKV-QLITK 144 (192)
Q Consensus 76 kRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEk--------EYKEaLEAf-NE-KnkEKa-~LVtk 144 (192)
.|-..|.+.|..--|-..+|| ++|..-|.+|||....-|.|-. +--.---|| |. ++++=| .|-++
T Consensus 117 ~rYn~I~~sLK~a~~eF~keV----~~I~~kn~DLK~f~~~~e~ka~~elndL~nei~~Lg~tf~~~~~~~~~a~eL~aK 192 (329)
T 2a1d_D 117 REYNELTESLKSAVKDFEKDV----EKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAK 192 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHTSGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcChhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788888888888888888 4678889999999877655532 111222355 33 344444 77788
Q ss_pred HHHhhhhh--------hhcchhhHHHHHHHHh
Q 029490 145 LMEVSVKY--------FSCSDRKMQELHFLIL 168 (192)
Q Consensus 145 LmELv~ES--------ErlRmkKLEEL~kl~~ 168 (192)
|==+|+.+ +|++-.+++.|+-+|=
T Consensus 193 LDlIlG~~~~~~ritNeRi~ke~ieDLeSIID 224 (329)
T 2a1d_D 193 VDLVLGDEDKPHRISNERIEKEMIKDLESIIE 224 (329)
T ss_dssp HHHHHCCSSSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCccccchHHHHHHHHHHHHHHHH
Confidence 87788876 6888889999998883
No 38
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=33.87 E-value=1.8e+02 Score=23.06 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHhccchhHHHHH
Q 029490 75 TKRLATIREELEALADPMRKEVA 97 (192)
Q Consensus 75 tkRLa~IreELE~laDPmRKEV~ 97 (192)
+.+...|-+--+.|.||.++..=
T Consensus 90 ~~~f~~In~AY~vLsdp~~R~~Y 112 (207)
T 3bvo_A 90 EKHSTLVNDAYKTLLAPLSRGLY 112 (207)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH
Confidence 45567888888889998877543
No 39
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=32.36 E-value=28 Score=25.48 Aligned_cols=53 Identities=26% Similarity=0.419 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhhccc--------cch---hhHhhhHHHHHHHHH-HhhhhhhHHHHHHHHHHHh
Q 029490 95 EVAVVRKKIDSVNKELK--------PLG---HTCQKKEREYKEALE-AFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 95 EV~~VRKkID~vNreLK--------PLg---qsCqKKEkEYKEaLE-AfNEKnkEKa~LVtkLmEL 148 (192)
.++.+|++||.++++|- -|= ..|.+.=-+||.... ..+...+|+.. +.++..+
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~v-l~~~~~~ 68 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYI-YDRIRKL 68 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHH-HHHHHHH
Confidence 47889999999999987 443 257777778887654 45566677654 3444443
No 40
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=31.35 E-value=2e+02 Score=22.90 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHhh
Q 029490 93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQELHFLILG 169 (192)
Q Consensus 93 RKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEEL~kl~~~ 169 (192)
.+++.-++.|.+.. .+.|.+-..+|+.++.++|.-...=-..+..+++.+-+=|..|+..|-+.=....+
T Consensus 182 ~k~~eK~~~k~~k~-------~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~ 251 (337)
T 2x3v_A 182 PEQQKKLVDKVDKC-------RQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKR 251 (337)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665544 34577888999999999998855444444445555545555566665443333333
No 41
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.54 E-value=67 Score=23.17 Aligned_cols=58 Identities=31% Similarity=0.479 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhHHHhhhHHHHHHHH-------HhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHH
Q 029490 60 VREKVQAHLGRVEEETKRLATIREEL-------EALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (192)
Q Consensus 60 VRekVqaqLGRvEeetkRLa~IreEL-------E~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaL 128 (192)
+|.+++..+|..--|-.-|..+.+|| +.|-.-+-.|.+.+.|-|+ +|+.|+.|...||
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~-----------~lk~K~~EL~~~l 76 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE-----------LLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHh
Confidence 45556666666666667777777775 4566667777777777775 4566776666554
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.46 E-value=1.2e+02 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.413 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhh
Q 029490 91 PMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNK 136 (192)
Q Consensus 91 PmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnk 136 (192)
|++++.+.+|-+|+.+-.+++- .+.||+...+.+.+...
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~-------~~~e~~~L~~~l~eE~~ 40 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSD-------RDDEVKRLREDIAKENE 40 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHH
Confidence 5566666666666555544443 34444444444444433
No 43
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=30.10 E-value=36 Score=24.70 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=36.0
Q ss_pred hhhHHHHH----HHHHhccchhHHHHHHHHHHh----hhhhhccccchhhHhhhHHHHHHHHHHh
Q 029490 75 TKRLATIR----EELEALADPMRKEVAVVRKKI----DSVNKELKPLGHTCQKKEREYKEALEAF 131 (192)
Q Consensus 75 tkRLa~Ir----eELE~laDPmRKEV~~VRKkI----D~vNreLKPLgqsCqKKEkEYKEaLEAf 131 (192)
|+-+..|| ++...+++-++..+..+-.-. +.+-..+.++|++|. -|++.|
T Consensus 68 s~A~p~IW~~~~~~F~~~~~~~~~aa~~l~~aA~~gd~~~~~a~~~v~~~Ck-------aCH~~y 125 (128)
T 2ccy_A 68 GETKPEAFGSKSAEFLEGWKALATESTKLAAAAKAGPDALKAQAAATGKVCK-------ACHEEF 125 (128)
T ss_dssp CCBCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhHHH-------HHHHHH
Confidence 56778888 677777888888877666533 455667888999994 566655
No 44
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=29.70 E-value=2.6e+02 Score=23.69 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH-------HhhhhHHHhhhHHHHHHHHH--hccchhHHHH---HHHHHHhhhhhhccccch
Q 029490 47 RAKEEEIEKKKLEVREKVQA-------HLGRVEEETKRLATIREELE--ALADPMRKEV---AVVRKKIDSVNKELKPLG 114 (192)
Q Consensus 47 ~AKEEEIErkKmEVRekVqa-------qLGRvEeetkRLa~IreELE--~laDPmRKEV---~~VRKkID~vNreLKPLg 114 (192)
.+.-.++||...++++-... -..-++..--+..+.-+|++ -.+||--.+- ..-.|..|...+.=--+-
T Consensus 104 ~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~ 183 (279)
T 3qwe_A 104 AAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQ 183 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHH
Confidence 45667899999998885443 33334444455667778888 4577632211 112344555444323334
Q ss_pred hhHhhhHHHHHHHHHHhhhhh----hHHHHHHHHHHHhhhhhh
Q 029490 115 HTCQKKEREYKEALEAFNEKN----KEKVQLITKLMEVSVKYF 153 (192)
Q Consensus 115 qsCqKKEkEYKEaLEAfNEKn----kEKa~LVtkLmELv~ESE 153 (192)
.-++.-+-.|+-+...+|..- +.|.+.|+.|-+||.|..
T Consensus 184 ~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D 226 (279)
T 3qwe_A 184 AKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD 226 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455666677887777766432 235566666666665543
No 45
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=29.61 E-value=1.8e+02 Score=22.00 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhH
Q 029490 119 KKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKM 160 (192)
Q Consensus 119 KKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKL 160 (192)
|-..+|+.++.+||.-...=...+..+++.+-+-|..|+..|
T Consensus 174 ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~l 215 (276)
T 2v0o_A 174 KATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHI 215 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446799999999996654322223333333333344455444
No 46
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=29.31 E-value=15 Score=25.86 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhhhhhhccccchh---hHhhhHHHHHHHHH-HhhhhhhHHHHHHHHHHHh
Q 029490 91 PMRKEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 91 PmRKEV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEaLE-AfNEKnkEKa~LVtkLmEL 148 (192)
|.-.++..+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+. ++.++.++
T Consensus 9 ~~~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~-vl~~~~~~ 69 (90)
T 2vkl_A 9 QPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMK-VIERYSEL 69 (90)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHH-HHHHHHTT
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHH-HHHHHHHH
Confidence 4444689999999999999876643 35556666775531 2223445543 34444444
No 47
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.27 E-value=1.1e+02 Score=19.28 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=35.3
Q ss_pred ccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhc
Q 029490 111 KPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSC 155 (192)
Q Consensus 111 KPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErl 155 (192)
+|+-..-+..+.-+.++-+-|+.+..+.-.+.+.|..++..=+..
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~ 45 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTI 45 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888888888888888888888888777654433
No 48
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=29.25 E-value=1.9e+02 Score=21.99 Aligned_cols=78 Identities=22% Similarity=0.458 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhhHHH-hhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHH----HHHHHHHh
Q 029490 57 KLEVREKVQAHLGRVEEE-TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKERE----YKEALEAF 131 (192)
Q Consensus 57 KmEVRekVqaqLGRvEee-tkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkE----YKEaLEAf 131 (192)
--++|.++.-.++.+-.- .+.+..+|+.|+-+++-+|. .|++.++.+...|.|++..-+.+=.+ .|..|.-|
T Consensus 91 lee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~---~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py 167 (185)
T 3r2p_A 91 LEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE---GARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPY 167 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345666666666554322 34567777777766666665 57789999999999999877655443 33444444
Q ss_pred hhhhhH
Q 029490 132 NEKNKE 137 (192)
Q Consensus 132 NEKnkE 137 (192)
=+.=+.
T Consensus 168 ~ee~k~ 173 (185)
T 3r2p_A 168 SDELRQ 173 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 49
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=28.90 E-value=31 Score=20.74 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHHH
Q 029490 45 TFRAKEEEIEKKKLE 59 (192)
Q Consensus 45 ~F~AKEEEIErkKmE 59 (192)
+=++++||++|+||-
T Consensus 3 aqKekeEe~kr~k~~ 17 (26)
T 1jzp_A 3 AQKAKAEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889999999864
No 50
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=28.36 E-value=1.2e+02 Score=19.49 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=21.6
Q ss_pred HHHHhccchhHHHHHHHHHHhhhhhhccccchh
Q 029490 83 EELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (192)
Q Consensus 83 eELE~laDPmRKEV~~VRKkID~vNreLKPLgq 115 (192)
++|+..|.-++.-...|+-.++.++..+.+|+.
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~ 44 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666677777777777743
No 51
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.74 E-value=1.1e+02 Score=22.40 Aligned_cols=38 Identities=26% Similarity=0.131 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 029490 119 KKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCS 156 (192)
Q Consensus 119 KKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlR 156 (192)
.=-+||.+-|++-|.-|--|-.||.++=||.+|-+-++
T Consensus 13 nLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~ 50 (77)
T 2w83_C 13 NLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQ 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34578999999999999999999999999999987665
No 52
>1nu7_D Staphylocoagulase; thrombin non-proteolytic activator, hydrolase-hydrolase INHI complex, protein binding; HET: 0ZJ; 2.20A {Staphylococcus aureus} SCOP: a.8.6.1 a.8.6.1 PDB: 1nu9_C*
Probab=26.75 E-value=3.2e+02 Score=23.87 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHH--------HHHHHHHHh-hhh-hhHHH-HHHHH
Q 029490 76 KRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKER--------EYKEALEAF-NEK-NKEKV-QLITK 144 (192)
Q Consensus 76 kRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEk--------EYKEaLEAf-NEK-nkEKa-~LVtk 144 (192)
.|-..|-+.|..--+-..+||. +|..-|.+|||....-|.|-. +--.---|| |.+ +++=| .|-++
T Consensus 117 ~~Yn~I~~sLK~a~~eF~keV~----~I~~kn~dLk~f~~~~e~ka~~e~~dL~nki~~lg~tf~~~~~~~~~a~eL~~K 192 (282)
T 1nu7_D 117 REYNELTESLKSAVKDFEKDVE----IIENQHHDLKPFTDEMEEKATARVDDLANKAYSVYFAFVRDTQHKTEALELKAK 192 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHCGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhcChhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHH
Confidence 4566788888887888888884 677889999999877665432 111122355 442 33333 67778
Q ss_pred HHHhhhhh--------hhcchhhHHHHHHHHh
Q 029490 145 LMEVSVKY--------FSCSDRKMQELHFLIL 168 (192)
Q Consensus 145 LmELv~ES--------ErlRmkKLEEL~kl~~ 168 (192)
|==+|+.+ +|++-.+++.|+-+|=
T Consensus 193 LDlIlG~~~~~~ritNeRi~ke~ieDLesIID 224 (282)
T 1nu7_D 193 VDLVLGDEDKPHRISNERIEKEMIKDLESIIE 224 (282)
T ss_dssp HHHHHCCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence 77778876 6888889999998873
No 53
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=26.35 E-value=1.6e+02 Score=23.03 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHH---hhhHHHHHHHHH
Q 029490 46 FRAKEEEIEKKKLEVREKVQAHLGRVEEE---TKRLATIREELE 86 (192)
Q Consensus 46 F~AKEEEIErkKmEVRekVqaqLGRvEee---tkRLa~IreELE 86 (192)
+=.+|-|+-+-+.+++.+|+.++..--.| -..|..|++||-
T Consensus 206 lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 206 MMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567777777888899999888877666 345777777774
No 54
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=25.64 E-value=2.4e+02 Score=21.93 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=38.1
Q ss_pred ccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 109 ELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 109 eLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
.+.-.-+.+++-+.+|..++.++|.-..+=.+-+..+++-+-+=|..|+..|-+
T Consensus 178 k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~ 231 (290)
T 3i2w_A 178 RVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKE 231 (290)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567888899999999999886654445555555566667777777766
No 55
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=25.41 E-value=2.3e+02 Score=21.80 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=45.2
Q ss_pred hhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhH
Q 029490 68 LGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKE 137 (192)
Q Consensus 68 LGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkE 137 (192)
+.-|+...+.++.++.++..+..-|-.|++.|..+.... ++||-. .=..+..+|.+|=+-|+.
T Consensus 15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~---~~~l~~----~i~~l~~~l~~y~e~~r~ 77 (171)
T 2p2u_A 15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQK---SAPLLA----RRKELEDGVATFATLNKT 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHhHH
Confidence 445778889999999999999999999999888876643 445433 334455666677666643
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.40 E-value=1.5e+02 Score=24.83 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHH
Q 029490 47 RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIRE 83 (192)
Q Consensus 47 ~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~Ire 83 (192)
++.....++++.+....|..+-.--.++-.++.....
T Consensus 359 ~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~ 395 (487)
T 3oja_A 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhc
Confidence 3333445555555544444443333344444444433
No 57
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.33 E-value=36 Score=25.50 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhhhhhcc
Q 029490 92 MRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 92 mRKEV~~VRKkID~vNreL 110 (192)
++-+|..+|++||.+++|-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~ 28 (100)
T 1go4_E 10 SREEADTLRLKVEELEGER 28 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5667777777777776663
No 58
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=25.24 E-value=92 Score=22.87 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhhccccchhhHhhhHHHHHHHH
Q 029490 95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128 (192)
Q Consensus 95 EV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaL 128 (192)
....|+.|++.+|..-.-|...|..+-....+||
T Consensus 128 ~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eAl 161 (161)
T 3lbx_A 128 AHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161 (161)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3577888888888888888888887777666654
No 59
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=24.45 E-value=26 Score=24.87 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhhhccccchh---hHhhhHHHHHHHHH-HhhhhhhHHHHH
Q 029490 94 KEVAVVRKKIDSVNKELKPLGH---TCQKKEREYKEALE-AFNEKNKEKVQL 141 (192)
Q Consensus 94 KEV~~VRKkID~vNreLKPLgq---sCqKKEkEYKEaLE-AfNEKnkEKa~L 141 (192)
.++..+|+.||.++++|--|=. .|.++=-+||.+.. ..-...+|+..|
T Consensus 17 ~~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl 68 (91)
T 1ybz_A 17 TTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHH
Confidence 3588999999999999876643 46666667776432 222455666544
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.44 E-value=2.7e+02 Score=22.11 Aligned_cols=78 Identities=13% Similarity=0.269 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHhccch-----hHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 029490 75 TKRLATIREELEALADP-----MRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVS 149 (192)
Q Consensus 75 tkRLa~IreELE~laDP-----mRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv 149 (192)
..|++..+.-|..-.+| +-+|+....++|...+.++..+......++.++.++-+.+.+...+=..+...+-+.+
T Consensus 73 ~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 152 (256)
T 3na7_A 73 NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444443 5678888888888888888888888888887777776666666555544444444444
Q ss_pred hhh
Q 029490 150 VKY 152 (192)
Q Consensus 150 ~ES 152 (192)
.+-
T Consensus 153 ~e~ 155 (256)
T 3na7_A 153 KNI 155 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 61
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.86 E-value=1e+02 Score=20.49 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhc
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEAL 88 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~l 88 (192)
++++-+..|+..++++-.+|..++..|+.+
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888777777653
No 62
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=23.59 E-value=1.9e+02 Score=20.09 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhh---hhhHHHHHHHHHHHhhhh
Q 029490 119 KKEREYKEALEAFNE---KNKEKVQLITKLMEVSVK 151 (192)
Q Consensus 119 KKEkEYKEaLEAfNE---KnkEKa~LVtkLmELv~E 151 (192)
.|+..++++.++|+. -..||.+|.+...+||.-
T Consensus 59 ~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdk 94 (104)
T 4afl_A 59 EKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDK 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666654 467999999999999964
No 63
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=23.41 E-value=1.1e+02 Score=24.82 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=33.2
Q ss_pred cchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhcchhhHHH
Q 029490 112 PLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEVSVKYFSCSDRKMQE 162 (192)
Q Consensus 112 PLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmELv~ESErlRmkKLEE 162 (192)
-..+.+.+-+.+|..++..||.-...=-+-+..+.+-+-+=|..|+..|-+
T Consensus 194 k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~ 244 (320)
T 3m3w_A 194 RCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKD 244 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777899999999999865433333444555555566667776643
No 64
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.39 E-value=2.1e+02 Score=20.50 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHH
Q 029490 96 VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEA 130 (192)
Q Consensus 96 V~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEA 130 (192)
...|+.+++.+|..-.-|...|..+.....+|+.+
T Consensus 74 ~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~~ 108 (213)
T 1cun_A 74 KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEY 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999998654
No 65
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=23.29 E-value=2.9e+02 Score=22.19 Aligned_cols=31 Identities=32% Similarity=0.559 Sum_probs=25.3
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhhhcc
Q 029490 80 TIREELEALADPMRKEVAVVRKKIDSVNKEL 110 (192)
Q Consensus 80 ~IreELE~laDPmRKEV~~VRKkID~vNreL 110 (192)
.++++|+.+..-..+-...|+++|..+.+.+
T Consensus 70 ~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~ 100 (267)
T 1dn1_B 70 KTKEELEELMSDIKKTANKVRSKLKSIEQSI 100 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888887764
No 66
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.04 E-value=1.1e+02 Score=26.71 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 029490 90 DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMEV 148 (192)
Q Consensus 90 DPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAfNEKnkEKa~LVtkLmEL 148 (192)
|-++.|+..+|+++..+.++++ .-..++++.-+.+.+.+.+...|-+.+++|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~-------~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNE-------QQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666555443 335566777777888889999999999998
No 67
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=22.38 E-value=1.7e+02 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHhccchhHHHHHHHHHHhhhhhhccccchhhHhhhHHHHHHHHHHh
Q 029490 84 ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAF 131 (192)
Q Consensus 84 ELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqKKEkEYKEaLEAf 131 (192)
.|-.-+.|... .|+.+++.+|..-.-|-+-|...+.-+++|++++
T Consensus 158 ~Li~~~Hpas~---~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~ 202 (450)
T 3r6n_A 158 QLVLNQHPASD---KIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF 202 (450)
T ss_dssp HHHHTTCTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667654 4778999999999999999999999999998875
No 68
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=1e+02 Score=20.63 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHH
Q 029490 50 EEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95 (192)
Q Consensus 50 EEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKE 95 (192)
.++|.+.=...--+.|--.+.-.+...+...|.+--+.|.||.++.
T Consensus 21 ~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 66 (88)
T 2ctr_A 21 ERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3455444333333333223333556778889999999999997643
No 69
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.36 E-value=2.4e+02 Score=20.54 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchh
Q 029490 53 IEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGH 115 (192)
Q Consensus 53 IErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgq 115 (192)
|-.+.-..+.++-||--| +||+.++ .+||.--.-+..|+..++.-...+.+|+.-+.+
T Consensus 26 lKq~RRtlKNRgyAq~CR----~Kr~~q~-~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 26 LKQKRRTLKNRGYAQSCR----YKRVQQK-HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677788888776 5788766 677755555555666666665555555443333
No 70
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.28 E-value=1.3e+02 Score=24.58 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhh
Q 029490 59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (192)
Q Consensus 59 EVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqK 119 (192)
+....+...+.+.|+-.-++.++.+|+.. +..++..++..++..+-++-|..+.|..
T Consensus 138 ~~~~~~~e~~~~~e~~~~~i~ql~~En~~----le~~Ie~Lk~e~~e~~te~~p~~k~~~q 194 (250)
T 2ve7_C 138 ACRETYMEFLWQYKSSADKMQQLNAAHQE----ALMKLERLEKEVDEDTTVTIPSAVYVAQ 194 (250)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH----HHHSCC-------------CTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 33444566667788888888888888666 4566666777777777777777666643
No 71
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=20.90 E-value=2.8e+02 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=16.9
Q ss_pred HhhhHHHHHHHHHhccchhHHHH
Q 029490 74 ETKRLATIREELEALADPMRKEV 96 (192)
Q Consensus 74 etkRLa~IreELE~laDPmRKEV 96 (192)
.+.+...|-+--+.|+||.++-.
T Consensus 47 a~~~f~~In~AY~vL~dp~~R~~ 69 (171)
T 1fpo_A 47 AVQQSATINQAWQTLRHPLMRAE 69 (171)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchHHHH
Confidence 34567788888888888887643
No 72
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.25 E-value=3.5e+02 Score=22.00 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=40.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhhccccchhhHhh
Q 029490 40 RSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQK 119 (192)
Q Consensus 40 rsAls~F~AKEEEIErkKmEVRekVqaqLGRvEeetkRLa~IreELE~laDPmRKEV~~VRKkID~vNreLKPLgqsCqK 119 (192)
+.-++.|+.++-+.|. +|..+.-+||.+.+.|+.-+++ +...||-.+.. ...+-+=+-=.+
T Consensus 77 ~~yI~llrErea~lEq-------kVaeq~e~Ve~e~q~Le~ar~e-----------l~qArke~eKf-elHrqiwqaE~k 137 (169)
T 3k29_A 77 KAYIKVVAIQLSEEEE-------KVNKQKENVLAASKELERAEVE-----------LTKRRKEEEKT-RLHKEEWMKEAL 137 (169)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445556655555443 3555666666776666665444 44455544444 333334445567
Q ss_pred hHHHHHHHHH
Q 029490 120 KEREYKEALE 129 (192)
Q Consensus 120 KEkEYKEaLE 129 (192)
++.||.|-+|
T Consensus 138 re~E~qEElE 147 (169)
T 3k29_A 138 KEEARQEEKE 147 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888776
No 73
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.02 E-value=43 Score=22.59 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHhh
Q 029490 91 PMRKEVAVVRKKID 104 (192)
Q Consensus 91 PmRKEV~~VRKkID 104 (192)
-.-||++-+||||+
T Consensus 35 ylekeianlrkkie 48 (49)
T 3he5_A 35 YLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 35689999999996
Done!