BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029491
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1
SV=1
Length = 469
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
++ GI +F L+E AE+ AK+ L IN D WS H + H+ + K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ W S + HN+WH AL YL L IYD HI L+ DA+ V ++
Sbjct: 241 ETFWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAMLDVV--DSC 296
Query: 143 GLLLRVYVRG 152
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
>sp|Q5RFF7|TTC38_PONAB Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2
SV=1
Length = 469
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
++ GI +F L+E AE+ AK+ L IN D WS H + H+ + K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ W S + HN+WH AL YL L IYD HI L+ A+ V ++
Sbjct: 241 ETLWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAMLDVV--DSC 296
Query: 143 GLLLRVYVRG 152
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
>sp|A2VD82|TTC38_XENLA Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2
SV=1
Length = 469
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G D + +VLPY + E ++ G+ +F LLE A + AK+ L + + D
Sbjct: 154 LGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDS 213
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
WS H + HV + + FM+E + W S + H +WH AL YL L
Sbjct: 214 WSVHTIAHVHEMKADLDSGLSFMQETENNWKG-SDMLACHVYWHWAL-YLIEKGDYEAAL 271
Query: 117 EIYDNHI 123
+YDNHI
Sbjct: 272 TLYDNHI 278
>sp|A3KMP2|TTC38_MOUSE Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2
SV=2
Length = 465
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74
+P N ++ GI +F L+E A++ AK+ L I D WS H + HV + K+
Sbjct: 172 IPLN---SYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKD 228
Query: 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELE 128
++FM++ W S + HN+WH AL YL L IYD+HI L+
Sbjct: 229 GLEFMQQSEGHWKD-SDMLACHNYWHWAL-YLIEKGDYEAALTIYDSHILPSLQ 280
>sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38
PE=2 SV=1
Length = 469
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 1 MGRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G D + +VLPY ++ G+ +F LLE A + AK+ L +++ D
Sbjct: 154 LGEQRQMRDSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDS 213
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
WS H + HV + + FM+E + W S + H +WH AL ++E L
Sbjct: 214 WSVHTVAHVHEMRADLDSGLAFMQETENNWKG-SDMLACHVYWHWALYFIE-KGDYEAAL 271
Query: 117 EIYDNHI 123
+YDNHI
Sbjct: 272 TLYDNHI 278
>sp|A3KPN8|TTC38_DANRE Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3
SV=1
Length = 466
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Query: 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52
+G D + +V+P Y Q I G+ +F LLE +AE+ AK+ L +
Sbjct: 154 LGEQTQMRDSVARVMPHWKPHMPLYRQ----IKGMYSFGLLETRLYDEAEKMAKEALSLT 209
Query: 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112
D WS HA+ HV + ++ + FM W+ C + HN+WH AL ++E
Sbjct: 210 PEDGWSVHAVAHVHEMKAEVEKGLNFMASTEKNWTVC-DMLACHNYWHWALYHIE-KGNY 267
Query: 113 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRG 152
L+I+D + + K A+ V ++ LL R+ + G
Sbjct: 268 EAALKIFDEQVSQRCVKSGAMLDIV--DSCSLLYRLELEG 305
>sp|A1JSF2|MALT_YERE8 HTH-type transcriptional regulator MalT OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=malT PE=3
SV=1
Length = 903
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 5 DLCFDIIH-QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-------NKHDC 56
D FD+IH Q L +F+ I + L ++ +AEEAA+KG++I + C
Sbjct: 555 DKAFDLIHEQHLEQLPMHEFLLRIRSQVLWSWSRLDEAEEAARKGIEILVNYQPQQQLQC 614
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSS 84
+ A C + + D A +++ C +
Sbjct: 615 LAMLAKCSLARGD--LDNANMYIQRCEA 640
>sp|P21548|GBRG2_CHICK Gamma-aminobutyric acid receptor subunit gamma-2 OS=Gallus gallus
GN=GABRG2 PE=2 SV=1
Length = 474
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF------GNRLKV- 163
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F RLK
Sbjct: 69 LNGLLEGYDNKLRPDIGVKPTVIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 128
Query: 164 -------LADCVADQVSIPSIFF 179
L + ++ IP FF
Sbjct: 129 STIKVLRLNSNMVGKIWIPDTFF 151
>sp|Q5REA1|GBRG2_PONAB Gamma-aminobutyric acid receptor subunit gamma-2 OS=Pongo abelii
GN=GABRG2 PE=2 SV=1
Length = 467
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF------GNRLKV- 163
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F RLK
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 129
Query: 164 -------LADCVADQVSIPSIFF 179
L + ++ IP FF
Sbjct: 130 STIKVLRLNSNMVGKIWIPDTFF 152
>sp|P18507|GBRG2_HUMAN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Homo sapiens
GN=GABRG2 PE=1 SV=2
Length = 467
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF------GNRLKV- 163
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F RLK
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 129
Query: 164 -------LADCVADQVSIPSIFF 179
L + ++ IP FF
Sbjct: 130 STIKVLRLNSNMVGKIWIPDTFF 152
>sp|P22300|GBRG2_BOVIN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Bos taurus
GN=GABRG2 PE=2 SV=1
Length = 475
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF------GNRLKV- 163
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F RLK
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFGQTWYDRRLKFN 129
Query: 164 -------LADCVADQVSIPSIFF 179
L + ++ IP FF
Sbjct: 130 STIKVLRLNSNMVGKIWIPDTFF 152
>sp|P22723|GBRG2_MOUSE Gamma-aminobutyric acid receptor subunit gamma-2 OS=Mus musculus
GN=Gabrg2 PE=1 SV=3
Length = 474
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF------GNRLKV- 163
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F RLK
Sbjct: 69 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 128
Query: 164 -------LADCVADQVSIPSIFF 179
L + ++ IP FF
Sbjct: 129 STIKVLRLNSNMVGKIWIPDTFF 151
>sp|P18508|GBRG2_RAT Gamma-aminobutyric acid receptor subunit gamma-2 OS=Rattus
norvegicus GN=Gabrg2 PE=1 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF------GNRLKV- 163
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F RLK
Sbjct: 69 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 128
Query: 164 -------LADCVADQVSIPSIFF 179
L + ++ IP FF
Sbjct: 129 STIKVLRLNSNMVGKIWIPDTFF 151
>sp|P40134|CYAA_HAEIN Adenylate cyclase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=cyaA PE=3 SV=1
Length = 843
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 92 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVR 151
F Y + W + + EG + + L++ N I++ + +PD++ Y LR V
Sbjct: 602 FTYRNVWNEIRTLHFEGQNAILLALKVLSNKIYRGVNRPDSIQVYCYSERYRQDLRQLVM 661
Query: 152 G 152
G
Sbjct: 662 G 662
>sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 OS=Caenorhabditis elegans
GN=ifp-1 PE=3 SV=1
Length = 776
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 37 QMSDAEE----AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81
Q+ +AE+ AK L + K H +CH+ DC K +++ME+
Sbjct: 101 QVKEAEQLWRHTAKSALGVPKEVDDEFHRICHIKMEDCITKRRIKYMED 149
>sp|Q7TMF5|SPA12_MOUSE Serpin A12 OS=Mus musculus GN=Serpina12 PE=1 SV=2
Length = 413
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH 68
AFS+L LG + E ++G + W HA H L H
Sbjct: 82 AFSMLSLGAQNSTLEEIREGFNFKEMSNWDVHAAFHYLLH 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,114,555
Number of Sequences: 539616
Number of extensions: 2903573
Number of successful extensions: 7100
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7086
Number of HSP's gapped (non-prelim): 18
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)