Query 029491
Match_columns 192
No_of_seqs 199 out of 359
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2610 Uncharacterized conser 100.0 1.5E-32 3.4E-37 237.3 11.8 156 1-168 150-309 (491)
2 cd05804 StaR_like StaR_like; a 99.9 1.8E-21 3.8E-26 168.2 18.1 163 3-171 95-257 (355)
3 PRK15359 type III secretion sy 99.7 2.9E-15 6.3E-20 116.3 13.7 110 8-126 13-122 (144)
4 PRK12370 invasion protein regu 99.6 5.6E-14 1.2E-18 130.3 16.9 118 2-125 318-435 (553)
5 PRK10370 formate-dependent nit 99.6 1.5E-13 3.1E-18 112.3 15.7 119 2-126 53-174 (198)
6 PRK15179 Vi polysaccharide bio 99.6 1.1E-13 2.4E-18 131.5 16.3 159 1-167 99-261 (694)
7 PRK09782 bacteriophage N4 rece 99.5 7.3E-14 1.6E-18 137.1 14.7 119 1-126 589-707 (987)
8 KOG4626 O-linked N-acetylgluco 99.5 7.6E-14 1.6E-18 129.0 13.5 120 1-126 299-418 (966)
9 PRK15359 type III secretion sy 99.5 8.2E-14 1.8E-18 108.1 11.8 90 1-90 37-126 (144)
10 COG3063 PilF Tfp pilus assembl 99.5 2.7E-13 5.9E-18 112.7 13.5 121 2-126 49-169 (250)
11 KOG4626 O-linked N-acetylgluco 99.5 2E-13 4.3E-18 126.3 13.3 158 1-172 367-524 (966)
12 PRK12370 invasion protein regu 99.5 4E-13 8.6E-18 124.6 14.0 118 3-126 276-402 (553)
13 PRK11189 lipoprotein NlpI; Pro 99.5 1.5E-12 3.3E-17 111.9 14.9 118 1-125 77-194 (296)
14 TIGR02552 LcrH_SycD type III s 99.5 2.8E-12 6E-17 96.5 14.4 112 9-126 4-115 (135)
15 TIGR00990 3a0801s09 mitochondr 99.4 2E-12 4.3E-17 120.9 14.6 120 1-126 378-497 (615)
16 PRK15174 Vi polysaccharide exp 99.4 5.8E-12 1.3E-16 119.2 17.5 119 2-126 260-382 (656)
17 PRK11189 lipoprotein NlpI; Pro 99.4 4.4E-12 9.6E-17 109.1 14.5 119 2-126 40-162 (296)
18 PRK15174 Vi polysaccharide exp 99.4 6.9E-12 1.5E-16 118.7 16.6 120 1-126 225-348 (656)
19 TIGR00990 3a0801s09 mitochondr 99.4 9.5E-12 2.1E-16 116.4 16.9 120 1-126 344-463 (615)
20 TIGR02521 type_IV_pilW type IV 99.4 3E-11 6.5E-16 95.4 17.2 122 1-126 44-165 (234)
21 KOG1126 DNA-binding cell divis 99.4 1.5E-12 3.3E-17 120.6 9.2 138 2-150 435-572 (638)
22 PF13429 TPR_15: Tetratricopep 99.3 3.3E-11 7.1E-16 101.9 13.4 119 2-126 124-244 (280)
23 TIGR02521 type_IV_pilW type IV 99.3 2.1E-10 4.5E-15 90.6 17.0 119 1-125 78-198 (234)
24 PRK15179 Vi polysaccharide bio 99.3 4.7E-11 1E-15 113.8 15.4 114 7-126 71-184 (694)
25 PF13429 TPR_15: Tetratricopep 99.3 3E-12 6.5E-17 108.3 5.9 119 1-125 159-277 (280)
26 PRK09782 bacteriophage N4 rece 99.3 1.3E-10 2.8E-15 114.4 17.1 119 1-126 555-673 (987)
27 PRK11906 transcriptional regul 99.3 1E-10 2.2E-15 105.7 14.4 117 4-126 274-402 (458)
28 PLN03088 SGT1, suppressor of 99.3 7.8E-11 1.7E-15 104.1 12.7 95 2-99 16-110 (356)
29 KOG0553 TPR repeat-containing 99.3 3.6E-11 7.7E-16 103.2 9.9 103 2-109 95-197 (304)
30 PRK15363 pathogenicity island 99.2 1.3E-10 2.9E-15 91.8 12.3 102 19-126 32-133 (157)
31 TIGR02917 PEP_TPR_lipo putativ 99.2 1.4E-10 3E-15 108.4 14.4 118 1-125 749-866 (899)
32 TIGR02917 PEP_TPR_lipo putativ 99.2 4.2E-10 9.2E-15 105.1 16.8 118 1-126 716-833 (899)
33 PRK11447 cellulose synthase su 99.2 3.6E-10 7.7E-15 112.9 16.7 120 1-126 364-525 (1157)
34 PRK10370 formate-dependent nit 99.2 1.2E-10 2.6E-15 95.2 10.9 91 1-91 86-179 (198)
35 TIGR02552 LcrH_SycD type III s 99.2 1.5E-10 3.3E-15 86.9 10.0 90 1-90 30-119 (135)
36 PRK11906 transcriptional regul 99.2 4.6E-10 1E-14 101.5 13.3 117 3-125 319-436 (458)
37 PLN02789 farnesyltranstransfer 99.2 5.1E-10 1.1E-14 97.9 13.2 119 2-126 51-172 (320)
38 PRK11447 cellulose synthase su 99.2 4.4E-10 9.6E-15 112.3 14.5 120 1-126 282-415 (1157)
39 COG5010 TadD Flp pilus assembl 99.2 4.5E-10 9.8E-15 94.7 12.0 119 1-125 113-231 (257)
40 PF13414 TPR_11: TPR repeat; P 99.2 1.6E-10 3.5E-15 77.7 7.5 68 20-87 1-69 (69)
41 PRK11788 tetratricopeptide rep 99.2 3.8E-09 8.2E-14 92.2 18.0 117 2-125 194-311 (389)
42 PRK10049 pgaA outer membrane p 99.1 2.3E-09 5E-14 103.1 17.4 118 2-126 29-146 (765)
43 COG5010 TadD Flp pilus assembl 99.1 2.9E-09 6.2E-14 89.9 15.5 119 2-126 80-198 (257)
44 PF13432 TPR_16: Tetratricopep 99.1 2.3E-10 4.9E-15 76.3 6.7 63 27-89 2-64 (65)
45 TIGR03302 OM_YfiO outer membra 99.1 4.6E-09 9.9E-14 86.2 15.6 123 1-126 46-196 (235)
46 CHL00033 ycf3 photosystem I as 99.1 2.1E-09 4.6E-14 84.6 13.0 115 4-124 15-141 (168)
47 PRK10049 pgaA outer membrane p 99.1 1.2E-09 2.6E-14 105.1 13.7 117 1-124 62-178 (765)
48 KOG0553 TPR repeat-containing 99.1 1.2E-09 2.5E-14 93.9 11.9 153 24-188 83-236 (304)
49 TIGR03302 OM_YfiO outer membra 99.1 2.4E-09 5.2E-14 87.8 13.1 120 1-123 83-230 (235)
50 cd00189 TPR Tetratricopeptide 99.1 2.4E-09 5.3E-14 71.5 10.5 96 24-125 2-97 (100)
51 PLN03088 SGT1, suppressor of 99.1 3.1E-09 6.8E-14 93.9 13.2 94 27-126 7-100 (356)
52 COG3063 PilF Tfp pilus assembl 99.1 5.9E-09 1.3E-13 87.0 13.8 152 1-167 82-235 (250)
53 PRK11788 tetratricopeptide rep 99.0 6.8E-09 1.5E-13 90.6 14.4 119 2-125 155-278 (389)
54 cd00189 TPR Tetratricopeptide 99.0 3.2E-09 6.8E-14 70.9 9.2 87 1-87 13-99 (100)
55 PRK10153 DNA-binding transcrip 99.0 3.9E-09 8.4E-14 97.8 12.5 117 3-126 357-483 (517)
56 PRK15363 pathogenicity island 99.0 3.1E-09 6.7E-14 84.1 9.8 87 1-87 48-134 (157)
57 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.5E-09 1.4E-13 75.4 10.2 99 24-125 4-105 (119)
58 KOG1155 Anaphase-promoting com 99.0 5.9E-09 1.3E-13 94.2 11.7 119 2-126 344-462 (559)
59 PRK02603 photosystem I assembl 99.0 3.7E-08 8.1E-13 77.9 15.0 114 6-125 17-149 (172)
60 KOG0547 Translocase of outer m 99.0 6E-09 1.3E-13 94.7 11.6 137 3-147 375-514 (606)
61 TIGR02795 tol_pal_ybgF tol-pal 99.0 2.5E-08 5.4E-13 72.3 12.8 90 1-90 15-110 (119)
62 KOG1126 DNA-binding cell divis 99.0 3.7E-09 8.1E-14 98.3 10.1 117 3-125 470-586 (638)
63 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 4.1E-09 8.9E-14 95.3 9.6 69 17-85 70-141 (453)
64 cd05804 StaR_like StaR_like; a 98.9 1E-08 2.2E-13 88.6 11.7 119 1-126 56-178 (355)
65 COG4783 Putative Zn-dependent 98.9 6E-08 1.3E-12 87.9 16.5 151 1-169 319-470 (484)
66 PRK10153 DNA-binding transcrip 98.9 9.9E-09 2.1E-13 95.1 10.7 112 5-125 401-514 (517)
67 PF09976 TPR_21: Tetratricopep 98.9 9.1E-08 2E-12 73.8 14.1 115 2-123 25-145 (145)
68 PF12895 Apc3: Anaphase-promot 98.9 5.8E-09 1.3E-13 73.1 6.5 82 34-122 1-84 (84)
69 TIGR00540 hemY_coli hemY prote 98.9 2.9E-08 6.3E-13 88.9 12.3 119 1-126 276-400 (409)
70 CHL00033 ycf3 photosystem I as 98.9 2.6E-08 5.7E-13 78.3 10.5 80 1-80 48-137 (168)
71 KOG1125 TPR repeat-containing 98.8 1.4E-08 3E-13 93.4 9.5 116 5-126 411-528 (579)
72 PLN02789 farnesyltranstransfer 98.8 6.3E-08 1.4E-12 84.8 13.2 118 3-126 87-213 (320)
73 PF13432 TPR_16: Tetratricopep 98.8 1.2E-08 2.5E-13 67.9 6.0 56 1-56 10-65 (65)
74 PF12688 TPR_5: Tetratrico pep 98.8 1.5E-07 3.2E-12 71.5 12.6 102 22-126 1-105 (120)
75 KOG4162 Predicted calmodulin-b 98.7 1.3E-07 2.7E-12 89.6 12.5 119 2-126 664-784 (799)
76 KOG1155 Anaphase-promoting com 98.7 1.7E-07 3.7E-12 84.9 12.7 120 1-126 377-496 (559)
77 PRK02603 photosystem I assembl 98.7 1.3E-07 2.9E-12 74.8 9.9 88 1-88 48-152 (172)
78 PRK14574 hmsH outer membrane p 98.7 4.5E-07 9.7E-12 88.2 15.3 116 2-126 82-199 (822)
79 COG4235 Cytochrome c biogenesi 98.7 1E-06 2.3E-11 75.8 15.5 138 4-150 138-278 (287)
80 PF13371 TPR_9: Tetratricopept 98.7 6.7E-08 1.5E-12 65.4 6.6 62 29-90 2-63 (73)
81 PRK10803 tol-pal system protei 98.7 6.9E-07 1.5E-11 76.3 14.0 102 22-126 142-247 (263)
82 PF12895 Apc3: Anaphase-promot 98.7 4.6E-08 1E-12 68.5 5.6 81 1-82 2-84 (84)
83 KOG1173 Anaphase-promoting com 98.7 2.5E-07 5.3E-12 85.3 11.4 119 2-126 394-519 (611)
84 PF14559 TPR_19: Tetratricopep 98.7 8E-08 1.7E-12 64.1 6.1 58 32-89 1-58 (68)
85 PRK14574 hmsH outer membrane p 98.6 6.6E-07 1.4E-11 87.1 13.6 118 2-126 48-166 (822)
86 PRK15331 chaperone protein Sic 98.6 5.7E-07 1.2E-11 71.7 10.6 98 22-125 37-134 (165)
87 PF12688 TPR_5: Tetratrico pep 98.6 9.2E-07 2E-11 67.1 10.8 84 1-84 14-103 (120)
88 TIGR00540 hemY_coli hemY prote 98.6 5.4E-06 1.2E-10 74.3 17.4 118 2-125 98-216 (409)
89 PRK10747 putative protoheme IX 98.6 1.2E-06 2.7E-11 78.2 12.9 115 1-125 276-390 (398)
90 PF13414 TPR_11: TPR repeat; P 98.6 8E-08 1.7E-12 64.4 4.0 53 1-53 16-69 (69)
91 KOG1125 TPR repeat-containing 98.5 3E-07 6.5E-12 84.8 8.6 88 2-89 444-531 (579)
92 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5E-07 1.1E-11 81.9 8.9 72 51-125 70-141 (453)
93 PF13371 TPR_9: Tetratricopept 98.5 5.2E-07 1.1E-11 60.9 7.0 62 2-63 9-70 (73)
94 KOG4555 TPR repeat-containing 98.5 3.3E-06 7.2E-11 65.6 12.0 101 23-125 44-144 (175)
95 PF14559 TPR_19: Tetratricopep 98.5 2.7E-07 5.9E-12 61.5 5.3 64 1-64 4-67 (68)
96 PF13424 TPR_12: Tetratricopep 98.5 2.2E-07 4.7E-12 63.8 4.9 67 19-85 2-75 (78)
97 PF13428 TPR_14: Tetratricopep 98.5 3.6E-07 7.8E-12 56.8 5.0 43 22-64 1-43 (44)
98 KOG1129 TPR repeat-containing 98.4 8.7E-07 1.9E-11 77.8 7.8 155 2-165 270-436 (478)
99 KOG1156 N-terminal acetyltrans 98.4 5.8E-06 1.3E-10 77.4 13.5 143 1-152 54-196 (700)
100 PRK10803 tol-pal system protei 98.4 2.7E-06 5.9E-11 72.6 10.4 89 2-90 157-251 (263)
101 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.4E-06 1.6E-10 73.8 13.5 110 2-120 183-292 (395)
102 COG4235 Cytochrome c biogenesi 98.3 4.2E-06 9.1E-11 72.1 10.4 91 1-91 169-262 (287)
103 KOG1840 Kinesin light chain [C 98.3 3.6E-06 7.9E-11 77.9 10.4 126 1-127 254-398 (508)
104 KOG0547 Translocase of outer m 98.3 3.3E-06 7.1E-11 77.2 9.7 120 1-125 407-532 (606)
105 PRK10747 putative protoheme IX 98.3 1.1E-05 2.5E-10 72.0 13.1 117 2-125 98-216 (398)
106 KOG0548 Molecular co-chaperone 98.3 2.7E-06 5.8E-11 78.1 8.7 91 1-91 371-461 (539)
107 KOG1840 Kinesin light chain [C 98.3 1.7E-05 3.6E-10 73.5 14.0 125 1-126 296-439 (508)
108 KOG3060 Uncharacterized conser 98.3 1.1E-05 2.4E-10 68.5 11.7 119 2-126 66-184 (289)
109 PF13431 TPR_17: Tetratricopep 98.3 5.7E-07 1.2E-11 53.3 2.8 34 44-77 1-34 (34)
110 KOG2076 RNA polymerase III tra 98.3 1.2E-05 2.7E-10 77.4 12.9 88 32-125 149-236 (895)
111 PRK10866 outer membrane biogen 98.3 4.1E-05 8.9E-10 64.5 14.8 124 2-126 46-205 (243)
112 KOG1173 Anaphase-promoting com 98.3 1E-05 2.3E-10 74.8 11.5 142 3-154 361-505 (611)
113 KOG2002 TPR-containing nuclear 98.3 6.1E-06 1.3E-10 80.0 10.2 139 2-149 626-764 (1018)
114 KOG2076 RNA polymerase III tra 98.2 5.3E-05 1.1E-09 73.1 15.7 120 1-126 152-271 (895)
115 KOG4162 Predicted calmodulin-b 98.2 6.9E-06 1.5E-10 78.1 9.7 89 2-90 698-788 (799)
116 KOG0624 dsRNA-activated protei 98.2 7.3E-06 1.6E-10 72.5 8.3 103 18-126 34-136 (504)
117 KOG0550 Molecular chaperone (D 98.2 1.9E-05 4E-10 71.0 10.9 119 2-126 217-351 (486)
118 COG4783 Putative Zn-dependent 98.2 5.1E-05 1.1E-09 69.2 13.6 102 19-126 303-404 (484)
119 KOG0543 FKBP-type peptidyl-pro 98.1 1.1E-05 2.5E-10 71.9 8.9 120 2-126 222-356 (397)
120 PF06552 TOM20_plant: Plant sp 98.1 7.8E-06 1.7E-10 66.1 7.1 86 4-89 7-113 (186)
121 PRK04841 transcriptional regul 98.1 5.2E-05 1.1E-09 73.6 13.6 125 1-126 465-603 (903)
122 KOG0548 Molecular co-chaperone 98.1 1.3E-05 2.9E-10 73.5 8.4 89 2-90 16-104 (539)
123 PRK14720 transcript cleavage f 98.1 3.6E-05 7.8E-10 75.4 11.7 117 1-126 44-179 (906)
124 KOG3060 Uncharacterized conser 98.1 7.5E-05 1.6E-09 63.5 12.1 120 1-125 99-220 (289)
125 PRK04841 transcriptional regul 98.1 5.6E-05 1.2E-09 73.3 12.9 124 1-125 504-641 (903)
126 PF09976 TPR_21: Tetratricopep 98.1 3.8E-05 8.3E-10 59.0 9.2 82 1-83 61-145 (145)
127 KOG1174 Anaphase-promoting com 98.0 2.7E-05 5.8E-10 70.3 9.2 118 2-126 382-501 (564)
128 KOG2002 TPR-containing nuclear 98.0 7.8E-05 1.7E-09 72.6 12.9 122 1-125 212-336 (1018)
129 PF12569 NARP1: NMDA receptor- 98.0 0.00011 2.3E-09 68.5 13.3 123 1-124 207-333 (517)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 3.9E-05 8.6E-10 69.1 9.7 82 2-83 214-295 (395)
131 PF13525 YfiO: Outer membrane 98.0 0.00028 6.1E-09 57.5 13.8 125 1-126 18-171 (203)
132 KOG1174 Anaphase-promoting com 98.0 0.0002 4.3E-09 64.7 13.6 120 2-126 314-434 (564)
133 KOG0624 dsRNA-activated protei 98.0 7.5E-05 1.6E-09 66.2 10.2 124 1-125 51-184 (504)
134 PRK15331 chaperone protein Sic 97.9 4.8E-05 1E-09 60.7 8.2 84 2-85 51-134 (165)
135 KOG0550 Molecular chaperone (D 97.9 7.8E-05 1.7E-09 67.1 10.3 124 1-126 182-317 (486)
136 PF13424 TPR_12: Tetratricopep 97.9 3.3E-05 7.1E-10 52.8 6.3 72 53-125 2-75 (78)
137 PF07719 TPR_2: Tetratricopept 97.9 2.4E-05 5.3E-10 45.0 4.6 34 22-55 1-34 (34)
138 COG1729 Uncharacterized protei 97.9 0.00022 4.7E-09 60.9 12.0 99 25-126 144-245 (262)
139 COG4785 NlpI Lipoprotein NlpI, 97.9 2.8E-05 6.1E-10 65.1 6.2 89 2-90 79-167 (297)
140 PF06552 TOM20_plant: Plant sp 97.9 8.5E-05 1.8E-09 60.2 8.6 85 37-126 6-110 (186)
141 KOG1128 Uncharacterized conser 97.9 9.1E-05 2E-09 70.4 10.1 119 2-126 499-617 (777)
142 COG4700 Uncharacterized protei 97.9 0.00042 9.1E-09 57.0 12.7 113 9-126 77-190 (251)
143 PRK10866 outer membrane biogen 97.9 0.00089 1.9E-08 56.4 15.1 104 21-126 31-154 (243)
144 COG4700 Uncharacterized protei 97.8 0.0005 1.1E-08 56.6 12.5 114 1-121 102-218 (251)
145 PF13512 TPR_18: Tetratricopep 97.8 0.00088 1.9E-08 52.3 13.0 102 22-126 10-129 (142)
146 KOG1156 N-terminal acetyltrans 97.8 5.2E-05 1.1E-09 71.2 7.0 118 2-125 21-138 (700)
147 KOG4234 TPR repeat-containing 97.8 0.0001 2.2E-09 61.2 7.8 87 2-88 109-200 (271)
148 KOG0495 HAT repeat protein [RN 97.8 0.00035 7.5E-09 66.2 12.1 117 1-125 664-782 (913)
149 COG2956 Predicted N-acetylgluc 97.8 0.00042 9.2E-09 60.9 11.8 117 3-126 195-312 (389)
150 PF03704 BTAD: Bacterial trans 97.8 0.00044 9.5E-09 52.8 10.7 84 2-85 20-125 (146)
151 PF13512 TPR_18: Tetratricopep 97.7 0.0004 8.7E-09 54.2 10.1 89 2-90 24-133 (142)
152 KOG1129 TPR repeat-containing 97.7 0.00015 3.2E-09 64.1 8.4 118 2-125 338-458 (478)
153 PF00515 TPR_1: Tetratricopept 97.7 5.4E-05 1.2E-09 43.8 4.0 33 23-55 2-34 (34)
154 KOG4648 Uncharacterized conser 97.7 7.4E-05 1.6E-09 66.3 6.4 89 2-90 111-199 (536)
155 COG2956 Predicted N-acetylgluc 97.7 0.00067 1.4E-08 59.7 12.1 119 3-126 156-279 (389)
156 KOG4642 Chaperone-dependent E3 97.7 0.00012 2.6E-09 61.9 7.2 84 3-86 25-108 (284)
157 PRK14720 transcript cleavage f 97.7 0.00046 9.9E-09 67.8 12.1 75 11-86 105-179 (906)
158 PF12569 NARP1: NMDA receptor- 97.6 0.0006 1.3E-08 63.5 11.6 134 23-170 195-337 (517)
159 PF04733 Coatomer_E: Coatomer 97.6 0.00028 6E-09 61.0 8.6 86 4-89 183-269 (290)
160 PF13431 TPR_17: Tetratricopep 97.6 4.6E-05 1E-09 45.0 2.5 33 11-43 2-34 (34)
161 PF13525 YfiO: Outer membrane 97.6 0.003 6.5E-08 51.4 13.9 110 21-135 4-126 (203)
162 KOG2003 TPR repeat-containing 97.6 0.00047 1E-08 63.2 9.8 112 2-119 504-615 (840)
163 KOG4555 TPR repeat-containing 97.6 0.00037 8.1E-09 54.3 7.9 85 2-86 57-145 (175)
164 PLN03218 maturation of RBCL 1; 97.6 0.0065 1.4E-07 61.1 18.3 20 31-50 588-607 (1060)
165 PF14938 SNAP: Soluble NSF att 97.5 0.00048 1E-08 58.8 8.6 123 2-126 49-185 (282)
166 PF04733 Coatomer_E: Coatomer 97.5 0.00099 2.1E-08 57.6 9.9 121 20-154 129-251 (290)
167 KOG4648 Uncharacterized conser 97.5 0.00046 1E-08 61.3 7.6 93 28-126 103-195 (536)
168 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0071 1.5E-07 44.9 13.1 119 3-126 110-232 (291)
169 KOG1127 TPR repeat-containing 97.4 0.00093 2E-08 65.7 10.0 77 3-79 473-549 (1238)
170 PLN03081 pentatricopeptide (PP 97.4 0.0026 5.6E-08 60.7 12.6 26 56-81 360-385 (697)
171 PF04184 ST7: ST7 protein; In 97.4 0.0018 3.8E-08 59.7 10.8 113 4-122 184-321 (539)
172 PLN03081 pentatricopeptide (PP 97.4 0.003 6.5E-08 60.2 12.9 115 2-124 339-454 (697)
173 KOG1127 TPR repeat-containing 97.4 0.00049 1.1E-08 67.5 7.4 116 4-125 508-659 (1238)
174 PF07719 TPR_2: Tetratricopept 97.4 0.00049 1.1E-08 39.4 4.7 33 56-88 1-33 (34)
175 PLN03218 maturation of RBCL 1; 97.4 0.0084 1.8E-07 60.3 16.0 117 2-125 521-643 (1060)
176 COG1729 Uncharacterized protei 97.3 0.0014 3.1E-08 56.0 9.0 90 1-90 154-249 (262)
177 KOG0543 FKBP-type peptidyl-pro 97.3 0.0013 2.9E-08 59.0 8.9 83 1-83 270-353 (397)
178 KOG2003 TPR repeat-containing 97.3 0.007 1.5E-07 55.7 13.6 133 2-149 538-704 (840)
179 COG0457 NrfG FOG: TPR repeat [ 97.2 0.024 5.1E-07 42.0 13.8 122 2-126 73-197 (291)
180 KOG0495 HAT repeat protein [RN 97.2 0.0037 8E-08 59.5 10.9 117 2-125 598-714 (913)
181 PLN03077 Protein ECB2; Provisi 97.2 0.025 5.3E-07 55.3 16.6 51 30-84 532-582 (857)
182 PF00515 TPR_1: Tetratricopept 97.2 0.0011 2.4E-08 38.2 4.6 33 56-88 1-33 (34)
183 KOG2376 Signal recognition par 97.1 0.0033 7.2E-08 58.9 9.8 114 2-125 26-139 (652)
184 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.4E-08 40.8 4.4 35 56-90 1-35 (44)
185 PLN03077 Protein ECB2; Provisi 97.1 0.013 2.8E-07 57.2 13.8 112 2-122 538-651 (857)
186 KOG4340 Uncharacterized conser 97.0 0.0044 9.6E-08 54.4 9.1 118 3-126 59-208 (459)
187 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.9E-08 37.7 4.1 31 24-54 3-33 (34)
188 KOG1130 Predicted G-alpha GTPa 97.0 0.0053 1.2E-07 55.8 9.7 124 1-128 208-347 (639)
189 KOG1128 Uncharacterized conser 97.0 0.0051 1.1E-07 58.8 9.7 117 2-125 438-582 (777)
190 KOG2796 Uncharacterized conser 97.0 0.013 2.9E-07 50.6 11.3 143 2-153 191-340 (366)
191 COG3071 HemY Uncharacterized e 96.9 0.0067 1.4E-07 54.4 9.6 117 1-127 276-392 (400)
192 PF10300 DUF3808: Protein of u 96.9 0.011 2.3E-07 54.5 11.1 118 3-125 248-376 (468)
193 COG4105 ComL DNA uptake lipopr 96.9 0.083 1.8E-06 45.0 15.5 123 2-126 48-197 (254)
194 COG3071 HemY Uncharacterized e 96.9 0.018 3.8E-07 51.7 11.9 83 2-85 308-390 (400)
195 PF14938 SNAP: Soluble NSF att 96.9 0.016 3.4E-07 49.5 11.0 122 2-125 88-225 (282)
196 KOG2053 Mitochondrial inherita 96.9 0.0085 1.9E-07 58.4 10.2 112 2-120 23-138 (932)
197 KOG3785 Uncharacterized conser 96.8 0.016 3.4E-07 52.0 10.9 154 1-168 70-249 (557)
198 COG3118 Thioredoxin domain-con 96.8 0.012 2.5E-07 51.2 9.9 121 29-161 141-295 (304)
199 KOG4234 TPR repeat-containing 96.8 0.011 2.3E-07 49.4 8.9 94 27-126 100-198 (271)
200 PF12968 DUF3856: Domain of Un 96.7 0.0072 1.6E-07 46.2 7.0 62 21-82 54-126 (144)
201 PRK10941 hypothetical protein; 96.7 0.01 2.2E-07 50.9 8.5 69 23-91 182-250 (269)
202 KOG1308 Hsp70-interacting prot 96.6 0.00077 1.7E-08 59.5 1.4 87 2-88 128-214 (377)
203 PF10300 DUF3808: Protein of u 96.6 0.038 8.2E-07 50.9 12.3 122 2-125 202-334 (468)
204 PF05843 Suf: Suppressor of fo 96.6 0.024 5.2E-07 48.5 10.3 119 4-125 17-136 (280)
205 KOG4642 Chaperone-dependent E3 96.6 0.015 3.3E-07 49.4 8.6 86 35-126 23-108 (284)
206 smart00028 TPR Tetratricopepti 96.6 0.0048 1E-07 32.8 4.0 31 24-54 3-33 (34)
207 PF12968 DUF3856: Domain of Un 96.6 0.049 1.1E-06 41.8 10.5 93 31-124 18-128 (144)
208 COG4976 Predicted methyltransf 96.6 0.0029 6.2E-08 53.5 4.1 62 29-90 2-63 (287)
209 KOG2376 Signal recognition par 96.5 0.069 1.5E-06 50.3 13.4 121 2-126 93-254 (652)
210 KOG0376 Serine-threonine phosp 96.5 0.0019 4E-08 59.1 2.9 90 2-91 18-107 (476)
211 COG4785 NlpI Lipoprotein NlpI, 96.5 0.014 3E-07 49.2 7.8 100 21-126 64-163 (297)
212 PF14561 TPR_20: Tetratricopep 96.4 0.041 8.8E-07 39.5 8.8 80 41-124 7-86 (90)
213 PF14561 TPR_20: Tetratricopep 96.3 0.035 7.5E-07 39.9 8.1 77 7-83 7-85 (90)
214 PF13176 TPR_7: Tetratricopept 96.3 0.0078 1.7E-07 35.5 4.0 27 25-51 2-28 (36)
215 PF13181 TPR_8: Tetratricopept 96.3 0.011 2.4E-07 33.7 4.4 33 56-88 1-33 (34)
216 KOG1941 Acetylcholine receptor 96.3 0.026 5.7E-07 50.7 8.7 126 1-127 135-277 (518)
217 PRK10941 hypothetical protein; 96.2 0.024 5.2E-07 48.7 7.9 68 2-69 195-262 (269)
218 KOG4507 Uncharacterized conser 96.1 0.037 8E-07 52.4 9.3 141 2-150 192-335 (886)
219 PF03704 BTAD: Bacterial trans 96.1 0.091 2E-06 39.8 10.0 91 29-125 13-125 (146)
220 COG3118 Thioredoxin domain-con 96.1 0.29 6.4E-06 42.6 13.8 87 2-88 148-268 (304)
221 PF13176 TPR_7: Tetratricopept 96.0 0.015 3.3E-07 34.2 4.1 28 58-85 1-28 (36)
222 KOG1915 Cell cycle control pro 95.9 0.092 2E-06 48.7 10.6 88 2-89 87-174 (677)
223 PF05843 Suf: Suppressor of fo 95.9 0.19 4.2E-06 42.9 12.2 96 24-125 3-99 (280)
224 KOG1308 Hsp70-interacting prot 95.8 0.0042 9.1E-08 55.0 1.4 87 34-126 126-212 (377)
225 KOG3081 Vesicle coat complex C 95.8 0.3 6.4E-06 42.2 12.4 141 2-161 122-264 (299)
226 COG2976 Uncharacterized protei 95.7 0.18 4E-06 41.5 10.4 94 25-126 92-189 (207)
227 smart00028 TPR Tetratricopepti 95.6 0.023 5E-07 29.9 3.7 32 57-88 2-33 (34)
228 KOG2796 Uncharacterized conser 95.6 0.044 9.5E-07 47.5 6.7 88 2-89 226-319 (366)
229 COG2912 Uncharacterized conser 95.5 0.042 9E-07 47.2 6.5 68 23-90 182-249 (269)
230 PF13281 DUF4071: Domain of un 95.5 0.29 6.3E-06 44.0 12.1 119 2-126 196-335 (374)
231 PF13374 TPR_10: Tetratricopep 95.4 0.033 7.2E-07 32.7 4.2 29 58-86 4-32 (42)
232 PF13174 TPR_6: Tetratricopept 95.4 0.031 6.6E-07 31.3 3.8 31 58-88 2-32 (33)
233 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.046 1E-06 35.5 5.0 40 24-63 3-42 (53)
234 PF13174 TPR_6: Tetratricopept 95.4 0.033 7.2E-07 31.1 3.8 33 23-55 1-33 (33)
235 PF13281 DUF4071: Domain of un 95.3 0.24 5.2E-06 44.6 11.0 105 3-113 156-277 (374)
236 KOG3081 Vesicle coat complex C 95.3 0.3 6.6E-06 42.2 10.9 79 7-85 192-270 (299)
237 PF07721 TPR_4: Tetratricopept 95.3 0.025 5.5E-07 31.0 2.9 24 57-80 2-25 (26)
238 KOG3824 Huntingtin interacting 95.2 0.038 8.2E-07 48.8 5.3 64 2-65 130-193 (472)
239 PF13374 TPR_10: Tetratricopep 95.2 0.05 1.1E-06 31.9 4.4 25 101-126 8-32 (42)
240 COG4976 Predicted methyltransf 95.1 0.039 8.5E-07 46.7 4.9 56 2-57 9-64 (287)
241 PF09613 HrpB1_HrpK: Bacterial 94.8 1 2.3E-05 35.8 12.1 85 33-125 21-105 (160)
242 PF09613 HrpB1_HrpK: Bacterial 94.8 0.27 5.9E-06 39.1 8.7 72 2-73 24-95 (160)
243 KOG1915 Cell cycle control pro 94.8 0.6 1.3E-05 43.5 11.9 116 3-125 381-500 (677)
244 PF07721 TPR_4: Tetratricopept 94.7 0.046 1E-06 29.9 3.0 26 22-47 1-26 (26)
245 KOG0551 Hsp90 co-chaperone CNS 94.7 0.12 2.7E-06 45.8 7.1 86 3-88 96-185 (390)
246 COG4105 ComL DNA uptake lipopr 94.7 0.51 1.1E-05 40.3 10.6 104 21-126 33-146 (254)
247 COG3898 Uncharacterized membra 94.7 0.94 2E-05 41.3 12.7 86 2-88 202-295 (531)
248 KOG3824 Huntingtin interacting 93.9 0.21 4.4E-06 44.3 6.7 61 29-89 123-183 (472)
249 KOG1070 rRNA processing protei 93.8 0.74 1.6E-05 47.5 11.3 119 3-127 1545-1665(1710)
250 KOG0530 Protein farnesyltransf 93.8 1.4 3E-05 38.3 11.3 118 3-126 58-177 (318)
251 KOG1310 WD40 repeat protein [G 93.7 0.22 4.7E-06 46.8 6.9 85 4-88 390-477 (758)
252 KOG0376 Serine-threonine phosp 93.7 0.15 3.3E-06 46.9 5.9 111 29-148 11-121 (476)
253 KOG3785 Uncharacterized conser 93.6 0.51 1.1E-05 42.6 8.8 122 3-126 37-181 (557)
254 KOG2396 HAT (Half-A-TPR) repea 93.6 0.74 1.6E-05 42.9 10.0 85 7-91 90-175 (568)
255 KOG1130 Predicted G-alpha GTPa 93.5 0.11 2.5E-06 47.5 4.6 109 1-109 30-149 (639)
256 TIGR02561 HrpB1_HrpK type III 93.5 2.2 4.8E-05 33.7 11.3 84 34-125 22-105 (153)
257 PF08424 NRDE-2: NRDE-2, neces 92.9 5.1 0.00011 34.9 14.1 122 5-127 48-185 (321)
258 KOG0545 Aryl-hydrocarbon recep 92.7 0.77 1.7E-05 39.5 8.2 89 1-89 191-297 (329)
259 PF12862 Apc5: Anaphase-promot 92.6 0.5 1.1E-05 33.7 6.2 56 33-88 9-73 (94)
260 PF07079 DUF1347: Protein of u 92.4 3.3 7.1E-05 38.5 12.3 103 23-126 7-158 (549)
261 KOG4507 Uncharacterized conser 92.4 0.5 1.1E-05 45.0 7.3 90 1-90 620-710 (886)
262 COG5191 Uncharacterized conser 91.9 0.35 7.6E-06 42.9 5.3 79 13-91 98-177 (435)
263 TIGR02561 HrpB1_HrpK type III 91.6 1.2 2.6E-05 35.2 7.6 96 2-123 24-120 (153)
264 COG2912 Uncharacterized conser 91.5 0.56 1.2E-05 40.4 6.2 66 2-67 195-260 (269)
265 KOG2053 Mitochondrial inherita 91.4 1.9 4.1E-05 42.6 10.2 54 1-54 56-109 (932)
266 PF04781 DUF627: Protein of un 91.3 0.98 2.1E-05 33.9 6.5 64 1-64 9-86 (111)
267 PF08424 NRDE-2: NRDE-2, neces 91.0 5.3 0.00012 34.8 12.0 111 10-126 7-132 (321)
268 COG3914 Spy Predicted O-linked 90.6 1.9 4.1E-05 40.9 9.1 80 9-88 88-174 (620)
269 COG2909 MalT ATP-dependent tra 90.4 2 4.4E-05 42.4 9.4 87 2-88 429-529 (894)
270 COG3898 Uncharacterized membra 90.3 2.5 5.5E-05 38.6 9.3 81 2-84 134-216 (531)
271 COG4941 Predicted RNA polymera 89.9 1.4 3.1E-05 39.3 7.3 61 6-66 347-409 (415)
272 KOG0551 Hsp90 co-chaperone CNS 89.9 1.7 3.8E-05 38.7 7.8 94 27-126 86-183 (390)
273 PF07720 TPR_3: Tetratricopept 89.8 1 2.2E-05 26.7 4.5 29 27-55 6-36 (36)
274 KOG4340 Uncharacterized conser 89.4 2.6 5.6E-05 37.5 8.4 85 31-121 19-103 (459)
275 TIGR03504 FimV_Cterm FimV C-te 88.7 1.7 3.7E-05 27.1 5.1 40 99-146 3-42 (44)
276 PF12862 Apc5: Anaphase-promot 88.6 4.1 8.9E-05 28.8 7.9 60 67-127 9-72 (94)
277 COG2976 Uncharacterized protei 88.3 4.6 0.0001 33.4 8.8 83 2-88 103-191 (207)
278 COG3914 Spy Predicted O-linked 88.3 7.7 0.00017 36.9 11.2 113 11-125 54-171 (620)
279 KOG1941 Acetylcholine receptor 88.2 4.7 0.0001 36.7 9.4 102 23-126 84-192 (518)
280 KOG2610 Uncharacterized conser 87.3 8.7 0.00019 34.7 10.5 114 2-121 117-234 (491)
281 KOG0529 Protein geranylgeranyl 86.5 6.8 0.00015 35.8 9.5 97 5-107 92-194 (421)
282 COG4941 Predicted RNA polymera 86.4 8.2 0.00018 34.7 9.8 119 4-126 212-395 (415)
283 COG2909 MalT ATP-dependent tra 86.1 15 0.00031 36.7 12.1 105 20-125 413-526 (894)
284 KOG2300 Uncharacterized conser 85.9 20 0.00043 33.8 12.3 124 1-125 336-474 (629)
285 KOG2047 mRNA splicing factor [ 85.4 9.4 0.0002 37.0 10.2 86 33-126 149-278 (835)
286 PF10373 EST1_DNA_bind: Est1 D 85.2 2 4.3E-05 35.7 5.3 62 7-68 1-62 (278)
287 KOG3617 WD40 and TPR repeat-co 84.4 19 0.00041 36.2 12.0 61 23-83 913-994 (1416)
288 PF04184 ST7: ST7 protein; In 84.1 5.3 0.00012 37.4 7.8 62 22-83 259-322 (539)
289 KOG3364 Membrane protein invol 83.9 5.3 0.00012 31.3 6.6 67 55-126 31-101 (149)
290 PF11846 DUF3366: Domain of un 83.6 4.4 9.5E-05 32.3 6.5 51 37-88 126-176 (193)
291 PF11846 DUF3366: Domain of un 83.4 4.8 0.0001 32.1 6.7 46 72-124 127-172 (193)
292 PF12854 PPR_1: PPR repeat 82.8 3.1 6.6E-05 24.0 3.9 26 56-81 7-32 (34)
293 PF04910 Tcf25: Transcriptiona 82.7 32 0.00069 30.7 12.1 106 15-124 33-167 (360)
294 COG3947 Response regulator con 82.6 5.2 0.00011 35.2 6.8 61 23-83 280-340 (361)
295 KOG0529 Protein geranylgeranyl 82.4 9.6 0.00021 34.8 8.7 85 5-89 46-144 (421)
296 COG3629 DnrI DNA-binding trans 82.0 8.9 0.00019 33.2 8.0 85 24-125 155-239 (280)
297 KOG1586 Protein required for f 81.1 16 0.00034 31.4 9.0 94 32-126 83-184 (288)
298 KOG1070 rRNA processing protei 81.1 37 0.0008 35.9 12.9 91 31-125 1539-1629(1710)
299 PF10516 SHNi-TPR: SHNi-TPR; 81.0 3.1 6.7E-05 25.1 3.5 28 24-51 3-30 (38)
300 PF04910 Tcf25: Transcriptiona 80.6 35 0.00076 30.4 11.7 97 23-125 104-222 (360)
301 KOG3807 Predicted membrane pro 79.2 31 0.00068 31.2 10.6 110 6-121 202-339 (556)
302 KOG3364 Membrane protein invol 79.0 5.3 0.00012 31.3 5.1 66 24-89 34-104 (149)
303 PF15015 NYD-SP12_N: Spermatog 78.9 12 0.00026 34.7 8.0 117 29-153 183-317 (569)
304 PF07720 TPR_3: Tetratricopept 78.8 7.1 0.00015 23.1 4.6 31 57-87 2-34 (36)
305 PF10345 Cohesin_load: Cohesin 78.5 62 0.0013 30.7 16.1 113 7-126 40-169 (608)
306 PF09986 DUF2225: Uncharacteri 78.5 34 0.00074 28.2 10.2 106 35-146 90-211 (214)
307 KOG2396 HAT (Half-A-TPR) repea 78.2 5.5 0.00012 37.4 5.8 59 4-62 121-180 (568)
308 PF10602 RPN7: 26S proteasome 78.0 33 0.00071 27.3 10.7 102 23-125 37-142 (177)
309 COG0790 FOG: TPR repeat, SEL1 77.9 40 0.00086 28.2 12.4 115 3-126 92-221 (292)
310 smart00386 HAT HAT (Half-A-TPR 77.5 5.8 0.00013 21.2 3.8 28 36-63 1-28 (33)
311 PF12854 PPR_1: PPR repeat 77.2 6.2 0.00013 22.6 4.0 27 21-47 6-32 (34)
312 PF10579 Rapsyn_N: Rapsyn N-te 76.5 15 0.00033 25.9 6.4 52 32-83 16-70 (80)
313 PF14853 Fis1_TPR_C: Fis1 C-te 76.2 6.3 0.00014 25.4 4.2 31 59-89 4-34 (53)
314 KOG1914 mRNA cleavage and poly 75.4 16 0.00034 34.8 8.0 73 46-125 10-82 (656)
315 KOG0396 Uncharacterized conser 75.1 64 0.0014 29.2 12.0 142 24-170 118-265 (389)
316 KOG2471 TPR repeat-containing 74.4 8.1 0.00018 36.4 5.8 102 1-107 253-381 (696)
317 KOG2047 mRNA splicing factor [ 73.9 77 0.0017 31.0 12.2 118 3-125 440-579 (835)
318 PF10579 Rapsyn_N: Rapsyn N-te 73.7 9.6 0.00021 26.9 4.8 49 3-51 21-72 (80)
319 PF02259 FAT: FAT domain; Int 73.1 57 0.0012 27.6 11.9 67 18-84 142-212 (352)
320 PRK15180 Vi polysaccharide bio 72.5 27 0.00059 33.1 8.7 49 35-83 302-350 (831)
321 PF10255 Paf67: RNA polymerase 72.1 32 0.0007 31.4 9.1 103 17-125 68-193 (404)
322 PF10373 EST1_DNA_bind: Est1 D 71.2 17 0.00036 30.0 6.7 45 41-85 1-45 (278)
323 PF14863 Alkyl_sulf_dimr: Alky 70.4 12 0.00027 29.0 5.3 48 27-74 75-122 (141)
324 KOG1586 Protein required for f 70.4 49 0.0011 28.5 9.1 93 32-125 44-143 (288)
325 KOG1585 Protein required for f 70.1 73 0.0016 27.6 13.1 144 6-151 11-166 (308)
326 PF10607 CLTH: CTLH/CRA C-term 69.6 45 0.00097 25.0 8.3 99 68-172 13-118 (145)
327 PF10516 SHNi-TPR: SHNi-TPR; 69.5 10 0.00023 22.7 3.7 29 58-86 3-31 (38)
328 PF10602 RPN7: 26S proteasome 69.4 22 0.00049 28.3 6.8 68 56-126 36-103 (177)
329 PF11207 DUF2989: Protein of u 66.7 59 0.0013 26.9 8.8 60 54-116 139-198 (203)
330 KOG3617 WD40 and TPR repeat-co 66.6 58 0.0013 33.0 9.9 97 24-124 860-995 (1416)
331 COG4455 ImpE Protein of avirul 66.3 42 0.00091 28.6 7.9 62 29-90 8-69 (273)
332 cd02679 MIT_spastin MIT: domai 66.0 12 0.00026 26.3 4.0 33 37-84 4-36 (79)
333 COG5191 Uncharacterized conser 65.6 5.7 0.00012 35.4 2.8 64 5-68 124-190 (435)
334 PF08631 SPO22: Meiosis protei 65.2 51 0.0011 27.9 8.6 80 34-114 5-102 (278)
335 cd02682 MIT_AAA_Arch MIT: doma 65.2 12 0.00026 26.0 3.9 29 41-84 6-34 (75)
336 cd02681 MIT_calpain7_1 MIT: do 65.0 12 0.00026 26.0 3.8 31 40-85 5-35 (76)
337 KOG2471 TPR repeat-containing 63.9 21 0.00045 33.8 6.1 63 23-85 620-684 (696)
338 cd02680 MIT_calpain7_2 MIT: do 62.8 15 0.00032 25.5 4.0 34 38-86 3-36 (75)
339 PF04212 MIT: MIT (microtubule 62.8 16 0.00035 24.2 4.1 18 68-85 17-34 (69)
340 PF09986 DUF2225: Uncharacteri 62.0 53 0.0012 27.1 7.8 65 22-86 118-195 (214)
341 KOG0545 Aryl-hydrocarbon recep 61.7 22 0.00047 30.9 5.5 59 2-60 244-302 (329)
342 PF13041 PPR_2: PPR repeat fam 61.0 22 0.00047 21.6 4.2 16 111-126 18-33 (50)
343 PF04781 DUF627: Protein of un 60.1 70 0.0015 23.9 7.9 60 29-88 3-76 (111)
344 KOG1310 WD40 repeat protein [G 59.4 19 0.00042 34.3 5.2 58 2-59 425-482 (758)
345 TIGR02996 rpt_mate_G_obs repea 59.2 16 0.00036 22.6 3.2 31 11-41 5-35 (42)
346 PF13226 DUF4034: Domain of un 57.6 39 0.00085 29.2 6.5 78 7-88 62-161 (277)
347 cd02678 MIT_VPS4 MIT: domain c 56.4 22 0.00048 24.1 4.0 34 38-86 3-36 (75)
348 cd02684 MIT_2 MIT: domain cont 55.9 22 0.00048 24.4 3.9 34 38-86 3-36 (75)
349 PRK15490 Vi polysaccharide bio 55.7 1.8E+02 0.004 27.9 11.1 130 24-164 10-139 (578)
350 TIGR02996 rpt_mate_G_obs repea 55.0 25 0.00054 21.8 3.5 33 43-75 3-35 (42)
351 KOG1839 Uncharacterized protei 54.8 63 0.0014 33.6 8.2 113 10-125 960-1086(1236)
352 cd02683 MIT_1 MIT: domain cont 54.6 26 0.00055 24.2 4.0 33 39-86 4-36 (77)
353 PRK13184 pknD serine/threonine 54.6 50 0.0011 33.4 7.5 88 3-91 490-587 (932)
354 COG0790 FOG: TPR repeat, SEL1 54.1 1.3E+02 0.0028 25.0 14.7 134 3-155 56-203 (292)
355 KOG1550 Extracellular protein 51.9 2.1E+02 0.0046 26.9 11.5 115 3-126 264-394 (552)
356 smart00745 MIT Microtubule Int 51.2 31 0.00067 23.2 4.0 33 38-85 5-37 (77)
357 PRK15180 Vi polysaccharide bio 50.5 1.4E+02 0.003 28.5 9.2 84 2-88 303-389 (831)
358 PF10952 DUF2753: Protein of u 49.2 1.1E+02 0.0024 23.7 7.0 87 25-119 4-109 (140)
359 PF15015 NYD-SP12_N: Spermatog 49.0 52 0.0011 30.7 6.1 78 2-79 197-285 (569)
360 KOG1585 Protein required for f 48.8 1.8E+02 0.0039 25.3 9.4 121 4-125 87-219 (308)
361 PF07219 HemY_N: HemY protein 48.8 96 0.0021 22.4 6.6 45 26-70 63-107 (108)
362 TIGR00756 PPR pentatricopeptid 48.6 41 0.00089 17.8 3.7 19 107-126 12-30 (35)
363 PF04212 MIT: MIT (microtubule 48.2 43 0.00093 22.1 4.3 27 24-50 7-33 (69)
364 cd02682 MIT_AAA_Arch MIT: doma 47.7 79 0.0017 21.9 5.6 50 24-73 8-64 (75)
365 PF04190 DUF410: Protein of un 45.9 1.2E+02 0.0025 25.7 7.6 28 19-46 87-114 (260)
366 PF08631 SPO22: Meiosis protei 45.8 1.8E+02 0.004 24.5 14.7 118 2-125 7-150 (278)
367 COG3629 DnrI DNA-binding trans 45.7 93 0.002 27.0 6.9 79 38-124 137-215 (280)
368 KOG3783 Uncharacterized conser 45.1 2.1E+02 0.0045 27.3 9.5 68 22-89 449-524 (546)
369 PHA02537 M terminase endonucle 45.0 41 0.00089 28.3 4.5 18 107-125 190-207 (230)
370 PF07079 DUF1347: Protein of u 44.2 68 0.0015 30.1 6.1 61 22-83 460-522 (549)
371 PF11817 Foie-gras_1: Foie gra 44.0 65 0.0014 26.9 5.7 52 73-125 155-207 (247)
372 cd02677 MIT_SNX15 MIT: domain 43.8 32 0.00069 23.7 3.1 34 38-86 3-36 (75)
373 PRK15326 type III secretion sy 43.5 85 0.0019 22.1 5.2 44 24-67 9-52 (80)
374 KOG2422 Uncharacterized conser 43.1 2.9E+02 0.0064 26.7 10.1 114 31-147 247-392 (665)
375 PF02259 FAT: FAT domain; Int 43.0 2E+02 0.0044 24.2 11.5 88 2-89 160-291 (352)
376 KOG1538 Uncharacterized conser 42.8 71 0.0015 31.5 6.2 82 2-107 787-869 (1081)
377 PF11207 DUF2989: Protein of u 42.6 1.4E+02 0.003 24.7 7.2 56 20-76 139-198 (203)
378 smart00745 MIT Microtubule Int 42.4 54 0.0012 22.0 4.1 26 25-50 11-36 (77)
379 PF01535 PPR: PPR repeat; Int 42.3 47 0.001 17.3 3.2 17 64-80 8-24 (31)
380 TIGR03362 VI_chp_7 type VI sec 42.0 2.4E+02 0.0051 24.6 12.1 118 2-125 113-279 (301)
381 PF11817 Foie-gras_1: Foie gra 40.9 93 0.002 25.9 6.1 62 56-118 178-240 (247)
382 cd02679 MIT_spastin MIT: domai 40.8 48 0.001 23.2 3.7 26 25-50 11-36 (79)
383 KOG0530 Protein farnesyltransf 39.3 2.1E+02 0.0045 25.1 8.0 87 5-91 95-182 (318)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 39.2 65 0.0014 24.1 4.5 30 20-49 97-126 (126)
385 PF04053 Coatomer_WDAD: Coatom 38.4 3.2E+02 0.0069 25.1 11.7 58 53-124 344-401 (443)
386 PF12921 ATP13: Mitochondrial 38.0 1.7E+02 0.0037 21.9 8.7 63 25-87 5-83 (126)
387 KOG0546 HSP90 co-chaperone CPR 37.8 46 0.001 30.0 3.9 58 31-88 284-341 (372)
388 PF02184 HAT: HAT (Half-A-TPR) 36.4 40 0.00087 19.6 2.2 18 37-54 2-19 (32)
389 PRK15490 Vi polysaccharide bio 35.9 2.2E+02 0.0048 27.3 8.3 74 5-80 25-98 (578)
390 PHA02537 M terminase endonucle 34.8 45 0.00097 28.1 3.2 22 69-90 191-212 (230)
391 COG5107 RNA14 Pre-mRNA 3'-end 34.7 1.7E+02 0.0037 27.7 7.1 76 44-126 30-106 (660)
392 PF09797 NatB_MDM20: N-acetylt 34.3 1.7E+02 0.0037 25.7 7.0 47 36-82 197-243 (365)
393 PRK13184 pknD serine/threonine 33.9 3.9E+02 0.0084 27.3 10.1 93 31-126 484-582 (932)
394 COG4455 ImpE Protein of avirul 33.6 98 0.0021 26.4 5.0 61 2-62 15-75 (273)
395 KOG4814 Uncharacterized conser 33.1 5E+02 0.011 25.8 10.9 97 24-126 356-458 (872)
396 PF13934 ELYS: Nuclear pore co 32.6 2.9E+02 0.0062 22.8 8.9 103 8-124 66-168 (226)
397 PF01239 PPTA: Protein prenylt 32.2 91 0.002 17.0 4.2 27 42-68 3-29 (31)
398 PF10255 Paf67: RNA polymerase 31.6 72 0.0016 29.2 4.2 49 1-50 135-192 (404)
399 PF04053 Coatomer_WDAD: Coatom 31.5 4.2E+02 0.009 24.4 11.3 63 96-179 348-410 (443)
400 PF04505 Dispanin: Interferon- 31.4 42 0.00091 23.4 2.2 22 31-52 46-67 (82)
401 PF14852 Fis1_TPR_N: Fis1 N-te 29.4 1.2E+02 0.0025 17.8 3.5 28 57-84 2-32 (35)
402 PF05053 Menin: Menin; InterP 28.9 1.5E+02 0.0032 28.5 5.8 66 19-84 274-346 (618)
403 PF08238 Sel1: Sel1 repeat; I 28.9 1.1E+02 0.0024 16.9 3.8 13 72-84 24-36 (39)
404 KOG1550 Extracellular protein 28.4 5E+02 0.011 24.4 11.0 113 5-126 229-358 (552)
405 cd02656 MIT MIT: domain contai 28.0 1.3E+02 0.0028 20.0 4.1 19 68-86 18-36 (75)
406 PF13812 PPR_3: Pentatricopept 27.4 1.1E+02 0.0023 16.3 3.7 22 61-82 6-27 (34)
407 PF09205 DUF1955: Domain of un 27.4 3.1E+02 0.0068 21.6 8.0 54 31-84 95-148 (161)
408 PF02064 MAS20: MAS20 protein 27.2 1.1E+02 0.0023 23.2 3.9 28 27-54 68-95 (121)
409 PRK11619 lytic murein transgly 26.7 5E+02 0.011 25.2 9.2 50 34-83 324-373 (644)
410 KOG0985 Vesicle coat protein c 26.6 4.6E+02 0.01 27.6 9.0 60 20-84 1102-1161(1666)
411 KOG3616 Selective LIM binding 24.2 1.3E+02 0.0028 30.4 4.6 60 20-79 993-1057(1636)
412 PF06744 DUF1215: Protein of u 23.1 55 0.0012 24.4 1.7 40 140-179 18-58 (125)
413 PF14863 Alkyl_sulf_dimr: Alky 22.8 77 0.0017 24.5 2.5 38 2-39 84-121 (141)
414 PRK11619 lytic murein transgly 22.3 7.2E+02 0.016 24.1 12.4 93 25-124 282-374 (644)
415 cd00280 TRFH Telomeric Repeat 21.9 2E+02 0.0043 23.7 4.7 36 29-65 118-153 (200)
416 smart00299 CLH Clathrin heavy 21.9 3.2E+02 0.007 19.9 9.7 48 33-81 18-65 (140)
417 KOG2997 F-box protein FBX9 [Ge 21.1 1.1E+02 0.0024 27.3 3.3 35 39-88 17-51 (366)
418 KOG4814 Uncharacterized conser 21.0 4.6E+02 0.01 26.0 7.6 83 3-85 369-457 (872)
419 PF02064 MAS20: MAS20 protein 20.9 1.6E+02 0.0035 22.3 3.8 30 59-88 66-95 (121)
420 PF12583 TPPII_N: Tripeptidyl 20.4 2.6E+02 0.0056 21.7 4.8 38 31-68 85-122 (139)
No 1
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=1.5e-32 Score=237.31 Aligned_cols=156 Identities=33% Similarity=0.536 Sum_probs=140.9
Q ss_pred CCChHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~----p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
+|+....+..++|++|.| |.++|++||+||+|+|+|.|++||+.++||+++||+|+||+|+++||++|.||++||.
T Consensus 150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 588999999999999984 4558999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccc
Q 029491 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV 156 (192)
Q Consensus 77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~ 156 (192)
+||.+....|... .++.+||+||.|++|++.+ .|+.|+.+||+.|.++.+ -.|+++++|||++.|+++
T Consensus 230 eFM~~ted~Wr~s-~mlasHNyWH~Al~~iE~a-eye~aleIyD~ei~k~l~---------k~Da~a~~~~ld~dgv~~- 297 (491)
T KOG2610|consen 230 EFMYKTEDDWRQS-WMLASHNYWHTALFHIEGA-EYEKALEIYDREIWKRLE---------KDDAVARDVYLDLDGVDL- 297 (491)
T ss_pred HHHHhcccchhhh-hHHHhhhhHHHHHhhhccc-chhHHHHHHHHHHHHHhh---------ccchhhhhhhhhhhhHHh-
Confidence 9999999999975 4478999999999999987 999999999999999753 357999999999999974
Q ss_pred hhchHHHHHHHH
Q 029491 157 FGNRLKVLADCV 168 (192)
Q Consensus 157 ~~~rw~~l~~~~ 168 (192)
-.++|..|-...
T Consensus 298 ~~d~~~kld~la 309 (491)
T KOG2610|consen 298 RSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHHHhhh
Confidence 468888554433
No 2
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.88 E-value=1.8e-21 Score=168.19 Aligned_cols=163 Identities=38% Similarity=0.608 Sum_probs=139.6
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
+...+...+....+..|+++++++++|+++.++|++++|++.++++++++|+++++++.+|+++.++|++++|+.+++++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 33444455555557889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHH
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 162 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~ 162 (192)
++.+|..+. +..|++||+|.+++..| ++++|+++|++.+... + .+....+.+++++++||+.+.|.. ++.+||+
T Consensus 175 l~~~~~~~~-~~~~~~~~la~~~~~~G-~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~w~ 248 (355)
T cd05804 175 RDTWDCSSM-LRGHNWWHLALFYLERG-DYEAALAIYDTHIAPS--A-ESDPALDLLDAASLLWRLELAGHV-DVGDRWE 248 (355)
T ss_pred hhccCCCcc-hhHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccc--c-CCChHHHHhhHHHHHHHHHhcCCC-ChHHHHH
Confidence 999987544 46789999999999999 9999999999987663 2 223345556888999999999963 6899999
Q ss_pred HHHHHHhhc
Q 029491 163 VLADCVADQ 171 (192)
Q Consensus 163 ~l~~~~~~~ 171 (192)
.+++.....
T Consensus 249 ~~~~~~~~~ 257 (355)
T cd05804 249 DLADYAAWH 257 (355)
T ss_pred HHHHHHHhh
Confidence 999887553
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=2.9e-15 Score=116.29 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=100.4
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (192)
Q Consensus 8 l~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p 87 (192)
.+.++++++.+|++ +..+|.++...|++++|.+.+++++.++|+++.++.++|.++..+|++++|+.+|++++.+.|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688999999997 345799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 88 ~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++. .++++|.++...| ++++|+..|++++...
T Consensus 90 ~~~~-----a~~~lg~~l~~~g-~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPE-----PVYQTGVCLKMMG-EPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 8653 4556999999999 9999999999999875
No 4
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=5.6e-14 Score=130.29 Aligned_cols=118 Identities=8% Similarity=-0.053 Sum_probs=106.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++++|.++. .+ ++++..++..| ++++|++.+++.+..
T Consensus 398 Al~l~P~~~~---~~--~~~~~~~~~~g-~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 398 CLKLDPTRAA---AG--ITKLWITYYHT-GIDDAIRLGDELRSQ 435 (553)
T ss_pred HHhcCCCChh---hH--HHHHHHHHhcc-CHHHHHHHHHHHHHh
Confidence 9999999642 22 23455566778 899999999998765
No 5
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=1.5e-13 Score=112.32 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=109.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH-HhcCC--HHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-QHDCC--FKEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl-~~~Gr--~~eai~~ 78 (192)
++.++++..+++++..+|+++.++.++|.++...|++++|+.++++|++++|+++..+.++|.++ ...|+ .++|+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999997 56688 5999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++++..|+++ . ...++|..+++.| +|++|+..|++.+...
T Consensus 133 l~~al~~dP~~~---~--al~~LA~~~~~~g-~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 133 IDKALALDANEV---T--ALMLLASDAFMQA-DYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHhCCCCh---h--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 999999999964 3 3446999999999 9999999999999885
No 6
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.56 E-value=1.1e-13 Score=131.55 Aligned_cols=159 Identities=9% Similarity=-0.047 Sum_probs=131.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++++.+.++++++.|++..++..++.+|.+.+++++|+..++++|+.+|+++.+++.+|.++...|+++||++.|+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCCh----HHHHHHHHHHHHhhhcCcccc
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP----EVYLNALGLLLRVYVRGELDV 156 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~----~~~~da~sLL~Rl~l~g~~~~ 156 (192)
+++...|+.+ .+.. .+|..+.+.| +.++|...|++++... .+++--. .++..-..+|=||+-+|..++
T Consensus 179 ~~~~~~p~~~---~~~~--~~a~~l~~~G-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (694)
T PRK15179 179 RLSRQHPEFE---NGYV--GWAQSLTRRG-ALWRARDVLQAGLDAI--GDGARKLTRRLVDLNADLAALRRLGVEGDGRD 250 (694)
T ss_pred HHHhcCCCcH---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHHhh--CcchHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence 9999777643 3334 4888889999 9999999999999985 2222111 122234567889998887655
Q ss_pred hhchHHHHHHH
Q 029491 157 FGNRLKVLADC 167 (192)
Q Consensus 157 ~~~rw~~l~~~ 167 (192)
+.-|--.+-..
T Consensus 251 ~~~~~~~~~~~ 261 (694)
T PRK15179 251 VPVSILVLEKM 261 (694)
T ss_pred CceeeeeHHHH
Confidence 55554333333
No 7
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.55 E-value=7.3e-14 Score=137.11 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=112.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++..+|+ +.++.++|.++.+.|++++|++.++++++++|+++.++.++|.++..+|++++|++.++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 49999999999999999997 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++.|+++ ..++++|.++..+| ++++|++.|++++...
T Consensus 668 ~AL~l~P~~~-----~a~~nLA~al~~lG-d~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 668 RAHKGLPDDP-----ALIRQLAYVNQRLD-DMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 9999999864 36678999999999 9999999999999885
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.55 E-value=7.6e-14 Score=129.00 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=114.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.+-|++.++|+++..|..+.++.++|.+|.+.|+..||+.++.+||.++|+.+.+..+||.++.++|.+++|+.+|+
T Consensus 299 qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.++...|.+. .+|++ +|..+-..| ++++|+..|..+|+..
T Consensus 379 ~al~v~p~~a---aa~nN--La~i~kqqg-nl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 379 KALEVFPEFA---AAHNN--LASIYKQQG-NLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHhhChhhh---hhhhh--HHHHHHhcc-cHHHHHHHHHHHHhcC
Confidence 9999998864 67886 999999998 9999999999999884
No 9
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=8.2e-14 Score=108.15 Aligned_cols=90 Identities=9% Similarity=-0.173 Sum_probs=88.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.+++++|.++..+|++++|+..++
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCC
Q 029491 81 ECSSTWSSCS 90 (192)
Q Consensus 81 ~a~~~~p~~~ 90 (192)
+++...|+++
T Consensus 117 ~Al~~~p~~~ 126 (144)
T PRK15359 117 TAIKMSYADA 126 (144)
T ss_pred HHHHhCCCCh
Confidence 9999999965
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=2.7e-13 Score=112.66 Aligned_cols=121 Identities=15% Similarity=0.117 Sum_probs=111.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+...|...+++||+++|++..+|..+|+.++..|+.+-|.+.+|+||.++|++...+.|-|.-++.+|++++|..++++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|+.. |..+. ....+-++++|.+..| +.+.|...|.+.+...
T Consensus 129 Al~~-P~Y~~--~s~t~eN~G~Cal~~g-q~~~A~~~l~raL~~d 169 (250)
T COG3063 129 ALAD-PAYGE--PSDTLENLGLCALKAG-QFDQAEEYLKRALELD 169 (250)
T ss_pred HHhC-CCCCC--cchhhhhhHHHHhhcC-CchhHHHHHHHHHHhC
Confidence 9954 55433 2335667999999999 8999999999999885
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.51 E-value=2e-13 Score=126.27 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=131.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|..++|...++++++..|+.+.+++++|.++.++|.+++|+.++..||.+.|+.+.|+.++|.++-++|+..+|+..|+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 36678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhch
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~r 160 (192)
+|+..+|.. ..+|++ +|..|-+.| +..+|++.|++++-.+ | +.+. .-++|+-+|+..-.+.|-..|
T Consensus 447 rAI~~nPt~---AeAhsN--Lasi~kDsG-ni~~AI~sY~~aLklk--P-Dfpd-----A~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 447 RAIQINPTF---AEAHSN--LASIYKDSG-NIPEAIQSYRTALKLK--P-DFPD-----AYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHhcCcHH---HHHHhh--HHHHhhccC-CcHHHHHHHHHHHccC--C-CCch-----hhhHHHHHHHHHhcccchHHH
Confidence 888888774 467775 999999998 8999999999998774 3 3222 368899999998777677888
Q ss_pred HHHHHHHHhhcc
Q 029491 161 LKVLADCVADQV 172 (192)
Q Consensus 161 w~~l~~~~~~~~ 172 (192)
..+|.....++.
T Consensus 513 ~~kl~sivrdql 524 (966)
T KOG4626|consen 513 MKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHHH
Confidence 888888877754
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=4e-13 Score=124.63 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=106.2
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ 73 (192)
..++|+..+++++..+|+++.++..+|.++... +++++|+..+++|++++|+++.++..+|.++..+|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356899999999999999999999999876533 44899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++.++++++++|+++ ..| .++|.++...| ++++|+..|++++...
T Consensus 356 ~A~~~~~~Al~l~P~~~---~a~--~~lg~~l~~~G-~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 356 VGSLLFKQANLLSPISA---DIK--YYYGWNLFMAG-QLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHHHHHHhCCCCH---HHH--HHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 99999999999999964 344 45999999998 9999999999999885
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=1.5e-12 Score=111.95 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=103.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|+..+|+..+.+++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++++..|+++. ...| +.+. ...+ ++++|+..+++.+..
T Consensus 157 ~al~~~P~~~~----~~~~-~~l~-~~~~-~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 157 AFYQDDPNDPY----RALW-LYLA-ESKL-DPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHhCCCCHH----HHHH-HHHH-HccC-CHHHHHHHHHHHHhh
Confidence 99999998641 1333 2222 3345 899999999887654
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=2.8e-12 Score=96.46 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=103.6
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
..+++++..+|++..+...+|..+...|++++|.+.+++++.++|+++.++..+|-++..+|++++|+..+++++...|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++. .+.++|.++...| ++++|+..|++.+...
T Consensus 84 ~~~-----~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 DPR-----PYFHAAECLLALG-EPESALKALDLAIEIC 115 (135)
T ss_pred ChH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 643 3345999999999 9999999999999875
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=2e-12 Score=120.93 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|++..++..+|.++..+|++++|+..++
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++. .+..+|.++...| ++++|+..|++++...
T Consensus 458 ~al~~~P~~~~-----~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 458 RCKKNFPEAPD-----VYNYYGELLLDQN-KFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHhCCCChH-----HHHHHHHHHHHcc-CHHHHHHHHHHHHhcC
Confidence 99999888642 3445899999998 8999999999999874
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.43 E-value=5.8e-12 Score=119.22 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=95.2
Q ss_pred CChHH----HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 2 GRPDL----CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 2 G~~~~----al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
|++++ |+..+++++..+|+++.++.++|.++.+.|++++|+..++++++++|+++.++..+|.++..+|++++|++
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56654 78888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.++++++..|... . ....+|.++...| ++++|++.|++.+...
T Consensus 340 ~l~~al~~~P~~~---~--~~~~~a~al~~~G-~~deA~~~l~~al~~~ 382 (656)
T PRK15174 340 EFVQLAREKGVTS---K--WNRYAAAALLQAG-KTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHhCccch---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 8888888877642 1 2223577777888 8899999998887764
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=4.4e-12 Score=109.08 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=106.0
Q ss_pred CChHHHHHHHHhhcC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 2 GRPDLCFDIIHQVLP---YNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 2 G~~~~al~~~~ral~---~~p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
++.+.++..+.+++. .+|+ .+..+..+|.++...|++++|+..+++|++++|+++.++.++|.++..+|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345678888888985 4443 478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+++++++.|+.. . .+.++|.++...| ++++|++.|++.+...
T Consensus 120 ~~~~Al~l~P~~~---~--a~~~lg~~l~~~g-~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 120 AFDSVLELDPTYN---Y--AYLNRGIALYYGG-RYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHhCCCCH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999999999853 2 4556999999998 9999999999999874
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.42 E-value=6.9e-12 Score=118.74 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=111.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD----AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e----Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
.|++++|+..+++++...|+++.++.++|.++.+.|++++ |+..++++++++|+++.++.++|.++..+|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4889999999999999999999999999999999999996 899999999999999999999999999999999999
Q ss_pred HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+++++.+.|+++ ..+ -++|.++...| ++++|++.|++.+...
T Consensus 305 ~~l~~al~l~P~~~---~a~--~~La~~l~~~G-~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 305 PLLQQSLATHPDLP---YVR--AMYARALRQVG-QYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHhCCCCH---HHH--HHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 99999999999864 333 35999999999 9999999999998764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.41 E-value=9.5e-12 Score=116.36 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=109.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++..+|+++..+..+|.++.+.|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++.+.|++. ..+ -.+|.++...| ++++|+..|++.+...
T Consensus 424 kal~l~P~~~---~~~--~~la~~~~~~g-~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 424 KSIDLDPDFI---FSH--IQLGVTQYKEG-SIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHcCccCH---HHH--HHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999998853 333 35899999998 8999999999998763
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=3e-11 Score=95.42 Aligned_cols=122 Identities=15% Similarity=0.211 Sum_probs=109.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++++..+++++..+|+++.++..+|.++...|++++|++.+++++.++|+++.++.++|.++..+|++++|+..++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...+. +. ....+..+|.++...| ++++|...|++.+...
T Consensus 124 ~~~~~~~~-~~--~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 124 QAIEDPLY-PQ--PARSLENAGLCALKAG-DFDKAEKYLTRALQID 165 (234)
T ss_pred HHHhcccc-cc--chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 99975332 21 2345667899999998 8999999999998774
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.5e-12 Score=120.55 Aligned_cols=138 Identities=12% Similarity=0.160 Sum_probs=122.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++++.|+..++||+.++|+++|++..+|.-+..+.+||.|...+|.||.++|++-.||.-+|.|+..+++++.|.-++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (192)
|+.++|.+ ..+.+| ++..+-.+| +.|+|+.+|++++..+ + .+ +.-....+++|+-+.=
T Consensus 515 A~~INP~n-svi~~~----~g~~~~~~k-~~d~AL~~~~~A~~ld--~-kn--~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 515 AVEINPSN-SVILCH----IGRIQHQLK-RKDKALQLYEKAIHLD--P-KN--PLCKYHRASILFSLGR 572 (638)
T ss_pred hhcCCccc-hhHHhh----hhHHHHHhh-hhhHHHHHHHHHHhcC--C-CC--chhHHHHHHHHHhhcc
Confidence 99999995 444555 777888888 9999999999999885 3 22 2345677888877653
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=3.3e-11 Score=101.92 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=100.0
Q ss_pred CChHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~--~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
|+..++.+.++++... .|+++.++..+|..+...|+.++|++.+++||.++|+|+.+...+++++...|+.+++...+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 6778888888886554 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+......|.++. ++..+|.+++.+| ++++|+.+|++.+...
T Consensus 204 ~~~~~~~~~~~~-----~~~~la~~~~~lg-~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 204 KRLLKAAPDDPD-----LWDALAAAYLQLG-RYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH-HTSCC-----HCHHHHHHHHHHT--HHHHHHHHHHHHHHS
T ss_pred HHHHHHCcCHHH-----HHHHHHHHhcccc-cccccccccccccccc
Confidence 999988888664 5567999999999 9999999999988763
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.1e-10 Score=90.57 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
.|++++++..+++++...|.++.++.++|..+...|++++|+..+++++... |.....+..+|.++..+|++++|+..
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999865 56778999999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++++...|.++ . .+..+|.++...| ++++|...+++.+..
T Consensus 158 ~~~~~~~~~~~~---~--~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 158 LTRALQIDPQRP---E--SLLELAELYYLRG-QYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHhCcCCh---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 999999998853 2 3456999999998 999999999998876
No 24
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.31 E-value=4.7e-11 Score=113.77 Aligned_cols=114 Identities=7% Similarity=-0.093 Sum_probs=101.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
++...+-....+|.++.++.++|-++.+.|++++|+...+++++++|++..|+++++.++..+++++||+..++++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333334445788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 87 p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++. ..|+ ++|.++.+.| +|++|.++|++.+.+.
T Consensus 151 p~~~---~~~~--~~a~~l~~~g-~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 151 SSSA---REIL--LEAKSWDEIG-QSEQADACFERLSRQH 184 (694)
T ss_pred CCCH---HHHH--HHHHHHHHhc-chHHHHHHHHHHHhcC
Confidence 9964 3444 5999999999 9999999999999863
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=3e-12 Score=108.28 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=90.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++|+..+++++..+|+++.+...+++.+.+.|+++++.+..++.....|+|+..+..+|.++...|+.++|+.+++
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...+|+++. ...|+|-++...| +.++|+.++++.+..
T Consensus 239 ~~~~~~p~d~~-----~~~~~a~~l~~~g-~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 239 KALKLNPDDPL-----WLLAYADALEQAG-RKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHSTT-HH-----HHHHHHHHHT-------------------
T ss_pred ccccccccccc-----ccccccccccccc-ccccccccccccccc
Confidence 99999999753 4457999999998 999999999887653
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.28 E-value=1.3e-10 Score=114.39 Aligned_cols=119 Identities=11% Similarity=0.004 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++|...+++++...|++......++..+...|++++|+..+++|++++|+ +.++.++|.++..+|++++|+.+++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 388999999999999999999888888888888889999999999999999996 9999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++.+.|+++ ..|+ ++|.++...| ++++|++.|++++...
T Consensus 634 ~AL~l~Pd~~---~a~~--nLG~aL~~~G-~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 634 AALELEPNNS---NYQA--ALGYALWDSG-DIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999999964 3444 4898899998 9999999999999874
No 27
>PRK11906 transcriptional regulator; Provisional
Probab=99.27 E-value=1e-10 Score=105.70 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=102.3
Q ss_pred hHHHHHHHHhhc---CCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC
Q 029491 4 PDLCFDIIHQVL---PYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (192)
Q Consensus 4 ~~~al~~~~ral---~~~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr 71 (192)
.++|+..+.|++ +.+|+++.+++++|+++... ....+|.+++++|++++|+|+.|+..+|+++-..|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 357888999999 99999999999999987654 245568899999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++.|++++++|..++|+.. ..+.. .|..+...| +.++|.+..++++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A---~~~~~--~~~~~~~~G-~~~~a~~~i~~alrLs 402 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIA---SLYYY--RALVHFHNE-KIEEARICIDKSLQLE 402 (458)
T ss_pred hhhHHHHHHHHhhcCCccH---HHHHH--HHHHHHHcC-CHHHHHHHHHHHhccC
Confidence 9999999999999999964 34444 777777788 9999999999988874
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.26 E-value=7.8e-11 Score=104.14 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=90.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++.+|+..+.+++..+|+++.++..+|.++...|++++|+..+++|+.++|+++.+++.+|.++..+|++++|+..+++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHH
Q 029491 82 CSSTWSSCSSFMYTHNWW 99 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~W 99 (192)
++.+.|+++ ..+.+.
T Consensus 96 al~l~P~~~---~~~~~l 110 (356)
T PLN03088 96 GASLAPGDS---RFTKLI 110 (356)
T ss_pred HHHhCCCCH---HHHHHH
Confidence 999999965 455553
No 29
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.6e-11 Score=103.18 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=92.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
+++.+|++.+.+|+.++|.++.++.+.|-++.+.|.|+.|.+-++.||++||+..-++-.||.++.-+|++++|++.|.+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G 109 (192)
++.+.|++.. +.=||-.+...++
T Consensus 175 aLeldP~Ne~-----~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 175 ALELDPDNES-----YKSNLKIAEQKLN 197 (304)
T ss_pred hhccCCCcHH-----HHHHHHHHHHHhc
Confidence 9999999642 2224555554444
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=1.3e-10 Score=91.80 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
+++=....-+|.-+.+.|++++|+..++-...++|.++..+.+||-|+..+|++++||..|.++..+.|++| . ..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---~--~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---Q--AP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---h--HH
Confidence 555566677888999999999999999999999999999999999999999999999999999999999976 3 44
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|+|.+++..| +.+.|.+.|+.+|..-
T Consensus 107 ~~ag~c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHh
Confidence 57999999999 9999999999999884
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.25 E-value=1.4e-10 Score=108.37 Aligned_cols=118 Identities=10% Similarity=0.035 Sum_probs=98.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+..++...+++++...|+++.++..+|.++...|++++|++.++++++.+|+++.++.+++.++...|+ .+|+..++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 47888888888888888888888888888888888888888888888888888888888888888888888 77888888
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++...|+++. .+-.+|.++...| ++++|+..|++++..
T Consensus 828 ~~~~~~~~~~~-----~~~~~~~~~~~~g-~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 828 KALKLAPNIPA-----ILDTLGWLLVEKG-EADRALPLLRKAVNI 866 (899)
T ss_pred HHHhhCCCCcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 88888887643 2335788888888 888888888888864
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.23 E-value=4.2e-10 Score=105.09 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=99.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|++ .....++.++...|++++|++.+++++..+|+++.+...+|.++..+|+.++|+..++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 478889999999999988887 5566788888999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|+++. ..-+++..+...| + ++|+..|++.+...
T Consensus 795 ~~~~~~p~~~~-----~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 795 TVVKKAPDNAV-----VLNNLAWLYLELK-D-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHhCCCCHH-----HHHHHHHHHHhcC-c-HHHHHHHHHHHhhC
Confidence 99988887532 2234788888888 7 88999999888763
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.22 E-value=3.6e-10 Score=112.95 Aligned_cols=120 Identities=7% Similarity=0.040 Sum_probs=107.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH--------------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-------------- 66 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl-------------- 66 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..++.++
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999999887776653
Q ss_pred ----------------------------HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 029491 67 ----------------------------QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI 118 (192)
Q Consensus 67 ----------------------------~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~ 118 (192)
..+|++++|+..++++++..|+++ . ....+|.++...| ++++|+..
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~---~--~~~~LA~~~~~~G-~~~~A~~~ 517 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV---W--LTYRLAQDLRQAG-QRSQADAL 517 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHH
Confidence 457999999999999999999964 3 3445999999999 99999999
Q ss_pred HHHhhhhh
Q 029491 119 YDNHIWKE 126 (192)
Q Consensus 119 yd~~i~~~ 126 (192)
|++.+...
T Consensus 518 l~~al~~~ 525 (1157)
T PRK11447 518 MRRLAQQK 525 (1157)
T ss_pred HHHHHHcC
Confidence 99998753
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.22 E-value=1.2e-10 Score=95.15 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSL-LELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L-~e~g~--~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
+|++++|+..+++++.++|+++.++..+|.++ ...|+ +++|++.++++++++|+++.++..+|.++.++|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999999999999999987 67787 5999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCCC
Q 029491 78 FMEECSSTWSSCSS 91 (192)
Q Consensus 78 ~~~~a~~~~p~~~~ 91 (192)
.++++++..|...+
T Consensus 166 ~~~~aL~l~~~~~~ 179 (198)
T PRK10370 166 LWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHhhCCCCcc
Confidence 99999999988654
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=1.5e-10 Score=86.93 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=87.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+|...+++++..+|+++.++..+|..+...|++++|+..+++++.++|+++..+..+|+++...|++++|+.+++
T Consensus 30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCC
Q 029491 81 ECSSTWSSCS 90 (192)
Q Consensus 81 ~a~~~~p~~~ 90 (192)
++++..|++.
T Consensus 110 ~al~~~p~~~ 119 (135)
T TIGR02552 110 LAIEICGENP 119 (135)
T ss_pred HHHHhccccc
Confidence 9999999864
No 36
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=4.6e-10 Score=101.49 Aligned_cols=117 Identities=9% Similarity=0.025 Sum_probs=100.7
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
...++++.++||++++|+|+++++.+|+++...|+++.|...++||+.||||++.++...|.++.+.|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHH-HHHhCCCCHHHHHHHHHHhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl-~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++++|.--. .-. --+-+ .|...+ .|+++++|-+....
T Consensus 399 lrLsP~~~~---~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~ 436 (458)
T PRK11906 399 LQLEPRRRK---AVV-IKECVDMYVPNP--LKNNIKLYYKETES 436 (458)
T ss_pred hccCchhhH---HHH-HHHHHHHHcCCc--hhhhHHHHhhcccc
Confidence 999988422 111 12334 456654 89999999775544
No 37
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=5.1e-10 Score=97.93 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=111.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH--HHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF--KEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~--~eai~~ 78 (192)
++.++|+....+++..+|++..++...+.+|...| .++++...+.+++..||++.++++..+.++...|+. ++.+.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 67889999999999999999999999999999999 689999999999999999999999999999999985 788999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++..+|.+ .|.|.|.+.++-..| +++++++.|++.|...
T Consensus 131 ~~kal~~dpkN-----y~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 131 TRKILSLDAKN-----YHAWSHRQWVLRTLG-GWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHhCccc-----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHC
Confidence 99999999984 578889999988888 8999999999999874
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.17 E-value=4.4e-10 Score=112.28 Aligned_cols=120 Identities=12% Similarity=0.108 Sum_probs=107.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH--------------HHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW--------------SQHALCHVL 66 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~--------------A~h~lahvl 66 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|++.. .....|.++
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999998753 234568889
Q ss_pred HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+|++++|+..+++++...|.+. ..+. .+|.+++..| ++++|++.|++++...
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~---~a~~--~Lg~~~~~~g-~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDS---YAVL--GLGDVAMARK-DYAAAERYYQQALRMD 415 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 999999999999999999999854 3333 5999999998 9999999999999874
No 39
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.16 E-value=4.5e-10 Score=94.70 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=102.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+|...++++....|.|+.+++.+|.+|.+.|++++|...+++|++|.|+++....|+|..+.-+|+.+.|...+.
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++.-.-+.++. ..| ++|+..-..| ++++|..+-++.+.+
T Consensus 193 ~a~l~~~ad~~--v~~---NLAl~~~~~g-~~~~A~~i~~~e~~~ 231 (257)
T COG5010 193 PAYLSPAADSR--VRQ---NLALVVGLQG-DFREAEDIAVQELLS 231 (257)
T ss_pred HHHhCCCCchH--HHH---HHHHHHhhcC-ChHHHHhhccccccc
Confidence 98876555432 334 4888888888 899998887665554
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.16 E-value=1.6e-10 Score=77.69 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHhhcc
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWS 87 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-r~~eai~~~~~a~~~~p 87 (192)
+++..+..+|..+...|+|++|+..+.+|+.++|+++.++.++|.++..+| ++++|+..+++++.++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 467889999999999999999999999999999999999999999999999 79999999999999987
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.15 E-value=3.8e-09 Score=92.19 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=83.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|+.++|+..+++++...|++..++.++|.++...|++++|++.+++++.++|++ ..++..++.++..+|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667777777777777777777777777777777777777777777777777765 3556677777777777777777777
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++...|+.. .. ..++..+...| ++++|+..|++.+..
T Consensus 274 ~~~~~~p~~~----~~--~~la~~~~~~g-~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 274 RALEEYPGAD----LL--LALAQLLEEQE-GPEAAQALLREQLRR 311 (389)
T ss_pred HHHHhCCCch----HH--HHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 7777766532 11 34677777777 778888777777765
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=2.3e-09 Score=103.12 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=85.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++++..++++.+.+|..+.++..+|..+...|++++|++.++++++++|+++.++..++.++..+|++++|+..+++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++...|+++ . +-.+|.++...| ++++|+..|++.+...
T Consensus 109 ~l~~~P~~~---~---~~~la~~l~~~g-~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 109 LVSGAPDKA---N---LLALAYVYKRAG-RHWDELRAMTQALPRA 146 (765)
T ss_pred HHHhCCCCH---H---HHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 777776642 2 223666666776 7777777777777764
No 43
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.13 E-value=2.9e-09 Score=89.88 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=108.9
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.+..+....+.+-..|.+.+++..+|-.+...|+|.+|+..+++|..++|+|+.++..+|-+|...||+++|...|.+
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHH
Confidence 67778888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++.|+.|. .-+ ++|..++-.| +++.|.+++..+....
T Consensus 160 Al~L~~~~p~---~~n--Nlgms~~L~g-d~~~A~~lll~a~l~~ 198 (257)
T COG5010 160 ALELAPNEPS---IAN--NLGMSLLLRG-DLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHhccCCch---hhh--hHHHHHHHcC-CHHHHHHHHHHHHhCC
Confidence 9999999875 223 4899888888 9999999998888764
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.12 E-value=2.3e-10 Score=76.30 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
++|..+.+.|++++|++.++++++.+|+++.++..+|.++..+|++++|+..+++++...|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999999999999999999999999999999999985
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=4.6e-09 Score=86.17 Aligned_cols=123 Identities=11% Similarity=0.039 Sum_probs=107.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHhc-----
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHD----- 69 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~~----- 69 (192)
.|++.+|...+++++..+|+++ .++..+|.++...|++++|+..++++++..|+++. ++..+|.++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 4889999999999999999876 57789999999999999999999999999999887 788999999876
Q ss_pred ---CCHHHHHHHHHHhHhhccCCCCcchhhh--------------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 ---CCFKEAVQFMEECSSTWSSCSSFMYTHN--------------WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 ---Gr~~eai~~~~~a~~~~p~~~~~~~~h~--------------~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++..+|.+.. .... .+.+|.+++..| ++++|+..|++.+...
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEY--APDAKKRMDYLRNRLAGKELYVARFYLKRG-AYVAAINRFETVVENY 196 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHC
Confidence 8999999999999999999642 1111 134788889998 9999999999999874
No 46
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=2.1e-09 Score=84.57 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=91.6
Q ss_pred hHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQE--DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~--~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
+..+.+.+...+...+.+ .+.+..+|..+..+|++++|+..+++|+.+.|+ .+.++.++|.++..+|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566666666666655 688899999999999999999999999999877 457999999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHH-------hCCCCHHHHHHHHHHhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYL-------EGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l-------~~G~~~deAl~~yd~~i~ 124 (192)
+++++.+.|... ..++ ++|.++. .+| ++++|+..|++++.
T Consensus 95 ~~~Al~~~~~~~---~~~~--~la~i~~~~~~~~~~~g-~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLP---QALN--NMAVICHYRGEQAIEQG-DSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcH---HHHH--HHHHHHHHhhHHHHHcc-cHHHHHHHHHHHHH
Confidence 999999988753 3343 3565555 888 88877666665543
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=1.2e-09 Score=105.11 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+|+..+++++..+|+++.++..++.++.+.|++++|+..++++++++|+++. +..+|.++..+|++++|+..++
T Consensus 62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
+++...|+.+ ..+. .+|.++...| +.++|++.+++...
T Consensus 141 ~al~~~P~~~---~~~~--~la~~l~~~~-~~e~Al~~l~~~~~ 178 (765)
T PRK10049 141 QALPRAPQTQ---QYPT--EYVQALRNNR-LSAPALGAIDDANL 178 (765)
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHCC-ChHHHHHHHHhCCC
Confidence 9999999964 3343 4788887777 89999999986554
No 48
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.2e-09 Score=93.95 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl 103 (192)
-+=+-|.-+++.++|.+|...+.+||+|+|+|+--+-+.|-++...|..+.||..++.++.++|.+. . .|--+++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys---k--ay~RLG~ 157 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS---K--AYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH---H--HHHHHHH
Confidence 3445677889999999999999999999999999999999999999999999999999999998842 2 4445999
Q ss_pred HHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHHHHHHHHhhccCCCCcCc-cCC
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIPSIFF-PLK 182 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~~~~~~~~f~-~~~ 182 (192)
+++.+| +|++|++.|.+++..+ |.+ .....-+..+....+..- .+..+.+=.+++.....-.+..++|+ +|.
T Consensus 158 A~~~~g-k~~~A~~aykKaLeld--P~N-e~~K~nL~~Ae~~l~e~~---~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l~ 230 (304)
T KOG0553|consen 158 AYLALG-KYEEAIEAYKKALELD--PDN-ESYKSNLKIAEQKLNEPK---SSAQASGSFDMAGLIGAFPDSRSMFNGDLM 230 (304)
T ss_pred HHHccC-cHHHHHHHHHhhhccC--CCc-HHHHHHHHHHHHHhcCCC---cccccccchhhhhhccCCccchhhhccccc
Confidence 999999 9999999999999886 533 233333566665555443 12345555566665555578889997 888
Q ss_pred Ccchhh
Q 029491 183 NFSKLF 188 (192)
Q Consensus 183 ~~~~~~ 188 (192)
|+.-|-
T Consensus 231 nnp~l~ 236 (304)
T KOG0553|consen 231 NNPQLM 236 (304)
T ss_pred cCHHHH
Confidence 877654
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=2.4e-09 Score=87.83 Aligned_cols=120 Identities=8% Similarity=0.015 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHhcccCCCHHHH----------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLEL--------GQMSDAEEAAKKGLKINKHDCWSQ---------- 59 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~---~~~~laf~L~e~--------g~~~eAe~~~rrALaL~P~da~A~---------- 59 (192)
.|++++|+..+++++...|+++. ++.++|.++.+. |++++|.+.+++++..+|++..+.
T Consensus 83 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~ 162 (235)
T TIGR03302 83 SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR 162 (235)
T ss_pred cCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 48999999999999999998875 788899998876 889999999999999999998664
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhh
Q 029491 60 -------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (192)
Q Consensus 60 -------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i 123 (192)
.++|-++..+|++++|+..+++++...|+.+. ..-.++.++.++..+| ++++|...++...
T Consensus 163 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~a~~~l~~~~~~lg-~~~~A~~~~~~l~ 230 (235)
T TIGR03302 163 NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA--TEEALARLVEAYLKLG-LKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 25677889999999999999999999998654 3446667999999999 9999999876544
No 50
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=2.4e-09 Score=71.49 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl 103 (192)
++..+|..+...|++++|+..+++++.++|++..++..+|.++..+|++++|+..+++++...|..+. .++.+|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK-----AYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-----HHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999888542 4556999
Q ss_pred HHHhCCCCHHHHHHHHHHhhhh
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...| ++++|...+++.+..
T Consensus 77 ~~~~~~-~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLG-KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHH-hHHHHHHHHHHHHcc
Confidence 999998 899999999887754
No 51
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=3.1e-09 Score=93.95 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHH
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 106 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l 106 (192)
..|..+...|+|++|++.+++||+++|+++.++.++|.++..+|++++|+..+++++.+.|.++ .+ +..+|.+++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a--~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KA--YLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HH--HHHHHHHHH
Confidence 4466778899999999999999999999999999999999999999999999999999999853 33 345999999
Q ss_pred hCCCCHHHHHHHHHHhhhhh
Q 029491 107 EGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 107 ~~G~~~deAl~~yd~~i~~~ 126 (192)
.+| +|++|+..|++++...
T Consensus 82 ~lg-~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 82 KLE-EYQTAKAALEKGASLA 100 (356)
T ss_pred HhC-CHHHHHHHHHHHHHhC
Confidence 999 9999999999999885
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=5.9e-09 Score=86.99 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=123.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
.|+.+.|.+.+++|+.++|++..+++++|.-|+.+|++++|...+++|++. =|.-+..+-|+|.+-..+|+++.|...
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 488899999999999999999999999999999999999999999999984 256778999999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFG 158 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~ 158 (192)
++++++++|+.++ ..--+|-.+++.| +|-.|...+++.-... + . ..+..=|.||+.-.=.+.+..
T Consensus 162 l~raL~~dp~~~~-----~~l~~a~~~~~~~-~y~~Ar~~~~~~~~~~----~-~----~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 162 LKRALELDPQFPP-----ALLELARLHYKAG-DYAPARLYLERYQQRG----G-A----QAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHhCcCCCh-----HHHHHHHHHHhcc-cchHHHHHHHHHHhcc----c-c----cHHHHHHHHHHHHHhccHHHH
Confidence 9999999999775 2223888889998 9999999998876653 1 1 223334556666554444556
Q ss_pred chHHHHHHH
Q 029491 159 NRLKVLADC 167 (192)
Q Consensus 159 ~rw~~l~~~ 167 (192)
.||+.....
T Consensus 227 ~~Y~~qL~r 235 (250)
T COG3063 227 QRYQAQLQR 235 (250)
T ss_pred HHHHHHHHH
Confidence 677665544
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.03 E-value=6.8e-09 Score=90.59 Aligned_cols=119 Identities=14% Similarity=0.088 Sum_probs=62.0
Q ss_pred CChHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
|++++|+..+.+++...|.+. .++..+|..+.++|++++|+..++++++++|++..++..+|.++..+|++++|+
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554444331 233445555555556666666666666555655555555666666666666666
Q ss_pred HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
..++++....|.... . .+-.++.++...| ++++|...+++.+..
T Consensus 235 ~~~~~~~~~~p~~~~--~--~~~~l~~~~~~~g-~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 235 EALERVEEQDPEYLS--E--VLPKLMECYQALG-DEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHChhhHH--H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 666655555444211 1 1112455555555 556666655555544
No 54
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.02 E-value=3.2e-09 Score=70.93 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+++..+++++...|.++.++..+|.++...|++++|+..+++++.++|.+..++..++.++..+|+.++|...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcc
Q 029491 81 ECSSTWS 87 (192)
Q Consensus 81 ~a~~~~p 87 (192)
++++..|
T Consensus 93 ~~~~~~~ 99 (100)
T cd00189 93 KALELDP 99 (100)
T ss_pred HHHccCC
Confidence 9998766
No 55
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.01 E-value=3.9e-09 Score=97.77 Aligned_cols=117 Identities=10% Similarity=-0.039 Sum_probs=101.2
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHhcCCH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL--------GQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCF 72 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~--------g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~~Gr~ 72 (192)
....+++.+++|++.+|++++++..+++++... .+.+++.+.+++++++ +|.++.++.++|.+...+|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 366899999999999999999999998877554 2356677888888775 888999999999999999999
Q ss_pred HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++|.+.+++++.++|. . .+|+. +|.++...| ++++|.+.|++++..+
T Consensus 437 ~~A~~~l~rAl~L~ps-~---~a~~~--lG~~~~~~G-~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 437 DEAYQAINKAIDLEMS-W---LNYVL--LGKVYELKG-DNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHHcCCC-H---HHHHH--HHHHHHHcC-CHHHHHHHHHHHHhcC
Confidence 9999999999999984 2 45665 899998998 9999999999999885
No 56
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=3.1e-09 Score=84.10 Aligned_cols=87 Identities=8% Similarity=-0.103 Sum_probs=83.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++|...++-++..+|.++..+..+|.++...|+|++|+..+.+|+.|+|+||.++.+.|.++...|+.++|...++
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcc
Q 029491 81 ECSSTWS 87 (192)
Q Consensus 81 ~a~~~~p 87 (192)
.++..-.
T Consensus 128 ~Ai~~~~ 134 (157)
T PRK15363 128 AVVRICG 134 (157)
T ss_pred HHHHHhc
Confidence 9997753
No 57
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=6.5e-09 Score=75.40 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh 100 (192)
.+...|..+.+.|++++|++.+++++..+|++ +.+...+|-++...|++++|+..+++++...|+.+. ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK--APDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc--ccHHHHH
Confidence 45667777888888888888888888888876 567788888888888888888888888888877542 1234455
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+|.++...| ++++|...|++.+..
T Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELG-DKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHHH
Confidence 788888887 788888888887764
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.9e-09 Score=94.16 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=110.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++++.|...++||+.++|.+..++...|.-++|+.....|.+.+|+|+.+||.|--||..+|.++...+=|.=|+-++++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|...-|.++. .|--+|.+|..++ +.++|++.|.+++...
T Consensus 424 A~~~kPnDsR-----lw~aLG~CY~kl~-~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 424 ALELKPNDSR-----LWVALGECYEKLN-RLEEAIKCYKRAILLG 462 (559)
T ss_pred HHhcCCCchH-----HHHHHHHHHHHhc-cHHHHHHHHHHHHhcc
Confidence 9999999753 5556999999998 9999999999999874
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.97 E-value=3.7e-08 Score=77.95 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=90.8
Q ss_pred HHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 6 LCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 6 ~al~~~~ral~~~p--~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
-+-+.+.+.++.++ ..+.++..+|..+...|++++|...+++++.++|+. +.+++.+|.++...|++++|+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 17 VMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666777654 557788999999999999999999999999998874 5799999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCC--------------HHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSP--------------MRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~--------------~deAl~~yd~~i~~ 125 (192)
++++..|... ..+ ..+|.++...| + +++|++++++.+..
T Consensus 97 ~al~~~p~~~---~~~--~~lg~~~~~~g-~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 97 QALELNPKQP---SAL--NNIAVIYHKRG-EKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHhCcccH---HHH--HHHHHHHHHcC-ChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988853 333 35888887776 5 45566666655554
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6e-09 Score=94.67 Aligned_cols=137 Identities=15% Similarity=0.235 Sum_probs=116.3
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
+..++...+..|..++|+++.++.-.|-++.-.++|++|.+-+++|++|+|.++.++..+|-+++.++++++....++.+
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCC---CCChHHHHHHHHHHHH
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPD---AVHPEVYLNALGLLLR 147 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~---~~~~~~~~da~sLL~R 147 (192)
....|.++. +.+. .|..+.+.+ +++.|++.||.+|..+ |.. -+.+..+|.-+-|+.|
T Consensus 455 kkkFP~~~E---vy~~--fAeiLtDqq-qFd~A~k~YD~ai~LE--~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 455 KKKFPNCPE---VYNL--FAEILTDQQ-QFDKAVKQYDKAIELE--PREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHhCCCCch---HHHH--HHHHHhhHH-hHHHHHHHHHHHHhhc--cccccccccchhhhhhhHhhhc
Confidence 999999975 3444 788888998 9999999999999885 430 1122335555555544
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=2.5e-08 Score=72.28 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=83.8
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~e 74 (192)
.|++++|...+.+++..+|++ +.++..+|.++.+.|++++|...+++++.++|++ ++++..+|.++..+|+.++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence 488999999999999998877 5688899999999999999999999999999986 7899999999999999999
Q ss_pred HHHHHHHhHhhccCCC
Q 029491 75 AVQFMEECSSTWSSCS 90 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~ 90 (192)
|+..+++++...|+++
T Consensus 95 A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 95 AKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHHCcCCh
Confidence 9999999999999854
No 62
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=3.7e-09 Score=98.28 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=108.7
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
.++.|..+++.||..+|++--++.-+|.++..+++++.|+-.+++|+.+||.+....-.+|-+++..|+.++|+..|++|
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.-++|.++ +--.|.|..+..++ +|++|+..+|.....
T Consensus 550 ~~ld~kn~-----l~~~~~~~il~~~~-~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 550 IHLDPKNP-----LCKYHRASILFSLG-RYVEALQELEELKEL 586 (638)
T ss_pred HhcCCCCc-----hhHHHHHHHHHhhc-chHHHHHHHHHHHHh
Confidence 99999964 24457999999999 999999999987655
No 63
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.94 E-value=4.1e-09 Score=95.30 Aligned_cols=69 Identities=14% Similarity=0.004 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
.+|+++.++.++|.+|.+.|+|++|++.+++||+++|+++. ++.++|-++..+|+.+||++.+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999995 5999999999999999999999999997
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1e-08 Score=88.59 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=97.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rr----ALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
.|+.++++..+++++..+|++..++.+ ++.+...|++..+...+.+ ....+|++.++...+|.++..+|++++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 488999999999999999999988776 6666555554444444444 44788889999999999999999999999
Q ss_pred HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+++++...|+++ . ....+|.++++.| ++++|...+++.+...
T Consensus 135 ~~~~~al~~~p~~~---~--~~~~la~i~~~~g-~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 135 EAARRALELNPDDA---W--AVHAVAHVLEMQG-RFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHHHhhCCCCc---H--HHHHHHHHHHHcC-CHHHHHHHHHhhhhcc
Confidence 99999999999964 2 2334899999998 9999999999988763
No 65
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=6e-08 Score=87.91 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=124.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++++...+..+...|+++|+..+.+-++.+.|+..+|.+.+++++++.|+.++...++|.+|...|+++|||..+.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHH-HHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhc
Q 029491 81 ECSSTWSSCSSFMYTHNWW-HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~W-hlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~ 159 (192)
+.+...|+++. +| -+|.++-++| +..++...+-...... + .+-.+..++-|..-...- -..
T Consensus 399 ~~~~~~p~dp~------~w~~LAqay~~~g-~~~~a~~A~AE~~~~~----G-----~~~~A~~~l~~A~~~~~~--~~~ 460 (484)
T COG4783 399 RYLFNDPEDPN------GWDLLAQAYAELG-NRAEALLARAEGYALA----G-----RLEQAIIFLMRASQQVKL--GFP 460 (484)
T ss_pred HHhhcCCCCch------HHHHHHHHHHHhC-chHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHhccC--CcH
Confidence 99999999763 34 4899998998 8899998888777763 1 244555556555443321 234
Q ss_pred hHHHHHHHHh
Q 029491 160 RLKVLADCVA 169 (192)
Q Consensus 160 rw~~l~~~~~ 169 (192)
.|.++-+...
T Consensus 461 ~~aR~dari~ 470 (484)
T COG4783 461 DWARADARID 470 (484)
T ss_pred HHHHHHHHHH
Confidence 5665554443
No 66
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.90 E-value=9.9e-09 Score=95.09 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 5 DLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 5 ~~al~~~~ral~--~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
+.+.+.+++++. .+|.++.+|..+|......|++++|++.++||+++|| ++.++..+|.+++.+|++++|++.+++|
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666777555 5888899999999999999999999999999999999 5899999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++++|..|. .++|+-..+|- +.+...-...+.+.+
T Consensus 480 ~~L~P~~pt----~~~~~~~~f~~----~~~~~~~~~~~~~~~ 514 (517)
T PRK10153 480 FNLRPGENT----LYWIENLVFQT----SVETVVPYLYRFLAP 514 (517)
T ss_pred HhcCCCCch----HHHHHhccccc----cHHHHHHHHHhccCc
Confidence 999999764 25555555542 444544444444443
No 67
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=9.1e-08 Score=73.75 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=95.3
Q ss_pred CChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA 75 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~ea 75 (192)
|+...+...+++.+..+|+. ..+...+|-.+.+.|++++|.+.+++++.-.|++ +.+...++.++..+|++++|
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 56677777788888888888 4566778899999999999999999999988776 46888899999999999999
Q ss_pred HHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhh
Q 029491 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (192)
Q Consensus 76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i 123 (192)
+..++... . +++ ....+.-.|.+++..| ++++|...|+++|
T Consensus 105 l~~L~~~~-~----~~~-~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQIP-D----EAF-KALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhcc-C----cch-HHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 99997632 1 122 3445667999999999 9999999999875
No 68
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=5.8e-09 Score=73.13 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=67.7
Q ss_pred HcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 029491 34 ELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (192)
Q Consensus 34 e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~ 111 (192)
++|+|++|+..+++.++.+|. +...+..+|.++..+|++++|+..+++ ....|.+. . ..+-+|.+++.+| +
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---~--~~~l~a~~~~~l~-~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---D--IHYLLARCLLKLG-K 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---H--HHHHHHHHHHHTT--
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---H--HHHHHHHHHHHhC-C
Confidence 478999999999999999996 466777789999999999999999999 76766531 3 4456899999999 9
Q ss_pred HHHHHHHHHHh
Q 029491 112 MRKVLEIYDNH 122 (192)
Q Consensus 112 ~deAl~~yd~~ 122 (192)
|++|+..|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999763
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.87 E-value=2.9e-08 Score=88.86 Aligned_cols=119 Identities=14% Similarity=0.032 Sum_probs=101.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH--HHHHHHHHHHHhcCCHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFI--FGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~--~~~laf~L~e~g~~~eAe~~~rrALaL~P~da--~A~h~lahvl~~~Gr~~eai 76 (192)
.|+.++|+..+++++...|++... ..+........++.+.+++.++++++.+|+|+ ....++|.++..+|++++|.
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 489999999999999999988743 24455555567889999999999999999999 99999999999999999999
Q ss_pred HHHH--HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 77 QFME--ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 77 ~~~~--~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+++ ++....|+. . ...|+|..+..+| +.++|.++|++.+.+-
T Consensus 356 ~~le~a~a~~~~p~~----~--~~~~La~ll~~~g-~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 356 DAFKNVAACKEQLDA----N--DLAMAADAFDQAG-DKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHhHHhhcCCCH----H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence 9999 577777763 2 3448999999999 8999999999987763
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=2.6e-08 Score=78.32 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH-------hcC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-------HDC 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~---~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~-------~~G 70 (192)
+|++++|+..+++++...|+ .+.++.++|.++...|++++|++.+++|+.++|..+.++.++|.++. .+|
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 48999999999999988665 46799999999999999999999999999999999999999999999 666
Q ss_pred CHHHHHHHHH
Q 029491 71 CFKEAVQFME 80 (192)
Q Consensus 71 r~~eai~~~~ 80 (192)
++++|+..++
T Consensus 128 ~~~~A~~~~~ 137 (168)
T CHL00033 128 DSEIAEAWFD 137 (168)
T ss_pred cHHHHHHHHH
Confidence 6664443333
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=93.41 Aligned_cols=116 Identities=8% Similarity=0.033 Sum_probs=103.8
Q ss_pred HHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 5 DLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 5 ~~al~~~~ral~~~p--~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
......+..+....| .|+.++..||..+.-.|+|++|..+++.||..+|+|.-.|.-||-++.-..|.+|||..|.+|
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 344556666666778 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+.+.|.. .+ .+.++|++++-+| .|.||+..|=.+|.-.
T Consensus 491 LqLqP~y---VR--~RyNlgIS~mNlG-~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 491 LQLQPGY---VR--VRYNLGISCMNLG-AYKEAVKHLLEALSMQ 528 (579)
T ss_pred HhcCCCe---ee--eehhhhhhhhhhh-hHHHHHHHHHHHHHhh
Confidence 9999874 34 5556999999999 8999999999998875
No 72
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=6.3e-08 Score=84.77 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=101.7
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~--~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+..++++.+.+++..+|.+..++...+.++...|+. +++.+...++|+++|+|..|+..++.++...|+.++++.+++
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 468999999999999999999999999999999974 778999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhC---CCCH----HHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPM----RKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~---G~~~----deAl~~yd~~i~~~ 126 (192)
++++.+|++++ .|.|.+.....+ | .+ ++.+..++++|...
T Consensus 167 ~~I~~d~~N~s-----AW~~R~~vl~~~~~l~-~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 167 QLLEEDVRNNS-----AWNQRYFVITRSPLLG-GLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHHHCCCchh-----HHHHHHHHHHhccccc-cccccHHHHHHHHHHHHHhC
Confidence 99999999654 566677665443 3 23 46787778888764
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.81 E-value=1.2e-08 Score=67.91 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da 56 (192)
.|++++|+..+++++..+|+++.++..+|.++..+|++++|++.++++++++|+||
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 48899999999999999999999999999999999999999999999999999986
No 74
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.81 E-value=1.5e-07 Score=71.46 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
|.++..+|.++-..|+.++|+..+++|++..+.. ..+...+|.++...|++++|+..+++.+...|+++. ..-..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHH
Confidence 3467889999999999999999999999986655 568899999999999999999999999999888432 22223
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
-.+|+++...| +.+||++++-..+.+.
T Consensus 79 ~f~Al~L~~~g-r~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 79 VFLALALYNLG-RPKEALEWLLEALAET 105 (120)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 34889999999 9999999998888763
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-07 Score=89.58 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=110.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH--HH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ--FM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~--~~ 79 (192)
|..+++..++..+-..+|..++.+.+.|..++..|...||.+.+.-|+.+||+++...+++|-++...|+..=+.. ++
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999999999999999999999988888 99
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+++++|.++. .|..+|-.+..+| +.++|...|+.++..+
T Consensus 744 ~dalr~dp~n~e-----aW~~LG~v~k~~G-d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 744 SDALRLDPLNHE-----AWYYLGEVFKKLG-DSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhhCCCCHH-----HHHHHHHHHHHcc-chHHHHHHHHHHHhhc
Confidence 999999999753 6668999999999 8999999999999986
No 76
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.7e-07 Score=84.88 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|.+...|.++++||+..+|.|--++.-+|-+++-++-+.-|.=.+++|+++.|+|+-.+.+||.++...++.+|||..|.
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++....... ...|-+|-.|-+++ ++++|...|++-|...
T Consensus 457 rai~~~dte~-----~~l~~LakLye~l~-d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 457 RAILLGDTEG-----SALVRLAKLYEELK-DLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHhccccch-----HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 9998865532 36678999999998 8999999999999864
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.70 E-value=1.3e-07 Score=74.76 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC------ 71 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr------ 71 (192)
.|++++|...+++++...|+. +.++..+|.++...|++++|++.+++++.++|+++.++..+|.++...|+
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence 489999999999999876653 57899999999999999999999999999999999999999999999988
Q ss_pred --------HHHHHHHHHHhHhhccC
Q 029491 72 --------FKEAVQFMEECSSTWSS 88 (192)
Q Consensus 72 --------~~eai~~~~~a~~~~p~ 88 (192)
+++|++.+++++...|+
T Consensus 128 ~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 128 DQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCch
Confidence 45566666666666555
No 78
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.70 E-value=4.5e-07 Score=88.22 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=91.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++|+..+++++.-.|...+.+..+|..+...|++++|++.++++++++|+++.++..++.++...|+.++|+..+++
T Consensus 82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 82 GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 77788888888888333444444444477888999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHh--CCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~--~G~~~deAl~~yd~~i~~~ 126 (192)
+.+..|... . -+++.++. .+ ++.+|++.|++.+...
T Consensus 162 l~~~dp~~~------~--~l~layL~~~~~-~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 162 LAERDPTVQ------N--YMTLSYLNRATD-RNYDALQASSEAVRLA 199 (822)
T ss_pred hcccCcchH------H--HHHHHHHHHhcc-hHHHHHHHHHHHHHhC
Confidence 998887721 1 15555555 34 4656999999999885
No 79
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1e-06 Score=75.82 Aligned_cols=138 Identities=11% Similarity=-0.005 Sum_probs=112.9
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC---FKEAVQFME 80 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr---~~eai~~~~ 80 (192)
.++.....+..+..+|+|+.-+-++|-+++.+|+++.|+..|++|+.|.|+++...-.+|.++..+.. ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34566677888889999999999999999999999999999999999999999999999999998875 578999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (192)
+++.++|.+. . ..|-+|..+++.| +|.+|+...+..+... | ...+-..++..+-..-+...
T Consensus 218 ~al~~D~~~i---r--al~lLA~~afe~g-~~~~A~~~Wq~lL~~l--p-~~~~rr~~ie~~ia~~~~~~ 278 (287)
T COG4235 218 QALALDPANI---R--ALSLLAFAAFEQG-DYAEAAAAWQMLLDLL--P-ADDPRRSLIERSIARALAQR 278 (287)
T ss_pred HHHhcCCccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhcC--C-CCCchHHHHHHHHHHHHhcc
Confidence 9999999963 3 4445999999999 9999999999988774 3 22233445555444444333
No 80
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.68 E-value=6.7e-08 Score=65.37 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=57.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.-++...+++++|++.+++++.++|+++.++..+|-++..+|++++|+..+++++...|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34678899999999999999999999999999999999999999999999999999998753
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=6.9e-07 Score=76.26 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=91.0
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 22 DFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 22 ~~~~~~laf~L-~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
.......|+.+ ...|+|++|...+++.+...|++ +.++..+|-+++.+|++++|+..+++.+..+|+++. ....
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~--~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK--AADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhHH
Confidence 35566777777 56799999999999999999999 579999999999999999999999999999999764 5667
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+.+|.++..+| ++++|.+.|++.|...
T Consensus 220 l~klg~~~~~~g-~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKG-DTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 778999999998 9999999999998875
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.67 E-value=4.6e-08 Score=68.53 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
.|++..|+..+++++...|. +..++..+|.++...|+|++|...+++ +..+|.++..+.-+|.++..+|+++||+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 37899999999999999985 455666699999999999999999999 999999999999999999999999999999
Q ss_pred HHHh
Q 029491 79 MEEC 82 (192)
Q Consensus 79 ~~~a 82 (192)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.5e-07 Score=85.30 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=101.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----ccCCCH-H--HHHHHHHHHHhcCCHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK----INKHDC-W--SQHALCHVLQHDCCFKE 74 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa----L~P~da-~--A~h~lahvl~~~Gr~~e 74 (192)
+...-|-..+.+|+.+.|.||.++.-+|.+--+.+.|.+|...++.+|+ ..+..+ | .+.++||++..+++.+|
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 4556677788889999999999999999888888999999999999983 333332 2 37899999999999999
Q ss_pred HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
||..+++++.+.|.+. ..|.. +|..|..+| ++|.|+..|.++++..
T Consensus 474 AI~~~q~aL~l~~k~~---~~~as--ig~iy~llg-nld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDA---STHAS--IGYIYHLLG-NLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHcCCCch---hHHHH--HHHHHHHhc-ChHHHHHHHHHHHhcC
Confidence 9999999999999965 57777 999999999 9999999999999985
No 84
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.65 E-value=8e-08 Score=64.11 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=53.8
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
|.+.|++++|++.+++++..+|+++.+...++.++..+|++++|...+++.+...|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4688999999999999999999999999999999999999999999999999998884
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.61 E-value=6.6e-07 Score=87.06 Aligned_cols=118 Identities=5% Similarity=-0.060 Sum_probs=101.4
Q ss_pred CChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|++.+|++.+++++..+|.++ .++ .+...+...|++++|+..+++++.-+|....+.-++|.++..+|++++|++.++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999995 444 777778888999999999999995555666666666889999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++..|+++. ..-.++..+.+.| ++++|+..+++.+...
T Consensus 127 kaL~~dP~n~~-----~l~gLa~~y~~~~-q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 127 SSLKKDPTNPD-----LISGMIMTQADAG-RGGVVLKQATELAERD 166 (822)
T ss_pred HHHhhCCCCHH-----HHHHHHHHHhhcC-CHHHHHHHHHHhcccC
Confidence 99999999754 2235889999998 9999999999888764
No 86
>PRK15331 chaperone protein SicA; Provisional
Probab=98.60 E-value=5.7e-07 Score=71.70 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
-....-+|+-+...|++++|+..++-...++|.++.=+..||-|++.++++++|+..|..+.-+.+++|. ...|.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~-----p~f~a 111 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR-----PVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-----ccchH
Confidence 3455566778899999999999999999999999999999999999999999999999999999888764 23469
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 102 ALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 102 Al~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|.+++.+| +.++|...|..++..
T Consensus 112 gqC~l~l~-~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMR-KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHhC
Confidence 99999999 999999999999986
No 87
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.58 E-value=9.2e-07 Score=67.12 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhcCCHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---da~A~h~lahvl~~~Gr~~e 74 (192)
+|+.++|+..+++++....+. ..++..+|.++...|++++|+...++++.-.|+ +......++.++...||++|
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 599999999999999975433 568888999999999999999999999999899 88888899999999999999
Q ss_pred HHHHHHHhHh
Q 029491 75 AVQFMEECSS 84 (192)
Q Consensus 75 ai~~~~~a~~ 84 (192)
|+.++-.++.
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987774
No 88
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=5.4e-06 Score=74.28 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=104.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|++..|+..+.++....|+....+-..|-+..++|++++|.+.+.++.+..|++. .+.-+.+.++..+|++++|++.++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8999999999999999888877777889999999999999999999999999986 466667999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++.+..|+++. .... ++..++..| +++++.+.+++....
T Consensus 178 ~l~~~~P~~~~---~l~l--l~~~~~~~~-d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 178 KLLEMAPRHKE---VLKL--AEEAYIRSG-AWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHhCCCCHH---HHHH--HHHHHHHHh-hHHHHHHHHHHHHHc
Confidence 99999999753 3333 888899998 999999999887765
No 89
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.56 E-value=1.2e-06 Score=78.23 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++|...+++++.. |.++.....++. ...++.+++.+.+++.++.+|+|+..+.++|.++..+|++++|.+.++
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48889999999999994 445544444443 345999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++...|+.. .+.. +|.++-..| +.++|..+|.+.+..
T Consensus 353 ~al~~~P~~~----~~~~--La~~~~~~g-~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 353 AALKQRPDAY----DYAW--LADALDRLH-KPEEAAAMRRDGLML 390 (398)
T ss_pred HHHhcCCCHH----HHHH--HHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 9999988842 3333 888888898 899999999998765
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.56 E-value=8e-08 Score=64.38 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINK 53 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P 53 (192)
.|++++|+..+.+++..+|+++.++.++|.++.+.| ++++|++.+++|++++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 488999999999999999999999999999999999 79999999999999998
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3e-07 Score=84.77 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=85.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+++++.++++.||...|.|.-.++-||-+|.-..+.+||+.+|+|||.|.|+..-+..+||-.+.-+|.++||+.++-+
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCC
Q 029491 82 CSSTWSSC 89 (192)
Q Consensus 82 a~~~~p~~ 89 (192)
++.+.+..
T Consensus 524 AL~mq~ks 531 (579)
T KOG1125|consen 524 ALSMQRKS 531 (579)
T ss_pred HHHhhhcc
Confidence 99888774
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.50 E-value=5e-07 Score=81.90 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=64.4
Q ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 51 L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
-+|++++++.++|.++..+|+++||++.+++++.++|++.. ....+.++|.+|..+| ++++|++.|+++|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae--A~~A~yNLAcaya~LG-r~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE--AQAAYYNKACCHAYRE-EGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999642 1134567999999999 999999999999986
No 93
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.50 E-value=5.2e-07 Score=60.94 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=58.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la 63 (192)
+++++++..+++++..+|+++.++..+|.++..+|++++|.+.++++++++|+++.+.-..+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998766544
No 94
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.50 E-value=3.3e-06 Score=65.58 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA 102 (192)
-.+-..|.++.|.|+++.|++.+.+||.+.|..+.++.+.+.++-.+|+.++|++-+++++++..+... -.+|.+-..|
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr-tacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR-TACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch-HHHHHHHHHH
Confidence 445677889999999999999999999999999999999999999999999999999999988655332 2566666799
Q ss_pred HHHHhCCCCHHHHHHHHHHhhhh
Q 029491 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 103 l~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+.|-.+| +-|.|.+-|+.+-..
T Consensus 123 ~lyRl~g-~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 123 LLYRLLG-NDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHhC-chHHHHHhHHHHHHh
Confidence 9998888 889999999988776
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.49 E-value=2.7e-07 Score=61.48 Aligned_cols=64 Identities=25% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
.|++++|+..+++++..+|+++.+...+|.++.+.|++++|++..++++..+|+++..+..++-
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4889999999999999999999999999999999999999999999999999999877766653
No 96
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=2.2e-07 Score=63.84 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
|+-+.++..+|.++.++|++++|+..+++|+.+. |.-+.+++++|.++..+|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445677888888888888888888888888763 334677888888888888888888888888765
No 97
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.47 E-value=3.6e-07 Score=56.83 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
|.++.++|.++.+.|++++|++.++++|+++|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577899999999999999999999999999999999999875
No 98
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=8.7e-07 Score=77.78 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=124.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
.+...|+-.+...+...|.+...+.-.|-++++++++++|.+.+++++.++|.+..+...+|..+++.|+++=|+.+|++
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 35678889999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHH------------HHHHHHHHHhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY------------LNALGLLLRVY 149 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~------------~da~sLL~Rl~ 149 (192)
-+..-..+|. ..-++|++.+-.+ ++|-++..|.+++..-..+. .-++.. .+.+.--|||.
T Consensus 350 iLqmG~~spe-----Lf~NigLCC~yaq-Q~D~~L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 350 ILQMGAQSPE-----LFCNIGLCCLYAQ-QIDLVLPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHhcCCChH-----HHhhHHHHHHhhc-chhhhHHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 9988766543 3446999999987 99999999999998742111 111110 25566678888
Q ss_pred hcCcccchhchHHHHH
Q 029491 150 VRGELDVFGNRLKVLA 165 (192)
Q Consensus 150 l~g~~~~~~~rw~~l~ 165 (192)
+.... +-++-...|+
T Consensus 422 L~~d~-~h~ealnNLa 436 (478)
T KOG1129|consen 422 LTSDA-QHGEALNNLA 436 (478)
T ss_pred hccCc-chHHHHHhHH
Confidence 87654 3455554444
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.41 E-value=5.8e-06 Score=77.39 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=98.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
||+..+|.+.+++++..++....-+-.+|.......+|++|+.+++.||.+.|+|-..+..++......|+.+--...-.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 46667777777777776666666666666666667777777777777777777777777777777766666666555555
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcC
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRG 152 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g 152 (192)
+-+.+.|... -+|--.|+++...| +|..|..+.+.-+.... .+++..++.-.-++|+|-...-
T Consensus 134 ~LLql~~~~r-----a~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 134 QLLQLRPSQR-----ASWIGFAVAQHLLG-EYKMALEILEEFEKTQN---TSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HHHHhhhhhH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHH
Confidence 5555554421 14557899998888 99999999988776631 2345567777778888866543
No 100
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.40 E-value=2.7e-06 Score=72.60 Aligned_cols=89 Identities=10% Similarity=-0.015 Sum_probs=82.1
Q ss_pred CChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA 75 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~ea 75 (192)
|++++|+..+++.+..+|+++ .++..+|.++...|++++|...+++.+...|++ +.++..+|.++..+|+.++|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 789999999999999999984 699999999999999999999999999988885 67777789999999999999
Q ss_pred HHHHHHhHhhccCCC
Q 029491 76 VQFMEECSSTWSSCS 90 (192)
Q Consensus 76 i~~~~~a~~~~p~~~ 90 (192)
+..+++.++.+|+..
T Consensus 237 ~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 237 KAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHCcCCH
Confidence 999999999999853
No 101
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=7.4e-06 Score=73.76 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=98.2
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++.+.|+..+++....+|+ +...++-++..+++-.+|.+...++|..+|+|+..++..+..+..+++.+.|+...++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6788999999998888876 4556788888899999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd 120 (192)
+....|.. .-.|-.||.+|+.+| ++++|+....
T Consensus 260 av~lsP~~-----f~~W~~La~~Yi~~~-d~e~ALlaLN 292 (395)
T PF09295_consen 260 AVELSPSE-----FETWYQLAECYIQLG-DFENALLALN 292 (395)
T ss_pred HHHhCchh-----HHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 99999984 236668999999999 9999997663
No 102
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.2e-06 Score=72.11 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=83.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
+|+...|...+++|+.+.|+++..++-+|-+|..+. .-.++..++++||+++|+|+-+..-+|....++|++++|+.
T Consensus 169 ~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 169 LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 488999999999999999999999999999886654 45679999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCCC
Q 029491 78 FMEECSSTWSSCSS 91 (192)
Q Consensus 78 ~~~~a~~~~p~~~~ 91 (192)
..+.-++..|.+.+
T Consensus 249 ~Wq~lL~~lp~~~~ 262 (287)
T COG4235 249 AWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHhcCCCCCc
Confidence 99999999888643
No 103
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.34 E-value=3.6e-06 Score=77.85 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah 64 (192)
+|++.+|...+++|+.. +|.-+.++.++|..+...|+|++|+..+++|+.+- |.-+-.+-+++-
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 46788899999998874 45667899999999999999999999999999865 556677889999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
++..++++++++..+.+++.+.-+-++ .+..+..=++|-.++..| +|++|..+|+++|....
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHH
Confidence 999999999999999999976543221 112334446999999999 99999999999999863
No 104
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=3.3e-06 Score=77.17 Aligned_cols=120 Identities=10% Similarity=0.108 Sum_probs=99.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
++++++|..-+++++.++|++.+.+..+++++..++++++++..++.+..-=|+-+....-.|.++..+++|+.|+..|+
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccC------CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSS------CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~------~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.++++-|. +.. ... |.|+..+.=.+++.+|+.+.+++|..
T Consensus 487 ~ai~LE~~~~~~~v~~~-plV----~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAA-PLV----HKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHhhccccccccccch-hhh----hhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 99999998 322 122 34444333112566666666666554
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.32 E-value=1.1e-05 Score=72.04 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=94.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGIL-AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL-CHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~l-af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l-ahvl~~~Gr~~eai~~~ 79 (192)
|++..|.....+.-.. ++.+..+..+ +.+-.+.|++++|.+.+++|.+.+|++..+...+ +.++..+|++++|++.+
T Consensus 98 Gd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888766664333 3345555555 4455899999999999999999999998776544 89999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++.+..|+++. ... .++..++..| ++++|++++++....
T Consensus 177 ~~~~~~~P~~~~---al~--ll~~~~~~~g-dw~~a~~~l~~l~k~ 216 (398)
T PRK10747 177 DKLLEVAPRHPE---VLR--LAEQAYIRTG-AWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHhcCCCCHH---HHH--HHHHHHHHHH-hHHHHHHHHHHHHHc
Confidence 999999999653 333 3888889998 999999999877755
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.7e-06 Score=78.07 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=87.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++..|+..+.+++..+|+|+-++++.|.++...|.+.+|.+-+..+++|||+..-++..-|+++...-+++++++.|+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCC
Q 029491 81 ECSSTWSSCSS 91 (192)
Q Consensus 81 ~a~~~~p~~~~ 91 (192)
+++..+|.+..
T Consensus 451 eale~dp~~~e 461 (539)
T KOG0548|consen 451 EALELDPSNAE 461 (539)
T ss_pred HHHhcCchhHH
Confidence 99999988654
No 107
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.31 E-value=1.7e-05 Score=73.52 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~--------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah 64 (192)
.|++++|...+++|+.+. |+-+..++.++.+++.++++++|+..+++++++- |+-+--..++|.
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 388999999999998752 3446788889999999999999999999999864 344667789999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+.++|+++||.+++++++...-.... ....-.-||+|..+.+++ ++++|-.+|++.+...
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k-~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK-KYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 999999999999999999976532111 012335689999999988 9999999999887664
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.1e-05 Score=68.48 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=96.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+..-|..++.+.-...|.+.-+..+.|.-|+-+|.+++|++.+.+-|+=||+|.-.+-..--++-.+|+.-++|.-+..
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~ 145 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE 145 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55666777777766666899999999999999999999999999999999988888888777788888888888888888
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
-++..+.++ ..||-+|-.|+..| +|+.|.=+|+..+-..
T Consensus 146 YL~~F~~D~-----EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 146 YLDKFMNDQ-----EAWHELAEIYLSEG-DFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHhcCcH-----HHHHHHHHHHHhHh-HHHHHHHHHHHHHHcC
Confidence 888877753 36777888888887 7888888888877653
No 109
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.30 E-value=5.7e-07 Score=53.30 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.6
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 44 AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 44 ~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
++++||+++|+|+.+++++|.++..+|+.++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3689999999999999999999999999999863
No 110
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.28 E-value=1.2e-05 Score=77.38 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC
Q 029491 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~ 111 (192)
+.-.|++++|++++...+..+|.++.++.+||.|++.+|+.++++-+.--|.-++|.+.. .|-++|-...++| .
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e-----~W~~ladls~~~~-~ 222 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE-----LWKRLADLSEQLG-N 222 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH-----HHHHHHHHHHhcc-c
Confidence 344466666666666666666666666666666666666666666666666666655432 4445555555555 5
Q ss_pred HHHHHHHHHHhhhh
Q 029491 112 MRKVLEIYDNHIWK 125 (192)
Q Consensus 112 ~deAl~~yd~~i~~ 125 (192)
+++|.-+|.++|..
T Consensus 223 i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 223 INQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666666655
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=4.1e-05 Score=64.49 Aligned_cols=124 Identities=8% Similarity=-0.035 Sum_probs=100.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcC-----
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC----- 70 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~---~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~G----- 70 (192)
|++.+|...++++++..|+.+++. .++|.++...++|++|...+++.+.+.|+++ ++..-+|.+....+
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 899999999999999999988665 8899999999999999999999999999886 55566665543333
Q ss_pred -------------CHHHHHHHHHHhHhhccCCCCcch------------hhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 71 -------------CFKEAVQFMEECSSTWSSCSSFMY------------THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 71 -------------r~~eai~~~~~a~~~~p~~~~~~~------------~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
...+|+..+++.++..|++.-... +..-++.|-+|+..| .|..|+..++..|..
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~-~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG-AYVAVVNRVEQMLRD 204 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHH
Confidence 146889999999999999642100 112346888999998 999999999999988
Q ss_pred h
Q 029491 126 E 126 (192)
Q Consensus 126 ~ 126 (192)
-
T Consensus 205 Y 205 (243)
T PRK10866 205 Y 205 (243)
T ss_pred C
Confidence 6
No 112
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1e-05 Score=74.77 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=100.3
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
.+++++..+.+|-.+-|+..--...+|.-+..++.+..|+..+.+|++++|+||-..|-+|.|-+..+.+.+|+.+++.+
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 34444444444444444443333445555666788888888999999999999999999999999999999999999999
Q ss_pred HhhccCCC---CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcc
Q 029491 83 SSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 154 (192)
Q Consensus 83 ~~~~p~~~---~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~ 154 (192)
+.-=+... .+ +.-.+-++|..+-.++ .+++|+..|++++... | .+..-.+|+=|.-.+.|-.
T Consensus 441 l~~ik~~~~e~~~-w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~--~------k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 441 LEVIKSVLNEKIF-WEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLS--P------KDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HHHhhhccccccc-hhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcC--C------CchhHHHHHHHHHHHhcCh
Confidence 92211111 11 2112336999999998 9999999999999884 2 2344466666666666653
No 113
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.25 E-value=6.1e-06 Score=80.02 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=111.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
+....|+.++.+||..+|-+-|+-+=.|-+|.+.|++.+|..++.+..+---+++.++-|+|||+..+|++..||..|+.
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999998887778999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 149 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~ 149 (192)
+++..-..+. .++--=||-++++.| .+.++....-.++... |++ +...-|-+-.+.++.
T Consensus 706 ~lkkf~~~~~---~~vl~~Lara~y~~~-~~~eak~~ll~a~~~~--p~~---~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 706 CLKKFYKKNR---SEVLHYLARAWYEAG-KLQEAKEALLKARHLA--PSN---TSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHhcccCC---HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhC--Ccc---chHHhHHHHHHHHHH
Confidence 9965443222 233333999999998 8999999888877763 332 123335444455443
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.22 E-value=5.3e-05 Score=73.15 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++|...+..++..+|..+.++.++|-+++++|+.+.+....--|--|||+|..-|..++--...+|..++|+-.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|+...|.+-. .-|..+..+...| ++-+|..-|.+.+...
T Consensus 232 rAI~~~p~n~~-----~~~ers~L~~~~G-~~~~Am~~f~~l~~~~ 271 (895)
T KOG2076|consen 232 RAIQANPSNWE-----LIYERSSLYQKTG-DLKRAMETFLQLLQLD 271 (895)
T ss_pred HHHhcCCcchH-----HHHHHHHHHHHhC-hHHHHHHHHHHHHhhC
Confidence 99999998532 6678899899999 8999999998888763
No 115
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.22 E-value=6.9e-06 Score=78.06 Aligned_cols=89 Identities=19% Similarity=0.102 Sum_probs=84.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEE--AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~--~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
|...+|...+.-++.++|+++-....+|-.+.+.|+-.-|+. +.+-|+.++|.++.||..+|+|+..+|+.++|.+.|
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 678899999999999999999999999999999997766777 999999999999999999999999999999999999
Q ss_pred HHhHhhccCCC
Q 029491 80 EECSSTWSSCS 90 (192)
Q Consensus 80 ~~a~~~~p~~~ 90 (192)
..++.+.+.+|
T Consensus 778 ~aa~qLe~S~P 788 (799)
T KOG4162|consen 778 QAALQLEESNP 788 (799)
T ss_pred HHHHhhccCCC
Confidence 99999988875
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.18 E-value=7.3e-06 Score=72.45 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 18 ~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
+|.+..-|.-+|-.+...|++..|...+..|+++||++-.|....|.|+...|+.+.|+.-+++.+.+-|+. +.+..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF---~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF---MAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH---HHHHH
Confidence 567788888899999999999999999999999999999999999999999999999999999999998874 45555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
. .|..+|..| ++|+|.+-|+..+.-+
T Consensus 111 Q--Rg~vllK~G-ele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 111 Q--RGVVLLKQG-ELEQAEADFDQVLQHE 136 (504)
T ss_pred H--hchhhhhcc-cHHHHHHHHHHHHhcC
Confidence 4 888999999 9999999999998875
No 117
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.9e-05 Score=71.03 Aligned_cols=119 Identities=17% Similarity=0.079 Sum_probs=99.2
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----HHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIF------------GILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHV 65 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~------------~~laf~L~e~g~~~eAe~~~rrALaL~P~da----~A~h~lahv 65 (192)
++.+.+...++++|.++|+....- -.-|.-+...|.|..|.+.+-.||.++|++. --+.++|.|
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 456778888999999999875333 2335556679999999999999999999864 457899999
Q ss_pred HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
....||.+|||..++.++.++|.. +.+. --.|.+|+.++ ++++|++-|++++...
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~sy---ikal--l~ra~c~l~le-~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSY---IKAL--LRRANCHLALE-KWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHH---HHHH--HHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 999999999999999999998774 2332 24899999998 9999999999999885
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=5.1e-05 Score=69.17 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
|....+..-.|....+.|.+++|+...+.-++..|+|+|.+-..+.++...++.++|++.+++++.+.|..+- .+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-----l~ 377 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL-----LQ 377 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-----HH
Confidence 4555666666778889999999999999999999999999999999999999999999999999999999642 44
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
-.+|..++..| ++.+|+.+..+.+...
T Consensus 378 ~~~a~all~~g-~~~eai~~L~~~~~~~ 404 (484)
T COG4783 378 LNLAQALLKGG-KPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHhcC-ChHHHHHHHHHHhhcC
Confidence 46999999998 9999999999888775
No 119
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.1e-05 Score=71.95 Aligned_cols=120 Identities=14% Similarity=0.018 Sum_probs=96.0
Q ss_pred CChHHHHHHHHhhcCCCC----CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQ----QE-----------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p----~~-----------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl 66 (192)
|++..|...++||+..-+ .+ --+|.++|.++...++|.+|+..+.++|+++|+|+-|+...|.++
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 788889999999877422 11 267899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+|+++.|+..+++++.+.|.+. ..++. +..+.-......+..-++|.+...+.
T Consensus 302 l~~~e~~~A~~df~ka~k~~P~Nk---a~~~e--l~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 302 LALGEYDLARDDFQKALKLEPSNK---AARAE--LIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HhhccHHHHHHHHHHHHHhCCCcH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999964 34433 33332222213455578888888774
No 120
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.14 E-value=7.8e-06 Score=66.13 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=71.1
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC--
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-- 71 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~----------~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr-- 71 (192)
++.++..++.....+|.|+..+..-|.+|.|..++ ++|+.-+++||.|||+...|+.++|.++..+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 56788889999999999999999999999987544 568888999999999999999999999998887
Q ss_pred ---------HHHHHHHHHHhHhhccCC
Q 029491 72 ---------FKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 72 ---------~~eai~~~~~a~~~~p~~ 89 (192)
+++|...+++|.+..|.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 778888888899999885
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=5.2e-05 Score=73.56 Aligned_cols=125 Identities=11% Similarity=-0.006 Sum_probs=96.8
Q ss_pred CCChHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC------CHHHHHHHHHHHHhc
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQHD 69 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~-----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~------da~A~h~lahvl~~~ 69 (192)
.|+++++....++++...|.. ..+..++|.++...|++++|+..+++++++.+. ..++...+|.++..+
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 488999999999998854432 246678899999999999999999999987543 246778899999999
Q ss_pred CCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|...+++++..-..... .......+.+|..++..| ++++|.+.+++.+...
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVL 603 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhh
Confidence 9999999999999976433210 011223345788888888 9999999999987753
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.3e-05 Score=73.54 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=86.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+++.+...+..++.++|.+...+++.+-++...|+|++|..-+.+.+.|+|+=+-++...|.++.-.|++++|+..|.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCC
Q 029491 82 CSSTWSSCS 90 (192)
Q Consensus 82 a~~~~p~~~ 90 (192)
-+...|++.
T Consensus 96 GL~~d~~n~ 104 (539)
T KOG0548|consen 96 GLEKDPSNK 104 (539)
T ss_pred HhhcCCchH
Confidence 999999864
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=3.6e-05 Score=75.41 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=103.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-------------------HHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------------------WSQHA 61 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-------------------~A~h~ 61 (192)
.|+++++.+.++.++...|+...++.++|+.+.+.+++.+|..+ +++.+-|.+. .|+.+
T Consensus 44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence 37889999999999999999999999999999999999998888 8888888888 99999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 62 LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 62 lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|.++...|+.+++.+.|+++++.+|+++. +-| ++|-++-+. +.++|...|.+++..-
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~---aLN--n~AY~~ae~--dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPE---IVK--KLATSYEEE--DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHH---HHH--HHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999753 233 388877665 7999999999998874
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=7.5e-05 Score=63.51 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=104.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++.+|++.+++.++.+|.|...+--.=-++..+|+--+|++..-.=|..=|+|..|||-++.++...|.++.|+=.++
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 47899999999999999999988887776778889999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCC--CHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHS--PMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~--~~deAl~~yd~~i~~ 125 (192)
+.+=++|.++ ..|-. +|-.++..|| +++-+...|.+++-.
T Consensus 179 E~ll~~P~n~---l~f~r--lae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQPFNP---LYFQR--LAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCCCcH---HHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999864 34443 7777766664 567788889888876
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.07 E-value=5.6e-05 Score=73.32 Aligned_cols=124 Identities=12% Similarity=0.019 Sum_probs=96.2
Q ss_pred CCChHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--------CHHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--------DCWSQHALCHVL 66 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--------da~A~h~lahvl 66 (192)
.|++++++..+++++..... ...++..+|.++...|++++|++.+++++++... ....+..+|.++
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 48999999999998875321 2356778899999999999999999999997432 244566889999
Q ss_pred HhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
..+|++++|.+.++++++......+.........+|..++..| ++++|.+.+++....
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG-DLDNARRYLNRLENL 641 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999876543221112333344788888998 999999999998765
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=3.8e-05 Score=59.04 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=73.0
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
.|++++|...+++++...|+. +.+...+|.++...|++++|....+. +.-++-.+.+...+|.++..+|+.++|+.
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 389999999999999987765 46788899999999999999999866 56677788999999999999999999999
Q ss_pred HHHHhH
Q 029491 78 FMEECS 83 (192)
Q Consensus 78 ~~~~a~ 83 (192)
.|++++
T Consensus 140 ~y~~Al 145 (145)
T PF09976_consen 140 AYQKAL 145 (145)
T ss_pred HHHHhC
Confidence 999874
No 127
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.7e-05 Score=70.25 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=97.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHH-HHHHHcCCHHH-HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILA-FSLLELGQMSD-AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~la-f~L~e~g~~~e-Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
|++.||+....-++..-|.++..+..+| .++.+.-...| |...++++|.++|.-.-|+..++..+.+.|+.+++|..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 4556666666666666677777777775 56666665544 999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++...|++. .|+ |+|.+..... .+++++..|-.+++..
T Consensus 462 e~~L~~~~D~~----LH~--~Lgd~~~A~N-e~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLIIFPDVN----LHN--HLGDIMRAQN-EPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhccccH----HHH--HHHHHHHHhh-hHHHHHHHHHHHHhcC
Confidence 99999999974 344 5999988887 8999999999998874
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.04 E-value=7.8e-05 Score=72.58 Aligned_cols=122 Identities=10% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
||+...|+..++||+.++|.+..++--||.+..... -+..|.....+|..+||+||.+..-|+.-++..|+++.++.
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 355566666666666666666555555555444333 33446666666666666666666666555555555555555
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.++.++...-.. + +.++....+|-++-..| +||+|...|-.++..
T Consensus 292 la~~ai~~t~~~-~-~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 292 LAEHAIKNTENK-S-IKAESFYQLGRSYHAQG-DFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhhhh-H-HHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHcc
Confidence 555555433221 1 23444444555555555 555555555444433
No 129
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.03 E-value=0.00011 Score=68.47 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++.+|+..+.+|+.+.|..+..+...|-+|...|++.+|.+..+.|-.||+.|-..-.-.+-.+...|+.++|...+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhHhhccC-CCCcchhhhHH---HHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 81 ECSSTWSS-CSSFMYTHNWW---HVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 81 ~a~~~~p~-~~~~~~~h~~W---hlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
.-.+..-+ ..........| -.|.+|+..| ++..|+..|.....
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQG-DYGLALKRFHAVLK 333 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 88765521 11111122334 3678888888 89999998865443
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=3.9e-05 Score=69.09 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=77.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++..+|.+.+.+++...|.++..+...|-.|...++++.|.+.+++|+.+.|++-..|..|+.++...|++++|+..+..
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred hH
Q 029491 82 CS 83 (192)
Q Consensus 82 a~ 83 (192)
+-
T Consensus 294 ~P 295 (395)
T PF09295_consen 294 CP 295 (395)
T ss_pred Cc
Confidence 54
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.99 E-value=0.00028 Score=57.49 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=97.3
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcC----
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC---- 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~G---- 70 (192)
.|++.+|...+++++...|.. +.+..++|.++...|++++|...+++-+...|+++ +|..-+|.+...+.
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 388999999999999988865 47788999999999999999999999999999987 47777788766654
Q ss_pred -------CHHHHHHHHHHhHhhccCCCCcchh------------hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 71 -------CFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 71 -------r~~eai~~~~~a~~~~p~~~~~~~~------------h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
...+|+..++..+...|+++-...+ ..-+..|.+++..| .|..|+..|+..|..-
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~-~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG-KYKAAIIRFQYVIENY 171 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHS
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHC
Confidence 3458999999999999997531001 12356899999998 9999999999999885
No 132
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0002 Score=64.75 Aligned_cols=120 Identities=10% Similarity=0.063 Sum_probs=102.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
.++..|+...++++..+|.+..++-+.|..|...||.++|.-++|.|.-|.|-+-..+--+-|.+..+|+++||......
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHH-HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHV-ALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~Whl-Al~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++.-|.+.. .--- + +..++..-.--|+|-+.||+.+..+
T Consensus 394 ~~~~~~~sA~---~LtL--~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 394 TIRLFQNSAR---SLTL--FGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHhhcchh---hhhh--hcceeeccCchhHHHHHHHHHhhhccC
Confidence 9999888532 1111 2 2333332112489999999999885
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.96 E-value=7.5e-05 Score=66.21 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=103.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++..|+..+-.|++.+|++..+..-.|.++..+|+-.-|..-..|.|++.|+..-|.-..|+|+..+|..++|++-++
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD 130 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhh-------hHH---HHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTH-------NWW---HVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h-------~~W---hlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
..+...|+........ -.| +........| ++..|++..+..+..
T Consensus 131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G-D~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG-DCQNAIEMITHLLEI 184 (504)
T ss_pred HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHhc
Confidence 9999998754311111 122 3444455566 788888777665544
No 134
>PRK15331 chaperone protein SicA; Provisional
Probab=97.95 E-value=4.8e-05 Score=60.71 Aligned_cols=84 Identities=15% Similarity=-0.052 Sum_probs=80.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+..+|...++-..-.+|.++..+.-+|-++...++|++|+..+-.|..++++||-..+-.|-++.+.|+.++|+..++.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred hHhh
Q 029491 82 CSST 85 (192)
Q Consensus 82 a~~~ 85 (192)
++..
T Consensus 131 a~~~ 134 (165)
T PRK15331 131 VNER 134 (165)
T ss_pred HHhC
Confidence 9983
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.8e-05 Score=67.12 Aligned_cols=124 Identities=10% Similarity=0.064 Sum_probs=108.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH------------HHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS------------QHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A------------~h~lahvl~~ 68 (192)
+|+.+++.+..-+++.+++.+.+++...|.++.-++..+.|..++.++|.++|+.-.+ +-.-|.-...
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred cccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 4788899999999999999999999999999999999999999999999999887544 4455777788
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|+..+|-+.|..++.+.|++-. .-+|.+|+.|+..+.+| +.++|+.-.+.++..+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~-~naklY~nra~v~~rLg-rl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKK-TNAKLYGNRALVNIRLG-RLREAISDCNEALKID 317 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccc-hhHHHHHHhHhhhcccC-CchhhhhhhhhhhhcC
Confidence 99999999999999999999654 36788999999999999 9999999999888773
No 136
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.94 E-value=3.3e-05 Score=52.82 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 53 P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|+-+.++.++|.++..+|++++|+..+++++++....+.- ..+....++|.++...| ++++|+..|++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 4556789999999999999999999999999774332210 01335567999999999 999999999998865
No 137
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=2.4e-05 Score=44.99 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d 55 (192)
+.++..+|.++..+|++++|++.+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567778888888888888888888888888875
No 138
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00022 Score=60.93 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
....|+-+...|+|.+|+..++.-+.-=|++ +.|+..||.+++.+|++++|...+..+.+.+|+++- ....-.-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K--ApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK--APDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC--ChHHHHHH
Confidence 6788999999999999999999999999986 479999999999999999999999999999999875 44566779
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 102 ALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 102 Al~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|.+..++| +.|+|.+.|++.+...
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHC
Confidence 99999999 9999999999999886
No 139
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=2.8e-05 Score=65.09 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=83.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|-.+-|+--+.+++++.|+-|.+.+.+|.-|.+.|+|+.|.+.+.-.++|+|..-.|+-|.|-.++.-||+.=|.+-+.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 55667777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCC
Q 029491 82 CSSTWSSCS 90 (192)
Q Consensus 82 a~~~~p~~~ 90 (192)
.-..+|++|
T Consensus 159 fYQ~D~~DP 167 (297)
T COG4785 159 FYQDDPNDP 167 (297)
T ss_pred HHhcCCCCh
Confidence 888888865
No 140
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.89 E-value=8.5e-05 Score=60.16 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHH
Q 029491 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL 106 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~----------~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l 106 (192)
-|+.|.+.++...+.||+|+.++++-|.+|.++.++ ++||.=+++|+.++|+. ....|.+|.+|.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~t 80 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-----HDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHH
Confidence 367899999999999999999999999999998666 56788888899999884 346777888776
Q ss_pred hCC---CC-------HHHHHHHHHHhhhhh
Q 029491 107 EGH---SP-------MRKVLEIYDNHIWKE 126 (192)
Q Consensus 107 ~~G---~~-------~deAl~~yd~~i~~~ 126 (192)
.+| .+ |++|...|++++..+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 654 02 566666677666664
No 141
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=9.1e-05 Score=70.37 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=105.9
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
+++.++....++.++.+|-....+..+|.+-.+.+++..|...|-+.+.++|++..++.|++-.+...|+-.+|...+.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 67899999999999999999988889999889999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++.-+-++. .+|-|.-+....-| .+|+|++.|.+.+.-+
T Consensus 579 AlKcn~~~w-----~iWENymlvsvdvg-e~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 579 ALKCNYQHW-----QIWENYMLVSVDVG-EFEDAIKAYHRLLDLR 617 (777)
T ss_pred HhhcCCCCC-----eeeechhhhhhhcc-cHHHHHHHHHHHHHhh
Confidence 998763322 24556666778898 9999999998887765
No 142
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.00042 Score=56.97 Aligned_cols=113 Identities=19% Similarity=0.024 Sum_probs=88.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (192)
Q Consensus 9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa-L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p 87 (192)
+-..+.+...|.. .-+.-+|.++.|.|++.||+.++.+|++ +--+|+..+-.++.++...+++.++...++...+.+|
T Consensus 77 Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 77 REATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3334444444433 2345678899999999999999999997 7788999999999999999999999999999999988
Q ss_pred CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 88 ~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
...+ ...|.- +|-.+-.+| .++.|...++.++.-.
T Consensus 156 a~r~-pd~~Ll--~aR~laa~g-~~a~Aesafe~a~~~y 190 (251)
T COG4700 156 AFRS-PDGHLL--FARTLAAQG-KYADAESAFEVAISYY 190 (251)
T ss_pred ccCC-CCchHH--HHHHHHhcC-CchhHHHHHHHHHHhC
Confidence 8654 355544 666666677 8999999999888764
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.87 E-value=0.00089 Score=56.38 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ---HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~---h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
++......|..+.+.|+|++|++.+++.+...|+.+++. ..+|.++..+|+.++|+..+++.++.+|+++.. ...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--HHH
Confidence 455666788888999999999999999999999999887 888999999999999999999999999998763 334
Q ss_pred HHHHHHHHHhCCC-----------------CHHHHHHHHHHhhhhh
Q 029491 98 WWHVALCYLEGHS-----------------PMRKVLEIYDNHIWKE 126 (192)
Q Consensus 98 ~WhlAl~~l~~G~-----------------~~deAl~~yd~~i~~~ 126 (192)
..-+|+++..++. ...+|+..+++-|..-
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y 154 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY 154 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence 4457776544320 1356888898988885
No 144
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0005 Score=56.56 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~ 77 (192)
+||+.|+...+++++. ...+|+..+--++.++.+.+++.+|....+.-.+-+|. .|..+-.+|.++..+|+.++|..
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 5999999999999998 78899999999999999999999999999999999986 78899999999999999999999
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHH
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~ 121 (192)
.++.++.-.|+. .+-.. .+.++...| +.+++-+-|..
T Consensus 182 afe~a~~~ypg~----~ar~~--Y~e~La~qg-r~~ea~aq~~~ 218 (251)
T COG4700 182 AFEVAISYYPGP----QARIY--YAEMLAKQG-RLREANAQYVA 218 (251)
T ss_pred HHHHHHHhCCCH----HHHHH--HHHHHHHhc-chhHHHHHHHH
Confidence 999999999883 33444 677788888 88888877644
No 145
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.82 E-value=0.00088 Score=52.31 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
+..+..-|....+.|+|++|++.++.-..--|..+ .|.-.++.+++.+|++++|++.+++-++++|.++.. .-..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v--dYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV--DYAY 87 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc--cHHH
Confidence 46677889999999999999999999988887755 678889999999999999999999999999998763 3455
Q ss_pred HHHHHHHHhCCCC---------------HHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSP---------------MRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~---------------~deAl~~yd~~i~~~ 126 (192)
...||+++... + ..+|+.-|++.|..-
T Consensus 88 Y~~gL~~~~~~-~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 88 YMRGLSYYEQD-EGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHHHh-hhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 67888888875 5 677777777777764
No 146
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.81 E-value=5.2e-05 Score=71.19 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=103.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
+++...+..++++|.-.|+.+.-+.|.|..|.-.|+-++|-...|.++..+|.+.--||.+|-++-...+++|||.+|+.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|+.+.|++.. ++-.+++....+| +|+-....-.+.+..
T Consensus 101 Al~~~~dN~q-----ilrDlslLQ~QmR-d~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 101 ALKIEKDNLQ-----ILRDLSLLQIQMR-DYEGYLETRNQLLQL 138 (700)
T ss_pred HHhcCCCcHH-----HHHHHHHHHHHHH-hhhhHHHHHHHHHHh
Confidence 9999999633 6667899888888 787665444343433
No 147
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0001 Score=61.15 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=81.2
Q ss_pred CChHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~-----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
|++.+|...+++||..-|.- +..+++.|.++...+..+.|+..+-+||+|+|..--|+-..|.+++..-.+++|+
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999999999988853 5788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhccC
Q 029491 77 QFMEECSSTWSS 88 (192)
Q Consensus 77 ~~~~~a~~~~p~ 88 (192)
.-|.+.+...|.
T Consensus 189 eDyKki~E~dPs 200 (271)
T KOG4234|consen 189 EDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHhCcc
Confidence 999999999877
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.79 E-value=0.00035 Score=66.19 Aligned_cols=117 Identities=10% Similarity=0.062 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|..++|++..++++...|+.+-++-|+|-+++.+++.+.|.+.|...+...|+.+-.+-.++..-+..|..-.|...++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHH--HhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCY--LEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~--l~~G~~~deAl~~yd~~i~~ 125 (192)
++.-.+|.+.. .| ++... +..| ..+.|-.+..++++.
T Consensus 744 rarlkNPk~~~-----lw--le~Ir~ElR~g-n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 744 RARLKNPKNAL-----LW--LESIRMELRAG-NKEQAELLMAKALQE 782 (913)
T ss_pred HHHhcCCCcch-----hH--HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999999643 44 55555 4578 899999999888875
No 149
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00042 Score=60.87 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=87.6
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
+.+.|+..+.||+..+|...-+--++|-+....|+|+.|.+..++.++-||.- +...-.+.+++..+|+.++++.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888884 57778888888888888888888888
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++..+... ..+- ++-.-....| .++|.....+.+.+.
T Consensus 275 ~~~~~~g~~----~~l~--l~~lie~~~G-~~~Aq~~l~~Ql~r~ 312 (389)
T COG2956 275 AMETNTGAD----AELM--LADLIELQEG-IDAAQAYLTRQLRRK 312 (389)
T ss_pred HHHccCCcc----HHHH--HHHHHHHhhC-hHHHHHHHHHHHhhC
Confidence 888877742 1211 3322222222 567777777777663
No 150
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.77 E-value=0.00044 Score=52.79 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=62.4
Q ss_pred CChHHHHHHHHhhcCCCCCC--------H--------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQE--------D--------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~--------~--------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~ 59 (192)
|+...+...+++++.++.++ . .+...++-.+.+.|++++|+..++++++++|.|-.++
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 56777888888888876321 1 2233345566779999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 60 HALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 60 h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
..+-.++..+|+..+|+..|++..+.
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 151
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.75 E-value=0.0004 Score=54.20 Aligned_cols=89 Identities=9% Similarity=0.043 Sum_probs=79.0
Q ss_pred CChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCC----
Q 029491 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCC---- 71 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr---- 71 (192)
|++.+|...++.+....|..+ .+.-.++.++-..|++++|.+.++|-+.|+|+++ +|+.-.|.+...+..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~ 103 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQ 103 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHh
Confidence 788999999999988888654 6778999999999999999999999999999987 677788888888877
Q ss_pred -----------HHHHHHHHHHhHhhccCCC
Q 029491 72 -----------FKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 72 -----------~~eai~~~~~a~~~~p~~~ 90 (192)
..+|...+++.++.+|++.
T Consensus 104 ~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 104 SFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 8999999999999999853
No 152
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00015 Score=64.06 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=100.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
|+.+.|+..++|.|..--.+|....++|....-.+++|-+...+.||++..-+ -+..|.++|+|....|++.-|...
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 56788899999999998899999999999999999999999999999987653 357899999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++-++..+|+.. .+-| ++|......| +.++|..+|..+-..
T Consensus 418 frlaL~~d~~h~---ealn--NLavL~~r~G-~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 418 FRLALTSDAQHG---EALN--NLAVLAARSG-DILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhccCcchH---HHHH--hHHHHHhhcC-chHHHHHHHHHhhhh
Confidence 999998887743 3334 4999888888 899999999775443
No 153
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.73 E-value=5.4e-05 Score=43.85 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d 55 (192)
.++..+|.++..+|++++|+..+++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777777763
No 154
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.73 E-value=7.4e-05 Score=66.28 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=84.2
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|.+++|++++.+.+..+|-++..+.+.|.++....+|..||.-+..|++||..-.-|+...+.+-...|...||-.-++.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~ 190 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET 190 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCC
Q 029491 82 CSSTWSSCS 90 (192)
Q Consensus 82 a~~~~p~~~ 90 (192)
++++-|...
T Consensus 191 vL~LEP~~~ 199 (536)
T KOG4648|consen 191 VLALEPKNI 199 (536)
T ss_pred HHhhCcccH
Confidence 999998854
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00067 Score=59.66 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=103.4
Q ss_pred ChHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~-----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
++..|++..++...+.|+. +.++.-+|-......++++|.....+|++-||+..-|-.-+|.+...+|+++.|++
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH
Confidence 5678899999888888765 57777888888889999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+++.++.+|..-+ ..---+.-+|-.+| +.++.+....+.+...
T Consensus 236 ~~e~v~eQn~~yl~----evl~~L~~~Y~~lg-~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 236 ALERVLEQNPEYLS----EVLEMLYECYAQLG-KPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhChHHHH----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHcc
Confidence 99999999988643 23334777888898 8999999998888774
No 156
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00012 Score=61.91 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=79.6
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
++..+.+.+.|++..+|.-+..+.+.+..+....+++..+.-++||+++.||.+-++..+|.++.....+.+||..+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 029491 83 SSTW 86 (192)
Q Consensus 83 ~~~~ 86 (192)
..+.
T Consensus 105 ~sl~ 108 (284)
T KOG4642|consen 105 YSLL 108 (284)
T ss_pred HHHH
Confidence 6543
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.70 E-value=0.00046 Score=67.85 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+-+.+-..|++-+++..+|.++..+|+.++|.+.++++|.++|+|+.++.++|..+... +.++|+..+.+|+...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 33344445566699999999999999999999999999999999999999999999999 9999999999998543
No 158
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.65 E-value=0.0006 Score=63.51 Aligned_cols=134 Identities=16% Similarity=0.036 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA 102 (192)
+++..+|--+-..|++++|.+..++||+.+|..+..+...|.++-..|++++|..+++.+..+++.+. .-|. -.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR----yiNs-K~a 269 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR----YINS-KCA 269 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----HHHH-HHH
Confidence 66777888899999999999999999999999999999999999999999999999999999998863 2233 477
Q ss_pred HHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHH---------HHHHHHHHhhhcCcccchhchHHHHHHHHhh
Q 029491 103 LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYL---------NALGLLLRVYVRGELDVFGNRLKVLADCVAD 170 (192)
Q Consensus 103 l~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~---------da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~ 170 (192)
-+.|..| ++++|..+.-.=...+ . .+..++. ..+.-.+|..-.|. .=.|+..|.....+
T Consensus 270 Ky~LRa~-~~e~A~~~~~~Ftr~~----~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~---ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 270 KYLLRAG-RIEEAEKTASLFTRED----V-DPLSNLNDMQCMWFETECAEAYLRQGDYGL---ALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhcCCC----C-CcccCHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHH
Confidence 7778888 9999998875443332 1 1222332 23333445444343 23566666666655
No 159
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.63 E-value=0.00028 Score=61.04 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHh
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF-KEAVQFMEEC 82 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~-~eai~~~~~a 82 (192)
..+|.-.++......|..+..++.+|.+.+.+|+|++|++...+|+..+|+|+.+..|+..+...+|+. ++.-+++.+.
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 456666777766666778888888888888899999999999999999999999888988888888888 4455667776
Q ss_pred HhhccCC
Q 029491 83 SSTWSSC 89 (192)
Q Consensus 83 ~~~~p~~ 89 (192)
....|..
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 6676663
No 160
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.63 E-value=4.6e-05 Score=45.01 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 029491 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEE 43 (192)
Q Consensus 11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~ 43 (192)
++|+++++|+++.++.++|.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999973
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.61 E-value=0.003 Score=51.43 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
++..+...|..+.+.|+|++|...+++.+...|+++ .|...+|.++..+|++++|+..+++.++..|+++. ....
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--ADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhhH
Confidence 456677888899999999999999999999998876 56788999999999999999999999999999875 3445
Q ss_pred HHHHHHHHHhCC----------CCHHHHHHHHHHhhhhhhCCCCCCCh
Q 029491 98 WWHVALCYLEGH----------SPMRKVLEIYDNHIWKELEKPDAVHP 135 (192)
Q Consensus 98 ~WhlAl~~l~~G----------~~~deAl~~yd~~i~~~~~~~~~~~~ 135 (192)
...+|++++... ....+|+..|+.-|..- | +|...
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P-~S~y~ 126 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--P-NSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---T-TSTTH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--c-CchHH
Confidence 556777765432 03458899999998875 4 44444
No 162
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00047 Score=63.19 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=93.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.+.+...+..+|.-+..-..++.+.|.+.+..|++++|.+++-+--++=.+++..+..++.+++...++..||+++-+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 88899999999999988888899999999999999999999999998888889999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~y 119 (192)
+..+-|.+|.. ---+|-.|-..| +-..|.+.|
T Consensus 584 ~~slip~dp~i-----lskl~dlydqeg-dksqafq~~ 615 (840)
T KOG2003|consen 584 ANSLIPNDPAI-----LSKLADLYDQEG-DKSQAFQCH 615 (840)
T ss_pred hcccCCCCHHH-----HHHHHHHhhccc-chhhhhhhh
Confidence 99888887642 113555554455 556666554
No 163
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.60 E-value=0.00037 Score=54.30 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=79.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH----DCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~----da~A~h~lahvl~~~Gr~~eai~ 77 (192)
|+.++++..+.+++.+-|..+.++++.|-++.-+|+.++|..-..+||+|.-. -+.++...|.++-.+|+-+.|..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 78999999999999999999999999999999999999999999999999743 45778889999999999999999
Q ss_pred HHHHhHhhc
Q 029491 78 FMEECSSTW 86 (192)
Q Consensus 78 ~~~~a~~~~ 86 (192)
-++++.++-
T Consensus 137 DFe~AA~LG 145 (175)
T KOG4555|consen 137 DFEAAAQLG 145 (175)
T ss_pred hHHHHHHhC
Confidence 999999884
No 164
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.57 E-value=0.0065 Score=61.14 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=7.9
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q 029491 31 SLLELGQMSDAEEAAKKGLK 50 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALa 50 (192)
++...|++++|++.+++...
T Consensus 588 ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33333444444444333333
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.00048 Score=58.82 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=87.6
Q ss_pred CChHHHHHHHHhhcCCC-----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--CCC----HHHHHHHHHHHHhc
Q 029491 2 GRPDLCFDIIHQVLPYN-----QQE-DFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHD----CWSQHALCHVLQHD 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~~-----p~~-~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--P~d----a~A~h~lahvl~~~ 69 (192)
|++.+|...+.++.... +.. +..+...+.++.+. ++++|+..+++|+.+- -++ +..+..+|.+++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 56777888888776532 111 34444555555555 9999999999999973 222 56788999999999
Q ss_pred -CCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 -CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 -Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..|++|.......... ......-.+|.++..+| +|++|+.+|++.+...
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 99999999999999887664421 12224457899999999 9999999999987753
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.48 E-value=0.00099 Score=57.62 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--CFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G--r~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
++.....+.-.++...+|++.|++..+..-..+.++.-..-+-++|...+| ...+|.-+|++.....+..+ ...+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~---~~ln 205 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP---KLLN 205 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH---HHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 567777788889999999999999999999999999999999999999988 48999999999777655532 2334
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcc
Q 029491 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 154 (192)
Q Consensus 98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~ 154 (192)
.+|.+++.+| +|++|..++.+++... + + .+..+ +++.-.-.+.|.+
T Consensus 206 --g~A~~~l~~~-~~~eAe~~L~~al~~~--~-~--~~d~L---aNliv~~~~~gk~ 251 (290)
T PF04733_consen 206 --GLAVCHLQLG-HYEEAEELLEEALEKD--P-N--DPDTL---ANLIVCSLHLGKP 251 (290)
T ss_dssp --HHHHHHHHCT--HHHHHHHHHHHCCC---C-C--HHHHH---HHHHHHHHHTT-T
T ss_pred --HHHHHHHHhC-CHHHHHHHHHHHHHhc--c-C--CHHHH---HHHHHHHHHhCCC
Confidence 4999999999 9999999999988764 2 1 22333 3444445566664
No 167
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.46 E-value=0.00046 Score=61.34 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (192)
Q Consensus 28 laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~ 107 (192)
.|..+-.+|.|+||+.+|-+++++.|.|+--+.+.+.++..+.+|.-|..-++.++.++.. ..-.+-..+.+..+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-----Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-----YVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-----HHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999999999999999998644 23334457777889
Q ss_pred CCCCHHHHHHHHHHhhhhh
Q 029491 108 GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 108 ~G~~~deAl~~yd~~i~~~ 126 (192)
+| ...||-.-|++.++.+
T Consensus 178 Lg-~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 178 LG-NNMEAKKDCETVLALE 195 (536)
T ss_pred Hh-hHHHHHHhHHHHHhhC
Confidence 98 8999999999999885
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.45 E-value=0.0071 Score=44.88 Aligned_cols=119 Identities=20% Similarity=0.308 Sum_probs=89.6
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINK---HDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf-~L~e~g~~~eAe~~~rrALaL~P---~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
....+.....+++...+.+.......+. ++...|++++|...+.+++.++| .........+..+...|+.++++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 4556777778888877776655666666 78888888888888888888877 4667777777778888888888888
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+.+.+...+... ......++..+...| +++++...+...+...
T Consensus 190 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 190 LEKALKLNPDDD----AEALLNLGLLYLKLG-KYEEALEYYEKALELD 232 (291)
T ss_pred HHHHHhhCcccc----hHHHHHhhHHHHHcc-cHHHHHHHHHHHHhhC
Confidence 888888877721 113334777777777 7888888888888774
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.44 E-value=0.00093 Score=65.66 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=58.9
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
+...++..+-|++.++|..+-++..+|..+.+-.++-+|..++++|.+|+|.|+.+.-+.+.++......++|....
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888877777766666555555554443
No 170
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.40 E-value=0.0026 Score=60.67 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
.....++...+...|+.++|...+++
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 33334444444444444444444443
No 171
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.39 E-value=0.0018 Score=59.74 Aligned_cols=113 Identities=15% Similarity=0.221 Sum_probs=83.9
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------C--------------CC----HHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------K--------------HD----CWS 58 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------P--------------~d----a~A 58 (192)
...-.....+||+.+|+-+.++..+|- ++..-..||++.++||++.. . .+ ..+
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 344566788899999999999888753 23444566666666665433 1 11 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~ 122 (192)
...+|.+.-..|+.+|||+.++..++..|..+. +..|. ++-.++|+++ +|+++-++..+-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-l~Ire--nLie~LLelq-~Yad~q~lL~kY 321 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-LNIRE--NLIEALLELQ-AYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-hhHHH--HHHHHHHhcC-CHHHHHHHHHHh
Confidence 677899999999999999999999999887543 34554 4899999998 899998877663
No 172
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.39 E-value=0.003 Score=60.24 Aligned_cols=115 Identities=13% Similarity=0.008 Sum_probs=78.0
Q ss_pred CChHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|+.+++.......+... +.+..+++.+..++..+|++++|++.+++... .|...+.++...+...|+.++|+..++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556666666555543 45666677777788888888888888887653 366788888888888888888888888
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
+....... |.. .+ +-.+-.++...| .+++|+.+|+....
T Consensus 416 ~M~~~g~~-Pd~-~T--~~~ll~a~~~~g-~~~~a~~~f~~m~~ 454 (697)
T PLN03081 416 RMIAEGVA-PNH-VT--FLAVLSACRYSG-LSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHhCCC-CCH-HH--HHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 87754332 210 11 112334445666 78888888887765
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.38 E-value=0.00049 Score=67.55 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=71.6
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH------------------------------------HHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD------------------------------------AEEAAKK 47 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e------------------------------------Ae~~~rr 47 (192)
.-.|..++++|.++||.++.+....+-++.+....++ |...++.
T Consensus 508 m~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 508 MKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 3456777888888888776665555555555555544 4555666
Q ss_pred HhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 48 GLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 48 ALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
||..+|+|-..+-.+|.++...||...|+..+.++..+.|.+- . ..+..|...-..| .|.+++..+...|..
T Consensus 588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y--~~fk~A~~ecd~G-kYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---Y--GRFKEAVMECDNG-KYKEALDALGLIIYA 659 (1238)
T ss_pred HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---H--HHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666665532 1 2223555555566 666666666665554
No 174
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.37 E-value=0.00049 Score=39.36 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
|.+++.+|.++..+|++++|+..+++++.+.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999999887
No 175
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.35 E-value=0.0084 Score=60.32 Aligned_cols=117 Identities=13% Similarity=0.037 Sum_probs=67.1
Q ss_pred CChHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----ccCCCHHHHHHHHHHHHhcCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK----INKHDCWSQHALCHVLQHDCCFKEA 75 (192)
Q Consensus 2 G~~~~al~~~~ral~~--~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa----L~P~da~A~h~lahvl~~~Gr~~ea 75 (192)
|+.++|+..+.+.... .|+ ...++.+-.++...|++++|.+.+++... +.|+ ...+.++-.++...|+.++|
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRA 598 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHH
Confidence 6666777766666442 343 45566666666777777777777776654 3443 45666666777777777777
Q ss_pred HHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++.+++..+....... ...+ -+-..+...| ++++|+.+|+.....
T Consensus 599 ~elf~~M~e~gi~p~~--~tyn--sLI~ay~k~G-~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTP--EVYT--IAVNSCSQKG-DWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHcCCCCCh--HHHH--HHHHHHHhcC-CHHHHHHHHHHHHHc
Confidence 7777766655322111 1111 1333334455 566666666655544
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0014 Score=55.98 Aligned_cols=90 Identities=13% Similarity=0.002 Sum_probs=81.3
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~e 74 (192)
.|++.+|.+.+..-+...|++ +.++.-||-++..+|+|++|...+.+++.-.|+++ .++.-||.++...|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 378899999999999888876 46788899999999999999999999999887765 669999999999999999
Q ss_pred HHHHHHHhHhhccCCC
Q 029491 75 AVQFMEECSSTWSSCS 90 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~ 90 (192)
|.+.+++....+|..+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 9999999999999964
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0013 Score=58.95 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHH-HHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA-VQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ea-i~~~ 79 (192)
++++.+|+.++.+||+.+|.+.=++.-.|-++...|+|+.|+..+++|++++|+|-.+...+......-.+..+- ...|
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999888888877766666655 4555
Q ss_pred HHhH
Q 029491 80 EECS 83 (192)
Q Consensus 80 ~~a~ 83 (192)
.+.+
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
No 178
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.007 Score=55.72 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=79.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-----------
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC----------- 70 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G----------- 70 (192)
|+.+++++++-+.-.+--+++.++..+|.+++-..+..+|++.+-++..+=|+||..+.-++..+-..|
T Consensus 538 ~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 555555555555544444555555555555555555555555555555555555555555555554444
Q ss_pred -----------------------CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 71 -----------------------CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 71 -----------------------r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
=.+.+|.+++++.-+.|... ....-.|.|+-..| +|.+|+..|...-+.-
T Consensus 618 syryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-----kwqlmiasc~rrsg-nyqka~d~yk~~hrkf- 690 (840)
T KOG2003|consen 618 SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-----KWQLMIASCFRRSG-NYQKAFDLYKDIHRKF- 690 (840)
T ss_pred cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-----HHHHHHHHHHHhcc-cHHHHHHHHHHHHHhC-
Confidence 45666777777766666521 12223677777777 9999999996644432
Q ss_pred CCCCCCChHHHHHHHHHHHHhh
Q 029491 128 EKPDAVHPEVYLNALGLLLRVY 149 (192)
Q Consensus 128 ~~~~~~~~~~~~da~sLL~Rl~ 149 (192)
.+-+|..-+|-|+.
T Consensus 691 --------pedldclkflvri~ 704 (840)
T KOG2003|consen 691 --------PEDLDCLKFLVRIA 704 (840)
T ss_pred --------ccchHHHHHHHHHh
Confidence 24567888887764
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.24 E-value=0.024 Score=42.01 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=96.7
Q ss_pred CChHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH-HHHhcCCHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH-VLQHDCCFKEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~--~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah-vl~~~Gr~~eai~~ 78 (192)
|+...+.......+. ..+.....+...+......+.+.++.+....++..++.+......... ++...|++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 556677777777776 678888889999999999999999999999999999998777777777 89999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++...|.... ........+..+...| ++++++..+++.+...
T Consensus 153 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 153 YEKALELDPELNE--LAEALLALGALLEALG-RYEEALELLEKALKLN 197 (291)
T ss_pred HHHHHhcCCCccc--hHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhhC
Confidence 9999876552011 2233333444456677 8999999999988874
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.21 E-value=0.0037 Score=59.46 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=87.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
||..+++..+.+++..+|.+-..+..---...++.++++|...+.+|....|. .-.+.--++..-.+|..+||+.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 77788888888888888876555433333556677888888888888887665 44667777888889999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...|+++- +|.-+|..+=..+ +.+.|...|...+..
T Consensus 677 ~lk~fp~f~K-----l~lmlGQi~e~~~-~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 677 ALKSFPDFHK-----LWLMLGQIEEQME-NIEMAREAYLQGTKK 714 (913)
T ss_pred HHHhCCchHH-----HHHHHhHHHHHHH-HHHHHHHHHHhcccc
Confidence 9999888542 5556777776677 788888888776654
No 181
>PLN03077 Protein ECB2; Provisional
Probab=97.16 E-value=0.025 Score=55.26 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=28.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 30 FSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 30 f~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.++..+|++++|...+.+. +.|..++.++...+.+.|+.++|+..+++..+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555666665555553 44555566666666666666666666665543
No 182
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.15 E-value=0.0011 Score=38.16 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
|.++..+|.++..+|++++|+..+++++.++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999999886
No 183
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0033 Score=58.88 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=89.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++++..+.+++...|++..+.-..=.++...++|++|....+.=.++.-.+.-- +-.+.+++.+++.+|++..++.
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHHHHHHHhc
Confidence 678999999999999999999999999999999999999996665544433333322 5789999999999999999995
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+-++.+. .-|. .|..++.+| +|++++.+|..-+.-
T Consensus 105 ~~~~~~~-----ll~L---~AQvlYrl~-~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 105 LDRLDDK-----LLEL---RAQVLYRLE-RYDEALDIYQHLAKN 139 (652)
T ss_pred ccccchH-----HHHH---HHHHHHHHh-hHHHHHHHHHHHHhc
Confidence 5444321 2344 677888898 999999999665544
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.09 E-value=0.0011 Score=40.84 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
|.++..+|.++..+|++++|++.++++++..|+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 46889999999999999999999999999999964
No 185
>PLN03077 Protein ECB2; Provisional
Probab=97.08 E-value=0.013 Score=57.24 Aligned_cols=112 Identities=12% Similarity=0.161 Sum_probs=84.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
|+.++|+..+.+. +.|...++.+-.++...|+.++|++.+++... +.|+. .....+-.++...|+.+||+..+
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHH
Confidence 6777888777765 55677888888899999999999999998776 45654 45667777888899999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~ 122 (192)
++..+..+-.|. ..|+. -+...+-..| ++++|..++++.
T Consensus 613 ~~M~~~~gi~P~--~~~y~-~lv~~l~r~G-~~~eA~~~~~~m 651 (857)
T PLN03077 613 HSMEEKYSITPN--LKHYA-CVVDLLGRAG-KLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhCCCCc--hHHHH-HHHHHHHhCC-CHHHHHHHHHHC
Confidence 988865554443 22322 2555566777 899999999875
No 186
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0044 Score=54.38 Aligned_cols=118 Identities=16% Similarity=0.044 Sum_probs=96.5
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------hccc--------------------
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKG----------LKIN-------------------- 52 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrA----------LaL~-------------------- 52 (192)
++.+|-+++++.-...|........+|-.|...+.+..|.++...- +.|.
T Consensus 59 ~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 59 EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc
Confidence 4667888889888889999988889999999999999887764433 2222
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 53 K--HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 53 P--~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
| +++....+.|-+++..|++++|+.-+..+++...-.|. ...++|++|+..| +|+.|++....-|.+.
T Consensus 139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-----lAYniALaHy~~~-qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-----LAYNLALAHYSSR-QYASALKHISEIIERG 208 (459)
T ss_pred cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-----hHHHHHHHHHhhh-hHHHHHHHHHHHHHhh
Confidence 5 79999999999999999999999999999987544332 4456999999998 8999999887777664
No 187
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.03 E-value=0.0013 Score=37.66 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH 54 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~ 54 (192)
++.++|-++.+.|++++|.+.++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566677777777777777777777777774
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.0053 Score=55.84 Aligned_cols=124 Identities=17% Similarity=0.102 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC------CCHHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P------~da~A~h~lahvl~~ 68 (192)
+|+++.++..-+.-|.+..++ --+++++|.++.-.|.++.|.+.|.+++.|.- -.+.....+|.++.-
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 588888888777666654322 37899999999999999999999999887652 246777899999999
Q ss_pred cCCHHHHHHHHHHhHhh----ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhC
Q 029491 69 DCCFKEAVQFMEECSST----WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELE 128 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~----~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~ 128 (192)
...++.||.+..+.+.+ ..... .....|-+|.++-.+| ..++|+...+.++....+
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriG---e~RacwSLgna~~alg-~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIG---ELRACWSLGNAFNALG-EHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 33322 3457899999999999 899999999999888653
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.99 E-value=0.0051 Score=58.80 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=93.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHhcccC
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS----------------------------LLELGQMSDAEEAAKKGLKINK 53 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~----------------------------L~e~g~~~eAe~~~rrALaL~P 53 (192)
|+...|....+|-++ .|.++..|..+|.+ ...+++|+++..+.++++++||
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 556666666777777 44444444444332 2235899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 54 HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 54 ~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
-....+..+|-+-...++...+...|.+++.+.|+.. ..|-+++-+|+..| +--+|.....+++--
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~-----eaWnNls~ayi~~~-~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA-----EAWNNLSTAYIRLK-KKKRAFRKLKEALKC 582 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch-----hhhhhhhHHHHHHh-hhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999942 24556999999998 889999999888754
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.013 Score=50.60 Aligned_cols=143 Identities=18% Similarity=0.206 Sum_probs=108.9
Q ss_pred CChHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH----Hhccc--CCCHHHHHHHHHHHHhcCCHHH
Q 029491 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKIN--KHDCWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~~~~~~laf~L~e~g~~~eAe~~~rr----ALaL~--P~da~A~h~lahvl~~~Gr~~e 74 (192)
|.+.-.++.+.+++..+ |.++....-++-+-++.|+...|+..+++ +=.|+ .+..-.+.+.+.++.-+.++.+
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 45555677788888877 78999999999999999999999999983 33333 3456678899999999999999
Q ss_pred HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCc
Q 029491 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE 153 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~ 153 (192)
+..++++.++.+|+++ .+.|+ .|++++-+| +.-.|++..+..+... |.....-..+++-++ .+-|.+...
T Consensus 271 a~r~~~~i~~~D~~~~---~a~Nn--KALcllYlg-~l~DAiK~~e~~~~~~--P~~~l~es~~~nL~t-myEL~Ys~~ 340 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNA---VANNN--KALCLLYLG-KLKDALKQLEAMVQQD--PRHYLHESVLFNLTT-MYELEYSRS 340 (366)
T ss_pred HHHHHhhccccCCCch---hhhch--HHHHHHHHH-HHHHHHHHHHHHhccC--CccchhhhHHHHHHH-HHHHHhhhh
Confidence 9999999999999865 34454 999999999 8999999999988774 432222223445555 345555443
No 191
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.95 E-value=0.0067 Score=54.37 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=96.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|..++..+++..-|.- ....+ ....-++...=++.+++.++..|++|..+.++|..+...+.+.+|-.+++
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999644333 22222 33456788888899999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
.++...|+.. .-++ +|..+..+| +.++|-+.++..+.-..
T Consensus 353 aAl~~~~s~~----~~~~--la~~~~~~g-~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 353 AALKLRPSAS----DYAE--LADALDQLG-EPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHhcCCChh----hHHH--HHHHHHHcC-ChHHHHHHHHHHHHHhc
Confidence 9999987742 1233 899999999 89999999999988754
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.92 E-value=0.011 Score=54.50 Aligned_cols=118 Identities=9% Similarity=0.039 Sum_probs=93.7
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----~A~h~lahvl~~~Gr~~eai~~ 78 (192)
....+...+.+.....|+.+.++...|-.+.-.|+.++|++.+.+|+.....-. -..+.++.++..++++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 456788888888999999999999999999999999999999999996443333 3456789999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCH-------HHHHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM-------RKVLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~-------deAl~~yd~~i~~ 125 (192)
+.+..+.+.-+.. -+..-.|.+++++| +. ++|..++.+.-.-
T Consensus 328 f~~L~~~s~WSka----~Y~Y~~a~c~~~l~-~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 328 FLRLLKESKWSKA----FYAYLAAACLLMLG-REEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhccccHHH----HHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHHHH
Confidence 9999976433222 23445899999998 78 7888888765443
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.91 E-value=0.083 Score=45.02 Aligned_cols=123 Identities=9% Similarity=0.014 Sum_probs=98.2
Q ss_pred CChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH---HHHHHHHHHh-------
Q 029491 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHALCHVLQH------- 68 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A---~h~lahvl~~------- 68 (192)
|++.+|.+.++++....|..+ .+.-+++++....++|++|+..++|=+.+.|+++.+ ..-.|-+..+
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 889999999999988888665 678999999999999999999999999999998743 3444444332
Q ss_pred -cCCHHHHHHHHHHhHhhccCCCCc-------------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 -DCCFKEAVQFMEECSSTWSSCSSF-------------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 -~Gr~~eai~~~~~a~~~~p~~~~~-------------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+....+|+.-+...+..+|++.-. +..| --..|.+|+..| .+..|...+++.+..-
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-Em~IaryY~kr~-~~~AA~nR~~~v~e~y 197 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-EMAIARYYLKRG-AYVAAINRFEEVLENY 197 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHhc-ChHHHHHHHHHHHhcc
Confidence 345678999999999999996420 1122 235889999998 9999999999999874
No 194
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.90 E-value=0.018 Score=51.72 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=74.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.......+++.+...|++|..+..+|..+..++.+.+|...++.|++..|. +..+.-+||++..+|++++|-...++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 56677788889999999999999999999999999999999999999999886 56788899999999999999999999
Q ss_pred hHhh
Q 029491 82 CSST 85 (192)
Q Consensus 82 a~~~ 85 (192)
++..
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 8844
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.86 E-value=0.016 Score=49.52 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=89.3
Q ss_pred CChHHHHHHHHhhcCCC--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 2 GRPDLCFDIIHQVLPYN--QQE----DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 2 G~~~~al~~~~ral~~~--p~~----~~~~~~laf~L~e~-g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
+++.++...+++|+... .++ +..+..+|-++++. |++++|.+.+++|+.+-..+ ......+|.++..
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 36778899999998863 222 46788889999998 99999999999999984322 2345688999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCcch--hh-hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSFMY--TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~~~--~h-~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.|++++|+..+++.....-+.+. +. .. ......+++|..| |+-.|...+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l-~~~~~~~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNL-LKYSAKEYFLKAILCHLAMG-DYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCT-TGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 99999999999998875433221 11 11 2335778999998 899999999987755
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.86 E-value=0.0085 Score=58.37 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=91.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++..|+.-+.+.+...|+-.++...-|.++...|++++|..+.+.-=.+-|+|--.+-.+-+|+..+|..+++..+|++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 57888999999999999999999999999999999999999776666667788999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCH----HHHHHHHH
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPM----RKVLEIYD 120 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~----deAl~~yd 120 (192)
+...+|.. |+--|+=.+|..-+ .| ..|+++|.
T Consensus 103 ~~~~~P~e------ell~~lFmayvR~~-~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 103 ANQKYPSE------ELLYHLFMAYVREK-SYKKQQKAALQLYK 138 (932)
T ss_pred HHhhCCcH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999883 23223333343333 33 45677775
No 197
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.016 Score=52.05 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=108.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--------------ccc------------CC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL--------------KIN------------KH 54 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrAL--------------aL~------------P~ 54 (192)
+|++.+|+..+.-+...+..++.+..++|-..--.|.|.+|+..+.+|- .+| .+
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 5899999999998888777778888899999999999999999877652 222 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCC
Q 029491 55 DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH 134 (192)
Q Consensus 55 da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~ 134 (192)
...-.-.++.+++|+--..|||+.|.+.+..+|..-. .+-.+|+++..+. -||-+-...+.-++.- | +|+.
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a-----lNVy~ALCyyKlD-Yydvsqevl~vYL~q~--p-dSti 220 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA-----LNVYMALCYYKLD-YYDVSQEVLKVYLRQF--P-DSTI 220 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-----hHHHHHHHHHhcc-hhhhHHHHHHHHHHhC--C-CcHH
Confidence 2344557888999999999999999999999988532 2334999999985 7777776666666663 3 3333
Q ss_pred hHHHHHHHHHHHHhhhcCcccchhchHHHHHHHH
Q 029491 135 PEVYLNALGLLLRVYVRGELDVFGNRLKVLADCV 168 (192)
Q Consensus 135 ~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~ 168 (192)
+..+ - ++-+||+--.-. ..+--+.|++-.
T Consensus 221 A~NL-k-acn~fRl~ngr~---ae~E~k~ladN~ 249 (557)
T KOG3785|consen 221 AKNL-K-ACNLFRLINGRT---AEDEKKELADNI 249 (557)
T ss_pred HHHH-H-HHHHhhhhccch---hHHHHHHHHhcc
Confidence 3222 2 334777754333 234445555543
No 198
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.012 Score=51.17 Aligned_cols=121 Identities=14% Similarity=-0.033 Sum_probs=66.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH------------------------------
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF------------------------------ 78 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~------------------------------ 78 (192)
+..+.+.|++.+|...+..+++.+|++..+...++.+|...|+.++|.+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44445555555555555555555555555555555555555555433222
Q ss_pred ----HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcc
Q 029491 79 ----MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 154 (192)
Q Consensus 79 ----~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~ 154 (192)
+++....+|++.. ...-+|..+...| ++++|+..+=..+.+...- .+-.-.-.|+=-+++-|..
T Consensus 221 ~~~~l~~~~aadPdd~~-----aa~~lA~~~~~~g-~~e~Ale~Ll~~l~~d~~~------~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQRRLAADPDDVE-----AALALADQLHLVG-RNEAALEHLLALLRRDRGF------EDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcccc------cCcHHHHHHHHHHHhcCCC
Confidence 2233455665432 3345888888888 8899988888888775521 1122234444445666655
Q ss_pred cchhchH
Q 029491 155 DVFGNRL 161 (192)
Q Consensus 155 ~~~~~rw 161 (192)
+|+...+
T Consensus 289 Dp~~~~~ 295 (304)
T COG3118 289 DPLVLAY 295 (304)
T ss_pred CHHHHHH
Confidence 4544443
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.011 Score=49.37 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~-----A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
.-|.-+-.+|+|++|..-|.+||++.|.-+. -+-+.|.++..++..+.||.-+.+++.+||.+. .+-. ..
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~--RR 174 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALE--RR 174 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHH--HH
Confidence 3455677899999999999999999998654 456788999999999999999999999999854 2222 25
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 102 ALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 102 Al~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|-+|-..- .|++|+.-|.+.+...
T Consensus 175 Aeayek~e-k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 175 AEAYEKME-KYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHhC
Confidence 77775565 8999999998888764
No 200
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.74 E-value=0.0072 Score=46.25 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------ccCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDC----WSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALa-------L~P~da----~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
|+..|..++-++...|+|+++...+.+||- |+.+.. -++.+.+.++..+||.+||+..++.+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 456666777777777777777777766663 333322 23444455555555555555555444
No 201
>PRK10941 hypothetical protein; Provisional
Probab=96.69 E-value=0.01 Score=50.95 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS 91 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~ 91 (192)
-.+.++=.++.+.+++++|.++.++.|.++|+|+.-+-..|-++...|++..|+.-++..++..|++|.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 456777779999999999999999999999999999999999999999999999999999999999763
No 202
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.65 E-value=0.00077 Score=59.51 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=76.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|.++.+++.+.++++++|..+..|...+-++.+.+....|++-+..|+.+||+.+..+-..+.+...+|..+++-..++.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 67788888889999999999999999999999999999999999999999999998888888888889999999999888
Q ss_pred hHhhccC
Q 029491 82 CSSTWSS 88 (192)
Q Consensus 82 a~~~~p~ 88 (192)
+..+.-+
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 8876544
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.038 Score=50.89 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=92.5
Q ss_pred CChHHHHHHHHhhcCCCC-CCH----HHHHHHHHHHH------HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Q 029491 2 GRPDLCFDIIHQVLPYNQ-QED----FIFGILAFSLL------ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p-~~~----~~~~~laf~L~------e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G 70 (192)
|+-+..++...++..... ..+ ..+..+.++.. .....++|++...+.++.-|+.+.-....|.++..+|
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g 281 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG 281 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 778888888888877332 122 11222222222 3456788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+.++|++.++++......-+. +..-..|-+|.+++.++ +|++|...+++.+..
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Q-l~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQ-LHHLCYFELAWCHMFQH-DWEEAAEYFLRLLKE 334 (468)
T ss_pred CHHHHHHHHHHhccchhhHHh-HHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhc
Confidence 999999999988843333222 23336888999999998 999999999888765
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.60 E-value=0.024 Score=48.54 Aligned_cols=119 Identities=10% Similarity=-0.040 Sum_probs=71.9
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e-~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
..+++..+.+|+...+....++...|..-.. .++.+.|..++++++..-|++..-+..-..-+...|+.+.+...++++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4567777777775545555555544444334 345555888888888888888777777777777788888888888887
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+..-|.... .-.+|=-+.-+-..-| +.+.+..++++....
T Consensus 97 i~~l~~~~~--~~~iw~~~i~fE~~~G-dl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 97 ISSLPKEKQ--SKKIWKKFIEFESKYG-DLESVRKVEKRAEEL 136 (280)
T ss_dssp CCTSSCHHH--CHHHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHhcCchhH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 765443210 0113323444455566 777777777766665
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.015 Score=49.40 Aligned_cols=86 Identities=7% Similarity=-0.023 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHH
Q 029491 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 114 (192)
Q Consensus 35 ~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~de 114 (192)
..+|+.|+.++-|||.+||+.+-=+.+.+..+....+++-.....++++++.|+. ...|+. ++.+.++.. .|++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~---vk~h~f--lg~~~l~s~-~~~e 96 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL---VKAHYF--LGQWLLQSK-GYDE 96 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---HHHHHH--HHHHHHhhc-cccH
Confidence 3478999999999999999999999999999999999999999999999999884 367876 888888876 6999
Q ss_pred HHHHHHHhhhhh
Q 029491 115 VLEIYDNHIWKE 126 (192)
Q Consensus 115 Al~~yd~~i~~~ 126 (192)
|+....++....
T Consensus 97 aI~~Lqra~sl~ 108 (284)
T KOG4642|consen 97 AIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999885543
No 206
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.58 E-value=0.0048 Score=32.77 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH 54 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~ 54 (192)
++..+|..+.+.|++++|+..+++++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4456666677777777777777777776665
No 207
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.58 E-value=0.049 Score=41.77 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=65.8
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC------c
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKH------------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS------F 92 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~------------da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~------~ 92 (192)
-..+-|-|++|.+.+++|+..... |+-.|..|+-++...||++|++...++++....+-.. -
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 345678999999999999987643 4566778888999999999999999999864333111 0
Q ss_pred chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 93 MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 93 ~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
++.-.-...|+++-.+| +.++|+..|+.+..
T Consensus 98 lWIaaVfsra~Al~~~G-r~~eA~~~fr~agE 128 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLG-RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 12112235777777898 99999999987644
No 208
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.55 E-value=0.0029 Score=53.48 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=56.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
+..+.+.|+.+.|.+.+.|||++.|+.+..|..+|...+..|+++.|.+.|+++++++|.+.
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44577889999999999999999999999999999999999999999999999999999864
No 209
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.069 Score=50.30 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=88.9
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------------------------
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------------------ 51 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL------------------------------ 51 (192)
+..++++..+. -.++++...+-..|-++...|+|++|...|+.-+.-
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 45666776666 457777888888999999999999999888776332
Q ss_pred cCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCC--cch---hhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491 52 NKH-DCWSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSS--FMY---THNWWHVALCYLEGHSPMRKVLEIYD 120 (192)
Q Consensus 52 ~P~-da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~--~~~---~h~~WhlAl~~l~~G~~~deAl~~yd 120 (192)
.|. +-...+|.+-++...|+..+|++.++.++++- ..+.. -.. .-+.-.+|..+...| +.+||..+|.
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G-qt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG-QTAEASSIYV 248 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHH
Confidence 244 55678999999999999999999999994321 11100 000 013335888888898 8999999999
Q ss_pred Hhhhhh
Q 029491 121 NHIWKE 126 (192)
Q Consensus 121 ~~i~~~ 126 (192)
..|...
T Consensus 249 ~~i~~~ 254 (652)
T KOG2376|consen 249 DIIKRN 254 (652)
T ss_pred HHHHhc
Confidence 999886
No 210
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.51 E-value=0.0019 Score=59.12 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=86.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
..++.|.+.+.+|+.++|+.+.+.++.+++....+.|..|..-+.+|++++|...-+++..|.+....|++.+|...++.
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCC
Q 029491 82 CSSTWSSCSS 91 (192)
Q Consensus 82 a~~~~p~~~~ 91 (192)
+..+-|+.+.
T Consensus 98 ~~~l~Pnd~~ 107 (476)
T KOG0376|consen 98 VKKLAPNDPD 107 (476)
T ss_pred hhhcCcCcHH
Confidence 9999999753
No 211
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.50 E-value=0.014 Score=49.23 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh 100 (192)
.+..|.-.|.-+--.|-.+-|.--+.++|+++|+-|.+..-+|--+...|+++.|.+.++..++++|... .+|.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lN-- 138 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLN-- 138 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhc--
Confidence 3555666666666677777888889999999999999999999999999999999999999999999975 46655
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|+.++-.| +|.-|.+-+-+....+
T Consensus 139 Rgi~~YY~g-R~~LAq~d~~~fYQ~D 163 (297)
T COG4785 139 RGIALYYGG-RYKLAQDDLLAFYQDD 163 (297)
T ss_pred cceeeeecC-chHhhHHHHHHHHhcC
Confidence 666666666 9999988887777664
No 212
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.39 E-value=0.041 Score=39.50 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=54.4
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491 41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (192)
Q Consensus 41 Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd 120 (192)
..+..+++++-||+|..+.+.+|-++...|++++|++.+-..++..++...- .+.-. =+.++-+ +| .-+....-|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~-~ar~~-ll~~f~~-lg-~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD-AARKR-LLDIFEL-LG-PGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC-HHHHH-HHHHHHH-H--TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc-HHHHH-HHHHHHH-cC-CCChHHHHHH
Confidence 3466789999999999999999999999999999999999999887765321 22221 1444433 35 4566777777
Q ss_pred Hhhh
Q 029491 121 NHIW 124 (192)
Q Consensus 121 ~~i~ 124 (192)
+.+.
T Consensus 83 RkL~ 86 (90)
T PF14561_consen 83 RKLA 86 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 213
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.32 E-value=0.035 Score=39.85 Aligned_cols=77 Identities=13% Similarity=-0.017 Sum_probs=60.9
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d--a~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
-++.+++.+..+|+|..+...+|-.+...|++++|.+..-..+..+|+. ..+.-.+--++...|.-..-+.-+++-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999876 7788888888888888665555555543
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.32 E-value=0.0078 Score=35.49 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKI 51 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL 51 (192)
+.++|.++...|++++|++.++++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666664443
No 215
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.29 E-value=0.011 Score=33.72 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
+.+++.+|.++..+|++++|+..++++++..|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357889999999999999999999999999874
No 216
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.026 Score=50.71 Aligned_cols=126 Identities=12% Similarity=0.068 Sum_probs=94.1
Q ss_pred CCChHHHHHHHHhhcCC--CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----------CHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY--NQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKH----------DCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~--~p~~~----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~----------da~A~h~lah 64 (192)
||.+..+++++++|+.. +-+|+ .+..-+|-......++++|.-..++|++|-.. .+-++.-++.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 35678889999998875 33444 45666777788889999999999999987632 2356667889
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
++-++|+..+|.+..+++..+--....- .++..---+|-.|-+.| +.|.|++.|+.++....
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g-d~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG-DLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHh
Confidence 9999999999999999998654332210 12222224788888998 89999999999988753
No 217
>PRK10941 hypothetical protein; Provisional
Probab=96.21 E-value=0.024 Score=48.70 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=62.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~ 69 (192)
++++.|+.++++.+...|++++-.--.|+.+.+.|.+..|..-.+.-|+..|+|+.+.--...+..+.
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 68899999999999999999999999999999999999999999999999999998877666655444
No 218
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.15 E-value=0.037 Score=52.37 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=107.9
Q ss_pred CChHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 029491 2 GRPDLCFDI-IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 2 G~~~~al~~-~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da--~A~h~lahvl~~~Gr~~eai~~ 78 (192)
|++-+++.. +-.++...|.++++|.+-+|-....|..-+|..++++|+-+-|... -+.-.+|.++...|+..+|--.
T Consensus 192 ~r~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iI 271 (886)
T KOG4507|consen 192 GRSIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVI 271 (886)
T ss_pred hhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhhe
Confidence 455555544 4458889999999999999999999999999999999999988755 4677899999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (192)
+..|+..-|...+ +..-++..+..+| +|..-+..|+.+...+ |+--...+..-...|-+-||+-
T Consensus 272 LhAA~~dA~~~t~-----n~y~l~~i~aml~-~~N~S~~~ydha~k~~--p~f~q~~~q~~~~ISC~~~L~~ 335 (886)
T KOG4507|consen 272 LHAALDDADFFTS-----NYYTLGNIYAMLG-EYNHSVLCYDHALQAR--PGFEQAIKQRKHAISCQQKLEQ 335 (886)
T ss_pred eehhccCCccccc-----cceeHHHHHHHHh-hhhhhhhhhhhhhccC--cchhHHHHHHHHHHHHHHHHHH
Confidence 9888877655432 3344888898998 8999999999777664 3222222333455666655543
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.091 Score=39.82 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=65.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccC--------CCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINK--------HDCW--------------SQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P--------~da~--------------A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
|-.....|+.+++.+.+++|+++=. ...| +...++..+...|++++++..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 4445677888999999999998762 2233 34556777888999999999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 87 p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|-+- ..|. .+-.++...| +..+|++.|++....
T Consensus 93 P~~E---~~~~--~lm~~~~~~g-~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDE---EAYR--LLMRALAAQG-RRAEALRVYERYRRR 125 (146)
T ss_dssp TT-H---HHHH--HHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CCCH---HHHH--HHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 8853 2333 3666778888 999999999877554
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.29 Score=42.64 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=78.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------------
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKK---------------------------------- 47 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rr---------------------------------- 47 (192)
|++.++...+..++..+|+.+.+...++-++.++|+.++|.+....
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~ 227 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR 227 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 7888999999999999999999999999999999999999998654
Q ss_pred HhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 48 GLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 48 ALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
.++-||+|..+-+.++.++...||.++|.+.+-..++.+-.
T Consensus 228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 13345999999999999999999999999999999998544
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.98 E-value=0.015 Score=34.19 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 58 SQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 58 A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
++.++|.++..+|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666677777777777777665533
No 222
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=0.092 Score=48.71 Aligned_cols=88 Identities=9% Similarity=-0.100 Sum_probs=82.2
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++...|++.++|||..+..+.-.+.-++-.-+.+.....|..+..||+.+=|.--.-+.-..++-++.|+.+-+...+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45788999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCC
Q 029491 82 CSSTWSSC 89 (192)
Q Consensus 82 a~~~~p~~ 89 (192)
++.-.|+.
T Consensus 167 W~~w~P~e 174 (677)
T KOG1915|consen 167 WMEWEPDE 174 (677)
T ss_pred HHcCCCcH
Confidence 99888773
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.91 E-value=0.19 Score=42.92 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~-~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA 102 (192)
++..+.-.....+..++|..++.+|+.-.+-....+-+.|..-.. .++.+-|...++..+...|.+. .+|++..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-----~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-----DFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----HHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----HHHHHHH
Confidence 444455555566669999999999997666677777777877555 4555559999999999998853 3788888
Q ss_pred HHHHhCCCCHHHHHHHHHHhhhh
Q 029491 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 103 l~~l~~G~~~deAl~~yd~~i~~ 125 (192)
-+++..| +.+.+..+|++.+..
T Consensus 78 ~~l~~~~-d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 78 DFLIKLN-DINNARALFERAISS 99 (280)
T ss_dssp HHHHHTT--HHHHHHHHHHHCCT
T ss_pred HHHHHhC-cHHHHHHHHHHHHHh
Confidence 9999998 899999999999764
No 224
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.78 E-value=0.0042 Score=54.96 Aligned_cols=87 Identities=7% Similarity=-0.131 Sum_probs=73.3
Q ss_pred HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 029491 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 113 (192)
Q Consensus 34 e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d 113 (192)
-.|.++.|++.+-+|+.+||..+..+...+.|+...++...+|+-+..++.++|+.. ...-+ .+.++..+| +++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa---~~ykf--rg~A~rllg-~~e 199 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA---KGYKF--RGYAERLLG-NWE 199 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc---cccch--hhHHHHHhh-chH
Confidence 467899999999999999999999999999999999999999999999999999964 22233 455566667 788
Q ss_pred HHHHHHHHhhhhh
Q 029491 114 KVLEIYDNHIWKE 126 (192)
Q Consensus 114 eAl~~yd~~i~~~ 126 (192)
++-..++.+...+
T Consensus 200 ~aa~dl~~a~kld 212 (377)
T KOG1308|consen 200 EAAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHHhcc
Confidence 8888877777664
No 225
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.3 Score=42.22 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=94.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--CHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--CFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G--r~~eai~~~ 79 (192)
|++++|++...+ .+.-.+..+--+++....+++-|+...++...++-+-.-..-+-++|-..+| ...+|.-.|
T Consensus 122 ~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyif 196 (299)
T KOG3081|consen 122 GDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIF 196 (299)
T ss_pred CChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445555554443 2222344444457777888888888888888888776655566666666655 466777778
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhc
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~ 159 (192)
++--...|..+. .-+ +.|.+++.+| +|+||..+.+.++... + + .+.. -++|.-.-.+.|.+.+|.+
T Consensus 197 eE~s~k~~~T~~---lln--G~Av~~l~~~-~~eeAe~lL~eaL~kd--~--~-dpet---L~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 197 EELSEKTPPTPL---LLN--GQAVCHLQLG-RYEEAESLLEEALDKD--A--K-DPET---LANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHhcccCCChH---HHc--cHHHHHHHhc-CHHHHHHHHHHHHhcc--C--C-CHHH---HHHHHHHHHHhCCChHHHH
Confidence 887775555432 223 5999999999 9999999999999885 2 1 2333 3455556677888766666
Q ss_pred hH
Q 029491 160 RL 161 (192)
Q Consensus 160 rw 161 (192)
|-
T Consensus 263 r~ 264 (299)
T KOG3081|consen 263 RN 264 (299)
T ss_pred HH
Confidence 64
No 226
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.18 Score=41.53 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh-ccCCCCcchhhhHHH
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSST-WSSCSSFMYTHNWWH 100 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~-~p~~~~~~~~h~~Wh 100 (192)
.-.+|-+..|+|++++|+...+.++..-.+. +-+--.++.|+..+|.+++|+..++.-... |.. +..+.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~----~~~el--- 164 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA----IVAEL--- 164 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH----HHHHH---
Confidence 3456778899999999999999999865553 356678999999999999999999876533 211 12333
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|-.++..| +-++|...|.+++...
T Consensus 165 rGDill~kg-~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 165 RGDILLAKG-DKQEARAAYEKALESD 189 (207)
T ss_pred hhhHHHHcC-chHHHHHHHHHHHHcc
Confidence 678889999 8999999999999874
No 227
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.65 E-value=0.023 Score=29.92 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 57 ~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
.++..+|.++..+|++++|+..+++++...|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45678888888888888888888888877664
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.044 Score=47.45 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=75.2
Q ss_pred CChHHHHHHHHhhcCC----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPY----N--QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75 (192)
Q Consensus 2 G~~~~al~~~~ral~~----~--p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ea 75 (192)
||...|-..++++-.. + ...-.++-+.++++.-.++|.+|-..+.+.+..+|.++.+..+.|-++.+.|+..+|
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 6666676666654332 1 234577888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhccCC
Q 029491 76 VQFMEECSSTWSSC 89 (192)
Q Consensus 76 i~~~~~a~~~~p~~ 89 (192)
+..++++++..|..
T Consensus 306 iK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHhccCCcc
Confidence 99999999999883
No 229
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.042 Score=47.22 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
-...++=..+.++++++.|.....|.+.++|.|+.-+-..|+++...|...-|+.-++..++.-|+.+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 44455556889999999999999999999999999999999999999999999999999999988864
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=0.29 Score=44.00 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=86.6
Q ss_pred CChHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC
Q 029491 2 GRPDLCFDIIHQVL-PYNQQEDFIFGILAFSLLE---------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (192)
Q Consensus 2 G~~~~al~~~~ral-~~~p~~~~~~~~laf~L~e---------~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr 71 (192)
|+.++|++.+..++ +..+.++..++++|-++-. ...+++|++.|++|.+++| |-+.=-|++..+...|.
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGH 274 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCC
Confidence 88999999999954 4677899999999987643 2357889999999999995 66777888888888887
Q ss_pred HHHHHHHHHHhH--------hhccCCCCcchhhhHHHHHHH---HHhCCCCHHHHHHHHHHhhhhh
Q 029491 72 FKEAVQFMEECS--------STWSSCSSFMYTHNWWHVALC---YLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 72 ~~eai~~~~~a~--------~~~p~~~~~~~~h~~WhlAl~---~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+...-+++.. +.....+ .-.+|-.|-+ .+-.| ++++|.+.+++.+...
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~----~~dYWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEK----MQDYWDVATLLEASVLAG-DYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccc----cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcC
Confidence 555543333322 2221111 2267765543 35577 8999999999999773
No 231
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.45 E-value=0.033 Score=32.72 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 58 SQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 58 A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+++++|.++..+|++++|+.++++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 45555555555555555555555555443
No 232
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.44 E-value=0.031 Score=31.29 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 58 SQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 58 A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
|+..+|.++..+|++++|+..+++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555555443
No 233
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.42 E-value=0.046 Score=35.54 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la 63 (192)
.+..+|.+....|+|++|....++.|.++|+|..|.--..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3567899999999999999999999999999998765443
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.38 E-value=0.033 Score=31.15 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d 55 (192)
+++..+|.++.+.|++++|.+.+++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 357789999999999999999999999999985
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.35 E-value=0.24 Score=44.56 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=80.1
Q ss_pred ChHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HhcccCCCHHHHHHHHHHHHh------
Q 029491 3 RPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLE---LGQMSDAEEAAKK-GLKINKHDCWSQHALCHVLQH------ 68 (192)
Q Consensus 3 ~~~~al~~~~ral~~----~p~~~~~~~~laf~L~e---~g~~~eAe~~~rr-ALaL~P~da~A~h~lahvl~~------ 68 (192)
+++.|...++..-+. -++.+.+...+||+|-. .|+.++|+..... ...-++.++..+--+|-++-.
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~ 235 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN 235 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC
Confidence 567788887765444 45678899999999999 9999999999999 555677899988888887632
Q ss_pred ---cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 029491 69 ---DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 113 (192)
Q Consensus 69 ---~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d 113 (192)
....++||.+|.++.+..|+. |..=|+|..+...|.+++
T Consensus 236 ~~d~~~ldkAi~~Y~kgFe~~~~~------Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 236 FTDRESLDKAIEWYRKGFEIEPDY------YSGINAATLLMLAGHDFE 277 (374)
T ss_pred ccchHHHHHHHHHHHHHHcCCccc------cchHHHHHHHHHcCCccc
Confidence 335789999999999998663 234457777766673333
No 236
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.3 Score=42.16 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
|.-.++.--...|-.+..+.-.|.+.+.+|+|++|+...+.||.-+|++|..+.|+-..-.++|...|...-+-.-+..
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3334444444456667778888899999999999999999999999999999999999999999999988776666654
No 237
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.26 E-value=0.025 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 57 WSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 57 ~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+++.++|.++..+|++++|.+.++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344444555555555555544443
No 238
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.20 E-value=0.038 Score=48.82 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=53.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv 65 (192)
|..+.|...++-|+.++|+++.++.-+|-..++.++.-+|-.++-+||.+.|.+..|+.+.+.+
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 6777888888888888888888888888888888888888888888888888888888776644
No 239
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.18 E-value=0.05 Score=31.90 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=15.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|.++...| ++++|..++++++...
T Consensus 8 la~~~~~~g-~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 8 LANAYRAQG-RYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHCT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-hcchhhHHHHHHHHHH
Confidence 666666666 6666666666666554
No 240
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.09 E-value=0.039 Score=46.74 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=53.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW 57 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~ 57 (192)
|+.+.+.+.+.|++++.|+...-+.-+|+..+..|+++.|.+.+++.|+++|.|--
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 78889999999999999999999999999999999999999999999999998753
No 241
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.82 E-value=1 Score=35.82 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=69.7
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~ 112 (192)
...++.++++.+....-.|.|+.+.....-|..+..+|++.||+..+++....-|..+ .+-.- +|+|+..+|
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kAL--lA~CL~~~~--- 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKAL--LALCLYALG--- 92 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHHH--HHHHHHHcC---
Confidence 4567999999999999999999999999999999999999999999999877766543 22222 788887877
Q ss_pred HHHHHHHHHhhhh
Q 029491 113 RKVLEIYDNHIWK 125 (192)
Q Consensus 113 deAl~~yd~~i~~ 125 (192)
|..|+.|-..+-.
T Consensus 93 D~~Wr~~A~evle 105 (160)
T PF09613_consen 93 DPSWRRYADEVLE 105 (160)
T ss_pred ChHHHHHHHHHHh
Confidence 4779988775554
No 242
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.80 E-value=0.27 Score=39.14 Aligned_cols=72 Identities=11% Similarity=-0.052 Sum_probs=62.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ 73 (192)
++.+++...+...--+.|..+.+...-|..+..+|++.+|+...|...+-.|..+.+-.-++.++..+|+++
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 456666666665555789999999999999999999999999999999999999999999999998888764
No 243
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.75 E-value=0.6 Score=43.52 Aligned_cols=116 Identities=9% Similarity=-0.019 Sum_probs=86.2
Q ss_pred ChHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQ----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p----~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
+.+..++.++.++.+.| ..+-.+.|+|--...+-++..|....-.|+.+.|.+-- .-..-..-...+.++.....
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKL 459 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHH
Confidence 45667778888888777 44666777777777788888888888888888888652 22222334466888888888
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|++.+.-.|.+ +..|-..|-+-..+| +.|.|.++|+-+|..
T Consensus 460 YEkfle~~Pe~-----c~~W~kyaElE~~Lg-dtdRaRaifelAi~q 500 (677)
T KOG1915|consen 460 YEKFLEFSPEN-----CYAWSKYAELETSLG-DTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHhcChHh-----hHHHHHHHHHHHHhh-hHHHHHHHHHHHhcC
Confidence 88888888773 335656777777788 899999999888877
No 244
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.71 E-value=0.046 Score=29.90 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKK 47 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rr 47 (192)
|.++.++|.++..+|++++|+..+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 46788999999999999999998874
No 245
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.12 Score=45.80 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=68.1
Q ss_pred ChHHHHHHHHhhcCCC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYN---QQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 3 ~~~~al~~~~ral~~~---p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
++..|..++...|... |+ ++..+++.|-+....|.|..|+.-+.+|+.++|.+.-|...=|-++....++++|+.|
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNW 175 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5667788888877754 32 3577788888888888888888888888888888888888888888888888888888
Q ss_pred HHHhHhhccC
Q 029491 79 MEECSSTWSS 88 (192)
Q Consensus 79 ~~~a~~~~p~ 88 (192)
+++-+.+...
T Consensus 176 ~ee~~~~d~e 185 (390)
T KOG0551|consen 176 CEEGLQIDDE 185 (390)
T ss_pred HhhhhhhhHH
Confidence 8887765433
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.69 E-value=0.51 Score=40.30 Aligned_cols=104 Identities=9% Similarity=0.088 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
.+..+..-|......|++++|...+++.....|.++| +.-.++-++.+.|++++|+...++-+++.|.+++. ...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~--dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA--DYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh--hHH
Confidence 3567778888899999999999999999999999886 56778999999999999999999999999998873 233
Q ss_pred HHHHHHHHHhCCC-------CHHHHHHHHHHhhhhh
Q 029491 98 WWHVALCYLEGHS-------PMRKVLEIYDNHIWKE 126 (192)
Q Consensus 98 ~WhlAl~~l~~G~-------~~deAl~~yd~~i~~~ 126 (192)
..-.+++++..=+ ...+|..-+.+-|..-
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 3346666554211 2346667777777775
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.66 E-value=0.94 Score=41.33 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=56.8
Q ss_pred CChHHHHHHHHhhcCC---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491 2 GRPDLCFDIIHQVLPY---NQQ-----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~---~p~-----~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ 73 (192)
|+++.++..+.+.... .++ -+..+...+..+... +...|...+.+++.|.|+.+-+...-+..+...|+..
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh
Confidence 5566666655543331 222 123334444444333 3555666777888888998888888889999999999
Q ss_pred HHHHHHHHhHhhccC
Q 029491 74 EAVQFMEECSSTWSS 88 (192)
Q Consensus 74 eai~~~~~a~~~~p~ 88 (192)
+|-..+|.+-+..|+
T Consensus 281 Kg~~ilE~aWK~ePH 295 (531)
T COG3898 281 KGSKILETAWKAEPH 295 (531)
T ss_pred hhhhHHHHHHhcCCC
Confidence 999998888777666
No 248
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.88 E-value=0.21 Score=44.31 Aligned_cols=61 Identities=11% Similarity=-0.047 Sum_probs=56.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
|--....|..++|...++.||+++|+++.++..+|...+|..+.-+|-..|-+|+.+.|.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 4445678999999999999999999999999999999999999999999999999998874
No 249
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.84 E-value=0.74 Score=47.53 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
..++|-..+++-+....+..-++.+++-.|..+++-++|.+...|||.--|. +....---|...+..|+.+.|...++
T Consensus 1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 3456666666666666677888899999999999999999999999999998 88888888999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
..+..+|.-. ..|--+.-.-+..| +.+-+..+|++.|....
T Consensus 1625 gll~ayPKRt-----DlW~VYid~eik~~-~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1625 GLLSAYPKRT-----DLWSVYIDMEIKHG-DIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHhhCccch-----hHHHHHHHHHHccC-CHHHHHHHHHHHHhcCC
Confidence 9999998843 35533444455677 78899999999998864
No 250
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=1.4 Score=38.27 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=98.2
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK-EAVQFME 80 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~-eai~~~~ 80 (192)
+.++|++..+-++.++|.+-.++...=.+|.+.+ ++.+=.+...+.++-||.|-..+|-.-.+.++.|.+. .-+++..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 4578888999999999999888877777888777 7777788889999999999999999999999999998 8899999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..++....+ .|.|-|.-=+...-+ .++.-++..+..|..+
T Consensus 138 ~~l~~DaKN-----YHaWshRqW~~r~F~-~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 138 LMLDDDAKN-----YHAWSHRQWVLRFFK-DYEDELAYADELLEED 177 (318)
T ss_pred HHHhccccc-----hhhhHHHHHHHHHHh-hHHHHHHHHHHHHHHh
Confidence 999976663 566666555556667 6999898888877764
No 251
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.71 E-value=0.22 Score=46.84 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=76.3
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
...++..+.+++...|+..+.+.+.|-+++..+ +.-.|..-+-.|+.+||-.--||..|+.+|.+.+|..||+.+..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 456778888999999999999999999998754 55568888999999999999999999999999999999999999
Q ss_pred HhHhhccC
Q 029491 81 ECSSTWSS 88 (192)
Q Consensus 81 ~a~~~~p~ 88 (192)
...-..|.
T Consensus 470 alq~~~Pt 477 (758)
T KOG1310|consen 470 ALQMSFPT 477 (758)
T ss_pred HHhhcCch
Confidence 88888775
No 252
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.69 E-value=0.15 Score=46.87 Aligned_cols=111 Identities=7% Similarity=-0.088 Sum_probs=86.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~ 108 (192)
+......+.|+.|...|-+|+.|+||.+.-..+.+-++...+.+.+|+.-..+++++.|... .+.. --|.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~---K~Y~--rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI---KAYV--RRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh---heee--eccHHHHhH
Confidence 44455678999999999999999999999999999999999999999999999999998854 2222 267778888
Q ss_pred CCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491 109 HSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (192)
Q Consensus 109 G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (192)
| .+-+|+..|+...... | +-+...-.++-+..+=+.
T Consensus 86 ~-~~~~A~~~l~~~~~l~--P-nd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 86 G-EFKKALLDLEKVKKLA--P-NDPDATRKIDECNKIVSE 121 (476)
T ss_pred H-HHHHHHHHHHHhhhcC--c-CcHHHHHHHHHHHHHHHH
Confidence 7 8999999998766553 3 222234445666655544
No 253
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.51 Score=42.61 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=87.4
Q ss_pred ChHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++..|+...+-.+-.+.+ .....--+|+..-..|+|++|...+.-+..-+--++....+++-++...|...||....++
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666654432 2355566788899999999999999999887777888899999999999999999999888
Q ss_pred hHhhccCCCC--------------cchhhh--------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSS--------------FMYTHN--------WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~--------------~~~~h~--------~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+-.. |-+.. .+..|. ..-+|-.++..- .|.+|+.+|.+.+...
T Consensus 117 a~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 117 APKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDN 181 (557)
T ss_pred CCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcC
Confidence 7521 10000 011111 112666677765 8999999999888763
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.57 E-value=0.74 Score=42.94 Aligned_cols=85 Identities=2% Similarity=-0.220 Sum_probs=73.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHhh
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFMEECSST 85 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr-~~eai~~~~~a~~~ 85 (192)
-...+++|+...+.|.-.+.++.--....+-+.+--..+.++|..+|++|..|--.|-=.+..++ ++.+.+.+.+.++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 45678889998998988887776555566668888899999999999999999988888888887 99999999999999
Q ss_pred ccCCCC
Q 029491 86 WSSCSS 91 (192)
Q Consensus 86 ~p~~~~ 91 (192)
+|++|.
T Consensus 170 npdsp~ 175 (568)
T KOG2396|consen 170 NPDSPK 175 (568)
T ss_pred CCCChH
Confidence 999874
No 255
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.51 E-value=0.11 Score=47.47 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCChHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHh------cccCCCHHHHHHHHHHHHhcC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGL------KINKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~----~~~~~~laf~L~e~g~~~eAe~~~rrAL------aL~P~da~A~h~lahvl~~~G 70 (192)
+|+.....+.++.|+..-.+| +..++.+|.++...++|++|.+.-..=| .=.-..+-+..++|.++-+.|
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G 109 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKG 109 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhc
Confidence 588888999999999986655 5778899999999999999998644333 333456778889999999999
Q ss_pred CHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCC
Q 029491 71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGH 109 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G 109 (192)
+++||+-++.+.+..--..+. +......+++|..|-+.|
T Consensus 110 ~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 110 AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 999999999998854322111 123344556777776655
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.47 E-value=2.2 Score=33.73 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=69.2
Q ss_pred HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH
Q 029491 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 113 (192)
Q Consensus 34 e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d 113 (192)
..++.++++.+....=-|.|+.+....--|..+...|+..||+..+++..+.-+..| .+-.- +|.|+..+| |
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p---~~kAL--~A~CL~al~---D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP---YGKAL--LALCLNAKG---D 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch---HHHHH--HHHHHHhcC---C
Confidence 488999999999999999999999999999999999999999999999887765533 12222 777877877 4
Q ss_pred HHHHHHHHhhhh
Q 029491 114 KVLEIYDNHIWK 125 (192)
Q Consensus 114 eAl~~yd~~i~~ 125 (192)
..|+.|-..+-.
T Consensus 94 p~Wr~~A~~~le 105 (153)
T TIGR02561 94 AEWHVHADEVLA 105 (153)
T ss_pred hHHHHHHHHHHH
Confidence 778888776665
No 257
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.92 E-value=5.1 Score=34.94 Aligned_cols=122 Identities=8% Similarity=-0.011 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH---DCCFKEAVQFMEE 81 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~---~Gr~~eai~~~~~ 81 (192)
+.-+..++|||..+|++...+-.+=-...+...-++-.+..++++..+|+++..+...-..... ...+.+-...|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4567789999999999988877776666777788888899999999999999887665544443 2356788888888
Q ss_pred hHhhccCCCC-------------cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 82 CSSTWSSCSS-------------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 82 a~~~~p~~~~-------------~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
+++.-..... ....++.++++.+..+.| -.+.|++++...+.-..
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG-~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG-YTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC-chHHHHHHHHHHHHHHc
Confidence 7743222110 012346778999999999 99999999988887753
No 258
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.77 Score=39.55 Aligned_cols=89 Identities=11% Similarity=-0.028 Sum_probs=76.8
Q ss_pred CCChHHHHHHHHhhcCC--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY--------NQQED----------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL 62 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~----------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l 62 (192)
.|++.+|.+.++.|+.. .|.++ -.+.+++-.+...|+|=++++.+-..|...|++.-|++..
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frR 270 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRR 270 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 37788888887776642 46554 3567888899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 63 CHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 63 ahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
|-++..-=+.+||.+-+..++++.|.-
T Consensus 271 akAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 271 AKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999998773
No 259
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.65 E-value=0.5 Score=33.65 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHhcccCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 33 LELGQMSDAEEAAKKGLKINKHD---------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P~d---------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
...|+|.+|.+...+.+...... ..+..++|-+....|++++|+..+++++++-..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46788888877777776654332 345566666666667777776666666655443
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.43 E-value=3.3 Score=38.48 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc---------------------------------------ccCCCHHHHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLK---------------------------------------INKHDCWSQHALC 63 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALa---------------------------------------L~P~da~A~h~la 63 (192)
+.+..-||+|..++++.+|++.+-|... -.|+.+|..--.|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4556667777777777777776554332 1299999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhh---------hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 64 HVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTH---------NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 64 hvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h---------~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+.+.++.+.+|+..+..+...-.+..+ .|... .--|.|.++++.| +|+|+..+..+.+..-
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 9999999999999999888754222111 01111 1227899999999 9999999998887664
No 261
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.39 E-value=0.5 Score=45.02 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
.|+...|..+.++|+-..|... .-..++|.++...|-.-.|-....++|+++-..|-.+..+|.++....+.+.|+..+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 3788889999999999998655 345788999999998899999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCC
Q 029491 80 EECSSTWSSCS 90 (192)
Q Consensus 80 ~~a~~~~p~~~ 90 (192)
++|+...|.++
T Consensus 700 ~~a~~~~~~~~ 710 (886)
T KOG4507|consen 700 RQALKLTTKCP 710 (886)
T ss_pred HHHHhcCCCCh
Confidence 99999999975
No 262
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.90 E-value=0.35 Score=42.87 Aligned_cols=79 Identities=6% Similarity=-0.104 Sum_probs=70.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-LCHVLQHDCCFKEAVQFMEECSSTWSSCSS 91 (192)
Q Consensus 13 ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~-lahvl~~~Gr~~eai~~~~~a~~~~p~~~~ 91 (192)
|+.-..|+|+-.+.+++.--...|-|.+--..+-++|..+|+|+..|-. .+|-+..-++++.+.+.+.+.+|.+|+.|-
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3444568999999999887778889999999999999999999998877 889999999999999999999999999764
No 263
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.65 E-value=1.2 Score=35.24 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=72.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
++++++...+...--+.|+.+.+...-|..+...|++++|....|+..+-.|+.+.+..-++.++..+|+++
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~-------- 95 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE-------- 95 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH--------
Confidence 345555555554444678888888889999999999999999999999999999999888888888877653
Q ss_pred hHhhccCCCCcchhhhHHH-HHHHHHhCCCCHHHHHHHHHHhh
Q 029491 82 CSSTWSSCSSFMYTHNWWH-VALCYLEGHSPMRKVLEIYDNHI 123 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~Wh-lAl~~l~~G~~~deAl~~yd~~i 123 (192)
|| .|...++.| .-.+++.+.+.-.
T Consensus 96 -----------------Wr~~A~~~le~~-~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 -----------------WHVHADEVLARD-ADADAVALVRALL 120 (153)
T ss_pred -----------------HHHHHHHHHHhC-CCHhHHHHHHHHh
Confidence 22 344456766 5678887775544
No 264
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.54 E-value=0.56 Score=40.35 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ 67 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~ 67 (192)
++.+.|+.+++|.+.++|++++-.--.|.++.+.|.+.-|.+-..+.++..|+++.+-....+...
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999988776666554
No 265
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.40 E-value=1.9 Score=42.63 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH 54 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~ 54 (192)
+|+.+++..+.+..-..-++|-..+..+-+++.+.|++++|..+++||+.-+|+
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 588999997666555567788899999999999999999999999999999999
No 266
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.30 E-value=0.98 Score=33.85 Aligned_cols=64 Identities=11% Similarity=0.264 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQ-----------MSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~-----------~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
.|++..|+..++..+...+++. ..|...|.++.+... +-.+.+++.++..|.|+.+..++.+|.
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 3677777777777777665443 555555655543221 122667777777777776444444433
No 267
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.99 E-value=5.3 Score=34.82 Aligned_cols=111 Identities=11% Similarity=-0.037 Sum_probs=80.8
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 10 IIHQVLPYNQQEDFIFGILAFSLLELG------------QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 10 ~~~ral~~~p~~~~~~~~laf~L~e~g------------~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
.+.+.+..+|.|...+--+.--..+.- -.+.-...+++||+.||++..-+-.+-.........++-..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 466778888988766655543222221 24567788999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHH---HhCCCCHHHHHHHHHHhhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCY---LEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~---l~~G~~~deAl~~yd~~i~~~ 126 (192)
-.++.+..+|.+.. .|..+=.+. ...- .+++....|.+++..-
T Consensus 87 ~we~~l~~~~~~~~-----LW~~yL~~~q~~~~~f-~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 87 KWEELLFKNPGSPE-----LWREYLDFRQSNFASF-TVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHCCCChH-----HHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHH
Confidence 99999999888543 443222211 1222 5889999999988773
No 268
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=1.9 Score=40.89 Aligned_cols=80 Identities=14% Similarity=-0.101 Sum_probs=36.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcccCCCHHHHHHH------HHHHHhcCCHHHHHHHHHH
Q 029491 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSD-AEEAAKKGLKINKHDCWSQHAL------CHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e-Ae~~~rrALaL~P~da~A~h~l------ahvl~~~Gr~~eai~~~~~ 81 (192)
-....++..+|+++-+..+++.+++..|..-. +......+..+.|++.....-+ +..+...|+.+|+...+++
T Consensus 88 ~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 167 (620)
T COG3914 88 LAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER 167 (620)
T ss_pred HHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33444444444444444455444444442222 2333333444555554444444 4444444444554444444
Q ss_pred hHhhccC
Q 029491 82 CSSTWSS 88 (192)
Q Consensus 82 a~~~~p~ 88 (192)
+.+..|.
T Consensus 168 ~~d~~p~ 174 (620)
T COG3914 168 AVDLLPK 174 (620)
T ss_pred HHHhhhh
Confidence 4444444
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.39 E-value=2 Score=42.43 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=71.4
Q ss_pred CChHHHHHHHHhhcCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-----HHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQ---------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQ 67 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~---------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-----A~h~lahvl~ 67 (192)
++++++-+.+.++-...|. .+.+....|.+....|++++|++.+++++..=|.+.+ +.-++|.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 4677777777777665543 3567778888999999999999999999999888765 5667888999
Q ss_pred hcCCHHHHHHHHHHhHhhccC
Q 029491 68 HDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~ 88 (192)
-+|+.++|...+.++.+..-.
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHH
Confidence 999999999999999987433
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.31 E-value=2.5 Score=38.63 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSL--LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L--~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
|++++++.-++--+ -+|+ --.+|..|.-+ ...|..+.|...+++|-+..|+-+||.-+.-...+..|+.++|+...
T Consensus 134 G~~~~Ar~kfeAMl-~dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 134 GDYEDARKKFEAML-DDPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred CchHHHHHHHHHHh-cChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 66666666665322 2332 24456666655 45789999999999999999999999999999999999999999999
Q ss_pred HHhHh
Q 029491 80 EECSS 84 (192)
Q Consensus 80 ~~a~~ 84 (192)
++...
T Consensus 212 d~~~~ 216 (531)
T COG3898 212 DAQRA 216 (531)
T ss_pred HHHHH
Confidence 87663
No 271
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=89.92 E-value=1.4 Score=39.33 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Q 029491 6 LCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (192)
Q Consensus 6 ~al~~~~ral~~--~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl 66 (192)
.++..++..... -.++..+|+..|-.|...|+.+||.+.|+||++|.++.+...+-..+.=
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 345555544443 3467788999999999999999999999999999999988776665543
No 272
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=1.7 Score=38.73 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da----~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA 102 (192)
-.|.-+....+|..|+..|-.+|+-+-.|+ --+.|.|-+....|++..+|.-+.+++...|.. .-..|--|
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-----~Ka~~R~A 160 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-----LKAYIRGA 160 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-----hhhhhhhh
Confidence 346667778899999999999999875554 567899999999999999999999999999884 23667799
Q ss_pred HHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 103 LCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 103 l~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+++++. ++++|+.+.+..+...
T Consensus 161 kc~~eLe-~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELE-RFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHH-HHHHHHHHHhhhhhhh
Confidence 9999998 8999999988776653
No 273
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.78 E-value=1 Score=26.75 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCHHHHHHH--HHHHhcccCCC
Q 029491 27 ILAFSLLELGQMSDAEEA--AKKGLKINKHD 55 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~--~rrALaL~P~d 55 (192)
-+|..+...|++++|+.. ++-+..++|.|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 346667777777777777 55676666654
No 274
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=2.6 Score=37.46 Aligned_cols=85 Identities=12% Similarity=-0.019 Sum_probs=64.9
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 110 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~ 110 (192)
.|..-.+|+.|+++..--.+.+|.+--++..+||+++..-++.+|...|++.-.+.|... ....+ .|..++..|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~---qYrlY--~AQSLY~A~- 92 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE---QYRLY--QAQSLYKAC- 92 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH---HHHHH--HHHHHHHhc-
Confidence 356677888888888888888888888888888888888888888888888888887743 22233 566666777
Q ss_pred CHHHHHHHHHH
Q 029491 111 PMRKVLEIYDN 121 (192)
Q Consensus 111 ~~deAl~~yd~ 121 (192)
.+..|++....
T Consensus 93 i~ADALrV~~~ 103 (459)
T KOG4340|consen 93 IYADALRVAFL 103 (459)
T ss_pred ccHHHHHHHHH
Confidence 78887776644
No 275
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.69 E-value=1.7 Score=27.06 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHH
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (192)
.|+|-.|++.| +++.|..+.+..+... .......|-+||=
T Consensus 3 LdLA~ayie~G-d~e~Ar~lL~evl~~~-------~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMG-DLEGARELLEEVIEEG-------DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcC-ChHHHHHHHHHHHHcC-------CHHHHHHHHHHHh
Confidence 36999999999 9999999999999542 1344556666653
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.64 E-value=4.1 Score=28.85 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=45.0
Q ss_pred HhcCCHHHHHHHHHHhHhhccCCCCcc----hhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 67 QHDCCFKEAVQFMEECSSTWSSCSSFM----YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 67 ~~~Gr~~eai~~~~~a~~~~p~~~~~~----~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
...|++.+|++.+.+..+.-....... .....-++|..+...| ++++|+..++++|..-.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 467999999999988886655543210 1233456888899999 99999999999998853
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.33 E-value=4.6 Score=33.41 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=65.5
Q ss_pred CChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH---HHHHHHHHHhcCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHALCHVLQHDCCFKEA 75 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A---~h~lahvl~~~Gr~~ea 75 (192)
|++++|......++..-.|. +.+--.+|-++.+.|.+|+|..... -.-++.|+ .+..|.++..+|+-++|
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~----t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD----TIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 67888888888888654443 4556678889999999999887643 34444444 58899999999999999
Q ss_pred HHHHHHhHhhccC
Q 029491 76 VQFMEECSSTWSS 88 (192)
Q Consensus 76 i~~~~~a~~~~p~ 88 (192)
++.|++++...++
T Consensus 179 r~ay~kAl~~~~s 191 (207)
T COG2976 179 RAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHccCC
Confidence 9999999988754
No 278
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=7.7 Score=36.94 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=81.6
Q ss_pred HHhhcCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hHhhcc
Q 029491 11 IHQVLPYNQQEDFIFGIL--AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE-CSSTWS 87 (192)
Q Consensus 11 ~~ral~~~p~~~~~~~~l--af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~-a~~~~p 87 (192)
...-++.+|.++.++.+. +..+...+....+.-..+.++..||+++-++.+++.+++..|....++.-+.+ +...-|
T Consensus 54 ~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~ 133 (620)
T COG3914 54 LLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSP 133 (620)
T ss_pred HHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence 333445678888776554 66667788888899999999999999999999999999999888777666555 888877
Q ss_pred CCCCcchhhh--HHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 88 SCSSFMYTHN--WWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 88 ~~~~~~~~h~--~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++..+ ..|. ...++-..-.+| +.+++.....+.+..
T Consensus 134 ~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~l~~~~d~ 171 (620)
T COG3914 134 DNAEF-LGHLIRFYQLGRYLKLLG-RTAEAELALERAVDL 171 (620)
T ss_pred chHHH-HhhHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 75432 2331 111355555666 777777776666655
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.19 E-value=4.7 Score=36.67 Aligned_cols=102 Identities=11% Similarity=-0.056 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC--CCCcchh
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSS--CSSFMYT 95 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-----~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~--~~~~~~~ 95 (192)
.++-+++-+.+..-++.+++.....-+++-..++ .++-.++.++.-.|.++.+++.+++|++.--. ++. +..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~-LEl 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM-LEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce-eee
Confidence 4455666666666677777777777777765554 67788888888888888888888888864322 222 233
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 96 HNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 96 h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+.--++-.+-.+. |+++++-.-.++....
T Consensus 163 qvcv~Lgslf~~l~-D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLK-DYEKALFFPCKAAELV 192 (518)
T ss_pred ehhhhHHHHHHHHH-hhhHHhhhhHhHHHHH
Confidence 34434666666666 7888887766666653
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=8.7 Score=34.67 Aligned_cols=114 Identities=9% Similarity=-0.032 Sum_probs=79.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-cCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHD---CWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL-~P~d---a~A~h~lahvl~~~Gr~~eai~ 77 (192)
|.+.+|-..-.+.|...|.|-.+...--.++--+|+.+.-....++.+-- ||+- .+.+--.+-.+++.|-.++|..
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 56666666677777778877655544444666788888888888888877 7776 6777788888888888888888
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHH
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~ 121 (192)
..+++++++|.+. ++|- -.|..+-..| ++.|+.+...+
T Consensus 197 ~A~ralqiN~~D~---Wa~H--a~aHVlem~~-r~Keg~eFM~~ 234 (491)
T KOG2610|consen 197 QADRALQINRFDC---WASH--AKAHVLEMNG-RHKEGKEFMYK 234 (491)
T ss_pred HHHhhccCCCcch---HHHH--HHHHHHHhcc-hhhhHHHHHHh
Confidence 8888888887742 2221 1333333345 88888876533
No 281
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.46 E-value=6.8 Score=35.75 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH----HHHHHH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----KEAVQF 78 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~--~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~----~eai~~ 78 (192)
++-+..+..++..+|++-.++.....+|..++. +..=.+.+.++|.+||.|-.++|-.=.|..+.-+. .+=+++
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 456777888999999999999999999998884 57788899999999999999999999999888876 677889
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~ 107 (192)
.++.+..++.+ .| .||.=...+.
T Consensus 172 tt~~I~~nfSN-----Ys-aWhyRs~lL~ 194 (421)
T KOG0529|consen 172 TTKLINDNFSN-----YS-AWHYRSLLLS 194 (421)
T ss_pred HHHHHhccchh-----hh-HHHHHHHHHH
Confidence 99999886663 23 4555444454
No 282
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.38 E-value=8.2 Score=34.66 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=74.6
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHHhccc-----
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL--------------------------GQMSDAEEAAKKGLKIN----- 52 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~--------------------------g~~~eAe~~~rrALaL~----- 52 (192)
.+|+++.-+-.+.+-|+.|.++|.++..+... +-.+++.....||+..+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 35667766666667888888888887765441 22455666777777665
Q ss_pred ----------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 53 ----------------------------------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 53 ----------------------------------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
-.+|-.--|.+.++.|.-=++.|++..+..... |...++...|.
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~- 369 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHA- 369 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHH-
Confidence 222333345556666666666777666654432 33333212222
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
-.|-.+..+| +.+||-+.||++|...
T Consensus 370 -~RadlL~rLg-r~~eAr~aydrAi~La 395 (415)
T COG4941 370 -ARADLLARLG-RVEEARAAYDRAIALA 395 (415)
T ss_pred -HHHHHHHHhC-ChHHHHHHHHHHHHhc
Confidence 2566677888 9999999999999884
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.06 E-value=15 Score=36.69 Aligned_cols=105 Identities=10% Similarity=-0.086 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~---------da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.+|..--..++.+.-.+++++|+....++-.--|. -+....-.|-|...+|+++++++..+.++..=|...
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 45677778899999999999999998887665444 234555678899999999999999999997766643
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+...-..--++.++.-.| ++++|+.+....-..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~a~~~ 526 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRG-ELTQALALMQQAEQM 526 (894)
T ss_pred chhhhhhhhhhhHHHHHhc-hHHHHHHHHHHHHHH
Confidence 3222222334777777788 899999877655443
No 284
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=20 Score=33.83 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHhhcC---CCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCCHHHH--HHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLP---YNQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-KHDCWSQ--HALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~---~~p~-------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-P~da~A~--h~lahvl~ 67 (192)
+|+..+++..+..+.. ..|. .+..|..+|.-..-.|.|+.||..+..|+.+- ..|-||. .++|-++.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 4777777777666554 3454 46788888888889999999999999999864 4566664 57889999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCC--cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSS--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~--~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+|+-+.--..++..-+.+....+ .+.+-+..-.|++.+..+ ++.||.....+.+.-
T Consensus 416 ~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn-~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN-DLNEAKRFLRETLKM 474 (629)
T ss_pred HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh
Confidence 999888777766665544322111 111224445788888888 899999988887765
No 285
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.39 E-value=9.4 Score=37.02 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh----------------------------
Q 029491 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS---------------------------- 84 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~---------------------------- 84 (192)
.+.|-.+=+...+||=|.++|.. .-.---.+...+|.+|+..-++..+.
T Consensus 149 ~~~~lPets~rvyrRYLk~~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 149 ESHGLPETSIRVYRRYLKVAPEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred HhCCChHHHHHHHHHHHhcCHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence 45555566777777777777765 33444556667777777666665542
Q ss_pred ----------------hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 85 ----------------TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 85 ----------------~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..++. .++.|--||-+|+..| ++|.|..+|+.+|..-
T Consensus 226 ~~~slnvdaiiR~gi~rftDq----~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 226 KVQSLNVDAIIRGGIRRFTDQ----LGFLWCSLADYYIRSG-LFEKARDVYEEAIQTV 278 (835)
T ss_pred hhcccCHHHHHHhhcccCcHH----HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhh
Confidence 22221 2345556999999999 9999999999999984
No 286
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.23 E-value=2 Score=35.67 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH 68 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~ 68 (192)
|+..+.+|....|+.+..++.+|......|+.=+|.=.+-|++...--.+-|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666665554446666666666655
No 287
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.40 E-value=19 Score=36.18 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------------------hcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKG---------------------LKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrA---------------------LaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
..+.--|--++-.|++|.|...|..| |+-...|--|..-+|.-++-.|++.+|+.||.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33333444577888888888877654 455578889999999999999999999999998
Q ss_pred hH
Q 029491 82 CS 83 (192)
Q Consensus 82 a~ 83 (192)
|.
T Consensus 993 Aq 994 (1416)
T KOG3617|consen 993 AQ 994 (1416)
T ss_pred HH
Confidence 76
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.08 E-value=5.3 Score=37.40 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
.++..-+|..+.+.|+.+||+++++.-+..+|. +-..+-+|..++...++.+|+-+.+.+--
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 567777889999999999999999999998887 45688899999999999999999998854
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.86 E-value=5.3 Score=31.28 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHhHh-hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 55 DCWSQHALCHVLQHDC---CFKEAVQFMEECSS-TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 55 da~A~h~lahvl~~~G---r~~eai~~~~~a~~-~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
......+++|++...- +..+||..++..++ ..|... ..+-++ +|+.|..+| +|+++++..+..+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r--Re~lyY--LAvg~yRlk-eY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR--RECLYY--LAVGHYRLK-EYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc--hhhhhh--hHHHHHHHh-hHHHHHHHHHHHHhhC
Confidence 4567889999998765 46789999999997 444432 133334 999999999 9999999999999885
No 290
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.56 E-value=4.4 Score=32.34 Aligned_cols=51 Identities=16% Similarity=0.037 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
..+..++.+++.+.-.| ++.....++-++..+|+.+||..+++++..+.|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34456677888888888 6888899999999999999999999999999985
No 291
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.45 E-value=4.8 Score=32.12 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
.++-+++.++.++.+|+. . ..-.++.++...| +.++|..+..+...
T Consensus 127 l~~~~~~a~~~l~~~P~~-~-----~~~~~a~~l~~~G-~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDP-N-----VYQRYALALALLG-DPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHHHhCCCH-H-----HHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 445566667777777662 2 1223566666666 77777777666543
No 292
>PF12854 PPR_1: PPR repeat
Probab=82.77 E-value=3.1 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
...+..+-+.+...|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44566666666666666666666654
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.65 E-value=32 Score=30.68 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=81.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cc------------------------CCCHHHHHHHHHH
Q 029491 15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-----IN------------------------KHDCWSQHALCHV 65 (192)
Q Consensus 15 l~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa-----L~------------------------P~da~A~h~lahv 65 (192)
+..+|-....+-.++-++..+|+++.|.+..+|||= +. ...--+.+...+.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 445677888889999999999999999999999862 11 1223577888899
Q ss_pred HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
+.++|.+.-|+++..=-+.++|...+ .+.-.++=.+.+..+ +|+--+..++....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP---~g~ll~ID~~ALrs~-~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDP---LGVLLFIDYYALRSR-QYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCc---chhHHHHHHHHHhcC-CHHHHHHHHHhHhh
Confidence 99999999999999999999999433 123333555556777 89988888886554
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.63 E-value=5.2 Score=35.25 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
-.++..+-.+.++|.+.+|..+.+|++.++|-+-....-+-.++...|+-=+++..|++-.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3456667788899999999999999999999999999999999999999777777776544
No 295
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=9.6 Score=34.78 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLE------------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e------------~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~ 72 (192)
.+++....+.+..+|+...+++..=-+..+ +..+++=...-..+|..||++-+++|-+.+++...+..
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 456777778888899998888776554433 22455666778899999999999999999999988876
Q ss_pred --HHHHHHHHHhHhhccCC
Q 029491 73 --KEAVQFMEECSSTWSSC 89 (192)
Q Consensus 73 --~eai~~~~~a~~~~p~~ 89 (192)
..=+..++++++.+|++
T Consensus 126 ~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRN 144 (421)
T ss_pred hHHHHHHHHHHHHhcCccc
Confidence 67789999999999884
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.97 E-value=8.9 Score=33.25 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl 103 (192)
++.-++-.+..+|+++.+++...+-+.++|.|-.++-.+=-++...|+...+|..|++.........+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg------------ 222 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG------------ 222 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC------------
Confidence 33445556667899999999999999999999999999999999999999999999988765322111
Q ss_pred HHHhCCCCHHHHHHHHHHhhhh
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~ 125 (192)
-. .-.++..+|.+.+..
T Consensus 223 ----i~-P~~~~~~~y~~~~~~ 239 (280)
T COG3629 223 ----ID-PAPELRALYEEILRQ 239 (280)
T ss_pred ----CC-ccHHHHHHHHHHhcc
Confidence 12 346777788777555
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.12 E-value=16 Score=31.40 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=64.3
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCCHHH------HHHHHHHHHhc-CCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHH
Q 029491 32 LLELGQMSDAEEAAKKGLKINKHDCWS------QHALCHVLQHD-CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVAL 103 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~P~da~A------~h~lahvl~~~-Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl 103 (192)
....++..+|..+.++|+++--+-..- +..+|.+++.. -+++.+|..|+++-+-.....+. ...-..--.|.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 334557788888888888876443332 33778888876 89999999999998766553221 01112233555
Q ss_pred HHHhCCCCHHHHHHHHHHhhhhh
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+--.+| +|.+|+.+|++....+
T Consensus 163 yaa~le-qY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 163 YAAQLE-QYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHh
Confidence 555677 8999999999988765
No 298
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.10 E-value=37 Score=35.86 Aligned_cols=91 Identities=8% Similarity=-0.056 Sum_probs=46.0
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 110 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~ 110 (192)
.|...+.+++|.+.+++-+.--.+-.-.|.-.+..+..+.+.++|-..+.+|+.--|... +..+---.|..-+..|
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---Hv~~IskfAqLEFk~G- 1614 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---HVEFISKFAQLEFKYG- 1614 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh---hHHHHHHHHHHHhhcC-
Confidence 344445555555555555555555555555555555555555555555555555544411 0111112344444555
Q ss_pred CHHHHHHHHHHhhhh
Q 029491 111 PMRKVLEIYDNHIWK 125 (192)
Q Consensus 111 ~~deAl~~yd~~i~~ 125 (192)
+-+++..+|+..+..
T Consensus 1615 DaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA 1629 (1710)
T ss_pred CchhhHHHHHHHHhh
Confidence 556666666665554
No 299
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.99 E-value=3.1 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKI 51 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL 51 (192)
++..+|-+-.++++|++|..-++++|.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.63 E-value=35 Score=30.42 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHhHhhcc-----CCCCcchh
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKH-DCWSQHA-LCHVLQHDCCFKEAVQFMEECSSTWS-----SCSSFMYT 95 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-da~A~h~-lahvl~~~Gr~~eai~~~~~a~~~~p-----~~~~~~~~ 95 (192)
-++..+.-.|.+.|.+.-|.+.++--+.|||. ||-+.-- +=+.-.+.++++-=+.++++...... ..|+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---- 179 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---- 179 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc----
Confidence 44556666899999999999999999999999 9976554 44555667778778888888765211 1233
Q ss_pred hhHHHHHHHHHhCCCCH---------------HHHHHHHHHhhhh
Q 029491 96 HNWWHVALCYLEGHSPM---------------RKVLEIYDNHIWK 125 (192)
Q Consensus 96 h~~WhlAl~~l~~G~~~---------------deAl~~yd~~i~~ 125 (192)
...-.||+++.++ +- ++|-....++|..
T Consensus 180 -~a~S~aLA~~~l~-~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 180 -FAFSIALAYFRLE-KEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred -HHHHHHHHHHHhc-CccccccccccccccchhHHHHHHHHHHHH
Confidence 2334777777777 55 6777776666654
No 301
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.16 E-value=31 Score=31.24 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------------CCCHH------------HHH
Q 029491 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------------KHDCW------------SQH 60 (192)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------------P~da~------------A~h 60 (192)
+=+.....|++++|.-+.++..+| -+|.--..+||..+++||..- ..... .-.
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKR 279 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLA--EEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKR 279 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHH
Confidence 334566779999999888877665 355667788999988888632 11122 234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCH---HHHHHHHHH
Q 029491 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM---RKVLEIYDN 121 (192)
Q Consensus 61 ~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~---deAl~~yd~ 121 (192)
.++.+-..+||..||+..++...+..|-. .++..|-+ +=-++|+.. .| ...+.-||.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~-t~lniheN--LiEalLE~Q-AYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLL-TMLNIHEN--LLEALLELQ-AYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHH-HHHHHHHH--HHHHHHHHH-HHHHHHHHHHhhcc
Confidence 57788889999999999999999888753 32345544 444455553 44 445566664
No 302
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.97 E-value=5.3 Score=31.28 Aligned_cols=66 Identities=11% Similarity=-0.028 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHhc-ccCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 24 IFGILAFSLLELG---QMSDAEEAAKKGLK-INKH-DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 24 ~~~~laf~L~e~g---~~~eAe~~~rrALa-L~P~-da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
-..++|++|.... +..+.+.+.+..+. -.|. .-.=++-++..++..+++++++.+.+..++..|++
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3445555554332 33445555555553 2222 22344555555555666666666666666655554
No 303
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.88 E-value=12 Score=34.71 Aligned_cols=117 Identities=9% Similarity=-0.052 Sum_probs=79.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccc-------------CCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKIN-------------KHDC-----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~-------------P~da-----~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
|-....++.|..|..-++.||++. ++|+ +..--+..++...++++-|+...-+.+-++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 334556677777777777777765 2222 3445678889999999999999999999999853
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCc
Q 029491 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE 153 (192)
Q Consensus 91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~ 153 (192)
..|.+ .|.+.--+. +|-||-+..-.+.--.... + ..-+-+.+...|+|...++..
T Consensus 263 ---rnHLr--qAavfR~Le-Ry~eAarSamia~ymywl~-g-~~~q~~S~lIklyWqamiEeA 317 (569)
T PF15015_consen 263 ---RNHLR--QAAVFRRLE-RYSEAARSAMIADYMYWLS-G-GSEQRISKLIKLYWQAMIEEA 317 (569)
T ss_pred ---hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHhc-C-CchHhHHHHHHHHHHHHHHHH
Confidence 67876 666665665 7888876543332221101 1 123556788999999887654
No 304
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=78.83 E-value=7.1 Score=23.09 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHhHhhcc
Q 029491 57 WSQHALCHVLQHDCCFKEAVQF--MEECSSTWS 87 (192)
Q Consensus 57 ~A~h~lahvl~~~Gr~~eai~~--~~~a~~~~p 87 (192)
..+..+|.++.++|+.++|+.+ ++-+..+.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999 435554443
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.52 E-value=62 Score=30.71 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=80.3
Q ss_pred HHHHHHhhcC---CCC-CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcccCCC--H----HHHHHHHHHHHhcCCHHHH
Q 029491 7 CFDIIHQVLP---YNQ-QEDFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHD--C----WSQHALCHVLQHDCCFKEA 75 (192)
Q Consensus 7 al~~~~ral~---~~p-~~~~~~~~laf~L-~e~g~~~eAe~~~rrALaL~P~d--a----~A~h~lahvl~~~Gr~~ea 75 (192)
++.+.+-++. ..| .++.++.-+|-+| .|+..+++||....|++.+..++ - .+.+-++.++..++... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4455555553 223 3567788888877 49999999999999999988542 2 34567788998888888 9
Q ss_pred HHHHHHhHhhccCCCCcchhhhHHHHHHHH------HhCCCCHHHHHHHHHHhhhhh
Q 029491 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCY------LEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~------l~~G~~~deAl~~yd~~i~~~ 126 (192)
+..++++++..... .|..|..+.-+ +..+ ++..|+..++......
T Consensus 119 ~~~l~~~I~~~~~~-----~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 119 LKNLDKAIEDSETY-----GHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHh
Confidence 99999999876553 23344333222 2336 8999999998877764
No 306
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.51 E-value=34 Score=28.21 Aligned_cols=106 Identities=7% Similarity=-0.082 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHhcc----cCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---------ccCCCCcchhhhH
Q 029491 35 LGQMSDAEEAAKKGLKI----NKH-D--CWSQHALCHVLQHDCCFKEAVQFMEECSST---------WSSCSSFMYTHNW 98 (192)
Q Consensus 35 ~g~~~eAe~~~rrALaL----~P~-d--a~A~h~lahvl~~~Gr~~eai~~~~~a~~~---------~p~~~~~~~~h~~ 98 (192)
...+++|.+.+.-||-- ..+ . +....-+|+.+..+|+.+.-..++++|+.. .|..+. -..-.-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~-~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM-DEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc-hHHHHH
Confidence 34566677766665542 222 2 677888999999999987777777777632 222211 011233
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHH
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (192)
.=+|.....+| ++++|.++|.+.|... ..+. ...++|.+-=+|
T Consensus 169 YLigeL~rrlg-~~~eA~~~fs~vi~~~---~~s~-~~~l~~~AR~~w 211 (214)
T PF09986_consen 169 YLIGELNRRLG-NYDEAKRWFSRVIGSK---KASK-EPKLKDMARDQW 211 (214)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHcCC---CCCC-cHHHHHHHHHHH
Confidence 34788888999 9999999999999874 2222 235666655444
No 307
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.16 E-value=5.5 Score=37.36 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcccCCCHHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHAL 62 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~-~~eAe~~~rrALaL~P~da~A~h~l 62 (192)
+-++-..+.+++...|++|.++-+-|+=+.|-|. .+.|.+.+.++|..||+++-.+...
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 4456677889999999999999999998888886 9999999999999999999766543
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.04 E-value=33 Score=27.30 Aligned_cols=102 Identities=11% Similarity=0.035 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhhhH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNW 98 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~ 98 (192)
.++-.+|--+.+.|++++|.+.+.++..-.... .....++--|-...|++.....+++++..+-..... -......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 566778888999999999999999988866443 355667788889999999999999999866444211 0011112
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
=--|++++..| +|.+|-..|=..+..
T Consensus 117 ~~~gL~~l~~r-~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQR-DFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhc-hHHHHHHHHHccCcC
Confidence 23788899998 999999999776654
No 309
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.88 E-value=40 Score=28.16 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=82.1
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhcC-------
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDC------- 70 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~G------- 70 (192)
+..+++.++++ .....++.+...+|..+.. ..++.+|...+++|....-.. ..+...++..+..-.
T Consensus 92 ~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 35667777773 3455777888888888876 448999999999999886554 466889988887753
Q ss_pred CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC---CHHHHHHHHHHhhhhh
Q 029491 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS---PMRKVLEIYDNHIWKE 126 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~---~~deAl~~yd~~i~~~ 126 (192)
..+.|+.++.++...-. .-..+.++.+|....| ++.+|..+|.++....
T Consensus 170 ~~~~A~~~~~~aa~~~~-------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 170 DDKKALYLYRKAAELGN-------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHhHHHHHHHHHHhcC-------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 33368888888776641 2245568877644212 7899999999988763
No 310
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.51 E-value=5.8 Score=21.21 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491 36 GQMSDAEEAAKKGLKINKHDCWSQHALC 63 (192)
Q Consensus 36 g~~~eAe~~~rrALaL~P~da~A~h~la 63 (192)
|.+++|...+++++...|+++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4556677777777777776665555443
No 311
>PF12854 PPR_1: PPR repeat
Probab=77.20 E-value=6.2 Score=22.65 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKK 47 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rr 47 (192)
|...++.+=-++...|++++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566778888899999999999998875
No 312
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.51 E-value=15 Score=25.88 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=27.1
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHhH
Q 029491 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALC---HVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~la---hvl~~~Gr~~eai~~~~~a~ 83 (192)
|.+.++.++|+..-+++|.--++.+.-+-++| .++...|++++.++|.-+-+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666665555554433333 34455555555555544443
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.24 E-value=6.3 Score=25.41 Aligned_cols=31 Identities=6% Similarity=-0.125 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
++-+|-.+...|++++|..+.+..++..|++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 5667888899999999999999999999885
No 314
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=75.43 E-value=16 Score=34.78 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 46 KKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 46 rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|+-++.||.|..++..|-.-++.+ -+++....+|+-+...|..+. .|=-..-..+... +|+.+..+|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r-----~W~~yi~~El~sk-dfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR-----AWKLYIERELASK-DFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH-----HHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 677788888888888888777777 888888888888888877654 2222233345555 788888888777766
No 315
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.11 E-value=64 Score=29.17 Aligned_cols=142 Identities=14% Similarity=0.007 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ--HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~--h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
.--+.+.=++.+|.+.-|.-.+.+.=--|=-|.... ...-+--...|++++++.|+.+....--...+-+.....-.-
T Consensus 118 l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQe 197 (389)
T KOG0396|consen 118 LDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQE 197 (389)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence 334556667789988888887754432232233222 223444567899999999999877433332221222222224
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHH-HHHHHHHHHhhhcCccc---chhchHHHHHHHHhh
Q 029491 102 ALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY-LNALGLLLRVYVRGELD---VFGNRLKVLADCVAD 170 (192)
Q Consensus 102 Al~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~-~da~sLL~Rl~l~g~~~---~~~~rw~~l~~~~~~ 170 (192)
..=++..+ .|++|++...+++.+-. ++ ...++ +..+.|-|+..-.+... --.+||+.|++...+
T Consensus 198 fIELi~~~-~~~~Ai~~akk~f~~~~---~~-~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s 265 (389)
T KOG0396|consen 198 FIELIKVD-NYDKAIAFAKKHFAPWA---KS-HKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLS 265 (389)
T ss_pred HHHHHHhc-cHHHHHHHHHHHHhhhh---hh-hHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhH
Confidence 44456777 89999999999999852 22 23344 45555667776665522 236899999998877
No 316
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.39 E-value=8.1 Score=36.40 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHhh-cCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cc-------------C
Q 029491 1 MGRPDLCFDIIHQV-LPYNQQ--------EDFIFGILAFSLLELGQMSDAEEAAKKGLK-----IN-------------K 53 (192)
Q Consensus 1 ~G~~~~al~~~~ra-l~~~p~--------~~~~~~~laf~L~e~g~~~eAe~~~rrALa-----L~-------------P 53 (192)
+|++..|.....+. +.-.|. ...+++++|-+....|.|.-+...+.+||. |. -
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 46666666655432 222333 456778999999999999999999999995 11 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491 54 HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (192)
Q Consensus 54 ~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~ 107 (192)
.......++|-.+...||+.+|...+.++....-.+|. .|.-+|-+.+.
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr-----lWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR-----LWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHH
Confidence 46788999999999999999999999999988777542 66678877654
No 317
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.89 E-value=77 Score=31.05 Aligned_cols=118 Identities=10% Similarity=0.137 Sum_probs=82.7
Q ss_pred ChHHHHHHHHhhcC--CCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 3 RPDLCFDIIHQVLP--YNQQ----------------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 3 ~~~~al~~~~ral~--~~p~----------------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
+++.|+...++|+. ..|. ..-+++|++.-.+-.|-++--.++++|-+.|.=-.|....|.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45677777777654 3321 23567888888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH----HHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV----ALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl----Al~~l~~G~~~deAl~~yd~~i~~ 125 (192)
-++.-.-|+|+-..|++-+.+.+- |. ...+ |+. ....+... ..+.|..+|++++..
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~-p~--v~di-W~tYLtkfi~rygg~-klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKW-PN--VYDI-WNTYLTKFIKRYGGT-KLERARDLFEQALDG 579 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCC-cc--HHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence 888888888888888888877655 22 2222 332 22223333 678888888888874
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.75 E-value=9.6 Score=26.91 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred ChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491 3 RPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKI 51 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL 51 (192)
+..+|+..-.++++..++. ..++|.+.-++++.|+|.+..+.+-+=+.+
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888865543 578888888999999999999887776654
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.08 E-value=57 Score=27.62 Aligned_cols=67 Identities=15% Similarity=-0.018 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK----HDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 18 ~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P----~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
..+....+...+-.....|+++.|.....++...++ ..+...+.-+..+-.+|+..+|+..+++.+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334556667778888999999999999999998762 3678899999999999999999999998887
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.50 E-value=27 Score=33.10 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 35 ~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
.|+.-.|-.-.+.+|.-.|.+|.-.--.+.+++..|.++.+.+.+..+-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~ 350 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVE 350 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchh
Confidence 4555555555555555555555555555555555555555555554444
No 321
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.06 E-value=32 Score=31.36 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhcccCCCH---------------HHHHHHHHHHHhcCCHHHHHHHH
Q 029491 17 YNQQEDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDC---------------WSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 17 ~~p~~~~~~~~laf--~L~e~g~~~eAe~~~rrALaL~P~da---------------~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
.+|+-|..++.+-+ .|.+..+..+-.+..++. .+|... -+.-.+..++...|++..|+..+
T Consensus 68 ~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~--~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 68 NNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRG--EDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred hccCcccHHHHHHHHHHHHHHHhHHHHHHHhhcc--CCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Confidence 45777777777766 566777777766665553 222221 24556778999999999999988
Q ss_pred HHhHh----hccCCCCcchhh--hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 80 EECSS----TWSSCSSFMYTH--NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 80 ~~a~~----~~p~~~~~~~~h--~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+.--- +....+ .+| ...|.|.+|++++ +|.+|++.+...+.-
T Consensus 146 ~~idl~~~~l~~~V~---~~~is~~YyvGFaylMlr-RY~DAir~f~~iL~y 193 (404)
T PF10255_consen 146 ENIDLNKKGLYTKVP---ACHISTYYYVGFAYLMLR-RYADAIRTFSQILLY 193 (404)
T ss_pred hccCcccchhhccCc---chheehHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 75321 111112 233 4568999999998 999999999776643
No 322
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=71.15 E-value=17 Score=30.00 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=40.5
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 41 Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
|+..|++|+.+.|++...+|-+|.+...+|+.=+++=+|-+++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999843
No 323
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.41 E-value=12 Score=29.01 Aligned_cols=48 Identities=15% Similarity=-0.013 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHH
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~e 74 (192)
-.+-.....|+|.-|.++....+..+|+|..+..-++.++...|...+
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 445556789999999999999999999999999999999888776554
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.38 E-value=49 Score=28.51 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHHHhccc-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHH
Q 029491 32 LLELGQMSDAEEAAKKGLKIN-----KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCY 105 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~-----P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~ 105 (192)
+.....+..|-..+.+|-.+. .+|+-....-+--.+..+++.+|+..+++++++.-+-..| +.+.+.--+|-.|
T Consensus 44 yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiy 123 (288)
T KOG1586|consen 44 YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIY 123 (288)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHH
Confidence 333344444444444444332 4445444455555567789999999999999998775543 1111111244443
Q ss_pred -HhCCCCHHHHHHHHHHhhhh
Q 029491 106 -LEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 106 -l~~G~~~deAl~~yd~~i~~ 125 (192)
-++- +++.|+..|+++-.-
T Consensus 124 Esdl~-d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 124 ESDLQ-DFEKAIAHYEQAAEY 143 (288)
T ss_pred hhhHH-HHHHHHHHHHHHHHH
Confidence 2344 799999999887654
No 325
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.06 E-value=73 Score=27.64 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=90.3
Q ss_pred HHHHHHHhhcCCCC-CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHH------HHHHHHhcCCHHHH
Q 029491 6 LCFDIIHQVLPYNQ-QE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------LCHVLQHDCCFKEA 75 (192)
Q Consensus 6 ~al~~~~ral~~~p-~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~------lahvl~~~Gr~~ea 75 (192)
++.....+.+..|. |. +..+.--+.++.-..+|+.|..+.++|..-.-++..-+|+ .+..+.....+.|+
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44455555555553 32 3555666778889999999999999999655555444443 45667778899999
Q ss_pred HHHHHHhHhhccCCCCcchh-hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCC-CCCChHHHHHHHHHHHHhhhc
Q 029491 76 VQFMEECSSTWSSCSSFMYT-HNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKP-DAVHPEVYLNALGLLLRVYVR 151 (192)
Q Consensus 76 i~~~~~a~~~~p~~~~~~~~-h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~-~~~~~~~~~da~sLL~Rl~l~ 151 (192)
+.+++++..++-.+.+ +.+ -...-.|-=.++.- +-|+|+++|.+.+.--.+.+ .-+-...+--.+.+|-|++..
T Consensus 91 vdl~eKAs~lY~E~Gs-pdtAAmaleKAak~lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 91 VDLYEKASELYVECGS-PDTAAMALEKAAKALENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 9999999988766543 121 11212333346765 88999999999887642111 111112223455556565543
No 326
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=69.61 E-value=45 Score=24.98 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHHHHhHhh-ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHH
Q 029491 68 HDCCFKEAVQFMEECSST-WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~-~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (192)
..|+.++|++|+++..+. ...++. +.....-.--+-.+..| +..+|+..-++.+.+. ......++-+..++|-
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~-L~f~L~~q~fiell~~~-~~~~Ai~y~r~~l~~~----~~~~~~~l~~~~~lL~ 86 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSS-LEFELRCQQFIELLREG-DIMEAIEYARKHLSPF----NDEFLEELKKLMSLLA 86 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCc-hhHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHH
Confidence 789999999999987632 222222 22222111222234456 8999999999988542 1123456667777775
Q ss_pred HhhhcC---ccc---chhchHHHHHHHHhhcc
Q 029491 147 RVYVRG---ELD---VFGNRLKVLADCVADQV 172 (192)
Q Consensus 147 Rl~l~g---~~~---~~~~rw~~l~~~~~~~~ 172 (192)
--.... ..+ -..+||+.|++.+....
T Consensus 87 ~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~ 118 (145)
T PF10607_consen 87 YPDPEEPLPSPYKELLSPERREELAEEFNSAI 118 (145)
T ss_pred cCCcccccchHHHHHhChHHHHHHHHHHHHHH
Confidence 444433 110 01379999999988733
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=69.54 E-value=10 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 58 SQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 58 A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
.+-.+|-+-...+++++|+.-|++++.+.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777654
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.39 E-value=22 Score=28.27 Aligned_cols=68 Identities=9% Similarity=-0.111 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..++..+|.-+...|+.++|++.|.++.+.-.. +. ...+...++-...+..| ++..+.....++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~-~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PG-HKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HH-HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 367889999999999999999999997765333 22 13345555666667788 8999988887776653
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.74 E-value=59 Score=26.91 Aligned_cols=60 Identities=12% Similarity=0.007 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH
Q 029491 54 HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116 (192)
Q Consensus 54 ~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl 116 (192)
+++....++|..+. .-+.+.++..+-+++++.+.+..| .....--+|-.+...| +++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~-n~eil~sLas~~~~~~-~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNF-NPEILKSLASIYQKLK-NYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhc-chhhhh
Confidence 57888888887776 788999999999999888776332 4555556888888888 898875
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=66.55 E-value=58 Score=32.97 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------hccc----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKG----------LKIN----------KHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrA----------LaL~----------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
-+.++|--|++.++.+.|.+.++++ |.-+ ..|+-.+-..|..++-+|+-+.|+.+|..|.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4557788899999999999988875 2233 3466677778999999999999999999987
Q ss_pred hhccC-------------------CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 84 STWSS-------------------CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 84 ~~~p~-------------------~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
+-... ... .. .-.|+|-.|=..| ++.+|+..|.++-+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd-~A--AcYhlaR~YEn~g-~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGD-KA--ACYHLARMYENDG-DVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhccc-HH--HHHHHHHHhhhhH-HHHHHHHHHHHHHH
Confidence 54322 111 01 3458888876677 89999998877544
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.34 E-value=42 Score=28.62 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=56.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.-.|...+++++|+..++.-+.-+|.|+...|.+=..+.-.|+.++|..-++-+-++.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34577889999999999999999999999999999999999999999999999999988864
No 332
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.97 E-value=12 Score=26.28 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.|++|.+...+||..+ +.|..++|+.+|+++++
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 4556666666666554 44666667766666664
No 333
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=65.64 E-value=5.7 Score=35.42 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH--HHHHHHHHh
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGI-LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ--HALCHVLQH 68 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~-laf~L~e~g~~~eAe~~~rrALaL~P~da~A~--h~lahvl~~ 68 (192)
.++-..+.+++...|.+...+-. .+|-+.+.+.++.+.+++.++|.+||++|-.+ .-.-.++++
T Consensus 124 ~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yi 190 (435)
T COG5191 124 GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYI 190 (435)
T ss_pred HHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHH
Confidence 34556678899999999887765 78899999999999999999999999998544 334444444
No 334
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.23 E-value=51 Score=27.89 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=50.0
Q ss_pred HcCCHHHHHHHHHHHhccc-CCCH-------HHHHHHHHHHHhcC-CHHHHHHHHHHhHhhc----cC---CCCc--chh
Q 029491 34 ELGQMSDAEEAAKKGLKIN-KHDC-------WSQHALCHVLQHDC-CFKEAVQFMEECSSTW----SS---CSSF--MYT 95 (192)
Q Consensus 34 e~g~~~eAe~~~rrALaL~-P~da-------~A~h~lahvl~~~G-r~~eai~~~~~a~~~~----p~---~~~~--~~~ 95 (192)
..|+++.|+.++.|+=.+. ..+| ....+.|--+...+ ++++|+.|++++.++- +. .+.. ++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5788888888888876655 3343 34455666666777 9999999999988762 11 1110 111
Q ss_pred hhHHHHHHHHHhCCCCHHH
Q 029491 96 HNWWHVALCYLEGHSPMRK 114 (192)
Q Consensus 96 h~~WhlAl~~l~~G~~~de 114 (192)
..---++.++++.+ .++.
T Consensus 85 ~iL~~La~~~l~~~-~~~~ 102 (278)
T PF08631_consen 85 SILRLLANAYLEWD-TYES 102 (278)
T ss_pred HHHHHHHHHHHcCC-ChHH
Confidence 22224777778876 5543
No 335
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.15 E-value=12 Score=25.99 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 41 Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
|...+.+|++++ ..||++||+..|.++++
T Consensus 6 A~~~a~~AVe~D---------------~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAE---------------KEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHH
Confidence 555666666655 56777777766666653
No 336
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.95 E-value=12 Score=25.98 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 40 DAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 40 eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
.|.+.+++|++.+ ..|+++||+..|..+++.
T Consensus 5 ~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHHH
Confidence 4777777777776 669999999999998876
No 337
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.90 E-value=21 Score=33.80 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P--~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
....++|.++.-+|++++|..+.-+|..+-| .++.|....-.+=.|.|+...|++.+.+..-.
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~ 684 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHV 684 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccc
Confidence 5677888889999999999999988888888 67777777777778889998888888776533
No 338
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.84 E-value=15 Score=25.52 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+++|+....+|+..+ ..|+.+||+..|.++++.+
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHHH
Confidence 455666666665544 5577777777777777653
No 339
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.77 E-value=16 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=13.6
Q ss_pred hcCCHHHHHHHHHHhHhh
Q 029491 68 HDCCFKEAVQFMEECSST 85 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~ 85 (192)
..|++++|+..|.+++..
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 568888888888877754
No 340
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.02 E-value=53 Score=27.05 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHhcccCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 22 DFIFGILAFSLLELGQM-------SDAEEAAKKGLKINKH------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~-------~eAe~~~rrALaL~P~------da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+..+--+|+.+.+.|+- ..|...+++|++-... ..-...-+|-.....|+.+||+.|+.+.+..-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 56667778888888883 4477778888875533 24677789999999999999999999999653
No 341
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.68 E-value=22 Score=30.86 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=53.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h 60 (192)
|++-+.++....+|.++|++.-++.-.|-+....=..++|.+-+..+|+++|.-+-++.
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 66778899999999999999999999999999999999999999999999998665443
No 342
>PF13041 PPR_2: PPR repeat family
Probab=60.99 E-value=22 Score=21.64 Aligned_cols=16 Identities=6% Similarity=0.256 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHhhhhh
Q 029491 111 PMRKVLEIYDNHIWKE 126 (192)
Q Consensus 111 ~~deAl~~yd~~i~~~ 126 (192)
++++|+++|++.....
T Consensus 18 ~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 18 KFEEALKLFKEMKKRG 33 (50)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4555555555555554
No 343
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=60.13 E-value=70 Score=23.92 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCH-----------HHHHHHHHHhHhhccC
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCF-----------KEAVQFMEECSSTWSS 88 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~-----------~eai~~~~~a~~~~p~ 88 (192)
|..+.+.|++-+|.++.+..+..++++. -.+..-|.++..++.- --+++.+.++..+.|.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 5667789999999999999999999987 3445557777655542 2356666666666655
No 344
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=59.39 E-value=19 Score=34.28 Aligned_cols=58 Identities=22% Similarity=0.019 Sum_probs=50.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~ 59 (192)
|+.-.|+.-...|++++|..--+|+-++-+|.|.+++.+|......+.-.+|.|..-.
T Consensus 425 ~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 5666778888889999999999999999999999999999999888888888776433
No 345
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=59.18 E-value=16 Score=22.57 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=16.6
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 029491 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDA 41 (192)
Q Consensus 11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eA 41 (192)
+.+++-.+|++....-.+|-=|.+.|+.++|
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 3444555555555555555555555555444
No 346
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=57.59 E-value=39 Score=29.23 Aligned_cols=78 Identities=4% Similarity=-0.036 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLEL----------------------GQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~----------------------g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
.+..++.-+...|++.+++...|..+... -..+.|...+.+|++++|+...|...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 45556666677898888887777755442 12456888899999999999999999998
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccC
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
+-...|.++ |+..-....|.
T Consensus 142 ~s~~fgeP~----WL~~l~~g~~~ 161 (277)
T PF13226_consen 142 ISAYFGEPD----WLAALFAGQPA 161 (277)
T ss_pred HHhhcCCch----HHHHHHCCCCC
Confidence 888888886 55555544444
No 347
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.37 E-value=22 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+++|...+.+|+..+ ..|+.++|+..|.++++.+
T Consensus 3 ~~~A~~l~~~Av~~D---------------~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 3 LQKAIELVKKAIEED---------------NAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHH
Confidence 455666666665544 6688888888888877653
No 348
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=55.93 E-value=22 Score=24.38 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+++|.....+|++.+ ..|+.++|+..|.++++.+
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHH
Confidence 355666666665554 6688888888888888663
No 349
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.70 E-value=1.8e+02 Score=27.86 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl 103 (192)
+++--..+|......+.|.+..+.-+.-....+-+....+..+..-|.++.+-+.|++..+.+|++ . + .. +|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--~~--~~~ 82 (578)
T PRK15490 10 ALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE-A--R--YE--YAR 82 (578)
T ss_pred HhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc-h--H--HH--HHH
Confidence 445555677777788888888888888778888888888888899999999999999999888883 2 3 33 444
Q ss_pred HHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHHHH
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVL 164 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l 164 (192)
-+...| -.-.|..+.. .+.+...+.-.-...++..-..+|=||+ |.++|||.-=..+
T Consensus 83 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 139 (578)
T PRK15490 83 RLYNTG-LAKDAQLILK-KVSNGVQKKYNNYLGKINKICDLLERLE--GKAIPVGTNTCII 139 (578)
T ss_pred HHHhhh-hhhHHHHHHH-HhCccHhHHHHHHHHHHHHHHHHHHHhc--cCCCCCccchHHH
Confidence 445555 5555555543 3333210000000113334456677777 7777887655444
No 350
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=54.99 E-value=25 Score=21.78 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=29.1
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHH
Q 029491 43 EAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75 (192)
Q Consensus 43 ~~~rrALaL~P~da~A~h~lahvl~~~Gr~~ea 75 (192)
..+.+||.-+|+|-.+....+--+..+|+++.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 457889999999999999999999999999655
No 351
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.78 E-value=63 Score=33.62 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=88.6
Q ss_pred HHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 10 IIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 10 ~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.+.++.- ..|+-+..+-+++......|++++|....++|.-+. |+...+..++++.-.......-++..+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 4554433 568888889999999999999999999999998876 8888999999999999999999999999
Q ss_pred HhHhhcc-----CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWS-----SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p-----~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++.++- +.|.. +-..=|+.+.++..+ +++.|+...+.+...
T Consensus 1040 ra~~l~~Ls~ge~hP~~--a~~~~nle~l~~~v~-e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPT--ALSFINLELLLLGVE-EADTALRYLESALAK 1086 (1236)
T ss_pred HHHHhhccccCCCCCch--hhhhhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 9986542 22221 112235888877777 899999888877765
No 352
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.64 E-value=26 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 39 SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 39 ~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
..|.+...+|++.+ ..|+++||+..|.++++.+
T Consensus 4 ~~a~~l~~~Ave~D---------------~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 4 LAAKEVLKRAVELD---------------QEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHH
Confidence 34556666665554 6799999999998888663
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=54.58 E-value=50 Score=33.40 Aligned_cols=88 Identities=13% Similarity=-0.042 Sum_probs=70.9
Q ss_pred ChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491 3 RPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLEL----G---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~----g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~ 72 (192)
.+++|+..++|.....|+- -.+....|.++.|. | .+++|...+++- ---|.-|--+--.|+|++..|++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhH
Confidence 4678999999998888865 46778888877652 3 477777777653 33577788888899999999999
Q ss_pred HHHHHHHHHhHhhccCCCC
Q 029491 73 KEAVQFMEECSSTWSSCSS 91 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~ 91 (192)
+|=|..++-+++.+|+.|-
T Consensus 569 ~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999874
No 354
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.10 E-value=1.3e+02 Score=25.05 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=86.4
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE 74 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e 74 (192)
....+...+.++-.. .++.....+++.+.+ ..+..+|...++ .+.+..++.+...+|..+.. ..+..+
T Consensus 56 ~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 56 DYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred cHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 445556666655552 333555666665544 346788999998 66788899999999999988 459999
Q ss_pred HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC----CCCHH--HHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG----HSPMR--KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~----G~~~d--eAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (192)
|..+|+++......... -..-.++..+... |-.++ .|...|.++-... ..++...|-++
T Consensus 132 A~~~~~~Aa~~g~~~a~----~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-----------~~~a~~~lg~~ 196 (292)
T COG0790 132 ALKYYEKAAKLGNVEAA----LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-----------NPDAQLLLGRM 196 (292)
T ss_pred HHHHHHHHHHcCChhHH----HHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-----------CHHHHHHHHHH
Confidence 99999999987432110 0122377766552 11233 6777777766552 33566666677
Q ss_pred hhcCccc
Q 029491 149 YVRGELD 155 (192)
Q Consensus 149 ~l~g~~~ 155 (192)
...|..|
T Consensus 197 y~~G~Gv 203 (292)
T COG0790 197 YEKGLGV 203 (292)
T ss_pred HHcCCCC
Confidence 7777543
No 355
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.95 E-value=2.1e+02 Score=26.91 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=78.1
Q ss_pred ChHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--
Q 029491 3 RPDLCFDIIHQVLPY-----NQQEDFIFGILAFSLLELG-----QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-- 70 (192)
Q Consensus 3 ~~~~al~~~~ral~~-----~p~~~~~~~~laf~L~e~g-----~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-- 70 (192)
+.+.++..+.++.+. .-.++.+..-+|..+.... ++..|...+.+|-++. ++.+...+|..+....
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKE 341 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCcc
Confidence 566677777776550 1124555556666666632 6777999999988776 4567888888877666
Q ss_pred -CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHHhhhhh
Q 029491 71 -CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 71 -r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G---~~~deAl~~yd~~i~~~ 126 (192)
+...|..+|..|...- +.....++|+++.... -+.+.|..+|.++....
T Consensus 342 ~d~~~A~~yy~~Aa~~G-------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKAG-------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ccHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 4678999999988652 1223345888875521 16889999999888774
No 356
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.22 E-value=31 Score=23.19 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
+++|.....+|++.+ ..|+.++|+..|.++++.
T Consensus 5 ~~~A~~li~~Av~~d---------------~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 5 LSKAKELISKALKAD---------------EAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHH
Confidence 445555555554444 467777777777777654
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.53 E-value=1.4e+02 Score=28.53 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=56.9
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAA---KKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~---rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
|+...|-+.+..++...|++|..-...+.+.++.|.|+.+.+.. +.+++- -.-+...+-.-+...||+++|...
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---TDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---CchHHHHHHHhhhchhhHHHHHHH
Confidence 66777777788888889999988888899999999999887653 333332 223444455555666666666666
Q ss_pred HHHhHhhccC
Q 029491 79 MEECSSTWSS 88 (192)
Q Consensus 79 ~~~a~~~~p~ 88 (192)
.+..+..--.
T Consensus 380 a~~~l~~eie 389 (831)
T PRK15180 380 AEMMLSNEIE 389 (831)
T ss_pred HHHHhccccC
Confidence 5555544333
No 358
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=49.22 E-value=1.1e+02 Score=23.67 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHh----Hhh
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQHDCCFKEAVQFMEEC----SST 85 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---------------a~A~h~lahvl~~~Gr~~eai~~~~~a----~~~ 85 (192)
|.++|..-...+++-+++-.|++||++--+- .-..|++|+-...+|+.+=.+.+++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4556666667777777777777777654322 357899999999999999999988654 468
Q ss_pred ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHH
Q 029491 86 WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (192)
Q Consensus 86 ~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~y 119 (192)
-|++|.. .++.. --.+| --..|+--|
T Consensus 84 iPQCp~~-~C~af------i~sLG-CCk~ALl~F 109 (140)
T PF10952_consen 84 IPQCPNT-ECEAF------IDSLG-CCKKALLDF 109 (140)
T ss_pred ccCCCCc-chHHH------HHhhh-ccHHHHHHH
Confidence 8888752 33321 12355 555665444
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=49.02 E-value=52 Score=30.65 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=60.5
Q ss_pred CChHHHHHHHHhhcCC-CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Q 029491 2 GRPDLCFDIIHQVLPY-NQQE----------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 2 G~~~~al~~~~ral~~-~p~~----------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G 70 (192)
|++..++..+.+.... .|.+ ++...-+...+...++.+-|....-|.+.+||-..--|-.-|-|+-...
T Consensus 197 ~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~Le 276 (569)
T PF15015_consen 197 GRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLE 276 (569)
T ss_pred HHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHH
Confidence 5667777777775443 2222 2555566777888999999999999999999999999999999998888
Q ss_pred CHHHHHHHH
Q 029491 71 CFKEAVQFM 79 (192)
Q Consensus 71 r~~eai~~~ 79 (192)
|+.||-...
T Consensus 277 Ry~eAarSa 285 (569)
T PF15015_consen 277 RYSEAARSA 285 (569)
T ss_pred HHHHHHHHH
Confidence 888776543
No 360
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.84 E-value=1.8e+02 Score=25.29 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=71.7
Q ss_pred hHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH------HHHHHHHHHhcCCH
Q 029491 4 PDLCFDIIHQVLPYN-----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS------QHALCHVLQHDCCF 72 (192)
Q Consensus 4 ~~~al~~~~ral~~~-----p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A------~h~lahvl~~~Gr~ 72 (192)
+.|+.+.+++|.... |+-+..-.-.|-=..|+-+.++|...+.|++++=-++-.. ...++.++....++
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 456777777777653 3322222223333457778888888888888865444333 34567888888888
Q ss_pred HHHHHHHHHhHhhccCCCCcc-hhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~-~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.|+-.++.+-......+.... .+-..--.=+.||... +|-.|..+|+..-..
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~-Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH-DYVQAEKCYRDCSQI 219 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH-HHHHHHHHhcchhcC
Confidence 888877766443222211100 1122212335566776 899999999775544
No 361
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.79 E-value=96 Score=22.44 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Q 029491 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 26 ~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G 70 (192)
..-|..-...|++.+|++...++-+..++.+-.+-.-+.+=+.+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344555566777777777777776654444444443444444444
No 362
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.58 E-value=41 Score=17.79 Aligned_cols=19 Identities=11% Similarity=0.330 Sum_probs=9.6
Q ss_pred hCCCCHHHHHHHHHHhhhhh
Q 029491 107 EGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 107 ~~G~~~deAl~~yd~~i~~~ 126 (192)
..| ++++|+++|++.....
T Consensus 12 ~~~-~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 12 KAG-RVEEALELFKEMLERG 30 (35)
T ss_pred HCC-CHHHHHHHHHHHHHcC
Confidence 344 5555555555555443
No 363
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.23 E-value=43 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLK 50 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALa 50 (192)
-+...|.-..+.|++++|...+.+|+.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566777888999998888887765
No 364
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=47.75 E-value=79 Score=21.91 Aligned_cols=50 Identities=14% Similarity=-0.064 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH-------HHhcccCCCHHHHHHHHHHHHhcCCHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAK-------KGLKINKHDCWSQHALCHVLQHDCCFK 73 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~r-------rALaL~P~da~A~h~lahvl~~~Gr~~ 73 (192)
-+...|.-+...|++.+|...+. +++.+.|+++--.+-..-+.+++.|.+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 34455666667777776655554 555677888887777777777766654
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.95 E-value=1.2e+02 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAK 46 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~r 46 (192)
-++|..|.++|-.+.+.|++.+|+.++-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3788999999999988888888887653
No 366
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=45.80 E-value=1.8e+02 Score=24.46 Aligned_cols=118 Identities=13% Similarity=0.059 Sum_probs=71.1
Q ss_pred CChHHHHHHHHhhcCC----CCCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHhcc----c---CCCH-------HH
Q 029491 2 GRPDLCFDIIHQVLPY----NQQE----DFIFGILAFSLLELG-QMSDAEEAAKKGLKI----N---KHDC-------WS 58 (192)
Q Consensus 2 G~~~~al~~~~ral~~----~p~~----~~~~~~laf~L~e~g-~~~eAe~~~rrALaL----~---P~da-------~A 58 (192)
||.+.|...+.|+-.. +|+. +..+.+.|..+...+ ++++|....+||+.+ . +..+ -.
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 6777777777776653 3433 355667777788888 999998888888887 2 2222 34
Q ss_pred HHHHHHHHHhcCCHHH---HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 59 QHALCHVLQHDCCFKE---AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 59 ~h~lahvl~~~Gr~~e---ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++.++.++...+..+. ++..++......|+.+.. ..+.+-...- .+ +.+++.....+.|..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~----~~L~l~il~~-~~-~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV----FLLKLEILLK-SF-DEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH----HHHHHHHHhc-cC-ChhHHHHHHHHHHHh
Confidence 6777778877776543 333333344444553321 2222222222 35 677777777777765
No 367
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=45.75 E-value=93 Score=26.99 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~ 117 (192)
|+.-....|+++. -...-++..++-.+.-.|+++..+..+++.+...|-+-. .+--+=.+|+..| +...|+.
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~-----~~~~lm~~y~~~g-~~~~ai~ 208 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP-----AYLRLMEAYLVNG-RQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH-----HHHHHHHHHHHcC-CchHHHH
Confidence 4444444444443 234557778899999999999999999999999988643 2212334456777 8999999
Q ss_pred HHHHhhh
Q 029491 118 IYDNHIW 124 (192)
Q Consensus 118 ~yd~~i~ 124 (192)
.|++.-.
T Consensus 209 ~y~~l~~ 215 (280)
T COG3629 209 AYRQLKK 215 (280)
T ss_pred HHHHHHH
Confidence 9987554
No 368
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.08 E-value=2.1e+02 Score=27.28 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh---cccCCCHH----HHHHHHHHHHhcCC-HHHHHHHHHHhHhhccCC
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDCW----SQHALCHVLQHDCC-FKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrAL---aL~P~da~----A~h~lahvl~~~Gr-~~eai~~~~~a~~~~p~~ 89 (192)
.-....+|.+|...|+-..|+..+...+ ....+|.| |+.-+|-.+-.+|. ..|+.+++.+|.....++
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 3555678999999999999999999998 55556654 68889999999998 999999999999887664
No 369
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.01 E-value=41 Score=28.32 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=9.8
Q ss_pred hCCCCHHHHHHHHHHhhhh
Q 029491 107 EGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 107 ~~G~~~deAl~~yd~~i~~ 125 (192)
+.+ +...|+..+++++..
T Consensus 190 d~~-~l~~Al~~L~rA~~l 207 (230)
T PHA02537 190 DAE-TLQLALALLQRAFQL 207 (230)
T ss_pred Ccc-cHHHHHHHHHHHHHh
Confidence 444 555555555555554
No 370
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=44.20 E-value=68 Score=30.08 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 22 DFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 22 ~~~~~~laf--~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
...-+.++- -|--.|+|.++--...--.+++| ++.+..-+|.++.+..+.+||..++..--
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 334444444 24557888888888888888888 88888888888888888888888876543
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.02 E-value=65 Score=26.85 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
..-|+.+++|......... -|..+..|.+|--|+..| ++++|++.|+.....
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g-~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLG-DYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 3457777777765543221 146778999999999999 999999999988654
No 372
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=43.77 E-value=32 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
+.+|.....+|++.+ ..|+.++|...|.++++.+
T Consensus 3 l~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 3 LEQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHH
Confidence 356777777776665 4499999999999888763
No 373
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=43.53 E-value=85 Score=22.12 Aligned_cols=44 Identities=14% Similarity=-0.063 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ 67 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~ 67 (192)
+....+-.-...+....++..+..+++.+|+||-.+..+-|.+.
T Consensus 9 l~~v~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~ 52 (80)
T PRK15326 9 LDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLS 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 33333333344556777888899999999999988877776653
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=2.9e+02 Score=26.74 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=70.6
Q ss_pred HHHHcCCHHHHHHHHHHHhccc------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH-----hhccCCCCc-
Q 029491 31 SLLELGQMSDAEEAAKKGLKIN------------KHDCWSQHALCHVLQHDCCFKEAVQFMEECS-----STWSSCSSF- 92 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~------------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~-----~~~p~~~~~- 92 (192)
.+....-|++|...+.-|++.. |-+...+-.++++.-++|+++-|-..+++++ ...|....|
T Consensus 247 ~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 247 KFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred EeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 4555677888888888777643 8888999999999999999999999988887 122222111
Q ss_pred -------chhhh-HHHHHHHHH-----hCCCCHHHHHHHHHHhhhhhhCCC-CCCChHHHHHHHHHHHH
Q 029491 93 -------MYTHN-WWHVALCYL-----EGHSPMRKVLEIYDNHIWKELEKP-DAVHPEVYLNALGLLLR 147 (192)
Q Consensus 93 -------~~~h~-~WhlAl~~l-----~~G~~~deAl~~yd~~i~~~~~~~-~~~~~~~~~da~sLL~R 147 (192)
....| .+-++++.. ..| -...|+....--+..+ |+ +...+..++|.-+|.-|
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RG-C~rTA~E~cKlllsLd--p~eDPl~~l~~ID~~ALrar 392 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRG-CWRTALEWCKLLLSLD--PSEDPLGILYLIDIYALRAR 392 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcC--CcCCchhHHHHHHHHHHHHH
Confidence 00011 112444321 245 7788887775555553 43 33333455666665433
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=43.02 E-value=2e+02 Score=24.17 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred CChHHHHHHHHhhcCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCC---------------------
Q 029491 2 GRPDLCFDIIHQVLPYNQ----QEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--NKH--------------------- 54 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p----~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--~P~--------------------- 54 (192)
|++..|...+.++....+ ..+.+..-.+-.+-..|+..+|....+..+.- .+.
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVIS 239 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccc
Confidence 778888888888888652 25677777788899999999999998888871 111
Q ss_pred -----------CHHHHHHHHHHHHhc------CCHHHHHHHHHHhHhhccCC
Q 029491 55 -----------DCWSQHALCHVLQHD------CCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 55 -----------da~A~h~lahvl~~~------Gr~~eai~~~~~a~~~~p~~ 89 (192)
-+.++..+|.-...+ +..++.+..|.++....|..
T Consensus 240 ~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 240 STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 134555566666666 88899999999999998773
No 376
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=42.80 E-value=71 Score=31.46 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=50.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|.+..++-=++-| .+|.-+|-=|.|+.+|+||-+++-+| ||..||...+++
T Consensus 787 ~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA---------------------Gr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA---------------------GRQREAVQVLEQ 842 (1081)
T ss_pred ccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh---------------------cchHHHHHHHHH
Confidence 566777766665333333 34455666788999999988876654 999999999988
Q ss_pred hHhhccCCCCcc-hhhhHHHHHHHHHh
Q 029491 82 CSSTWSSCSSFM-YTHNWWHVALCYLE 107 (192)
Q Consensus 82 a~~~~p~~~~~~-~~h~~WhlAl~~l~ 107 (192)
.....-..+.|. .+..+|-++.-+|.
T Consensus 843 Ltnnav~E~Rf~DA~y~yw~L~~q~Ld 869 (1081)
T KOG1538|consen 843 LTNNAVAESRFNDAAYYYWMLSMQCLD 869 (1081)
T ss_pred hhhhhhhhhhhccchhHHHHhhhhhhh
Confidence 653222111111 12356666655444
No 377
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=42.62 E-value=1.4e+02 Score=24.74 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----HHHHHHHHHHHHhcCCHHHHH
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD----CWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d----a~A~h~lahvl~~~Gr~~eai 76 (192)
+++.....+|.-+. ..+.++|....-++|++.+.+ +...-.|+.++..+|+.++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555555555443 556666777777777765443 666777777777777766653
No 378
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.37 E-value=54 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLK 50 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALa 50 (192)
+...|....+.|++++|...+..|++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667788999998888877654
No 379
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.26 E-value=47 Score=17.28 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=6.9
Q ss_pred HHHHhcCCHHHHHHHHH
Q 029491 64 HVLQHDCCFKEAVQFME 80 (192)
Q Consensus 64 hvl~~~Gr~~eai~~~~ 80 (192)
..+...|++++|...++
T Consensus 8 ~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHHccchHHHHHHHHH
Confidence 33334444444444433
No 380
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=42.02 E-value=2.4e+02 Score=24.64 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=77.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-----------------------------
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN----------------------------- 52 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~----------------------------- 52 (192)
|++.+.+..+++.+...|-==..+.+.+-++...| ++++....+..++.=
T Consensus 113 ~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL~~ 191 (301)
T TIGR03362 113 ADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWLAQ 191 (301)
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHHHh
Confidence 45577888888888886655566777777888888 455444444333311
Q ss_pred ---C---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHH--HhCCCCH
Q 029491 53 ---K---------------HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY--LEGHSPM 112 (192)
Q Consensus 53 ---P---------------~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~--l~~G~~~ 112 (192)
+ .+....-.-+..+...|..++|+.++++.++..+.. +..+.|.+..+. ...| .+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~----R~rf~~rL~~A~l~~~~g-~~ 266 (301)
T TIGR03362 192 HATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREP----RERFHWRLLLARLLEQAG-KA 266 (301)
T ss_pred cccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCCh----HHHHHHHHHHHHHHHHcC-CH
Confidence 0 011112233567788999999999999877654431 445667666655 4567 89
Q ss_pred HHHHHHHHHhhhh
Q 029491 113 RKVLEIYDNHIWK 125 (192)
Q Consensus 113 deAl~~yd~~i~~ 125 (192)
+-|..+|......
T Consensus 267 ~lA~~ll~~L~~~ 279 (301)
T TIGR03362 267 ELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999776655
No 381
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.92 E-value=93 Score=25.90 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHH
Q 029491 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEI 118 (192)
Q Consensus 56 a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~ 118 (192)
......+|..+...|++++|+.+++.+...+...+= .+....-|.+..|....| +.+..+..
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~-~~~~~l~~ 240 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG-DVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-CHHHHHHH
Confidence 345567899999999999999999999866554210 023445566777777777 66666543
No 382
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.76 E-value=48 Score=23.18 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLK 50 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALa 50 (192)
.-..|....|.|+.++|..+|++++.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34445556778899999999888764
No 383
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.27 E-value=2.1e+02 Score=25.13 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMS-DAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~-eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
.+-++.+.+++.-+|-+-.++.-.-++++..|++. +=.+..++.|..+..+-.|+--.-+|+..-+.++.-+++..+.+
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567788889999999999999999999999888 78889999999999999999999999999999999999999999
Q ss_pred hhccCCCC
Q 029491 84 STWSSCSS 91 (192)
Q Consensus 84 ~~~p~~~~ 91 (192)
..+-.+++
T Consensus 175 e~Di~NNS 182 (318)
T KOG0530|consen 175 EEDIRNNS 182 (318)
T ss_pred HHhhhccc
Confidence 77666554
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.22 E-value=65 Score=24.14 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGL 49 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrAL 49 (192)
..+.++-..|..++..|++.+|.++++++|
T Consensus 97 ~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 97 KLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 445666777888888899999998888875
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=38.45 E-value=3.2e+02 Score=25.14 Aligned_cols=58 Identities=10% Similarity=-0.080 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 53 P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
.+++.-|..||.+-..+|+++-|...+.++-+.. -+.+.|...| +.+.-.++-+.+..
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-------------~L~lLy~~~g-~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS-------------GLLLLYSSTG-DREKLSKLAKIAEE 401 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH-------------HHHHHHHHCT--HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc-------------ccHHHHHHhC-CHHHHHHHHHHHHH
Confidence 5588899999999999999999999999876441 1566677777 76655555544443
No 386
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=38.00 E-value=1.7e+02 Score=21.92 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD----------------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~d----------------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p 87 (192)
+..+=.++...|+.+.-+...++.-.++++. ...+.++.|.+...|++..|+..++.-.+.+|
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 3444455667888888888888887777443 57899999999999999999999999999998
No 387
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=46 Score=29.96 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=29.9
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
+....+.+..|.-.+-.+++.+|...-++.-.+......-++++|+.+++.+....|.
T Consensus 284 ~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 284 VGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred hcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 3334444444554444555555555555555555555555555555555555554444
No 388
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.40 E-value=40 Score=19.59 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHhcccCC
Q 029491 37 QMSDAEEAAKKGLKINKH 54 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~P~ 54 (192)
.+++|...++|.+...|+
T Consensus 2 E~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE 19 (32)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 467777777777777665
No 389
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.94 E-value=2.2e+02 Score=27.34 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+.++..+++-+|-....+......|-.+.+-|+.++|-+++++-++-+|+ .+....+.-+..+|-..+|-..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 25 AQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 45556677777766666666677778899999999999999999999999 667777888999999998888877
No 390
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.82 E-value=45 Score=28.09 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHhHhhccCCC
Q 029491 69 DCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.++..+|+.++++|+.++|.+.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCCC
Confidence 3577888888888888888863
No 391
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=34.74 E-value=1.7e+02 Score=27.72 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=56.9
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH-HHHhCCCCHHHHHHHHHHh
Q 029491 44 AAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 44 ~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl-~~l~~G~~~deAl~~yd~~ 122 (192)
-.|.-+.-||+|.-.+..+-.-++.+|.+++-.+.+++..+-.|-. .|.| -+=+ .-|... +|..+..++-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-----~~aw-~ly~s~ELA~~-df~svE~lf~rC 102 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-----EHAW-RLYMSGELARK-DFRSVESLFGRC 102 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-----cHHH-HHHhcchhhhh-hHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999988765542 3443 2211 123444 788888888887
Q ss_pred hhhh
Q 029491 123 IWKE 126 (192)
Q Consensus 123 i~~~ 126 (192)
+...
T Consensus 103 L~k~ 106 (660)
T COG5107 103 LKKS 106 (660)
T ss_pred Hhhh
Confidence 7764
No 392
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.33 E-value=1.7e+02 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 36 GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 36 g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
..+-+|....+.++..+|.|....--+..++...|-...|...++.-
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34556999999999999999999999999999999999999999764
No 393
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=33.92 E-value=3.9e+02 Score=27.27 Aligned_cols=93 Identities=11% Similarity=-0.064 Sum_probs=62.0
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC---CCCcchhhhHHHHHHH
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSS---CSSFMYTHNWWHVALC 104 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~---~~~~~~~h~~WhlAl~ 104 (192)
+...-..|++|...+||--.==|+-. .|....|-++.++-.-.+.-.-+.+|+..... .++ ..--+...|+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 561 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVG--APLEYLGKALV 561 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--CchHHHhHHHH
Confidence 44556789999999999888877754 56777777776654333333334444321110 011 12245568999
Q ss_pred HHhCCCCHHHHHHHHHHhhhhh
Q 029491 105 YLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 105 ~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|-.+| +|+|-++.|.-++.+.
T Consensus 562 ~~~~~-~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 562 YQRLG-EYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHhh-hHHHHHHHHHHHHHhc
Confidence 99998 8999999999998875
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.64 E-value=98 Score=26.44 Aligned_cols=61 Identities=8% Similarity=-0.043 Sum_probs=49.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL 62 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l 62 (192)
++..+|+..++.-+...|.+.-..-.+=-.|+-.|++++|....+-+-.+.|++....-..
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly 75 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY 75 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence 4567888888888889998886665555568899999999999999999999986544333
No 395
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.11 E-value=5e+02 Score=25.76 Aligned_cols=97 Identities=15% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
++.+-|--+-+..+|..+.+.+...+.-=|.| +-...+++-++....+.+.|++.+++|.+..|+.+ + ..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-l--~q- 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-L--CQ- 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH-H--HH-
Confidence 44555777888999999999999999876665 45678899999999999999999999999999864 2 22
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..|.-.+..+ | .-++|+...-+.....
T Consensus 432 ~~~~~~~~~E-~-~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 432 LLMLQSFLAE-D-KSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHh-c-chHHHHHHHHHHHhhh
Confidence 2345555555 5 6899998876655443
No 396
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.62 E-value=2.9e+02 Score=22.84 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=67.3
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhcc
Q 029491 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (192)
Q Consensus 8 l~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p 87 (192)
...+.++..+ ...+...+.||=+...+++++|.+..-.. ++. +|-..-+..++..+|+++-|+++++..-+...
T Consensus 66 ~~~Fa~~f~i--p~~~~~~~~g~W~LD~~~~~~A~~~L~~p-s~~---~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~ 139 (226)
T PF13934_consen 66 AESFARAFGI--PPKYIKFIQGFWLLDHGDFEEALELLSHP-SLI---PWFPDKILQALLRRGDPKLALRYLRAVGPPLS 139 (226)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHhChHhHHHHHHHhCCC-CCC---cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC
Confidence 3334444443 23477789999999999999998887332 222 44455678888889999999999998665432
Q ss_pred CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 88 ~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
.. -...+-...+..| ...||+..-++.-.
T Consensus 140 s~-------~~~~~~~~~La~~-~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 140 SP-------EALTLYFVALANG-LVTEAFSFQRSYPD 168 (226)
T ss_pred CH-------HHHHHHHHHHHcC-CHHHHHHHHHhCch
Confidence 21 1111222237888 89999976655444
No 397
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=32.22 E-value=91 Score=17.02 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=17.4
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHh
Q 029491 42 EEAAKKGLKINKHDCWSQHALCHVLQH 68 (192)
Q Consensus 42 e~~~rrALaL~P~da~A~h~lahvl~~ 68 (192)
.+....++..+|.|-.+++-+-.++..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 345666777777777777766665543
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.60 E-value=72 Score=29.15 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHhhcCCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 029491 1 MGRPDLCFDIIHQVLPYN---------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLK 50 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~---------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa 50 (192)
+||+..|+..++-. .++ +.+...+...||+++.++||.+|.+.+...|-
T Consensus 135 LGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888887765532 222 24456677889999999999999999887764
No 399
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=31.50 E-value=4.2e+02 Score=24.40 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHHHHHHHHhhccCCC
Q 029491 96 HNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQVSIP 175 (192)
Q Consensus 96 h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~~~~~~ 175 (192)
+.|=.+|-..|..| +++-|...|.+. -|..+|++=.-..|. .+..+.|++....+.+..
T Consensus 348 ~~W~~Lg~~AL~~g-~~~lAe~c~~k~----------------~d~~~L~lLy~~~g~----~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 348 EKWKQLGDEALRQG-NIELAEECYQKA----------------KDFSGLLLLYSSTGD----REKLSKLAKIAEERGDIN 406 (443)
T ss_dssp HHHHHHHHHHHHTT-BHHHHHHHHHHC----------------T-HHHHHHHHHHCT-----HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHhh----------------cCccccHHHHHHhCC----HHHHHHHHHHHHHccCHH
Confidence 45667898889998 899998888552 145666665666664 577788888777766655
Q ss_pred CcCc
Q 029491 176 SIFF 179 (192)
Q Consensus 176 ~~f~ 179 (192)
.+|.
T Consensus 407 ~af~ 410 (443)
T PF04053_consen 407 IAFQ 410 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 400
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=31.39 E-value=42 Score=23.42 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=16.7
Q ss_pred HHHHcCCHHHHHHHHHHHhccc
Q 029491 31 SLLELGQMSDAEEAAKKGLKIN 52 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~ 52 (192)
.+...|++++|++..++|..++
T Consensus 46 ~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 46 SRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred HHHHCCCHHHHHHHHHHhHHHH
Confidence 4456888888888888887654
No 401
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=29.36 E-value=1.2e+02 Score=17.79 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHhHh
Q 029491 57 WSQHALCHVLQHDCCF---KEAVQFMEECSS 84 (192)
Q Consensus 57 ~A~h~lahvl~~~Gr~---~eai~~~~~a~~ 84 (192)
.+..++|++|...... .+||..+++..+
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCC
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3455666666655543 456666655544
No 402
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.92 E-value=1.5e+02 Score=28.54 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcc-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 19 QQEDFIFGILAFSLLE--LGQMSDAEEAAKKGLKI-----NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 19 p~~~~~~~~laf~L~e--~g~~~eAe~~~rrALaL-----~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
..+|.++++||-..+- +..-..+++++.+|+.. +-.+.+-+.-+|..++..+++.||+...-++..
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999986543 23334477788888774 356778888999999999999999877666643
No 403
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=28.88 E-value=1.1e+02 Score=16.91 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHh
Q 029491 72 FKEAVQFMEECSS 84 (192)
Q Consensus 72 ~~eai~~~~~a~~ 84 (192)
.++|+.+++++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4666666666554
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.38 E-value=5e+02 Score=24.37 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=76.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhc-----ccCCCHHHHHHHHHHHHhcC----
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLE-----LGQMSDAEEAAKKGLK-----INKHDCWSQHALCHVLQHDC---- 70 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e-----~g~~~eAe~~~rrALa-----L~P~da~A~h~lahvl~~~G---- 70 (192)
..+...++.+... ++..+...+|..+.+ ..+.+.|...+++|.. ..-.++.|.+.+|.++....
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 3455555544433 556666666665544 4589999999998876 11226779999999998865
Q ss_pred -CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCC--CCHHHHHHHHHHhhhhh
Q 029491 71 -CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH--SPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 71 -r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G--~~~deAl~~yd~~i~~~ 126 (192)
+.+.|+.++.++...... .+.. .+|.++.... .++..|+.+|..+....
T Consensus 307 ~d~~~A~~~~~~aA~~g~~-----~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNP-----DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccHHHHHHHHHHHHhcCCc-----hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 566799999999876433 2223 3888876632 24679999998887663
No 405
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=27.97 E-value=1.3e+02 Score=20.04 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=13.4
Q ss_pred hcCCHHHHHHHHHHhHhhc
Q 029491 68 HDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~ 86 (192)
..|+.++|+..|.++++.+
T Consensus 18 ~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 18 EDGNYEEALELYKEALDYL 36 (75)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 4477777777777777654
No 406
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.41 E-value=1.1e+02 Score=16.26 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 029491 61 ALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 61 ~lahvl~~~Gr~~eai~~~~~a 82 (192)
.+-.++...|+++.+...++.-
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444445555554444443
No 407
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.36 E-value=3.1e+02 Score=21.65 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=34.8
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+..+|+-|.=++.++.-..-+..+|.-+..+|.++...|...++-+.+.+|-+
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 567777777777777776665666777888888888888888888777777653
No 408
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=27.21 E-value=1.1e+02 Score=23.21 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKH 54 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~ 54 (192)
.+|-.|...|++++|..++-+||.+.|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455666677777777777777777654
No 409
>PRK11619 lytic murein transglycosylase; Provisional
Probab=26.68 E-value=5e+02 Score=25.16 Aligned_cols=50 Identities=10% Similarity=-0.102 Sum_probs=26.4
Q ss_pred HcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 34 e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
..++.+.....+.+--.-..+..-...-+|-+++.+|+.++|..+|+++.
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455444444333222122345556666666666666666666666653
No 410
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.60 E-value=4.6e+02 Score=27.59 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
+.|.+++.+|-+....|+..+|++.+-+| +||-....+-.+-...|..++=+.++.-+..
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 56888999999999999999999998765 7888899999999999999999999887764
No 411
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=24.15 E-value=1.3e+02 Score=30.35 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH----HHHHhcC-CHHHHHHHH
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC----HVLQHDC-CFKEAVQFM 79 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la----hvl~~~G-r~~eai~~~ 79 (192)
.-+.+|.-+|.-|++.|++++|-+++-.|+.||..+.-=..++- --+...| ++++|+..+
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 34677888888899999999999999999999976653222221 1223445 777777665
No 412
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=23.10 E-value=55 Score=24.37 Aligned_cols=40 Identities=5% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhcCcccchhchH-HHHHHHHhhccCCCCcCc
Q 029491 140 NALGLLLRVYVRGELDVFGNRL-KVLADCVADQVSIPSIFF 179 (192)
Q Consensus 140 da~sLL~Rl~l~g~~~~~~~rw-~~l~~~~~~~~~~~~~f~ 179 (192)
.-+.--|++-+.+.-......| +.|..-+...+.+.|+|+
T Consensus 18 ~~~~~~~~~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~ 58 (125)
T PF06744_consen 18 SPADQAWKLVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFD 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4444456666655544567899 669999999999999998
No 413
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=22.83 E-value=77 Score=24.54 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.7
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMS 39 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~ 39 (192)
|++.-|...+..++..+|++..+....+-+|...|.-.
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 66777777778888888888888888888887766544
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.31 E-value=7.2e+02 Score=24.07 Aligned_cols=93 Identities=10% Similarity=-0.018 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHH
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~ 104 (192)
...+|..+...+..++|..-...+.... .+...+.....+-...++.+....++...-+.-.. . ...++| +|-+
T Consensus 282 ~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~--~rw~YW--~aRa 355 (644)
T PRK11619 282 RDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-K--DEWRYW--QADL 355 (644)
T ss_pred HHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-C--HhhHHH--HHHH
Confidence 3444444444332344444444333222 23333344444444778887777777664322212 1 145566 7888
Q ss_pred HHhCCCCHHHHHHHHHHhhh
Q 029491 105 YLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 105 ~l~~G~~~deAl~~yd~~i~ 124 (192)
+..+| +.++|..+|.+...
T Consensus 356 ~~~~g-~~~~A~~~~~~~a~ 374 (644)
T PRK11619 356 LLEQG-RKAEAEEILRQLMQ 374 (644)
T ss_pred HHHcC-CHHHHHHHHHHHhc
Confidence 78888 89999999988643
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.94 E-value=2e+02 Score=23.74 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=24.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (192)
Q Consensus 29 af~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv 65 (192)
-.+.++.|.|++|++..+|-.. +|++..-..-|.++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 3467778888888888888777 77776554444443
No 416
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=21.86 E-value=3.2e+02 Score=19.88 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=36.8
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
...+.........+..+..+|.++.-+..+...+.. -+..+.+.+++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~-~~~~~ll~~l~~ 65 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK-YDPQKEIERLDN 65 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH-HCHHHHHHHHHh
Confidence 456788889999999999888777766667666654 466777888884
No 417
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=21.11 E-value=1.1e+02 Score=27.33 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 39 SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 39 ~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
.+|++++++|+....+ |..-|||.+++.|+.+-|+
T Consensus 17 kkA~~l~~~av~~Eq~---------------G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQD---------------GSLYDAINFYRDALQIVPD 51 (366)
T ss_pred HHHHHHHHHHHHHhhc---------------CcHHHHHHHHHhhhcCCch
No 418
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.02 E-value=4.6e+02 Score=25.95 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=63.7
Q ss_pred ChHHHHHHHHhhcCCCCCC----HHHHHH--HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQE----DFIFGI--LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~----~~~~~~--laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
++..+++.+..-+...|.| .++.+. ++..+....++|+|.+.++.|=+.+|+++--..-+.-+..-.|..++|+
T Consensus 369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL 448 (872)
T KOG4814|consen 369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEAL 448 (872)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHH
Confidence 3455667777766665533 344444 4445556669999999999999999999999999999999999999999
Q ss_pred HHHHHhHhh
Q 029491 77 QFMEECSST 85 (192)
Q Consensus 77 ~~~~~a~~~ 85 (192)
..+..-...
T Consensus 449 ~~~~~~~s~ 457 (872)
T KOG4814|consen 449 TCLQKIKSS 457 (872)
T ss_pred HHHHHHHhh
Confidence 988776643
No 419
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.94 E-value=1.6e+02 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
...+|-.+..+|+.++|+..+-+|+...|+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 345788888889988888888888877666
No 420
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.42 E-value=2.6e+02 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH 68 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~ 68 (192)
..+-.-+.+.|+.+|..-+++.|++--+|..+-+.+.-
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 44444566779999999999999998888777666543
Done!