Query 029491
Match_columns 192
No_of_seqs 199 out of 359
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 22:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 99.8 8.4E-18 2.9E-22 129.8 12.6 111 10-126 24-134 (151)
2 4gyw_A UDP-N-acetylglucosamine 99.7 5.3E-17 1.8E-21 153.4 18.4 156 1-170 22-177 (723)
3 2pl2_A Hypothetical conserved 99.7 9.8E-17 3.3E-21 128.3 16.6 120 1-126 18-148 (217)
4 2vgx_A Chaperone SYCD; alterna 99.7 1.1E-16 3.7E-21 121.7 12.9 112 9-126 8-119 (148)
5 2pl2_A Hypothetical conserved 99.7 1.5E-16 5.2E-21 127.2 13.8 119 1-126 52-181 (217)
6 2xcb_A PCRH, regulatory protei 99.7 5.2E-16 1.8E-20 115.8 13.8 112 9-126 5-116 (142)
7 4ga2_A E3 SUMO-protein ligase 99.7 1.8E-16 6.2E-21 120.3 10.9 119 2-126 11-130 (150)
8 4gco_A Protein STI-1; structur 99.7 6.6E-16 2.2E-20 114.5 13.1 110 11-126 2-111 (126)
9 2h6f_A Protein farnesyltransfe 99.7 6.2E-16 2.1E-20 135.8 13.6 136 1-147 110-246 (382)
10 4gyw_A UDP-N-acetylglucosamine 99.6 1.3E-15 4.5E-20 143.9 12.7 120 1-126 56-175 (723)
11 3urz_A Uncharacterized protein 99.6 2.1E-15 7.3E-20 119.7 10.6 122 1-126 17-187 (208)
12 3vtx_A MAMA; tetratricopeptide 99.6 3.6E-14 1.2E-18 108.5 16.8 120 1-126 18-137 (184)
13 3vtx_A MAMA; tetratricopeptide 99.6 1.6E-14 5.4E-19 110.5 14.3 120 1-126 52-171 (184)
14 4i17_A Hypothetical protein; T 99.6 3.3E-14 1.1E-18 112.5 15.0 125 1-126 20-147 (228)
15 3gyz_A Chaperone protein IPGC; 99.6 7.8E-15 2.7E-19 113.0 10.7 89 1-89 49-137 (151)
16 1a17_A Serine/threonine protei 99.6 3E-14 1E-18 105.9 12.9 121 1-125 26-146 (166)
17 4gco_A Protein STI-1; structur 99.6 1.5E-14 5.2E-19 107.0 11.2 90 1-90 26-115 (126)
18 2e2e_A Formate-dependent nitri 99.6 3.5E-14 1.2E-18 108.4 12.9 119 2-126 24-145 (177)
19 2h6f_A Protein farnesyltransfe 99.6 1.2E-14 4.2E-19 127.5 11.5 121 1-126 144-270 (382)
20 3qky_A Outer membrane assembly 99.6 2.2E-13 7.6E-18 110.2 17.9 123 1-126 28-178 (261)
21 2fo7_A Synthetic consensus TPR 99.6 9.8E-14 3.3E-18 98.1 13.7 119 2-126 15-133 (136)
22 3as5_A MAMA; tetratricopeptide 99.6 5E-13 1.7E-17 99.7 17.6 119 2-126 22-140 (186)
23 2vq2_A PILW, putative fimbrial 99.6 5.2E-13 1.8E-17 103.1 18.1 122 1-126 21-143 (225)
24 1w3b_A UDP-N-acetylglucosamine 99.5 1.4E-13 4.9E-18 116.6 16.0 119 1-125 216-334 (388)
25 3as5_A MAMA; tetratricopeptide 99.5 1.5E-13 5E-18 102.7 14.1 120 1-126 55-174 (186)
26 2r5s_A Uncharacterized protein 99.5 6.7E-14 2.3E-18 107.7 12.2 118 1-125 19-137 (176)
27 3upv_A Heat shock protein STI1 99.5 1E-13 3.5E-18 100.3 12.1 102 19-126 1-102 (126)
28 4i17_A Hypothetical protein; T 99.5 6E-14 2E-18 111.0 11.7 120 1-126 55-210 (228)
29 4gcn_A Protein STI-1; structur 99.5 8.9E-14 3.1E-18 102.7 11.9 106 20-126 6-113 (127)
30 2pzi_A Probable serine/threoni 99.5 1.4E-14 4.7E-19 135.0 9.2 119 1-126 446-564 (681)
31 1w3b_A UDP-N-acetylglucosamine 99.5 2.4E-13 8.3E-18 115.2 16.2 120 1-126 182-301 (388)
32 1hxi_A PEX5, peroxisome target 99.5 2.9E-14 1E-18 104.6 9.0 96 24-125 19-114 (121)
33 4eqf_A PEX5-related protein; a 99.5 4.9E-14 1.7E-18 118.3 11.6 120 1-126 190-311 (365)
34 2vsy_A XCC0866; transferase, g 99.5 1.7E-13 5.7E-18 123.5 15.8 118 2-125 3-120 (568)
35 1hh8_A P67PHOX, NCF-2, neutrop 99.5 3.7E-13 1.2E-17 104.7 15.5 122 1-126 19-151 (213)
36 2vgx_A Chaperone SYCD; alterna 99.5 8E-14 2.8E-18 105.7 10.7 91 1-91 34-124 (148)
37 4ga2_A E3 SUMO-protein ligase 99.5 7.1E-14 2.4E-18 105.9 10.0 104 1-109 44-148 (150)
38 2xcb_A PCRH, regulatory protei 99.5 9.6E-14 3.3E-18 103.4 10.4 90 1-90 31-120 (142)
39 3sz7_A HSC70 cochaperone (SGT) 99.5 2.7E-13 9.2E-18 102.8 13.0 101 19-125 8-108 (164)
40 4eqf_A PEX5-related protein; a 99.5 4.2E-13 1.4E-17 112.6 15.5 124 2-126 79-243 (365)
41 3sz7_A HSC70 cochaperone (SGT) 99.5 8.3E-13 2.8E-17 100.0 15.5 91 1-91 24-114 (164)
42 1fch_A Peroxisomal targeting s 99.5 1.5E-12 5.2E-17 108.4 18.4 125 1-126 77-247 (368)
43 2vsy_A XCC0866; transferase, g 99.5 3.1E-13 1.1E-17 121.8 15.1 120 1-126 36-158 (568)
44 2ho1_A Type 4 fimbrial biogene 99.5 1.5E-12 5.1E-17 103.3 17.3 120 1-126 50-171 (252)
45 2q7f_A YRRB protein; TPR, prot 99.5 9E-13 3.1E-17 103.4 15.8 118 2-125 71-188 (243)
46 3uq3_A Heat shock protein STI1 99.5 3.4E-13 1.2E-17 106.3 13.2 116 5-126 122-237 (258)
47 3hym_B Cell division cycle pro 99.5 1.3E-12 4.5E-17 106.5 17.1 119 2-126 70-189 (330)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.2E-13 7.4E-18 108.9 12.1 119 2-126 19-141 (275)
49 4abn_A Tetratricopeptide repea 99.5 2.8E-13 9.6E-18 120.8 13.8 119 1-126 150-288 (474)
50 2q7f_A YRRB protein; TPR, prot 99.5 7.4E-13 2.5E-17 103.9 14.7 120 1-126 36-155 (243)
51 4abn_A Tetratricopeptide repea 99.5 1.4E-13 4.9E-18 122.7 11.8 119 1-126 115-251 (474)
52 1fch_A Peroxisomal targeting s 99.5 6E-13 2.1E-17 110.8 14.6 119 2-126 195-315 (368)
53 2pzi_A Probable serine/threoni 99.5 2.7E-13 9.3E-18 126.2 13.8 119 1-126 404-530 (681)
54 1hxi_A PEX5, peroxisome target 99.5 2.1E-13 7.1E-18 100.1 10.2 89 1-89 30-118 (121)
55 3k9i_A BH0479 protein; putativ 99.5 5.4E-14 1.8E-18 101.5 6.9 90 1-90 3-95 (117)
56 2kck_A TPR repeat; tetratricop 99.5 3.1E-13 1E-17 93.6 10.6 104 17-126 1-107 (112)
57 3qou_A Protein YBBN; thioredox 99.5 3.9E-13 1.3E-17 112.0 13.2 120 1-126 130-249 (287)
58 3q49_B STIP1 homology and U bo 99.5 7.8E-13 2.7E-17 96.0 13.1 104 17-126 4-107 (137)
59 2hr2_A Hypothetical protein; a 99.5 1.1E-13 3.8E-18 108.7 9.1 91 1-91 24-137 (159)
60 2vyi_A SGTA protein; chaperone 99.5 3.6E-13 1.2E-17 95.3 10.8 101 18-124 8-108 (131)
61 3cv0_A Peroxisome targeting si 99.5 1E-12 3.5E-17 107.0 14.6 119 2-126 152-270 (327)
62 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 7.9E-17 102.2 16.2 120 1-126 84-205 (252)
63 1p5q_A FKBP52, FK506-binding p 99.5 4.3E-13 1.5E-17 114.6 12.3 119 1-125 160-294 (336)
64 2hr2_A Hypothetical protein; a 99.5 1.2E-12 4.2E-17 102.7 13.9 100 21-126 10-132 (159)
65 2lni_A Stress-induced-phosphop 99.5 7.8E-13 2.7E-17 94.4 11.8 103 17-125 11-113 (133)
66 3upv_A Heat shock protein STI1 99.5 5E-13 1.7E-17 96.6 10.9 87 1-87 17-103 (126)
67 3hym_B Cell division cycle pro 99.5 1.1E-12 3.9E-17 106.9 14.1 118 2-125 173-299 (330)
68 2vq2_A PILW, putative fimbrial 99.5 9.3E-13 3.2E-17 101.7 12.7 120 1-126 55-177 (225)
69 3uq3_A Heat shock protein STI1 99.5 1.2E-12 4.1E-17 103.1 13.2 120 1-126 51-203 (258)
70 3ieg_A DNAJ homolog subfamily 99.4 4.7E-12 1.6E-16 103.9 17.1 122 1-126 16-150 (359)
71 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.2E-12 4.2E-17 104.4 13.1 119 1-126 56-174 (275)
72 3qou_A Protein YBBN; thioredox 99.4 4.6E-13 1.6E-17 111.6 10.7 121 1-125 164-284 (287)
73 3u4t_A TPR repeat-containing p 99.4 1.1E-12 3.7E-17 105.1 12.5 116 2-125 51-171 (272)
74 1wao_1 Serine/threonine protei 99.4 2.4E-13 8.1E-18 121.9 9.3 114 1-120 19-134 (477)
75 3qky_A Outer membrane assembly 99.4 1.6E-12 5.5E-17 105.1 13.3 123 1-126 65-225 (261)
76 3cv0_A Peroxisome targeting si 99.4 8.6E-13 3E-17 107.4 11.6 125 1-126 185-316 (327)
77 3ieg_A DNAJ homolog subfamily 99.4 1.2E-11 4E-16 101.5 18.1 88 2-89 134-221 (359)
78 1p5q_A FKBP52, FK506-binding p 99.4 2.9E-13 1E-17 115.6 8.0 117 4-126 129-260 (336)
79 2ond_A Cleavage stimulation fa 99.4 1E-11 3.4E-16 103.6 16.9 115 4-126 80-199 (308)
80 2lni_A Stress-induced-phosphop 99.4 8.6E-12 2.9E-16 88.9 14.1 104 1-109 29-132 (133)
81 1na0_A Designed protein CTPR3; 99.4 3.1E-12 1.1E-16 89.6 11.6 102 18-125 4-106 (125)
82 2y4t_A DNAJ homolog subfamily 99.4 6.5E-12 2.2E-16 107.5 15.6 124 1-126 39-173 (450)
83 3fp2_A TPR repeat-containing p 99.4 3.7E-12 1.3E-16 111.3 14.3 120 1-126 289-408 (537)
84 4gcn_A Protein STI-1; structur 99.4 1.2E-12 4E-17 96.6 9.4 88 1-88 21-115 (127)
85 3u4t_A TPR repeat-containing p 99.4 7.9E-12 2.7E-16 100.0 14.9 119 1-126 16-138 (272)
86 3q49_B STIP1 homology and U bo 99.4 2.2E-12 7.5E-17 93.6 10.2 89 1-89 22-110 (137)
87 3mkr_A Coatomer subunit epsilo 99.4 4.7E-12 1.6E-16 106.1 13.6 119 1-125 143-264 (291)
88 1qqe_A Vesicular transport pro 99.4 3.2E-12 1.1E-16 106.3 12.2 125 1-126 90-229 (292)
89 2vyi_A SGTA protein; chaperone 99.4 1.3E-11 4.6E-16 87.0 13.8 106 1-112 25-130 (131)
90 1zu2_A Mitochondrial import re 99.4 3.2E-13 1.1E-17 105.9 5.4 88 2-89 16-124 (158)
91 3mkr_A Coatomer subunit epsilo 99.4 2E-11 6.9E-16 102.2 16.5 131 1-147 114-246 (291)
92 1na0_A Designed protein CTPR3; 99.4 4.3E-11 1.5E-15 83.7 15.7 104 1-109 22-125 (125)
93 2yhc_A BAMD, UPF0169 lipoprote 99.4 9.2E-12 3.1E-16 99.4 13.7 125 1-126 17-177 (225)
94 3rkv_A Putative peptidylprolyl 99.4 1.8E-12 6E-17 98.0 8.9 90 1-90 24-131 (162)
95 2y4t_A DNAJ homolog subfamily 99.4 1.5E-11 5E-16 105.3 15.7 122 2-125 191-324 (450)
96 2xpi_A Anaphase-promoting comp 99.4 2.4E-11 8.4E-16 107.8 17.6 123 2-126 421-546 (597)
97 3urz_A Uncharacterized protein 99.4 8.5E-12 2.9E-16 98.7 13.2 100 21-126 3-118 (208)
98 2ond_A Cleavage stimulation fa 99.4 9.3E-12 3.2E-16 103.8 14.0 119 1-125 112-232 (308)
99 2c2l_A CHIP, carboxy terminus 99.4 2.6E-12 9E-17 106.8 10.4 123 1-126 17-165 (281)
100 1elr_A TPR2A-domain of HOP; HO 99.4 1.4E-11 4.8E-16 87.1 12.4 107 19-126 1-109 (131)
101 2fbn_A 70 kDa peptidylprolyl i 99.4 4.1E-12 1.4E-16 99.0 10.4 116 1-122 51-183 (198)
102 2kck_A TPR repeat; tetratricop 99.4 6.6E-12 2.3E-16 86.7 10.4 90 1-90 19-111 (112)
103 2dba_A Smooth muscle cell asso 99.4 9.7E-12 3.3E-16 90.4 11.6 106 15-126 21-129 (148)
104 1elw_A TPR1-domain of HOP; HOP 99.4 1.1E-11 3.9E-16 86.1 11.5 98 22-125 4-101 (118)
105 3edt_B KLC 2, kinesin light ch 99.3 4.4E-12 1.5E-16 100.7 10.2 123 1-125 98-281 (283)
106 1elw_A TPR1-domain of HOP; HOP 99.3 2E-11 6.9E-16 84.8 12.4 90 1-90 17-106 (118)
107 2xev_A YBGF; tetratricopeptide 99.3 4.9E-11 1.7E-15 85.4 14.7 100 24-126 4-106 (129)
108 1qqe_A Vesicular transport pro 99.3 6.1E-12 2.1E-16 104.5 11.3 125 1-126 50-188 (292)
109 2xpi_A Anaphase-promoting comp 99.3 4.2E-11 1.4E-15 106.3 16.9 118 2-125 353-470 (597)
110 3gw4_A Uncharacterized protein 99.3 9.3E-12 3.2E-16 95.4 10.8 125 1-126 39-177 (203)
111 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.4E-11 4.7E-16 98.3 12.2 122 1-125 54-213 (225)
112 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 8.3E-12 2.8E-16 111.0 12.0 119 1-125 281-415 (457)
113 3fp2_A TPR repeat-containing p 99.3 2.6E-11 8.8E-16 105.9 14.5 119 1-126 256-374 (537)
114 2c2l_A CHIP, carboxy terminus 99.3 1.7E-11 6E-16 101.8 12.7 102 19-126 1-102 (281)
115 2dba_A Smooth muscle cell asso 99.3 2.6E-11 8.9E-16 88.1 12.2 90 1-90 41-133 (148)
116 2kat_A Uncharacterized protein 99.3 1.3E-11 4.6E-16 88.0 10.3 86 5-90 2-87 (115)
117 3edt_B KLC 2, kinesin light ch 99.3 7.7E-12 2.6E-16 99.3 9.8 122 1-125 56-198 (283)
118 2gw1_A Mitochondrial precursor 99.3 1.1E-11 3.9E-16 107.1 11.4 120 1-126 283-402 (514)
119 2xev_A YBGF; tetratricopeptide 99.3 2E-11 6.8E-16 87.5 10.9 90 1-90 15-110 (129)
120 2gw1_A Mitochondrial precursor 99.3 4.1E-11 1.4E-15 103.6 14.8 125 1-126 317-445 (514)
121 1a17_A Serine/threonine protei 99.3 4.8E-11 1.6E-15 88.3 12.8 100 21-126 12-111 (166)
122 2fbn_A 70 kDa peptidylprolyl i 99.3 9.7E-12 3.3E-16 96.8 9.0 101 20-126 36-152 (198)
123 3rkv_A Putative peptidylprolyl 99.3 2.7E-11 9.3E-16 91.4 11.0 100 21-126 10-127 (162)
124 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.9E-12 9.8E-17 114.0 6.3 116 5-126 251-381 (457)
125 3k9i_A BH0479 protein; putativ 99.3 4.3E-12 1.5E-16 91.4 6.1 87 34-126 2-91 (117)
126 3ro3_A PINS homolog, G-protein 99.3 2.2E-11 7.5E-16 88.5 9.9 125 1-126 22-159 (164)
127 2l6j_A TPR repeat-containing p 99.2 2.8E-12 9.5E-17 89.5 3.5 100 21-121 3-103 (111)
128 3nf1_A KLC 1, kinesin light ch 99.2 1.9E-11 6.3E-16 98.8 8.8 124 1-126 124-308 (311)
129 1ihg_A Cyclophilin 40; ppiase 99.2 2.4E-11 8.4E-16 105.6 9.7 111 1-117 236-362 (370)
130 2if4_A ATFKBP42; FKBP-like, al 99.2 1.1E-11 3.8E-16 106.0 7.4 120 1-126 192-329 (338)
131 3nf1_A KLC 1, kinesin light ch 99.2 5.9E-11 2E-15 95.8 11.2 122 1-125 40-182 (311)
132 3gw4_A Uncharacterized protein 99.2 3.8E-10 1.3E-14 86.3 14.9 125 1-126 5-137 (203)
133 2fo7_A Synthetic consensus TPR 99.2 6.2E-10 2.1E-14 78.2 14.6 98 23-126 2-99 (136)
134 1zu2_A Mitochondrial import re 99.2 1.4E-11 4.9E-16 96.5 6.0 90 32-126 12-121 (158)
135 3ma5_A Tetratricopeptide repea 99.2 7.2E-11 2.5E-15 83.3 9.1 74 17-90 2-75 (100)
136 4g1t_A Interferon-induced prot 99.2 1.6E-10 5.6E-15 99.8 12.9 119 2-126 227-364 (472)
137 3ulq_A Response regulator aspa 99.2 1.5E-10 5.1E-15 98.4 12.3 124 1-125 116-253 (383)
138 1elr_A TPR2A-domain of HOP; HO 99.2 1E-10 3.5E-15 82.6 9.3 88 1-88 17-111 (131)
139 2ifu_A Gamma-SNAP; membrane fu 99.2 7.5E-11 2.6E-15 98.5 10.0 123 1-126 89-224 (307)
140 1na3_A Designed protein CTPR2; 99.2 1.4E-10 4.8E-15 78.1 9.5 85 20-109 7-91 (91)
141 2e2e_A Formate-dependent nitri 99.2 1E-10 3.5E-15 88.9 9.7 90 1-90 57-149 (177)
142 3ulq_A Response regulator aspa 99.2 1.2E-10 3.9E-15 99.2 10.9 125 1-126 156-294 (383)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.9E-10 6.6E-15 89.2 10.6 89 1-89 50-154 (213)
144 4a1s_A PINS, partner of inscut 99.2 1.3E-10 4.4E-15 98.5 10.3 124 1-125 61-212 (411)
145 2qfc_A PLCR protein; TPR, HTH, 99.1 1.3E-09 4.5E-14 89.9 15.4 125 1-126 128-267 (293)
146 4f3v_A ESX-1 secretion system 99.1 3.2E-10 1.1E-14 96.3 11.8 122 1-126 115-238 (282)
147 3ro2_A PINS homolog, G-protein 99.1 2.7E-10 9.4E-15 91.8 10.5 124 1-125 18-172 (338)
148 1hz4_A MALT regulatory protein 99.1 2.7E-10 9.3E-15 96.0 10.9 123 2-125 67-203 (373)
149 3u3w_A Transcriptional activat 99.1 5.8E-10 2E-14 92.1 12.6 125 2-126 129-267 (293)
150 1hz4_A MALT regulatory protein 99.1 1.4E-09 4.8E-14 91.6 15.1 125 1-126 27-165 (373)
151 4a1s_A PINS, partner of inscut 99.1 1.1E-10 3.9E-15 98.8 8.4 125 1-126 236-373 (411)
152 4g1t_A Interferon-induced prot 99.1 3.6E-10 1.2E-14 97.6 11.5 119 2-126 152-277 (472)
153 3sf4_A G-protein-signaling mod 99.1 1.8E-10 6.2E-15 96.4 9.1 125 1-126 200-337 (406)
154 2l6j_A TPR repeat-containing p 99.1 1.8E-11 6.1E-16 85.4 2.4 83 1-83 17-105 (111)
155 1ouv_A Conserved hypothetical 99.1 2.1E-09 7.3E-14 86.8 15.1 112 2-125 20-143 (273)
156 3ro2_A PINS homolog, G-protein 99.1 1.9E-10 6.5E-15 92.8 8.5 123 2-125 197-332 (338)
157 2qfc_A PLCR protein; TPR, HTH, 99.1 2E-09 6.7E-14 88.9 14.6 124 1-126 88-226 (293)
158 2ifu_A Gamma-SNAP; membrane fu 99.1 3.5E-10 1.2E-14 94.5 9.8 124 1-126 49-185 (307)
159 2kat_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 80.4 8.5 82 39-126 2-83 (115)
160 3sf4_A G-protein-signaling mod 99.1 4.2E-10 1.4E-14 94.1 9.8 125 1-126 22-177 (406)
161 2ooe_A Cleavage stimulation fa 99.1 3.7E-09 1.3E-13 94.1 16.5 115 6-126 304-421 (530)
162 3dra_A Protein farnesyltransfe 99.1 1.4E-09 4.6E-14 93.1 12.9 117 4-126 49-176 (306)
163 1ouv_A Conserved hypothetical 99.1 9.4E-09 3.2E-13 83.0 17.0 112 2-125 56-179 (273)
164 1dce_A Protein (RAB geranylger 99.0 5.1E-09 1.8E-13 96.1 16.3 135 4-148 45-191 (567)
165 2ooe_A Cleavage stimulation fa 99.0 1.7E-09 5.8E-14 96.3 12.7 119 1-125 334-454 (530)
166 1wao_1 Serine/threonine protei 99.0 1.9E-10 6.7E-15 102.9 5.8 99 22-126 6-104 (477)
167 1na3_A Designed protein CTPR2; 99.0 1.5E-09 5.1E-14 72.9 8.4 70 1-70 22-91 (91)
168 2kc7_A BFR218_protein; tetratr 99.0 2.6E-09 8.7E-14 73.6 9.8 87 26-126 4-91 (99)
169 1ihg_A Cyclophilin 40; ppiase 99.0 4.7E-09 1.6E-13 91.1 13.3 99 22-126 223-337 (370)
170 3q15_A PSP28, response regulat 99.0 2E-09 6.8E-14 91.6 10.4 123 1-126 154-291 (378)
171 3dra_A Protein farnesyltransfe 99.0 6.1E-09 2.1E-13 89.1 13.2 118 3-126 84-216 (306)
172 2kc7_A BFR218_protein; tetratr 99.0 8.1E-10 2.8E-14 76.2 6.3 81 2-90 14-95 (99)
173 3ly7_A Transcriptional activat 99.0 3.6E-09 1.2E-13 93.0 11.8 115 4-126 215-340 (372)
174 2r5s_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 83.8 7.5 120 1-125 53-173 (176)
175 3rjv_A Putative SEL1 repeat pr 99.0 7.6E-09 2.6E-13 82.1 12.0 115 3-125 68-197 (212)
176 3q15_A PSP28, response regulat 99.0 3.4E-09 1.2E-13 90.2 10.4 124 1-125 114-251 (378)
177 3ro3_A PINS homolog, G-protein 99.0 7E-09 2.4E-13 75.0 10.7 104 22-126 9-119 (164)
178 2if4_A ATFKBP42; FKBP-like, al 98.9 7.2E-10 2.5E-14 94.6 6.0 102 19-126 176-294 (338)
179 1dce_A Protein (RAB geranylger 98.9 2.4E-09 8.1E-14 98.4 9.9 117 4-126 89-222 (567)
180 3dss_A Geranylgeranyl transfer 98.9 4.9E-08 1.7E-12 84.5 17.1 133 5-148 47-192 (331)
181 3u3w_A Transcriptional activat 98.9 1.6E-08 5.3E-13 83.4 13.3 123 2-126 89-226 (293)
182 3q7a_A Farnesyltransferase alp 98.9 8.2E-09 2.8E-13 90.1 11.2 119 2-126 68-197 (349)
183 3rjv_A Putative SEL1 repeat pr 98.9 2E-08 7E-13 79.5 11.6 115 2-125 32-158 (212)
184 3ma5_A Tetratricopeptide repea 98.9 1.1E-08 3.7E-13 71.9 8.9 70 51-126 2-71 (100)
185 3bee_A Putative YFRE protein; 98.8 1.8E-08 6E-13 71.5 9.3 72 18-89 2-76 (93)
186 3n71_A Histone lysine methyltr 98.8 6.5E-09 2.2E-13 94.2 7.7 122 1-125 322-464 (490)
187 3q7a_A Farnesyltransferase alp 98.8 3.9E-08 1.3E-12 85.8 11.5 120 1-126 101-238 (349)
188 3dss_A Geranylgeranyl transfer 98.8 6.2E-08 2.1E-12 83.9 12.3 117 4-126 90-223 (331)
189 4f3v_A ESX-1 secretion system 98.8 2.3E-09 7.7E-14 91.1 2.5 93 28-125 108-200 (282)
190 3u64_A Protein TP_0956; tetrat 98.7 3.6E-08 1.2E-12 84.3 6.8 87 3-89 178-273 (301)
191 3ly7_A Transcriptional activat 98.6 1.6E-07 5.5E-12 82.5 10.8 76 13-89 268-343 (372)
192 3e4b_A ALGK; tetratricopeptide 98.6 3.9E-07 1.3E-11 80.4 13.1 110 2-126 231-352 (452)
193 1klx_A Cysteine rich protein B 98.6 6.5E-07 2.2E-11 66.7 11.8 110 3-126 10-127 (138)
194 2xm6_A Protein corresponding t 98.6 7.7E-07 2.6E-11 78.3 13.4 113 2-126 310-433 (490)
195 3n71_A Histone lysine methyltr 98.5 4.2E-07 1.4E-11 82.3 11.2 114 32-149 319-445 (490)
196 3e4b_A ALGK; tetratricopeptide 98.5 1.1E-06 3.8E-11 77.5 13.7 111 3-123 194-314 (452)
197 2xm6_A Protein corresponding t 98.5 3.6E-06 1.2E-10 74.0 15.0 80 2-85 57-144 (490)
198 3qww_A SET and MYND domain-con 98.5 2.2E-07 7.6E-12 82.9 7.1 87 37-126 313-412 (433)
199 3qww_A SET and MYND domain-con 98.4 7.9E-07 2.7E-11 79.3 8.9 88 1-88 311-414 (433)
200 3qwp_A SET and MYND domain-con 98.4 1E-06 3.6E-11 78.2 9.6 92 32-126 297-401 (429)
201 4b4t_Q 26S proteasome regulato 98.4 5.3E-06 1.8E-10 70.5 12.9 146 2-151 18-187 (434)
202 3u64_A Protein TP_0956; tetrat 98.4 4.3E-06 1.5E-10 71.4 11.9 105 17-126 147-270 (301)
203 3mv2_B Coatomer subunit epsilo 98.3 2.9E-06 9.8E-11 72.9 10.5 117 2-125 114-240 (310)
204 3bee_A Putative YFRE protein; 98.3 5.8E-06 2E-10 58.3 9.4 69 52-126 2-73 (93)
205 3qwp_A SET and MYND domain-con 98.3 1.9E-06 6.4E-11 76.6 7.7 88 1-88 300-403 (429)
206 1xi4_A Clathrin heavy chain; a 98.2 1.4E-05 4.8E-10 80.4 13.3 110 2-122 1090-1221(1630)
207 1pc2_A Mitochondria fission pr 98.1 1.2E-05 4E-10 62.4 8.1 83 6-88 16-103 (152)
208 1klx_A Cysteine rich protein B 98.1 4.1E-05 1.4E-09 56.7 10.8 79 3-85 40-126 (138)
209 2v5f_A Prolyl 4-hydroxylase su 98.0 1.2E-05 4.1E-10 57.0 6.8 65 1-65 18-89 (104)
210 1pc2_A Mitochondria fission pr 98.0 3.7E-05 1.2E-09 59.6 9.7 85 37-126 13-101 (152)
211 1xi4_A Clathrin heavy chain; a 97.9 0.00011 3.9E-09 73.9 13.8 106 1-125 1118-1250(1630)
212 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00011 3.8E-09 51.9 9.1 69 22-90 5-80 (104)
213 4b4t_Q 26S proteasome regulato 97.8 0.00016 5.5E-09 61.2 11.7 124 2-126 109-246 (434)
214 3mv2_B Coatomer subunit epsilo 97.8 0.00015 5.1E-09 62.1 11.4 113 7-125 85-207 (310)
215 1b89_A Protein (clathrin heavy 97.8 6.7E-06 2.3E-10 73.9 2.6 104 1-125 74-177 (449)
216 4e6h_A MRNA 3'-END-processing 97.6 0.001 3.5E-08 62.4 14.6 74 10-83 331-405 (679)
217 4e6h_A MRNA 3'-END-processing 97.6 0.00076 2.6E-08 63.2 12.5 153 2-170 357-532 (679)
218 1b89_A Protein (clathrin heavy 97.5 0.00036 1.2E-08 62.6 9.5 101 2-125 136-236 (449)
219 1nzn_A CGI-135 protein, fissio 97.4 0.00085 2.9E-08 50.3 8.3 85 37-126 16-104 (126)
220 3ffl_A Anaphase-promoting comp 97.2 0.003 1E-07 49.5 9.7 98 24-122 22-148 (167)
221 2uy1_A Cleavage stimulation fa 97.0 0.0073 2.5E-07 54.0 12.0 115 5-126 196-350 (493)
222 2ff4_A Probable regulatory pro 96.8 0.011 3.7E-07 51.4 11.4 83 2-84 129-233 (388)
223 2uy1_A Cleavage stimulation fa 96.6 0.015 5E-07 52.1 10.6 113 2-122 227-380 (493)
224 4g26_A Pentatricopeptide repea 96.4 0.19 6.6E-06 44.9 17.0 119 2-127 40-171 (501)
225 4g26_A Pentatricopeptide repea 96.3 0.1 3.5E-06 46.7 14.4 120 4-129 86-208 (501)
226 1nzn_A CGI-135 protein, fissio 96.2 0.019 6.6E-07 42.8 7.7 85 5-89 18-107 (126)
227 3ffl_A Anaphase-promoting comp 96.1 0.015 5.1E-07 45.5 6.7 60 23-82 64-148 (167)
228 4h7y_A Dual specificity protei 96.0 0.018 6.1E-07 44.6 6.7 98 5-109 36-141 (161)
229 1y8m_A FIS1; mitochondria, unk 94.9 0.23 8E-06 37.8 9.6 80 41-126 25-107 (144)
230 2ff4_A Probable regulatory pro 94.5 0.36 1.2E-05 41.7 11.1 86 33-124 126-233 (388)
231 3o48_A Mitochondria fission 1 94.5 0.27 9.4E-06 36.9 8.9 79 41-126 26-108 (134)
232 4h7y_A Dual specificity protei 94.2 0.39 1.3E-05 37.1 9.4 103 17-126 8-124 (161)
233 3mkq_A Coatomer beta'-subunit; 93.3 1.2 4.2E-05 40.3 12.8 45 33-82 663-707 (814)
234 3o48_A Mitochondria fission 1 92.8 0.26 8.9E-06 37.1 6.2 70 21-90 39-112 (134)
235 1zbp_A Hypothetical protein VP 92.8 1.7 6E-05 36.3 11.9 116 2-126 11-130 (273)
236 1y8m_A FIS1; mitochondria, unk 92.5 0.22 7.4E-06 37.9 5.5 72 19-90 36-111 (144)
237 4gns_B Protein CSD3, chitin bi 92.5 0.3 1E-05 46.4 7.6 59 24-82 339-397 (754)
238 1ya0_A SMG-7 transcript varian 91.4 0.61 2.1E-05 42.0 8.1 61 24-84 154-214 (497)
239 4gns_B Protein CSD3, chitin bi 89.7 1.4 4.8E-05 41.8 9.2 112 5-122 266-397 (754)
240 1zbp_A Hypothetical protein VP 89.4 0.88 3E-05 38.1 6.8 59 31-89 6-64 (273)
241 4fhn_B Nucleoporin NUP120; pro 86.9 1.7 5.8E-05 42.7 8.0 149 14-166 834-1011(1139)
242 3spa_A Mtrpol, DNA-directed RN 86.2 14 0.00046 36.7 13.8 102 23-128 128-233 (1134)
243 3mkq_A Coatomer beta'-subunit; 83.4 3.7 0.00013 37.1 8.1 73 2-79 666-746 (814)
244 3txn_A 26S proteasome regulato 82.2 7.1 0.00024 34.0 9.2 99 27-126 104-211 (394)
245 1ya0_A SMG-7 transcript varian 79.0 6.6 0.00023 35.2 8.1 66 3-68 167-232 (497)
246 1qsa_A Protein (soluble lytic 76.9 12 0.00042 34.4 9.4 80 4-84 268-347 (618)
247 4gq2_M Nucleoporin NUP120; bet 73.0 68 0.0023 30.8 16.5 93 28-125 816-926 (950)
248 3mkq_B Coatomer subunit alpha; 69.4 31 0.0011 26.6 8.7 46 33-83 16-61 (177)
249 3mkq_B Coatomer subunit alpha; 67.0 42 0.0014 25.9 12.5 97 1-121 18-114 (177)
250 3spa_A Mtrpol, DNA-directed RN 66.9 46 0.0016 33.0 11.1 83 2-85 141-230 (1134)
251 2w2u_A Hypothetical P60 katani 64.1 8.7 0.0003 26.0 4.1 33 38-85 16-48 (83)
252 1qsa_A Protein (soluble lytic 63.9 34 0.0011 31.4 9.2 95 23-124 253-347 (618)
253 4fhn_B Nucleoporin NUP120; pro 63.1 1E+02 0.0035 30.0 12.9 93 27-126 817-929 (1139)
254 2v6y_A AAA family ATPase, P60 61.3 10 0.00036 25.5 4.1 33 38-85 8-40 (83)
255 4gq2_M Nucleoporin NUP120; bet 59.2 52 0.0018 31.6 9.9 39 11-49 829-867 (950)
256 4b4t_R RPN7, 26S proteasome re 58.8 57 0.002 28.0 9.4 102 23-125 132-237 (429)
257 2crb_A Nuclear receptor bindin 53.8 19 0.00065 25.2 4.3 28 22-49 15-42 (97)
258 4b4t_R RPN7, 26S proteasome re 53.4 25 0.00085 30.4 6.1 68 55-125 130-197 (429)
259 2cpt_A SKD1 protein, vacuolar 49.1 19 0.00065 25.9 3.9 33 38-85 15-47 (117)
260 1pzq_A Erythronolide synthase; 48.1 8.3 0.00028 23.8 1.6 24 152-176 29-53 (60)
261 1wfd_A Hypothetical protein 15 46.6 24 0.00084 24.1 4.1 33 38-85 12-44 (93)
262 3ax2_A Mitochondrial import re 44.5 30 0.001 22.9 4.0 27 28-54 23-49 (73)
263 2v6x_A Vacuolar protein sortin 44.5 28 0.00097 23.1 4.1 33 38-85 10-42 (85)
264 2crb_A Nuclear receptor bindin 44.2 34 0.0011 24.0 4.4 23 61-83 20-42 (97)
265 1wy6_A Hypothetical protein ST 43.6 1.1E+02 0.0036 23.4 8.5 54 31-84 100-153 (172)
266 3ax2_A Mitochondrial import re 42.5 32 0.0011 22.8 3.9 29 60-88 21-49 (73)
267 2p58_C Putative type III secre 42.1 93 0.0032 22.3 8.2 77 31-119 14-92 (116)
268 4a1g_A Mitotic checkpoint seri 40.9 36 0.0012 25.6 4.5 32 21-52 100-131 (152)
269 2wpv_A GET4, UPF0363 protein Y 39.9 1.6E+02 0.0056 24.5 9.2 27 20-46 132-158 (312)
270 2uwj_G Type III export protein 36.4 1.2E+02 0.004 21.7 8.7 77 31-119 13-91 (115)
271 2cfu_A SDSA1; SDS-hydrolase, l 35.7 29 0.00099 32.0 3.9 49 28-76 455-503 (658)
272 2wvi_A Mitotic checkpoint seri 34.7 51 0.0017 25.1 4.5 31 22-52 96-126 (164)
273 1om2_A Protein (mitochondrial 32.3 50 0.0017 23.0 3.7 28 61-88 25-52 (95)
274 3esl_A Checkpoint serine/threo 32.3 56 0.0019 25.8 4.5 31 22-52 115-145 (202)
275 4aez_C MAD3, mitotic spindle c 30.6 58 0.002 26.1 4.4 31 22-52 150-180 (223)
276 2ijq_A Hypothetical protein; s 30.4 1.7E+02 0.006 22.0 8.7 60 27-86 37-105 (161)
277 4a5x_A MITD1, MIT domain-conta 30.0 75 0.0026 21.3 4.3 18 68-85 28-45 (86)
278 1om2_A Protein (mitochondrial 29.9 50 0.0017 23.0 3.4 41 27-84 25-65 (95)
279 4gq4_A Menin; tumor suppressor 29.8 1.6E+02 0.0055 26.2 7.4 67 19-85 259-332 (489)
280 2ca5_A MXIH; transport protein 29.1 89 0.003 21.3 4.4 33 36-68 24-56 (85)
281 3t5x_A PCI domain-containing p 28.9 1.3E+02 0.0043 23.2 6.1 39 23-61 15-53 (203)
282 4b4t_S RPN3, 26S proteasome re 28.5 1E+02 0.0035 27.8 6.1 34 23-56 271-304 (523)
283 2v6x_A Vacuolar protein sortin 27.8 86 0.003 20.6 4.3 28 24-51 15-42 (85)
284 2w2u_A Hypothetical P60 katani 26.2 79 0.0027 21.0 3.9 26 25-50 22-47 (83)
285 2cpt_A SKD1 protein, vacuolar 26.0 85 0.0029 22.3 4.2 27 25-51 21-47 (117)
286 4b4t_S RPN3, 26S proteasome re 24.9 3.2E+02 0.011 24.6 8.7 79 9-89 216-303 (523)
287 2g0u_A Type III secretion syst 24.7 1.1E+02 0.0039 21.1 4.5 35 35-69 29-63 (92)
288 2dl1_A Spartin; SPG20, MIT, st 24.7 84 0.0029 22.6 3.9 16 37-52 18-33 (116)
289 3lpz_A GET4 (YOR164C homolog); 24.2 3.2E+02 0.011 23.0 9.2 26 20-45 134-159 (336)
290 1wfd_A Hypothetical protein 15 23.3 94 0.0032 21.0 3.9 27 25-51 18-44 (93)
291 2rpa_A Katanin P60 ATPase-cont 23.3 55 0.0019 21.8 2.6 50 101-170 18-67 (78)
292 3re2_A Predicted protein; meni 22.3 2.2E+02 0.0074 25.0 6.7 67 19-85 252-325 (472)
293 2dl1_A Spartin; SPG20, MIT, st 21.0 1.3E+02 0.0044 21.7 4.3 27 22-48 22-48 (116)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=8.4e-18 Score=129.78 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=104.5
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 10 ~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
.+++++..+|+++.++..+|.++.+.|++++|+..+++++.++|+++.++.++|.++..+|++++|+..+++++.+.|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 90 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 90 ~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+ . .+.++|.+++.+| ++++|+..|++++...
T Consensus 104 ~---~--~~~~lg~~~~~lg-~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 Y---T--PVFHTGQCQLRLK-APLKAKECFELVIQHS 134 (151)
T ss_dssp C---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred c---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 5 3 4456999999999 9999999999999984
No 2
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=5.3e-17 Score=153.39 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=131.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++|+.++|+++.++.++|.++.+.|++++|++.+++||+++|+++.++.++|.++..+|++++|+..++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhch
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~r 160 (192)
++++++|++. .+++ ++|.++..+| ++++|++.|++++... |. ....+.+-+.++ ...|......+.
T Consensus 102 kAl~l~P~~~---~a~~--~Lg~~~~~~g-~~~eAi~~~~~Al~l~--P~---~~~a~~~L~~~l---~~~g~~~~A~~~ 167 (723)
T 4gyw_A 102 RAIQINPAFA---DAHS--NLASIHKDSG-NIPEAIASYRTALKLK--PD---FPDAYCNLAHCL---QIVCDWTDYDER 167 (723)
T ss_dssp HHHHHCTTCH---HHHH--HHHHHHHHTT-CHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHH---HHTTCCTTHHHH
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---ChHHHhhhhhHH---HhcccHHHHHHH
Confidence 9999999853 4444 5999999999 9999999999999885 42 233344444444 444444334566
Q ss_pred HHHHHHHHhh
Q 029491 161 LKVLADCVAD 170 (192)
Q Consensus 161 w~~l~~~~~~ 170 (192)
++.+.....+
T Consensus 168 ~~kal~l~~~ 177 (723)
T 4gyw_A 168 MKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhChh
Confidence 6666666555
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=9.8e-17 Score=128.27 Aligned_cols=120 Identities=17% Similarity=0.098 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc-----------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD----------- 69 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~----------- 69 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++.++|.++..+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 97 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++++.|+++ . .+..+|.++...| ++++|+..|++++...
T Consensus 98 g~~~~A~~~~~~al~~~P~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYA---P--LHLQRGLVYALLG-ERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCcccH---H--HHHHHHHHHHHcC-ChHHHHHHHHHHHhcc
Confidence 999999999999999999853 3 4446999999998 8999999999999873
No 4
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=1.1e-16 Score=121.70 Aligned_cols=112 Identities=13% Similarity=-0.044 Sum_probs=105.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.+.|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++. .++++|.+++..| ++++|+..|++++...
T Consensus 88 ~~~-----~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 88 EPR-----FPFHAAECLLQXG-ELAEAESGLFLAQELI 119 (148)
T ss_dssp CTH-----HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred Cch-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 653 4456999999999 9999999999999875
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.5e-16 Score=127.15 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-----------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD 69 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~-----------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~ 69 (192)
.|++++|+..+++++..+|+++.++.++|.++... |++++|+..+++|++++|+++.++..+|.++..+
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++++. +++ . .+.++|.++...| ++++|+..|++.+...
T Consensus 132 g~~~~A~~~~~~al~~~-~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTP---E--IRSALAELYLSMG-RLDEALAQYAKALEQA 181 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHhcc-cch---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 99999999999999998 532 3 4556999999999 9999999999999874
No 6
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=5.2e-16 Score=115.84 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=102.3
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 9 ~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
..+++++..+|+++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.+.|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 89 ~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++. .++++|.+++..| ++++|+..|++.+...
T Consensus 85 ~~~-----~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 85 EPR-----FPFHAAECHLQLG-DLDGAESGFYSARALA 116 (142)
T ss_dssp CTH-----HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 653 4567999999999 9999999999999875
No 7
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=1.8e-16 Score=120.34 Aligned_cols=119 Identities=8% Similarity=-0.064 Sum_probs=109.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++++..++++++..|+++..+..+|.++.+.|+|++|++.++++|+++|+++.++..+|.++..+|++++|+..+++
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH-HHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI-YDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~-yd~~i~~~ 126 (192)
++++.|+++ . .+..+|.+++..| +++++... +++++...
T Consensus 91 al~~~p~~~---~--~~~~la~~~~~~~-~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 91 SVELNPTQK---D--LVLKIAELLCKND-VTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHCTTCH---H--HHHHHHHHHHHHC-SSSSHHHHHHHHHHHHS
T ss_pred HHHhCCCCH---H--HHHHHHHHHHHcC-ChHHHHHHHHHHHHHhC
Confidence 999999864 3 4445999999998 88887766 48888874
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=6.6e-16 Score=114.48 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=99.1
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
..|+..++|+.+..+...|..+...|+|++|+..+++||+++|+++.++.++|.++..+|++++|+..+++++.++|++.
T Consensus 2 ~ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999998853
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
. .+.++|.++..+| ++++|+..|++++...
T Consensus 82 ---~--a~~~lg~~~~~~~-~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 82 ---K--GYIRKAACLVAMR-EWSKAQRAYEDALQVD 111 (126)
T ss_dssp ---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred ---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
Confidence 3 4456999999999 9999999999999885
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=6.2e-16 Score=135.77 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=120.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~-~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
.|++++|+..+++++.++|+++.++.++|.++...|+ +++|++.+++||+++|+++.+++++|.++..+|++++|+..+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4889999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHH
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (192)
++++.++|++ .+.|.++|.++..+| ++++|+..|+++|... |. ..........++.+
T Consensus 190 ~kal~ldP~~-----~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l~--P~---~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 190 ADILNQDAKN-----YHAWQHRQWVIQEFK-LWDNELQYVDQLLKED--VR---NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHCTTC-----HHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHC--TT---CHHHHHHHHHHHHH
T ss_pred HHHHHhCccC-----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHH
Confidence 9999999984 356778999999999 9999999999999985 42 23344455555444
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.63 E-value=1.3e-15 Score=143.91 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=112.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++.++|+++.++.++|.++.+.|++++|++.+++||+++|+++.++.++|.++..+|++++|+..++
T Consensus 56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++.|+++ . .+.++|.++...| ++++|.+.|++.+...
T Consensus 136 ~Al~l~P~~~---~--a~~~L~~~l~~~g-~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 136 TALKLKPDFP---D--AYCNLAHCLQIVC-DWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHCSCCH---H--HHHHHHHHHHHTT-CCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCh---H--HHhhhhhHHHhcc-cHHHHHHHHHHHHHhC
Confidence 9999999853 3 4456999999999 9999999999988763
No 11
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=2.1e-15 Score=119.69 Aligned_cols=122 Identities=13% Similarity=0.036 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGI----------------LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~----------------laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
.|++++|+..+++++..+|+++.++.. +|.++...|++++|+..++++++++|+++.++.++|.
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 96 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 489999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh---------------------------------HHHHHHHHHhCCCC
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN---------------------------------WWHVALCYLEGHSP 111 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~---------------------------------~WhlAl~~l~~G~~ 111 (192)
++..+|++++|+..+++++.+.|+++. +++ +++.|++++..| +
T Consensus 97 ~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~-~ 172 (208)
T 3urz_A 97 MQVCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT-R 172 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc-C
Confidence 999999999999999999999998642 221 123445555566 6
Q ss_pred HHHHHHHHHHhhhhh
Q 029491 112 MRKVLEIYDNHIWKE 126 (192)
Q Consensus 112 ~deAl~~yd~~i~~~ 126 (192)
|++|+..|++++...
T Consensus 173 ~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 173 YEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888764
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=3.6e-14 Score=108.54 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=109.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...+++++++..++
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 97 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ 97 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.+. . .+..+|.++...| ++++|+..|++.+...
T Consensus 98 ~a~~~~~~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 98 RAIALNTVYA---D--AYYKLGLVYDSMG-EHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHhCccch---H--HHHHHHHHHHHhC-CchhHHHHHHHHHHhc
Confidence 9999988853 2 4456899999998 8999999999999874
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.6e-14 Score=110.54 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=113.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++++..+.+++...|+++.++..+|..+...+++++|...+.+++.++|+++.++..+|.++..+|++++|+..++
T Consensus 52 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 52 IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++ . .+.++|.++..+| ++++|+..|++++...
T Consensus 132 ~~l~~~p~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 132 KTISIKPGFI---R--AYQSIGLAYEGKG-LRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHhcchhh---h--HHHHHHHHHHHCC-CHHHHHHHHHHHHhCC
Confidence 9999999853 3 4456999999999 9999999999999874
No 14
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=3.3e-14 Score=112.51 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=113.2
Q ss_pred CCChHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p-~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
.|++++|+..+++++..+| .++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4899999999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcc--hhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFM--YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~--~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++...|+++.+. ....+.++|.++...| ++++|+..|++++...
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDVT 147 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSS
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhcC
Confidence 99999999864210 0124567999999999 9999999999999873
No 15
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.59 E-value=7.8e-15 Score=113.04 Aligned_cols=89 Identities=12% Similarity=-0.072 Sum_probs=86.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++...|+|++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCC
Q 029491 81 ECSSTWSSC 89 (192)
Q Consensus 81 ~a~~~~p~~ 89 (192)
+++.+.|+.
T Consensus 129 ~al~l~~~~ 137 (151)
T 3gyz_A 129 LVIQHSNDE 137 (151)
T ss_dssp HHHHHCCCH
T ss_pred HHHHhCCCH
Confidence 999998873
No 16
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=3e-14 Score=105.90 Aligned_cols=121 Identities=8% Similarity=0.003 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++...|.++ ..+.....+..++..| ++++|+..|++....
T Consensus 106 ~a~~~~p~~~---~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 106 TVVKVKPHDK---DAKMKYQECNKIVKQK-AFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHSTTCH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCH---HHHHHHHHHHHHHHHH-HHHHHHHcccchHHH
Confidence 9999998853 3444445666678888 999999999876554
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=1.5e-14 Score=107.04 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=87.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++...|++++|+..+++||+++|+++.++..+|.++..+|++++|+..++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCC
Q 029491 81 ECSSTWSSCS 90 (192)
Q Consensus 81 ~a~~~~p~~~ 90 (192)
++++++|+++
T Consensus 106 ~al~l~P~~~ 115 (126)
T 4gco_A 106 DALQVDPSNE 115 (126)
T ss_dssp HHHHHCTTCH
T ss_pred HHHHHCcCCH
Confidence 9999999964
No 18
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=3.5e-14 Score=108.40 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=108.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH-HHhcCCH--HHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV-LQHDCCF--KEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv-l~~~Gr~--~eai~~ 78 (192)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.+ +...|++ ++|+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999999999 7799998 999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++...|.++ . .+..+|.+++..| ++++|+..|++.+...
T Consensus 104 ~~~al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 104 IDKALALDSNEI---T--ALMLLASDAFMQA-NYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhhC
Confidence 999999998853 2 4556999999999 9999999999999874
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.2e-14 Score=127.48 Aligned_cols=121 Identities=8% Similarity=-0.001 Sum_probs=110.4
Q ss_pred CCC-hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 1 MGR-PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 1 ~G~-~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
+|+ +++|+..+++++.++|+++.++..+|.++...|++++|+..+++||+++|+++.++.++|.++..+|++++|+..+
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 476 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-----HHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-----LEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deA-----l~~yd~~i~~~ 126 (192)
+++++++|+++ ..|.++|.++..+++.+++| +..|+++|...
T Consensus 224 ~~al~l~P~~~-----~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 224 DQLLKEDVRNN-----SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHHHHCTTCH-----HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCCH-----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 99999999954 25557999998844365788 58999999874
No 20
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.56 E-value=2.2e-13 Score=110.22 Aligned_cols=123 Identities=11% Similarity=0.042 Sum_probs=111.4
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHh------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQH------ 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~------ 68 (192)
.|++++|+..+++++...|++ +.++..+|.++...|++++|+..+++++.++|++ +.++..+|.++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 489999999999999999999 8899999999999999999999999999998865 6789999999999
Q ss_pred --cCCHHHHHHHHHHhHhhccCCCCcchhhhH--------------HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 --DCCFKEAVQFMEECSSTWSSCSSFMYTHNW--------------WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 --~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~--------------WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++...|+++. ..... +.+|.+++..| ++++|+..|++.+...
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDAY 178 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHC
Confidence 99999999999999999999753 22222 67999999999 9999999999999874
No 21
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=9.8e-14 Score=98.10 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=110.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++...|..+ . .+..+|.++...| ++++|...|++.+...
T Consensus 95 ~~~~~~~~~---~--~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 95 ALELDPRSA---E--AWYNLGNAYYKQG-DYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHCTTCH---H--HHHHHHHHHHTTT-CHHHHHHHHHHHHHHS
T ss_pred HHHhCCCCh---H--HHHHHHHHHHHHc-cHHHHHHHHHHHHccC
Confidence 999988743 2 4556999999998 9999999999988763
No 22
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=5e-13 Score=99.75 Aligned_cols=119 Identities=9% Similarity=0.049 Sum_probs=111.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++++..+++++...|+++.++..+|.++...|++++|...+++++.++|+++.++..+|.++...|++++|+..+++
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++...|..+ . .+..+|.++...| ++++|+..|++.+...
T Consensus 102 ~~~~~~~~~---~--~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 102 VAEANPINF---N--VRFRLGVALDNLG-RFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCcHhH---H--HHHHHHHHHHHcC-cHHHHHHHHHHHHhcC
Confidence 999988743 2 4456999999998 9999999999999874
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=5.2e-13 Score=103.11 Aligned_cols=122 Identities=9% Similarity=0.025 Sum_probs=105.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-CCFKEAVQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~-Gr~~eai~~~ 79 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|.+.+++++.++|+++.++..+|.++... |++++|+..+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 488899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++. .|..+. ....+..+|.++...| ++++|+..|++.+...
T Consensus 101 ~~~~~-~~~~~~--~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 101 DKALA-DPTYPT--PYIANLNKGICSAKQG-QFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp HHHHT-STTCSC--HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHc-CcCCcc--hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 99998 444332 2345566888888988 8999999999988764
No 24
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-13 Score=116.60 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=95.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++.++|.++..+|++++|+..++
T Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 37778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++...|.++ . .+..+|.++...| ++++|+..|++++..
T Consensus 296 ~al~~~p~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 296 TALRLCPTHA---D--SLNNLANIKREQG-NIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHTTT-CHHHHHHHHHHHTTS
T ss_pred HHHhhCcccH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 8888877642 2 3445788877887 788888888887765
No 25
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.5e-13 Score=102.69 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 55 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 55 TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|..+ ..+..+|.++...| ++++|+..|++.+...
T Consensus 135 ~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 135 IALGLRPNEG-----KVHRAIAFSYEQMG-RHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHhcCccch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Confidence 9999988742 35556999999999 9999999999998875
No 26
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.54 E-value=6.7e-14 Score=107.69 Aligned_cols=118 Identities=14% Similarity=-0.007 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHH-hcCCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-HDCCFKEAVQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~-~~Gr~~eai~~~ 79 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++| ++.....++.+.. .+++..+++..+
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~ 97 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL 97 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence 37778888888888888888888888888888888888877776666666665 5544444443322 122233345555
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++++...|+++ .. +..+|.++...| ++++|+..|++.+..
T Consensus 98 ~~al~~~P~~~---~~--~~~la~~~~~~g-~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 98 EQELAANPDNF---EL--ACELAVQYNQVG-RDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHSTTCH---HH--HHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCH---HH--HHHHHHHHHHcc-cHHHHHHHHHHHHHh
Confidence 55555555532 22 223555555555 555555555555543
No 27
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1e-13 Score=100.34 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
|..+..+...|..+...|++++|+..+++++.++|+++.++.++|.++..+|++++|+..+++++.+.|+++ . .+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~ 75 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV---R--AY 75 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---H--HH
Confidence 456778889999999999999999999999999999999999999999999999999999999999998853 3 45
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+|.++..+| ++++|+..|++.+...
T Consensus 76 ~~lg~~~~~~~-~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVK-EYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHhC
Confidence 56999999999 9999999999998874
No 28
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=6e-14 Score=111.00 Aligned_cols=120 Identities=7% Similarity=0.026 Sum_probs=110.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-------HHHHHHHHHHHhcCCHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK 73 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-------~A~h~lahvl~~~Gr~~ 73 (192)
+|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++ .++..+|.++..+|+++
T Consensus 55 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 55 IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 58999999999999999999999999999999999999999999999999999999 77999999999999999
Q ss_pred HHHHHHHHhHhhccC--CCCcchhhhHHHHHHHHHhCCCCH---------------------------HHHHHHHHHhhh
Q 029491 74 EAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPM---------------------------RKVLEIYDNHIW 124 (192)
Q Consensus 74 eai~~~~~a~~~~p~--~~~~~~~h~~WhlAl~~l~~G~~~---------------------------deAl~~yd~~i~ 124 (192)
+|+..++++++..|+ .+ ..+.++|.+++..| +. ++|+..|++++.
T Consensus 135 ~A~~~~~~al~~~p~~~~~-----~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 135 KAEENYKHATDVTSKKWKT-----DALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHTTSSCHHHHH-----HHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccH-----HHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999887 43 24456999998888 77 899999999998
Q ss_pred hh
Q 029491 125 KE 126 (192)
Q Consensus 125 ~~ 126 (192)
..
T Consensus 209 l~ 210 (228)
T 4i17_A 209 LS 210 (228)
T ss_dssp HC
T ss_pred cC
Confidence 74
No 29
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=8.9e-14 Score=102.70 Aligned_cols=106 Identities=9% Similarity=0.068 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc--chhhh
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHN 97 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~--~~~h~ 97 (192)
+.+.++..+|.++...|+|++|+..+++||+++|+++.++.++|.++..+|++++|+..+++++.+.|..+.. ..+..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999999999886431 11234
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 98 ~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+..+|.++...| ++++|+..|++++...
T Consensus 86 ~~~lg~~~~~~~-~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 86 MSRAGNAFQKQN-DLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 556999999999 9999999999999863
No 30
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.53 E-value=1.4e-14 Score=134.99 Aligned_cols=119 Identities=12% Similarity=-0.049 Sum_probs=112.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++..+|+++.++.++|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++ +..|+
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++++|++. . .+.++|.+++.+| ++++|++.|++++...
T Consensus 525 ~al~~~P~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 525 TVWSTNDGVI---S--AAFGLARARSAEG-DRVGAVRTLDEVPPTS 564 (681)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHTSCTTS
T ss_pred HHHHhCCchH---H--HHHHHHHHHHHcC-CHHHHHHHHHhhcccC
Confidence 9999999853 3 4456999999999 9999999999999774
No 31
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=2.4e-13 Score=115.17 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=101.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++.++|.++..+|++++|+..++
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47888888889998888888888888888888889999999999999999999988888999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++..|+.+ . .+..+|.++...| ++++|+..|++++...
T Consensus 262 ~al~~~p~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 262 RAIELQPHFP---D--AYCNLANALKEKG-SVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHTCSSCH---H--HHHHHHHHHHHHS-CHHHHHHHHHHHHHHC
T ss_pred HHHhhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 9888888753 2 3445888888888 8899999988888763
No 32
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.53 E-value=2.9e-14 Score=104.64 Aligned_cols=96 Identities=10% Similarity=-0.075 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl 103 (192)
.+..+|..+.+.|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++.+.|+++ . .+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~--~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---A--VHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H--HHHHHHH
Confidence 3567788899999999999999999999999999999999999999999999999999999999853 3 4456999
Q ss_pred HHHhCCCCHHHHHHHHHHhhhh
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...| ++++|+..|++.+..
T Consensus 94 ~~~~~g-~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEH-NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHH-HHHHHHHHHHHHHC-
T ss_pred HHHHcC-CHHHHHHHHHHHHHh
Confidence 999998 899999999998764
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=4.9e-14 Score=118.31 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
.|++++|+..+++++...|+ ++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46789999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++...|+.+ . .+.++|.++...| ++++|+..|++++...
T Consensus 270 ~~~al~~~p~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 270 YTRALEIQPGFI---R--SRYNLGISCINLG-AYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHCTTCH---H--HHHHHHHHHHHHT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCch---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 999999998853 2 4556999999999 9999999999999875
No 34
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=1.7e-13 Score=123.54 Aligned_cols=118 Identities=13% Similarity=0.042 Sum_probs=60.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...|++. . .+..+|.++...| ++++|++.|++++..
T Consensus 83 al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 83 ASDAAPEHP---G--IALWLGHALEDAG-QAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 666655532 2 2233666666665 566666666666555
No 35
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=3.7e-13 Score=104.74 Aligned_cols=122 Identities=13% Similarity=0.068 Sum_probs=108.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++ . .++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 19 ~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 95 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95 (213)
T ss_dssp TTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence 489999999999997 3 3788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCc-----------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSF-----------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~-----------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++.. -....+.++|.++...| ++++|+..|++++...
T Consensus 96 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcC
Confidence 999988875400 01235567999999999 9999999999999874
No 36
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.52 E-value=8e-14 Score=105.69 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=88.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus 34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCC
Q 029491 81 ECSSTWSSCSS 91 (192)
Q Consensus 81 ~a~~~~p~~~~ 91 (192)
+++.+.|+++.
T Consensus 114 ~al~~~p~~~~ 124 (148)
T 2vgx_A 114 LAQELIANXPE 124 (148)
T ss_dssp HHHHHHTTCGG
T ss_pred HHHHHCcCCCc
Confidence 99999998653
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.51 E-value=7.1e-14 Score=105.89 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH-HH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ-FM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~-~~ 79 (192)
+|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..+|+.++++. ++
T Consensus 44 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999988776 56
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G 109 (192)
++++++.|+++. ... -.+..+...|
T Consensus 124 ~~al~l~P~~~~---~~~--l~~~ll~~~G 148 (150)
T 4ga2_A 124 ERAAKLFPGSPA---VYK--LKEQLLDCEG 148 (150)
T ss_dssp HHHHHHSTTCHH---HHH--HHHHHHHTCC
T ss_pred HHHHHhCcCCHH---HHH--HHHHHHHHhC
Confidence 999999999642 222 2555555555
No 38
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.51 E-value=9.6e-14 Score=103.43 Aligned_cols=90 Identities=11% Similarity=-0.019 Sum_probs=87.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++|+.++|+++.++..+|.++..+|++++|+..++
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCC
Q 029491 81 ECSSTWSSCS 90 (192)
Q Consensus 81 ~a~~~~p~~~ 90 (192)
+++.+.|+++
T Consensus 111 ~al~~~p~~~ 120 (142)
T 2xcb_A 111 SARALAAAQP 120 (142)
T ss_dssp HHHHHHHTCG
T ss_pred HHHHhCCCCc
Confidence 9999999865
No 39
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=2.7e-13 Score=102.77 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
+.++..+..+|..+...|+|++|+..+++++.++|+++.++.++|.++..+|++++|+..+++++.+.|.+. . .+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~--~~ 82 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS---K--AW 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---H--HH
Confidence 334455555555555555555555555555555555555555555555555555555555555555554431 1 23
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
..+|.++..+| ++++|+..|++.+..
T Consensus 83 ~~lg~~~~~~g-~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMA-DYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 33555555555 555555555555443
No 40
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=4.2e-13 Score=112.56 Aligned_cols=124 Identities=7% Similarity=0.069 Sum_probs=105.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++
T Consensus 79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcc-----------------------------------------hhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491 82 CSSTWSSCSSFM-----------------------------------------YTHNWWHVALCYLEGHSPMRKVLEIYD 120 (192)
Q Consensus 82 a~~~~p~~~~~~-----------------------------------------~~h~~WhlAl~~l~~G~~~deAl~~yd 120 (192)
++...|..+... ....+..+|.++...| ++++|+..|+
T Consensus 159 al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 237 (365)
T 4eqf_A 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFN 237 (365)
T ss_dssp HHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 998877632210 1223445777777777 7888888887
Q ss_pred Hhhhhh
Q 029491 121 NHIWKE 126 (192)
Q Consensus 121 ~~i~~~ 126 (192)
+.+...
T Consensus 238 ~al~~~ 243 (365)
T 4eqf_A 238 AALTVR 243 (365)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 777663
No 41
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=8.3e-13 Score=100.03 Aligned_cols=91 Identities=15% Similarity=0.034 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCC
Q 029491 81 ECSSTWSSCSS 91 (192)
Q Consensus 81 ~a~~~~p~~~~ 91 (192)
+++.+.|+++.
T Consensus 104 ~al~~~p~~~~ 114 (164)
T 3sz7_A 104 KGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHSSSCC
T ss_pred HHHHhCCCchH
Confidence 99999999753
No 42
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=1.5e-12 Score=108.36 Aligned_cols=125 Identities=9% Similarity=0.048 Sum_probs=111.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcc----------------------------------------------hhhhHHHHHHHHHhCCCCHHH
Q 029491 81 ECSSTWSSCSSFM----------------------------------------------YTHNWWHVALCYLEGHSPMRK 114 (192)
Q Consensus 81 ~a~~~~p~~~~~~----------------------------------------------~~h~~WhlAl~~l~~G~~~de 114 (192)
+++...|..+... ....+..+|.++...| ++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~ 235 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK 235 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHH
Confidence 9998887754321 1234456888889998 8999
Q ss_pred HHHHHHHhhhhh
Q 029491 115 VLEIYDNHIWKE 126 (192)
Q Consensus 115 Al~~yd~~i~~~ 126 (192)
|+..|++.+...
T Consensus 236 A~~~~~~al~~~ 247 (368)
T 1fch_A 236 AVDCFTAALSVR 247 (368)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 43
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=3.1e-13 Score=121.78 Aligned_cols=120 Identities=8% Similarity=-0.072 Sum_probs=112.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++...|++++|++.++++++++|+++.++.++|.++..+|++++|+..++
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhC---CCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~---G~~~deAl~~yd~~i~~~ 126 (192)
++++..|+++ . .+.++|.++... | ++++|.+.|++.+...
T Consensus 116 ~al~~~p~~~---~--~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 116 RAHQLLPEEP---Y--ITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCH---H--HHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcC
Confidence 9999998853 2 445699999999 8 9999999999999885
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1.5e-12 Score=103.31 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 36777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhHh--hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSS--TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~--~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++. ..|. ....+..+|.+++..| ++++|+..|++.+...
T Consensus 130 ~~~~~~~~~~-----~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 130 EASQDTLYPE-----RSRVFENLGLVSLQMK-KPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHTTCTTCTT-----HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHhCccCcc-----cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Confidence 8877 3333 2234445777777777 7888888888877663
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=9e-13 Score=103.38 Aligned_cols=118 Identities=9% Similarity=0.058 Sum_probs=71.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus 71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 71 NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...|.++ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 151 ~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 151 AVELNENDT-----EARFQFGMCLANEG-MLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHHT-CCHHHHHHHHHHHHH
T ss_pred HHHhCCccH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 666655532 13334566666665 566666666665554
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.4e-13 Score=106.27 Aligned_cols=116 Identities=12% Similarity=0.009 Sum_probs=102.0
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+++..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++++++
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33334444444488999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 85 ~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..|+++ . .+..+|.++...| ++++|+..|++++...
T Consensus 202 ~~~~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 202 KDPNFV---R--AYIRKATAQIAVK-EYASALETLDAARTKD 237 (258)
T ss_dssp HCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred hCHHHH---H--HHHHHHHHHHHHh-hHHHHHHHHHHHHHhC
Confidence 998853 2 4556999999999 9999999999998874
No 47
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.3e-12 Score=106.47 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=101.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|++++++..+++++..+|+++.++..+|.++...| ++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 78888888888888888888888889999988998 89999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|... . .+..+|.++...| ++++|+..|++.+...
T Consensus 150 ~a~~~~~~~~---~--~~~~l~~~~~~~~-~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 150 TAAQLMKGCH---L--PMLYIGLEYGLTN-NSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHTTTCS---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred HHHHhccccH---H--HHHHHHHHHHHHh-hHHHHHHHHHHHHHhC
Confidence 9998888753 2 3344888888888 8999999998888764
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2.2e-13 Score=108.88 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=94.1
Q ss_pred CChHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 2 G~~~~al~~~~ral~~----~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
|++++|+..+++++.. .|.++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 5677888888888876 345677888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+++++...|.++ . .+..+|.++...| ++++|+..|++.+...
T Consensus 99 ~~~~al~~~~~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 99 AFDSVLELDPTYN---Y--AHLNRGIALYYGG-RDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHCTTCT---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcccc---H--HHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence 8888888877753 2 3445888888887 7888888888887763
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=2.8e-13 Score=120.77 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=103.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc--
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-- 69 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~-- 69 (192)
+|++++|+..+++++..+|+ +.++..+|.++... |++++|++.+++|++++|+++.++..+|.++..+
T Consensus 150 ~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 37888899999999998888 68888899998888 9999999999999999999999999999999988
Q ss_pred ------CCHHHHHHHHHHhHhhcc---CCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 ------CCFKEAVQFMEECSSTWS---SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 ------Gr~~eai~~~~~a~~~~p---~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++++.| .++ ..+.++|.++...| ++++|+..|++++...
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNP-----DLHLNRATLHKYEE-SYGEALEGFSQAAALD 288 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 999999999999999988 532 24556999999998 8999999999998874
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=7.4e-13 Score=103.88 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=107.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++ . .+..+|.+++..| ++++|+..|++.+...
T Consensus 116 ~~~~~~~~~~---~--~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 116 KALRAGMENG---D--LFYMLGTVLVKLE-QPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHTCCSH---H--HHHHHHHHHHHTS-CHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCH---H--HHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence 9999998753 2 4556999999999 9999999999999874
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.4e-13 Score=122.67 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=111.2
Q ss_pred CCCh-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc---------C
Q 029491 1 MGRP-DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD---------C 70 (192)
Q Consensus 1 ~G~~-~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~---------G 70 (192)
.|++ ++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+ +.++..+|.++..+ |
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence 4788 99999999999999999999999999999999999999999999999999 79999999999999 9
Q ss_pred CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC--------CCCHHHHHHHHHHhhhhh
Q 029491 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~--------G~~~deAl~~yd~~i~~~ 126 (192)
++++|+..+++++++.|+++ . .+..+|.+++.. | ++++|+..|++++...
T Consensus 194 ~~~~A~~~~~~al~~~p~~~---~--~~~~lg~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVLDG---R--SWYILGNAYLSLYFNTGQNPK-ISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHhC
Confidence 99999999999999999853 2 455699999888 8 8999999999999874
No 52
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.49 E-value=6e-13 Score=110.83 Aligned_cols=119 Identities=10% Similarity=0.040 Sum_probs=111.1
Q ss_pred CChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
|++++|+..+++++..+|+ ++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6788999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++...|..+ . .+..+|.++...| ++++|+..|++++...
T Consensus 275 ~~al~~~~~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 275 RRALELQPGYI---R--SRYNLGISCINLG-AHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHCTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 99999988753 3 4456999999999 9999999999999875
No 53
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=2.7e-13 Score=126.24 Aligned_cols=119 Identities=10% Similarity=-0.029 Sum_probs=110.8
Q ss_pred CCChHHHHHHHHhhc--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491 1 MGRPDLCFDIIHQVL--------PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (192)
Q Consensus 1 ~G~~~~al~~~~ral--------~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~ 72 (192)
.|++++|+..+++++ ..+|+++.++..+|.++.+.|++++|++.++++++++|+++.++.++|.++..+|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 488999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++|+..+++++++.|+++ . .+.++|.++..+| ++++ ++.|++++...
T Consensus 484 ~~A~~~~~~al~l~P~~~---~--~~~~lg~~~~~~g-~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGEL---A--PKLALAATAELAG-NTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHHHHHHHHHSTTCS---H--HHHHHHHHHHHHT-CCCT-TCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCh---H--HHHHHHHHHHHcC-ChHH-HHHHHHHHHhC
Confidence 999999999999999964 3 3446999999999 9999 99999999874
No 54
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.48 E-value=2.1e-13 Score=100.06 Aligned_cols=89 Identities=10% Similarity=-0.019 Sum_probs=82.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCC
Q 029491 81 ECSSTWSSC 89 (192)
Q Consensus 81 ~a~~~~p~~ 89 (192)
++++..|..
T Consensus 110 ~al~~~P~~ 118 (121)
T 1hxi_A 110 AWLLSQPQY 118 (121)
T ss_dssp HHHC-----
T ss_pred HHHHhCcCC
Confidence 999998874
No 55
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.48 E-value=5.4e-14 Score=101.50 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=83.5
Q ss_pred CCChHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~---~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
+|++++|+..+++++.. +|+++.++.++|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCC
Q 029491 78 FMEECSSTWSSCS 90 (192)
Q Consensus 78 ~~~~a~~~~p~~~ 90 (192)
.+++++...|+++
T Consensus 83 ~~~~al~~~p~~~ 95 (117)
T 3k9i_A 83 LLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHCCCH
T ss_pred HHHHHHHhCCCcH
Confidence 9999999999864
No 56
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=3.1e-13 Score=93.57 Aligned_cols=104 Identities=9% Similarity=-0.028 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC--CCCcch
Q 029491 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS--CSSFMY 94 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~--~~~~~~ 94 (192)
.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++...|. ..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---- 76 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK---- 76 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----
Confidence 368889999999999999999999999999999999999999999999999999999999999999999988 42
Q ss_pred hhhHHHHHHHHHhC-CCCHHHHHHHHHHhhhhh
Q 029491 95 THNWWHVALCYLEG-HSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 95 ~h~~WhlAl~~l~~-G~~~deAl~~yd~~i~~~ 126 (192)
..+..+|.++... | ++++|++.+++.+...
T Consensus 77 -~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 -DVWAAKADALRYIEG-KEVEAEIAEARAKLEH 107 (112)
T ss_dssp -HHHHHHHHHHTTCSS-CSHHHHHHHHHHGGGC
T ss_pred -HHHHHHHHHHHHHhC-CHHHHHHHHHHHhhcc
Confidence 3556799999999 9 9999999999999874
No 57
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=3.9e-13 Score=112.00 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|++.......+..+..+|+.++|++.++
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 47888999999999999999999999999999999999999999999999999888888888888888888888999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|+++ . .+..+|..++..| ++++|++.|++.+...
T Consensus 210 ~al~~~P~~~---~--~~~~la~~l~~~g-~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 210 QQVAENPEDA---A--LATQLALQLHQVG-RNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHhcCCccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhcc
Confidence 9999998853 3 3445999999998 9999999999999974
No 58
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=7.8e-13 Score=95.95 Aligned_cols=104 Identities=7% Similarity=-0.073 Sum_probs=95.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h 96 (192)
..|.++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.+.|.++ .
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~-- 78 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---K-- 78 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH---H--
Confidence 46788999999999999999999999999999999999999999999999999999999999999999998853 2
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+..+|.++...| ++++|+..|++++...
T Consensus 79 ~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEME-SYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHHC
Confidence 4556999999999 9999999999999875
No 59
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.48 E-value=1.1e-13 Score=108.68 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=86.0
Q ss_pred CCChHHHHHHHHhhcCCCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------cCCCHHHH--
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ-------ED-----FIFGILAFSLLELGQMSDAEEAAKKGLKI-------NKHDCWSQ-- 59 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~-------~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL-------~P~da~A~-- 59 (192)
.|++++|+..+++|+.++|+ +. .++.++|.++...|+|++|+..+++||++ +|+++.++
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 38999999999999999999 43 39999999999999999999999999999 99999999
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491 60 --HALCHVLQHDCCFKEAVQFMEECSSTWSSCSS 91 (192)
Q Consensus 60 --h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~ 91 (192)
.++|.++..+||++||+..|++++.+.|.+..
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999999999765
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=3.6e-13 Score=95.28 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhh
Q 029491 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (192)
Q Consensus 18 ~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~ 97 (192)
+|.++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|.++ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~ 82 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS-----KA 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH-----HH
Confidence 3445555566666666666666666666666666666666666666666666666666666666666655531 13
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 98 WWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 98 ~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
+..+|.++...| ++++|+..|++.+.
T Consensus 83 ~~~~~~~~~~~~-~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 83 YGRMGLALSSLN-KHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 334566666665 56666666666554
No 61
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=1e-12 Score=106.98 Aligned_cols=119 Identities=12% Similarity=0.126 Sum_probs=111.6
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++..|..+ ..++.+|.+++..| ++++|+..|++.+...
T Consensus 232 a~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 232 ALDINPGYV-----RVMYNMAVSYSNMS-QYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCH-----HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence 999988743 25567999999999 9999999999999875
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=2.3e-12 Score=102.22 Aligned_cols=120 Identities=11% Similarity=-0.011 Sum_probs=110.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++. .+|.++.++..+|.++..+|++++|+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++++...|..+ ..+..+|.++...| ++++|+..|++.+...
T Consensus 164 ~~~~~~~~~~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 164 FEKSLRLNRNQP-----SVALEMADLLYKER-EYVPARQYYDLFAQGG 205 (252)
T ss_dssp HHHHHHHCSCCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCcccH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 999999988743 24556999999998 9999999999988763
No 63
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.46 E-value=4.3e-13 Score=114.59 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=108.1
Q ss_pred CCChHHHHHHHHhhcCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv 65 (192)
.|++++|+..+++++...|++ ..++.++|.++...|++++|+..+++||+++|+++.++..+|.+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 389999999999999999998 69999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHH-HHHHHHhhhh
Q 029491 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 125 (192)
Q Consensus 66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deA-l~~yd~~i~~ 125 (192)
+..+|++++|+..+++++.+.|++. . .+..++.++...| +++++ ...|.+.+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~l~P~~~---~--a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQLYPNNK---A--AKTQLAVCQQRIR-RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCH---H--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCH---H--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999853 3 4446999999998 89998 5577776654
No 64
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=1.2e-12 Score=102.71 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------D-----CWSQHALCHVLQHDCCFKEAVQFMEECSST--- 85 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-------d-----a~A~h~lahvl~~~Gr~~eai~~~~~a~~~--- 85 (192)
.++.+...|..+...|+|++|++.+++||+++|+ + ++++.++|.++..+||++||+..+++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4577888999999999999999999999999999 4 449999999999999999999999999999
Q ss_pred ----ccCCCCcchhhhH----HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 86 ----WSSCSSFMYTHNW----WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 86 ----~p~~~~~~~~h~~----WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|+.. ..| .+.|.++..+| ++++|+..|++++...
T Consensus 90 ~~e~~pd~~-----~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQDEG-----KLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTSTHH-----HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cccCCCchH-----HHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 98742 344 57999999999 9999999999999885
No 65
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=7.8e-13 Score=94.41 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h 96 (192)
..|..+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|.++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~ 85 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-----K 85 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH-----H
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch-----H
Confidence 45667788888888888888888888888888888888888888888888888888888888888888877642 2
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+..+|.++...| ++++|+..|++.+..
T Consensus 86 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMK-DYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 4455888888887 788888888887664
No 66
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5e-13 Score=96.64 Aligned_cols=87 Identities=7% Similarity=-0.010 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcc
Q 029491 81 ECSSTWS 87 (192)
Q Consensus 81 ~a~~~~p 87 (192)
+++.+.|
T Consensus 97 ~al~~~p 103 (126)
T 3upv_A 97 AARTKDA 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHhCc
Confidence 9999993
No 67
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.1e-12 Score=106.86 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=62.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHhcCCH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN---------KHDCWSQHALCHVLQHDCCF 72 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~---------P~da~A~h~lahvl~~~Gr~ 72 (192)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.+. |.++.++..+|.++..+|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 455555555555555555555555555555555555555555555555554 44455555555555555555
Q ss_pred HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++|+..+++++...|..+ . .+..+|.++...| ++++|+..|++.+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNA---S--TYSAIGYIHSLMG-NFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHSTTCS---H--HHHHHHHHHHHHT-CHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhCccch---H--HHHHHHHHHHHhc-cHHHHHHHHHHHHcc
Confidence 555555555555554432 1 2233555555555 555555555555544
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=9.3e-13 Score=101.66 Aligned_cols=120 Identities=8% Similarity=-0.010 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-GQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~-g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
.|++++|+..+++++...|+++.++..+|.++... |++++|+..+++++. .+|+++.++..+|.++..+|++++|+.
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 48999999999999999999999999999999999 999999999999999 778889999999999999999999999
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+++++...|..+ ..+..+|.++...| ++++|+..|++.+...
T Consensus 135 ~~~~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 135 YLKRSLAAQPQFP-----PAFKELARTKMLAG-QLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHSTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCc-----hHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 9999999988743 25556999999998 9999999999998874
No 69
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.2e-12 Score=103.10 Aligned_cols=120 Identities=12% Similarity=0.093 Sum_probs=110.6
Q ss_pred CCChHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----------------------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE-------DFIFGILAFSLLELGQMSDAEEAAKKGLK----------------------- 50 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~-------~~~~~~laf~L~e~g~~~eAe~~~rrALa----------------------- 50 (192)
+|++++|+..+++++...|++ +.++..+|.++...|++++|+..+++++.
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 589999999999999998876 79999999999999999999999999999
Q ss_pred ---ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 51 ---INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 51 ---L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++|+++.++..+|.++..+|++++|+..+++++...|.++ . .+..+|.+++..| ++++|+..|++.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~--~~~~l~~~~~~~~-~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---R--GYSNRAAALAKLM-SFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---H--HHHHHHHHHHHhC-CHHHHHHHHHHHHHhC
Confidence 7888999999999999999999999999999999998853 2 4556999999999 9999999999999874
No 70
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.45 E-value=4.7e-12 Score=103.88 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=109.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcc---CCCCcchhhh----------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWS---SCSSFMYTHN----------WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p---~~~~~~~~h~----------~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...| ..+. ... .+.+|..+...| ++++|+..|++.+...
T Consensus 96 ~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 96 KVLKSNPSEQEEKE---AESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHTSCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcccChHH---HHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence 9999988 5332 111 123378888888 8999999999988764
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=1.2e-12 Score=104.45 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=106.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|+++ ....+ .++. +..| ++++|+..|++.+...
T Consensus 136 ~a~~~~~~~~---~~~~~--~~~~-~~~~-~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 136 AFYQDDPNDP---FRSLW--LYLA-EQKL-DEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHCTTCH---HHHHH--HHHH-HHHH-CHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCCh---HHHHH--HHHH-HHhc-CHHHHHHHHHHHHhcC
Confidence 9999998853 22222 4444 4557 8999999998888763
No 72
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.44 E-value=4.6e-13 Score=111.55 Aligned_cols=121 Identities=9% Similarity=0.020 Sum_probs=109.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+..+.....+..+.+.++.++|++.++++++++|+++.++.++|.++..+|++++|++.++
T Consensus 164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 48999999999999999998888888888889999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++++..|+... ...+-+++.++...| +.++|...|++.+..
T Consensus 244 ~~l~~~p~~~~---~~a~~~l~~~~~~~g-~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 244 GHLRXDLTAAD---GQTRXTFQEILAALG-TGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHCTTGGG---GHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhccccccc---chHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Confidence 99999998532 234445899988898 899999999998864
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.1e-12 Score=105.06 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=56.2
Q ss_pred CChHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~----~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
|++++|+..+++++. .|++ +.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+.
T Consensus 51 ~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 51 AKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554 2222 22244555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhHhhccCCCCcchhhhHHHHH-HHHHhCCCCHHHHHHHHHHhhhh
Q 029491 78 FMEECSSTWSSCSSFMYTHNWWHVA-LCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 78 ~~~~a~~~~p~~~~~~~~h~~WhlA-l~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+++++...|..+ ..+.++| .++ ..+ ++++|+..|++.+..
T Consensus 130 ~~~~al~~~~~~~-----~~~~~l~~~~~-~~~-~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 130 YMEKQIRPTTTDP-----KVFYELGQAYY-YNK-EYVKADSSFVKVLEL 171 (272)
T ss_dssp HHGGGCCSSCCCH-----HHHHHHHHHHH-HTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcH-----HHHHHHHHHHH-HHH-HHHHHHHHHHHHHHh
Confidence 5555555544421 1223345 332 223 455555555555544
No 74
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.44 E-value=2.4e-13 Score=121.95 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++.+.|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHH--HHhCCCCHHHHHHHHH
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIYD 120 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~--~l~~G~~~deAl~~yd 120 (192)
+++++.|+++. .+. .++.+ ++..| ++++|++.|+
T Consensus 99 ~al~~~p~~~~---~~~--~l~~~~~~~~~g-~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKVKPHDKD---AKM--KYQECNKIVKQK-AFERAIAGDE 134 (477)
T ss_dssp HHHHHSTTCTT---HHH--HHHHHHHHHHHH-HHCCC-----
T ss_pred HHHHhCCCCHH---HHH--HHHHHHHHHHHH-HHHHHhcccc
Confidence 99999998653 333 36666 78888 9999999999
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=1.6e-12 Score=105.10 Aligned_cols=123 Identities=10% Similarity=-0.006 Sum_probs=110.1
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHhcccCCCHHHH----------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLE--------LGQMSDAEEAAKKGLKINKHDCWSQ---------- 59 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e--------~g~~~eAe~~~rrALaL~P~da~A~---------- 59 (192)
+|++++|+..+++++..+|++ +.++..+|.++.. .|++++|+..+++++.++|+++.+.
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 589999999999999988854 6789999999999 9999999999999999999998888
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC----------CCCHHHHHHHHHHh
Q 029491 60 -------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG----------HSPMRKVLEIYDNH 122 (192)
Q Consensus 60 -------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~----------G~~~deAl~~yd~~ 122 (192)
..+|.++..+|++++|+..+++++...|+++. ....+..+|.++..+ | ++++|+..|++.
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~ 221 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW--ADDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT--HHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHH
Confidence 77899999999999999999999999998653 344566799988876 7 899999999999
Q ss_pred hhhh
Q 029491 123 IWKE 126 (192)
Q Consensus 123 i~~~ 126 (192)
+...
T Consensus 222 ~~~~ 225 (261)
T 3qky_A 222 LQIF 225 (261)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 9874
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.43 E-value=8.6e-13 Score=107.43 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=112.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCc-------chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSF-------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~-------~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|..... .....+..+|.++...| ++++|...|++.+...
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN-RPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT-CHHHHHHHTTCCSHHH
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhc
Confidence 999999883110 01235557999999999 9999999999887763
No 77
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=1.2e-11 Score=101.48 Aligned_cols=88 Identities=9% Similarity=0.036 Sum_probs=55.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHhhccCC
Q 029491 82 CSSTWSSC 89 (192)
Q Consensus 82 a~~~~p~~ 89 (192)
++...|+.
T Consensus 214 a~~~~~~~ 221 (359)
T 3ieg_A 214 CLKLDQDH 221 (359)
T ss_dssp HHHHCTTC
T ss_pred HHhhCccc
Confidence 66665553
No 78
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.42 E-value=2.9e-13 Score=115.61 Aligned_cols=117 Identities=9% Similarity=-0.092 Sum_probs=104.6
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---------------HHHHHHHHHHHHh
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQH 68 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---------------a~A~h~lahvl~~ 68 (192)
+.+++..+++++...|+++.++..+|..+...|+|++|+..+++|+.++|++ +.++.++|.++..
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677788899999999999999999999999999999999999 6999999999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++.+.|++. . .+..+|.+++.+| ++++|+..|++++...
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNNE---K--GLSRRGEAHLAVN-DFELARADFQKVLQLY 260 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCcH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
Confidence 9999999999999999999853 3 4456999999999 9999999999999884
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1e-11 Score=103.62 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 4 PDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 4 ~~~al~~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
.++|+..++|++. .+|+++.++..+|..+...|++++|++.++++++++|+++. ++.+++.++..+|++++|+..+++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3899999999999 79999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHh---CCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~---~G~~~deAl~~yd~~i~~~ 126 (192)
++...|... +.+ ++...++ .| ++++|..+|++++...
T Consensus 160 a~~~~p~~~-----~~~--~~~a~~~~~~~~-~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 160 AREDARTRH-----HVY--VTAALMEYYCSK-DKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHTSTTCCT-----HHH--HHHHHHHHHTSC-CHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCH-----HHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 998877632 233 3333343 57 7888888888888764
No 80
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=8.6e-12 Score=88.92 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=94.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G 109 (192)
+++...|.+. . .+..++.++...|
T Consensus 109 ~~~~~~p~~~---~--~~~~l~~~~~~~~ 132 (133)
T 2lni_A 109 KALDLDSSCK---E--AADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCGGGT---H--HHHHHHHHHHHHT
T ss_pred HHHHhCCCch---H--HHHHHHHHHHHhc
Confidence 9999998854 2 3334777776655
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.41 E-value=3.1e-12 Score=89.61 Aligned_cols=102 Identities=13% Similarity=0.211 Sum_probs=83.3
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhh
Q 029491 18 NQQE-DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (192)
Q Consensus 18 ~p~~-~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h 96 (192)
+|.. +..+..+|..+...|++++|++.+++++.++|+++.++..+|.++...|++++|+..+++++...|.++ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~-- 78 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---E-- 78 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---H--
Confidence 4555 677888888888999999999999999999999999999999999999999999999999988877742 2
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+..+|.++...| ++++|+..|++.+..
T Consensus 79 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 79 AWYNLGNAYYKQG-DYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 4446888888888 899999999887764
No 82
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.40 E-value=6.5e-12 Score=107.52 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=109.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++.+|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCC---Ccchhh--------hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCS---SFMYTH--------NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~---~~~~~h--------~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|..+ .. ... ..+.+|..+...| ++++|+..|++.+...
T Consensus 119 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 119 KVLKSNPSENEEKEA-QSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHTSCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 9999988743 10 100 1345677888888 8999999999988763
No 83
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.40 E-value=3.7e-12 Score=111.26 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++. .+..+|.++...| ++++|+..|++++...
T Consensus 369 ~~~~~~~~~~~-----~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 369 ETKLKFPTLPE-----VPTFFAEILTDRG-DFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHCTTCTH-----HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHcC
Confidence 99999988642 3445899999999 9999999999998875
No 84
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=1.2e-12 Score=96.64 Aligned_cols=88 Identities=9% Similarity=0.091 Sum_probs=83.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-------HHHHHHHHHHHhcCCHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK 73 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-------~A~h~lahvl~~~Gr~~ 73 (192)
.|++++|+..+.+++.++|+++.++.++|.++.+.|+|++|++.+++||+++|++. .++..+|.++..+|+++
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 48999999999999999999999999999999999999999999999999999874 58899999999999999
Q ss_pred HHHHHHHHhHhhccC
Q 029491 74 EAVQFMEECSSTWSS 88 (192)
Q Consensus 74 eai~~~~~a~~~~p~ 88 (192)
+|+..+++++...|+
T Consensus 101 ~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 101 LAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999998776
No 85
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=7.9e-12 Score=99.98 Aligned_cols=119 Identities=8% Similarity=0.060 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH----HHHHHHHHHHhcCCHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW----SQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~----A~h~lahvl~~~Gr~~eai 76 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++. .|.++. ++..+|.++..+|++++|+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 48999999999999999999999999999999999999999999999999 555544 4899999999999999999
Q ss_pred HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+++++...|..+. .+..+|.++...| ++++|+..|++.+...
T Consensus 95 ~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~-~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 95 QQYQAAVDRDTTRLD-----MYGQIGSYFYNKG-NFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHSTTCTH-----HHHHHHHHHHHTT-CHHHHHHHHGGGCCSS
T ss_pred HHHHHHHhcCcccHH-----HHHHHHHHHHHcc-CHHHHHHHHHHHhhcC
Confidence 999999999998642 4456999999999 9999999999999873
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.39 E-value=2.2e-12 Score=93.56 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=86.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCC
Q 029491 81 ECSSTWSSC 89 (192)
Q Consensus 81 ~a~~~~p~~ 89 (192)
+++...|+.
T Consensus 102 ~a~~~~p~~ 110 (137)
T 3q49_B 102 RAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHChhH
Confidence 999999884
No 87
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=4.7e-12 Score=106.07 Aligned_cols=119 Identities=8% Similarity=-0.078 Sum_probs=66.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf--~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~ 78 (192)
+|+.++|...+++++..+|++.......++ .+...|++++|+..++++++.+|+++.++.++|.++..+|++++|+..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356666666666666666665433332222 122335666666666666666666666666666666666666666666
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHH-HHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK-VLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~de-Al~~yd~~i~~ 125 (192)
+++++...|+++ . .+.+++.++...| ++++ +.+.+++.+..
T Consensus 223 l~~al~~~p~~~---~--~l~~l~~~~~~~g-~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKDSGHP---E--TLINLVVLSQHLG-KPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHCTTCH---H--HHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCH---H--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 666666666542 1 2334666666665 4543 34555555544
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.39 E-value=3.2e-12 Score=106.25 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~-g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~ 67 (192)
+|++++|+..+++++.+.|.. +.++..+|.++... |++++|++.+++|+++.|++ +.++.++|.++.
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 489999999999999987643 46888999999996 99999999999999999876 567899999999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+|++++|+..+++++.+.|+.+.. .....+..+|++++.+| ++++|+..|++.+...
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSED 229 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC-
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 9999999999999999998886431 00113446899999998 8999999999998764
No 89
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.39 E-value=1.3e-11 Score=87.01 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~ 112 (192)
+++...|.++ . .+..++.++...| ++
T Consensus 105 ~~~~~~p~~~---~--~~~~l~~~~~~~~-~~ 130 (131)
T 2vyi_A 105 KALELDPDNE---T--YKSNLKIAELKLR-EA 130 (131)
T ss_dssp HHHHHSTTCH---H--HHHHHHHHHHHHT-TC
T ss_pred HHHhcCccch---H--HHHHHHHHHHHHh-cC
Confidence 9999998753 2 4446888888877 54
No 90
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=3.2e-13 Score=105.95 Aligned_cols=88 Identities=15% Similarity=0.033 Sum_probs=83.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHALCHVLQHDC- 70 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~----------~eAe~~~rrALaL~P~da~A~h~lahvl~~~G- 70 (192)
+++++|+..+++++..+|+++.++.++|.+|.+.|++ ++|+..+++||+++|+++.++.++|.++..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999876 59999999999999999999999999999985
Q ss_pred ----------CHHHHHHHHHHhHhhccCC
Q 029491 71 ----------CFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 71 ----------r~~eai~~~~~a~~~~p~~ 89 (192)
++++|+..|++|+.++|++
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999985
No 91
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.38 E-value=2e-11 Score=102.17 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=91.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH--HHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV--LQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv--l~~~Gr~~eai~~ 78 (192)
.|++++|+..+++ |+++.++..+|.++...|++++|++.++++++++|++.......+++ +...|++++|+..
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3677777777776 67777777777777777777777777788777777776555444433 3334777888888
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHH
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (192)
+++++...|+++ . .++.+|.+++..| ++++|.+.|++++... |. .+..+.+-+.+++.
T Consensus 189 ~~~~l~~~p~~~---~--~~~~la~~~~~~g-~~~eA~~~l~~al~~~--p~---~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 189 FQEMADKCSPTL---L--LLNGQAACHMAQG-RWEAAEGVLQEALDKD--SG---HPETLINLVVLSQH 246 (291)
T ss_dssp HHHHHHHSCCCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHH
Confidence 888777777642 2 4556999999998 9999999999999874 42 23444444444433
No 92
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.37 E-value=4.3e-11 Score=83.70 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=94.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+..++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G 109 (192)
+++...|..+ . ....++.++...|
T Consensus 102 ~~~~~~~~~~---~--~~~~l~~~~~~~g 125 (125)
T 1na0_A 102 KALELDPNNA---E--AKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHCTTCH---H--HHHHHHHHHHHHC
T ss_pred HHHHhCCCcH---H--HHHHHHHHHHhcc
Confidence 9999998853 2 3345777665543
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=9.2e-12 Score=99.36 Aligned_cols=125 Identities=9% Similarity=-0.050 Sum_probs=107.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---HHHHHHHHHHh------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQH------ 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---A~h~lahvl~~------ 68 (192)
.|++++|+..+++++...|+++ .++..+|.++...|++++|++.+++++.++|+++. ++..+|.++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3899999999999999888775 68899999999999999999999999999999986 78899998876
Q ss_pred ------------cCCHHHHHHHHHHhHhhccCCCCcchh------------hhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 69 ------------DCCFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 69 ------------~Gr~~eai~~~~~a~~~~p~~~~~~~~------------h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
+|++++|+..+++++...|+++..... .....+|.+++..| ++++|+..|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNRVEGMLR 175 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHH
Confidence 689999999999999999997531000 01145888899998 99999999999998
Q ss_pred hh
Q 029491 125 KE 126 (192)
Q Consensus 125 ~~ 126 (192)
..
T Consensus 176 ~~ 177 (225)
T 2yhc_A 176 DY 177 (225)
T ss_dssp HS
T ss_pred HC
Confidence 74
No 94
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.37 E-value=1.8e-12 Score=98.01 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHhhcCC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY------------------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL 62 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~------------------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l 62 (192)
.|++.+|+..+.+++.. +|.++.++.++|.++...|++++|+..+++||.++|+++.++..+
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 48999999999999998 777789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 63 CHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 63 ahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
|.++..+|++++|+..+++++.+.|+++
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999998853
No 95
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.37 E-value=1.5e-11 Score=105.33 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=63.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHH------------HHHHHhc
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL------------CHVLQHD 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~l------------ahvl~~~ 69 (192)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++..+..+ |.++..+
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555555555555554444 5555555
Q ss_pred CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|++++|+..+++++...|.++.+ ....+..+|.++...| ++++|+..|++++..
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEY-TVRSKERICHCFSKDE-KPVEAIRVCSEVLQM 324 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHH-HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 55555555555555555543210 1122333555555555 555555555555543
No 96
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.37 E-value=2.4e-11 Score=107.80 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=95.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|+..+++++...|+++.++..++.++...|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHhhccC---CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSS---CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~---~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++...|+ .|. -....+..++.++...| ++++|+..|++.+...
T Consensus 501 ~~~~~~~~~~~p~-~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 501 ALLLVKKTQSNEK-PWAATWANLGHAYRKLK-MYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHSCCCSG-GGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHhhhccccchh-hHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC
Confidence 8877543 221 01334556788888887 7888888888877763
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.37 E-value=8.5e-12 Score=98.73 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhHh
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------------LCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~----------------lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+..+...|..+...|++++|+..++++++++|+++.++.. +|.++..+|++++|+..+++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999 99999999999999999999999
Q ss_pred hccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 85 ~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+.|+++ . .+..+|.+++..| ++++|+..|++.+...
T Consensus 83 ~~p~~~---~--~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 83 KAPNNV---D--CLEACAEMQVCRG-QEKDALRMYEKILQLE 118 (208)
T ss_dssp HCTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred HCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Confidence 999863 3 4445999999999 9999999999999985
No 98
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=9.3e-12 Score=103.81 Aligned_cols=119 Identities=5% Similarity=-0.090 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~-~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~-~Gr~~eai~~ 78 (192)
.|+.++|+..+++++...|+++. ++..+|..+...|++++|++.+++|++++|.++.++...+..... +|++++|+..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48899999999999999999986 899999999999999999999999999999998888776666443 7999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++++...|+++ ..|-.++.++...| ++++|..+|++++..
T Consensus 192 ~~~al~~~p~~~-----~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 192 FELGLKKYGDIP-----EYVLAYIDYLSHLN-EDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHHHHTTC-CHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCcH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 999999999853 25556888888898 999999999999984
No 99
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=2.6e-12 Score=106.80 Aligned_cols=123 Identities=10% Similarity=-0.010 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++.++|.++...|++++|+..+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhh--------------------------HHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHN--------------------------WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~--------------------------~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++.+.|+++..+.... .-+++.+ ..| ++++|++.|++++...
T Consensus 97 ~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~-~~~~A~~~~~~al~~~ 165 (281)
T 2c2l_A 97 RAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAA-ERERELEECQRNHEGH 165 (281)
T ss_dssp HHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHH-HHHHHHTTTSGGGTTT
T ss_pred HHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHH-HHHHHHHHHHhhhccc
Confidence 99999997642111001 1122222 346 7899999998888764
No 100
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.36 E-value=1.4e-11 Score=87.12 Aligned_cols=107 Identities=7% Similarity=0.069 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcc--hhh
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM--YTH 96 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~--~~h 96 (192)
|+.+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|..+... ...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999999999988753210 044
Q ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 97 ~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+..+|.++...| ++++|...|++.+...
T Consensus 81 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 81 AYARIGNSYFKEE-KYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence 6677999999998 9999999999999873
No 101
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=4.1e-12 Score=98.98 Aligned_cols=116 Identities=16% Similarity=-0.015 Sum_probs=98.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
.|++.+|+..+.+++...|.++ .++.++|.++...|++++|+..+++++.++|+++.++..+|.
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4899999999999999999887 899999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH-HHHHHh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDNH 122 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl-~~yd~~ 122 (192)
++..+|++++|+..+++++.+.|.++ . .+..++.++...| +++++. ..|.+.
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~~~l~~~~~~~~-~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASLNPNNL---D--IRNSYELCVNKLK-EARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCH---H--HHHHHHHHHHHHH-HHHC---------
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcH---H--HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999853 2 3345888887777 777776 444443
No 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=6.6e-12 Score=86.70 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=86.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhc-CCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHD-CCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~-Gr~~eai~ 77 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+ ++.++..+|.++..+ |++++|+.
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999 999999999999999 99999999
Q ss_pred HHHHhHhhccCCC
Q 029491 78 FMEECSSTWSSCS 90 (192)
Q Consensus 78 ~~~~a~~~~p~~~ 90 (192)
.+++++...|..+
T Consensus 99 ~~~~~~~~~p~~~ 111 (112)
T 2kck_A 99 AEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHGGGCCCCC
T ss_pred HHHHHhhcccCCC
Confidence 9999999998753
No 103
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.7e-12 Score=90.41 Aligned_cols=106 Identities=7% Similarity=-0.087 Sum_probs=96.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC
Q 029491 15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS 91 (192)
Q Consensus 15 l~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~ 91 (192)
....|.++..+..+|..+...|++++|+..+++++.++|++ +.++..+|.++..+|++++|+..+++++...|.++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~- 99 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV- 99 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-
Confidence 44567889999999999999999999999999999999998 99999999999999999999999999999988752
Q ss_pred cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 92 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 92 ~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
. .++.+|.++...| ++++|+..|++.+...
T Consensus 100 --~--~~~~~a~~~~~~~-~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 --K--ALYRRSQALEKLG-RLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred --H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Confidence 2 4556999999998 9999999999999874
No 104
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=1.1e-11 Score=86.05 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|..+ ..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-----HHHHHH
Confidence 345556666666677777777777777777777777777777777777777777777777766666532 133446
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 102 ALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 102 Al~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|.++...| ++++|...|++.+..
T Consensus 79 a~~~~~~~-~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLN-RFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHc
Confidence 66666666 677777776666543
No 105
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=4.4e-12 Score=100.69 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah 64 (192)
+|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+ +|..+.++..+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 48999999999999987 5777899999999999999999999999999999 8889999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccC---------------------------------------------CCCcchhhhHH
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW 99 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~---------------------------------------------~~~~~~~h~~W 99 (192)
++..+|++++|+..+++++...+. ..+ -....+.
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 256 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP-TVNTTLR 256 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH-HHHHHHH
Confidence 999999999999999999987432 111 1233566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 100 HVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 100 hlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+|.++...| ++++|...|++++..
T Consensus 257 ~la~~~~~~g-~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 257 SLGALYRRQG-KLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 7999999999 999999999998864
No 106
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=2e-11 Score=84.76 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=86.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|...+++++..+|+++.++..+|.++...|++++|...+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCC
Q 029491 81 ECSSTWSSCS 90 (192)
Q Consensus 81 ~a~~~~p~~~ 90 (192)
+++...|.++
T Consensus 97 ~~~~~~~~~~ 106 (118)
T 1elw_A 97 EGLKHEANNP 106 (118)
T ss_dssp HHHTTCTTCH
T ss_pred HHHHcCCCCH
Confidence 9999988853
No 107
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.34 E-value=4.9e-11 Score=85.44 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh 100 (192)
.+..+|..+...|++++|+..+++++..+|+++ .++..+|.++..+|++++|+..+++++...|+++. .......
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK--AAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT--HHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc--cHHHHHH
Confidence 456788999999999999999999999999999 79999999999999999999999999999998642 2335567
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|.++...| ++++|+..|++.+...
T Consensus 82 la~~~~~~g-~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEG-KNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 999999999 9999999999999874
No 108
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=6.1e-12 Score=104.51 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p------~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
.|++++|+..+++++...+ ..+.++..+|.++...|++++|+..+++|+.+.|.. +.++.++|.++..
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999998743 236789999999999999999999999999999875 6789999999999
Q ss_pred c-CCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 D-CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~-Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+ |++++|+..+++++.+.|..+.. .....+-++|.++..+| +|++|+..|++.+...
T Consensus 130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSS 188 (292)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 6 99999999999999999875321 01223456999999999 9999999999999874
No 109
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.33 E-value=4.2e-11 Score=106.31 Aligned_cols=118 Identities=8% Similarity=0.073 Sum_probs=80.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++++..+++++...|+++.++..+|.++..+|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55556666666666666666777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++...|.+. . .+..++.++...| ++++|+..|++.+..
T Consensus 433 ~~~~~~~~~---~--~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 433 AARLFQGTH---L--PYLFLGMQHMQLG-NILLANEYLQSSYAL 470 (597)
T ss_dssp HHHTTTTCS---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHhCccch---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 777666532 2 2334666666666 677777777776654
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.33 E-value=9.3e-12 Score=95.37 Aligned_cols=125 Identities=9% Similarity=-0.087 Sum_probs=101.4
Q ss_pred CCChHHHHHHHHhhcC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---cC----CCHHHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLP------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI---NK----HDCWSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL---~P----~da~A~h~lahvl~ 67 (192)
.|++++|+..+++++. ..|..+.++.++|.++...|++++|++.+++++++ .| ..+.++.++|.++.
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 4888999999999988 45566788999999999999999999999999998 44 34577899999999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+|++++|+..++++++..+..+.. ........+|.++...| ++++|...+++++...
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK-NLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 9999999999999999776553321 12233457899999998 8999999999988774
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.33 E-value=1.4e-11 Score=98.33 Aligned_cols=122 Identities=7% Similarity=-0.009 Sum_probs=106.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHhcccCCCHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLE------------------LGQMSDAEEAAKKGLKINKHDCWSQ 59 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~---~~~~laf~L~e------------------~g~~~eAe~~~rrALaL~P~da~A~ 59 (192)
+|++++|+..+++++..+|+++. ++.++|.++.+ .|++++|+..+++++...|+++.+.
T Consensus 54 ~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 54 NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 58999999999999999998864 78888988876 5799999999999999999999876
Q ss_pred -----------------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491 60 -----------------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 60 -----------------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~ 122 (192)
..+|.++..+|++++|+..+++++...|+++. .......+|.++..+| ++++|+..+++.
T Consensus 134 ~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~l~~~~~~~g-~~~~A~~~~~~l 210 (225)
T 2yhc_A 134 DATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA--TRDALPLMENAYRQMQ-MNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH--HHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc--cHHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence 57889999999999999999999999999642 2335556999999999 999999999877
Q ss_pred hhh
Q 029491 123 IWK 125 (192)
Q Consensus 123 i~~ 125 (192)
+..
T Consensus 211 ~~~ 213 (225)
T 2yhc_A 211 AAN 213 (225)
T ss_dssp HHC
T ss_pred Hhh
Confidence 665
No 112
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.33 E-value=8.3e-12 Score=110.99 Aligned_cols=119 Identities=16% Similarity=0.103 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHhhcCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---------------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv 65 (192)
.|++.+|+..+.+++..+|.+ ..++.++|.++...|+|++|+..+++||.++|+++.++..+|.+
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 360 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 489999999999999999998 69999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH-HHHHhhhh
Q 029491 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE-IYDNHIWK 125 (192)
Q Consensus 66 l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~-~yd~~i~~ 125 (192)
+..+|++++|+..+++++.+.|++.. .+..++.++..+| +++++.+ .|.+.+..
T Consensus 361 ~~~~g~~~~A~~~~~~al~l~P~~~~-----a~~~l~~~~~~~~-~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLEVNPQNKA-----ARLQISMCQKKAK-EHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC----C-----HHHHHHHHHHHHH-HHHHHHHHHHHHC---
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 99999999999999999999998653 4556999998888 8888764 55555443
No 113
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.32 E-value=2.6e-11 Score=105.89 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=111.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+ +.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 47899999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++ . .+..+|.++...| ++++|+..|++.+...
T Consensus 335 ~a~~~~~~~~---~--~~~~la~~~~~~g-~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 335 KAQSLNPENV---Y--PYIQLACLLYKQG-KFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHCTTCS---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 9999998864 2 4556999999999 9999999999999874
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=1.7e-11 Score=101.78 Aligned_cols=102 Identities=7% Similarity=-0.077 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
|.++..+..+|..+...|++++|+..+++|++++|+++.++.++|.++..+|++++|+..+++++.+.|++. . .+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~ 75 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---K--AH 75 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---H--HH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---H--HH
Confidence 677889999999999999999999999999999999999999999999999999999999999999998853 3 34
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
..+|.++..+| ++++|+..|++++...
T Consensus 76 ~~lg~~~~~~g-~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 76 FFLGQCQLEME-SYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 45999999999 9999999999998774
No 115
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-11 Score=88.11 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=86.5
Q ss_pred CCChHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
.|++.+|+..+++++..+|++ +.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+.
T Consensus 41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120 (148)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 489999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCC
Q 029491 78 FMEECSSTWSSCS 90 (192)
Q Consensus 78 ~~~~a~~~~p~~~ 90 (192)
.+++++...|+++
T Consensus 121 ~~~~al~~~p~~~ 133 (148)
T 2dba_A 121 DLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHCSSCH
T ss_pred HHHHHHHcCCCcH
Confidence 9999999998853
No 116
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.32 E-value=1.3e-11 Score=87.99 Aligned_cols=86 Identities=15% Similarity=0.003 Sum_probs=81.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+++..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 029491 85 TWSSCS 90 (192)
Q Consensus 85 ~~p~~~ 90 (192)
+.|...
T Consensus 82 ~~~~~~ 87 (115)
T 2kat_A 82 AAQSRG 87 (115)
T ss_dssp HHHHHT
T ss_pred hccccc
Confidence 988743
No 117
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=7.7e-12 Score=99.25 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah 64 (192)
+|++++|+..+++++.. .|..+.++..+|.++...|++++|++.+++++.+ +|..+.++.++|.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 58999999999999976 4677889999999999999999999999999999 6888999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++..+|++++|+..+++++... ++.+. ....+..+|.++...| ++++|+..|++.+..
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--VAKTKNNLASCYLKQG-KYQDAETLYKEILTR 198 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999999872 11111 2345557999999999 999999999999975
No 118
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.1e-11 Score=107.13 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=111.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|.++ . .+..+|.++...| ++++|+..|++.+...
T Consensus 363 ~~~~~~~~~~---~--~~~~la~~~~~~~-~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 363 EAKRKFPEAP---E--VPNFFAEILTDKN-DFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHSTTCS---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCH---H--HHHHHHHHHHHCC-CHHHHHHHHHHHHHhh
Confidence 9999998854 2 4456999999999 9999999999998875
No 119
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.31 E-value=2e-11 Score=87.52 Aligned_cols=90 Identities=12% Similarity=-0.008 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~e 74 (192)
.|++++|+..+++++..+|+++ .++..+|.++...|++++|+..+++++.++|++ +.++..+|.++..+|++++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 4899999999999999999998 799999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHhHhhccCCC
Q 029491 75 AVQFMEECSSTWSSCS 90 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~ 90 (192)
|+..+++++...|+++
T Consensus 95 A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 95 AQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHHCCCCh
Confidence 9999999999998853
No 120
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.31 E-value=4.1e-11 Score=103.61 Aligned_cols=125 Identities=8% Similarity=-0.025 Sum_probs=113.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccCCCCcc-hhhhHHHHHHHHHh---CCCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFM-YTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~-~~h~~WhlAl~~l~---~G~~~deAl~~yd~~i~~~ 126 (192)
+++...|..+... ....+..+|.+++. .| ++++|+..|++.+...
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHC
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhC
Confidence 9999999865310 01245569999999 98 9999999999999874
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=4.8e-11 Score=88.32 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHH
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Wh 100 (192)
.+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..+++++...|..+ . .+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~--~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---K--GYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H--HHHH
Confidence 3577889999999999999999999999999999999999999999999999999999999999998753 2 4556
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|.++...| ++++|+..|++.+...
T Consensus 87 ~a~~~~~~~-~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 87 RAASNMALG-KFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence 999999999 9999999999999874
No 122
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.29 E-value=9.7e-12 Score=96.84 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----------------~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
..+..+..+|..+...|+|++|+..+++++.+.|+++ .++.++|.++..+|++++|+..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999998 999999999999999999999999999
Q ss_pred hhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 84 ~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
...|.+. . .+..+|.++..+| ++++|+..|++++...
T Consensus 116 ~~~p~~~---~--~~~~lg~~~~~~~-~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 116 KIDKNNV---K--ALYKLGVANMYFG-FLEEAKENLYKAASLN 152 (198)
T ss_dssp HHSTTCH---H--HHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred HhCcccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHHHC
Confidence 9998753 3 4456999999999 9999999999999874
No 123
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.28 E-value=2.7e-11 Score=91.39 Aligned_cols=100 Identities=9% Similarity=-0.022 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------------cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------NKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL------------------~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
.+..+...|..+...|+|++|+..+++|+.+ +|.++.++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567788999999999999999999999999 8888899999999999999999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+.+.|.+. . .+..+|.++..+| ++++|+..|++++...
T Consensus 90 l~~~p~~~---~--a~~~~g~~~~~~g-~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREETNE---K--ALFRRAKARIAAW-KLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HhcCCcch---H--HHHHHHHHHHHHh-cHHHHHHHHHHHHhcC
Confidence 99998853 3 4456999999999 9999999999999884
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.28 E-value=2.9e-12 Score=113.97 Aligned_cols=116 Identities=8% Similarity=-0.076 Sum_probs=103.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---------------HHHHHHHHHHHHhc
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQHD 69 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---------------a~A~h~lahvl~~~ 69 (192)
.+++..+++++...|+.+..+..+|..+...|+|++|+..+++|++++|++ +.++.++|.++..+
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666678889999999999999999999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++.+.|++. . .+.++|.+++.+| ++++|+..|++++...
T Consensus 331 g~~~~A~~~~~~al~~~p~~~---~--a~~~~g~a~~~~g-~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANE---K--GLYRRGEAQLLMN-EFESAKGDFEKVLEVN 381 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhcCCccH---H--HHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence 999999999999999999853 3 4456999999999 9999999999999874
No 125
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.28 E-value=4.3e-12 Score=91.37 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=76.0
Q ss_pred HcCCHHHHHHHHHHHhcc---cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC
Q 029491 34 ELGQMSDAEEAAKKGLKI---NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 110 (192)
Q Consensus 34 e~g~~~eAe~~~rrALaL---~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~ 110 (192)
..|++++|+..+++|+++ +|+++.++..+|.++..+|++++|+..++++++..|+++ . .+..+|.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~--~~~~l~~~~~~~g- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---A--LRVFYAMVLYNLG- 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---H--HHHHHHHHHHHcC-
Confidence 468999999999999999 699999999999999999999999999999999999863 3 4445999999999
Q ss_pred CHHHHHHHHHHhhhhh
Q 029491 111 PMRKVLEIYDNHIWKE 126 (192)
Q Consensus 111 ~~deAl~~yd~~i~~~ 126 (192)
++++|+..|++++...
T Consensus 76 ~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 76 RYEQGVELLLKIIAET 91 (117)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999885
No 126
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.28 E-value=2.2e-11 Score=88.47 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=105.6
Q ss_pred CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
.|++++++..+++++...+.. ..++..+|.++...|++++|+..+++++++.|.. +.++..+|.++..
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 488999999999999876532 2588899999999999999999999999998765 7899999999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++...+..+. .........+|.+++..| ++++|+..|++++...
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEIS 159 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHH
Confidence 99999999999999987655322 112345567999999998 9999999999998764
No 127
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.8e-12 Score=89.54 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc-chhhhHH
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWW 99 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~W 99 (192)
++..+..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..+++++.+.|+++.. ......+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999986320 0122445
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q 029491 100 HVALCYLEGHSPMRKVLEIYDN 121 (192)
Q Consensus 100 hlAl~~l~~G~~~deAl~~yd~ 121 (192)
.+|.++..+| ++++++..|++
T Consensus 83 ~~~~~~~~~~-~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVG-SVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHH-CCCCCSSSSSS
T ss_pred HHHHHHHHHH-hHhhhHhHHHH
Confidence 6777777777 77777665543
No 128
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=98.79 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~--------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah 64 (192)
+|++++|+..+++++... |....++..+|.++...|++++|++.+++++.+ +|..+.++..+|.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 589999999999999763 667889999999999999999999999999999 8889999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccC---------------------------------------------CCCcchhhhHH
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSS---------------------------------------------CSSFMYTHNWW 99 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~---------------------------------------------~~~~~~~h~~W 99 (192)
++..+|++++|+..+++++...|. ..+ .....+.
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 282 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLK 282 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHH
Confidence 999999999999999999976443 111 1234566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 100 HVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 100 hlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+|.++...| ++++|+..|++++...
T Consensus 283 ~la~~~~~~g-~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 283 NLGALYRRQG-KFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHh
Confidence 7999999999 9999999999998874
No 129
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.24 E-value=2.4e-11 Score=105.61 Aligned_cols=111 Identities=7% Similarity=-0.056 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHhhcC----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLP----------------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~----------------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lah 64 (192)
.|++++|+..+++++. .+|.++.++.++|.++...|++++|++.+++||+++|+++.++..+|.
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4889999999999998 788889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~ 117 (192)
++..+|++++|+..+++++++.|+++ . .+..++.++...| +++++.+
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~l~P~~~---~--~~~~l~~~~~~~~-~~~~a~k 362 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQEIAPEDK---A--IQAELLKVKQKIK-AQKDKEK 362 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999853 2 3345777777776 6776653
No 130
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.24 E-value=1.1e-11 Score=105.99 Aligned_cols=120 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred CCChHHHHHHHHhhcCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-----------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~la 63 (192)
.|++.+|+..+++++...|++. .++.++|.++...|+|++|+..+++||+++|+++.++.++|
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG 271 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4889999999999999999887 38999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHH-HhCCCCHHHHHHHHHHhhhhh
Q 029491 64 HVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY-LEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 64 hvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~-l~~G~~~deAl~~yd~~i~~~ 126 (192)
.++..+|++++|+..+++++.+.|+++. .+. .++.+. ...+ ..+++...|.+.+...
T Consensus 272 ~a~~~~g~~~~A~~~l~~al~l~p~~~~---a~~--~L~~l~~~~~~-~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 272 KAKAELGQMDSARDDFRKAQKYAPDDKA---IRR--ELRALAEQEKA-LYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHH--HHHHHHHHHHH-HHHHHHHHHHHhhCCC
Confidence 9999999999999999999999998653 233 355553 3445 7889999999888764
No 131
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=5.9e-11 Score=95.81 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=108.0
Q ss_pred CCChHHHHHHHHhhcC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------cCCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~--------~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--------~P~da~A~h~lah 64 (192)
.|++++|+..+++++. ..|..+.++..+|.++...|++++|+..+++++.+ +|..+.++..+|.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4899999999999998 46778899999999999999999999999999998 5778899999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++..+|++++|+..+++++... ++.+. ....+..+|.++...| ++++|+..|++.+..
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPD--VAKQLNNLALLCQNQG-KYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999999886 33222 3445567999999998 999999999999886
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.23 E-value=3.8e-10 Score=86.26 Aligned_cols=125 Identities=11% Similarity=0.007 Sum_probs=102.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------ccCCCHHHHHHHHHHHHhcCCHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK------INKHDCWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa------L~P~da~A~h~lahvl~~~Gr~~e 74 (192)
.|++.+|...++.+....+..+.++..+|.++...|++++|+..++++++ ..|..+.++.++|.++..+|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 37888998844444333337789999999999999999999999999999 677889999999999999999999
Q ss_pred HHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 75 AVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|+..++++++.....+.. .......++|.++...| ++++|+..+++.+...
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 999999999884433210 13445667999999999 9999999999998753
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=6.2e-10 Score=78.18 Aligned_cols=98 Identities=13% Similarity=0.219 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA 102 (192)
.++..+|..+...|++++|+..+++++.++|+++.++..+|.++...|++++|+..+++++...|..+ . .+..+|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~--~~~~l~ 76 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---E--AWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---H--HHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---H--HHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999988742 2 445699
Q ss_pred HHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 103 LCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 103 l~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.++...| ++++|+..+++.+...
T Consensus 77 ~~~~~~~-~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 77 NAYYKQG-DYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHTTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhC
Confidence 9999998 9999999999998874
No 134
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.21 E-value=1.4e-11 Score=96.53 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=80.6
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~----------~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
....++|++|++.+++|++++|+++.++.++|.++..+|++ ++||..+++++.++|+.. ..+|++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~-----~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-----EAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH-----HHHHHH
Confidence 45678899999999999999999999999999999999986 599999999999999953 367889
Q ss_pred HHHHHhCC----------CCHHHHHHHHHHhhhhh
Q 029491 102 ALCYLEGH----------SPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 102 Al~~l~~G----------~~~deAl~~yd~~i~~~ 126 (192)
|.+|..+| +++++|+..|++++...
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99998763 27999999999999985
No 135
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.21 E-value=7.2e-11 Score=83.25 Aligned_cols=74 Identities=11% Similarity=-0.036 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++++.|..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987643
No 136
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.6e-10 Score=99.76 Aligned_cols=119 Identities=10% Similarity=-0.007 Sum_probs=85.9
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc------------
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD------------ 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~------------ 69 (192)
|+..++...+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.+++.+|.++..+
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45567777777777777777777777777777777777777777777777777777777777765433
Q ss_pred -------CCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 -------CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 -------Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+..++|+..+++++...|.... .+..+|.++...| ++++|+..|++++...
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~lg~~~~~~~-~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFR-----VCSILASLHALAD-QYEEAEYYFQKEFSKE 364 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCC-----CHHHHHHHHHHTT-CHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhh-----hhhhHHHHHHHhc-cHHHHHHHHHHHHhcC
Confidence 3356677777777777766432 3345888888998 8999999999988764
No 137
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=1.5e-10 Score=98.44 Aligned_cols=124 Identities=9% Similarity=0.061 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHhhcCC---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC-------CCHHHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY---NQ---QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK-------HDCWSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~---~p---~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P-------~da~A~h~lahvl~ 67 (192)
.|++++|+..+++++.. .| ..+.++..+|.++...|++++|+..+++|+++.+ ..+.++.++|.++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 48899999999999886 23 3568899999999999999999999999999844 44568999999999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+|++++|+..+++++++.+..+. ........++|.++...| ++++|+..|++++..
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 999999999999999988766432 112335557999999998 899999999999884
No 138
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.19 E-value=1e-10 Score=82.58 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=84.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC-------HHHHHHHHHHHHhcCCHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHALCHVLQHDCCFK 73 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d-------a~A~h~lahvl~~~Gr~~ 73 (192)
.|++.+|+..+.+++..+|+++.++..+|.++...|++++|+..+++++.++|++ +.++..+|.++...|+++
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 4899999999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHhHhhccC
Q 029491 74 EAVQFMEECSSTWSS 88 (192)
Q Consensus 74 eai~~~~~a~~~~p~ 88 (192)
+|+..+++++...|+
T Consensus 97 ~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 97 DAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999774
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=7.5e-11 Score=98.55 Aligned_cols=123 Identities=9% Similarity=0.021 Sum_probs=103.7
Q ss_pred CCChHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
+|++++|+..+++++.+.+. .+.++..+|.++.. |++++|++.+++|+++.|.+ +.++.++|.++..
T Consensus 89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 48999999999999987432 24788899999988 99999999999999999875 6889999999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++.+.|..+.. .....+..++++++..| ++++|+..|++.+ ..
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCVRESY-SI 224 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHT-TS
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHh-CC
Confidence 999999999999999998875421 01224456888999998 9999999999999 53
No 140
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.19 E-value=1.4e-10 Score=78.09 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHH
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 99 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~W 99 (192)
.++.++..+|..+...|++++|+..++++++++|+++.++..+|.++..+|++++|+..+++++...|..+ ..+ .
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~--~ 81 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAK--Q 81 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHH--H
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH---HHH--H
Confidence 46788999999999999999999999999999999999999999999999999999999999999998853 333 3
Q ss_pred HHHHHHHhCC
Q 029491 100 HVALCYLEGH 109 (192)
Q Consensus 100 hlAl~~l~~G 109 (192)
.+|.++...|
T Consensus 82 ~l~~~~~~~g 91 (91)
T 1na3_A 82 NLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 4777665543
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.19 E-value=1e-10 Score=88.92 Aligned_cols=90 Identities=11% Similarity=0.095 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~-L~e~g~~--~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
+|++++|+..+++++..+|+++.++..+|.+ +...|++ ++|+..++++++++|+++.++..+|.++..+|++++|+.
T Consensus 57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence 4899999999999999999999999999999 7799999 999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCC
Q 029491 78 FMEECSSTWSSCS 90 (192)
Q Consensus 78 ~~~~a~~~~p~~~ 90 (192)
.+++++...|.++
T Consensus 137 ~~~~al~~~p~~~ 149 (177)
T 2e2e_A 137 LWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHTCCTTS
T ss_pred HHHHHHhhCCCCc
Confidence 9999999999864
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=1.2e-10 Score=99.17 Aligned_cols=125 Identities=10% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCChHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQ-------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p-------~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~ 67 (192)
+|++.+|+..+.+++...+ ..+.++.++|.++...|++++|+..+++|+.+.|... .+++++|.++.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5899999999999998743 3357899999999999999999999999999977654 59999999999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+|++++|+..+++++.+.+.... ........++|.+++..| ++++|...|++++...
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999985433211 013445567999999999 9999999999999874
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=1.9e-10 Score=89.15 Aligned_cols=89 Identities=8% Similarity=-0.041 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH----------------HHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da----------------~A~h~lah 64 (192)
+|++++|+..+++++..+|+++.++..+|.++...|++++|++.+++++.+.|++. .++.++|.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999888877 99999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
++..+|++++|+..+++++...|..
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999999998873
No 144
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.16 E-value=1.3e-10 Score=98.48 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=108.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhcC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~G 70 (192)
.|++++|+..+++++...|+++ .++..+|.++...|++++|+..+++++++ +|..+.++..+|.++..+|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4899999999999999999987 68899999999999999999999999999 7999999999999999999
Q ss_pred CHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCC-----------------HHHHHHHHHHhhhh
Q 029491 71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP-----------------MRKVLEIYDNHIWK 125 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~-----------------~deAl~~yd~~i~~ 125 (192)
++++|+..+++++...+.... ......+..+|.++...| + +++|+..|++++..
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999988543211 012335567999999998 9 99999999998775
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=1.3e-09 Score=89.92 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHh---cccCCCH----HHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDC----WSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrAL---aL~P~da----~A~h~lahvl~ 67 (192)
.|++++|+..+.+++...+.. ..++..+|.++...|++++|+..+++|+ ...|++. .++.++|.++.
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 378899999999998765432 5688899999999999999999999999 5566643 68899999999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHH-HHHHHHhhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWKE 126 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deA-l~~yd~~i~~~ 126 (192)
.+|++++|+..+++++.+.+.... ...+..+.++|.++..+| ++++| ...|++++...
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHH
Confidence 999999999999999987654221 123445667999999998 89999 77788887664
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.14 E-value=3.2e-10 Score=96.34 Aligned_cols=122 Identities=10% Similarity=-0.029 Sum_probs=104.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d--a~A~h~lahvl~~~Gr~~eai~~ 78 (192)
.|++++|...+++++...|++. ++.++|.++.+.|++++|+..+++++...++. ..++..+|.++..+|+++||+.+
T Consensus 115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3899999999999999999999 99999999999999999999999998864332 45899999999999999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++++.... ..|. ......+.+|+++..+| +.++|..+|++.+...
T Consensus 194 l~~a~~g~-~~P~-~~~da~~~~glaL~~lG-r~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 194 LTEANDSP-AGEA-CARAIAWYLAMARRSQG-NESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHTST-TTTT-THHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred HHHHhcCC-CCcc-ccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Confidence 99998543 2122 12345567999999999 9999999999999985
No 147
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=2.7e-10 Score=91.80 Aligned_cols=124 Identities=11% Similarity=0.139 Sum_probs=108.8
Q ss_pred CCChHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhcC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~----~~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~G 70 (192)
.|++++|+..+++++...|++ +.++..+|.++...|++++|++.+++++.+ .|..+.++..+|.++..+|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 489999999999999999998 477889999999999999999999999999 6778899999999999999
Q ss_pred CHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHHhhhh
Q 029491 71 CFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWK 125 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~--------------------~deAl~~yd~~i~~ 125 (192)
++++|+..++++++..|..+.. .....+..+|.++...| + +++|+..|++.+..
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887764321 12335567999999998 9 99999999988765
No 148
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=2.7e-10 Score=95.96 Aligned_cols=123 Identities=12% Similarity=0.020 Sum_probs=89.6
Q ss_pred CChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCHVLQ 67 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lahvl~ 67 (192)
|++++++..+++++...|.. ..++.++|.++...|++++|++.+++++++. |..+.++.++|.++.
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 67778888888877765432 2446677888888888888888888888876 345567777888888
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+|++++|+..++++++..+..........+..+|..++..| ++++|...+++.+..
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENL 203 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 888888888888888887765432111234456788888888 888888888888765
No 149
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=5.8e-10 Score=92.06 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=101.1
Q ss_pred CChHHHHHHHHhhcCCCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------ccCCCHHHHHHHHHHHHh
Q 029491 2 GRPDLCFDIIHQVLPYNQQ--E----DFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDCWSQHALCHVLQH 68 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~--~----~~~~~~laf~L~e~g~~~eAe~~~rrALa-------L~P~da~A~h~lahvl~~ 68 (192)
|++++|+..+++++...+. + ..++.++|.++.+.|++++|+..+++|+. ..|..+.++.++|.++..
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 6789999999999985432 2 34789999999999999999999999994 445556788999999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+.++++++.+.+..... ..+..+.++|.++..+|.++++|+..|++++...
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999999999887664321 1245667799999999833699999999988764
No 150
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=1.4e-09 Score=91.58 Aligned_cols=125 Identities=12% Similarity=-0.014 Sum_probs=103.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHHhc
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHD 69 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-----~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~~~ 69 (192)
.|++++++..+++++...|.+. .++.++|.++...|++++|++.+++|+++.|... +++.++|.++..+
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 4899999999999999877542 3678899999999999999999999999987653 4578999999999
Q ss_pred CCHHHHHHHHHHhHhhccCCCC---cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~---~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++...+..+. ........++|..+...| ++++|...|++.+...
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVL 165 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh
Confidence 9999999999999988754321 012234445899999999 9999999999998774
No 151
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=1.1e-10 Score=98.78 Aligned_cols=125 Identities=15% Similarity=0.103 Sum_probs=97.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
+|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|.. +.++..+|.++..
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4788888888888888766433 377888888888888888888888888888865 7788888888888
Q ss_pred cCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++...+..+. ......++.+|.++...| ++++|+..|++++...
T Consensus 316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG-GHERALKYAEQHLQLA 373 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 88888888888888877665321 012335667888888888 8888888888888773
No 152
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=3.6e-10 Score=97.56 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=101.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS---LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE 74 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~---L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e 74 (192)
+++++|+..+++++..+|+++.++..++.+ +...+++++|.+.+++|++++|+++.++..+|.++.. .|+.++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 467899999999999999999988887766 5567888999999999999999999999999987765 467889
Q ss_pred HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|+..+++++...|..+ . .+.++|.++...| ++++|+..|++++...
T Consensus 232 a~~~~~~al~~~~~~~---~--~~~~lg~~~~~~~-~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVT---D--VLRSAAKFYRRKD-EPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHHHHHHHHHCSSCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCccHH---H--HHHHHHHHHHHcC-chHHHHHHHHHHHHhC
Confidence 9999999999998853 2 3446999999999 9999999999999874
No 153
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.12 E-value=1.8e-10 Score=96.36 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=107.5
Q ss_pred CCChHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
+|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|.. +.++..+|.++..
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 3889999999999998765443 488999999999999999999999999999887 8899999999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++...+..+.. .....+..+|.++...| ++++|+..|++++...
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEIS 337 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence 999999999999999887764321 12335667999999999 9999999999998774
No 154
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.8e-11 Score=85.36 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=77.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHhcCCHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHDCCFKE 74 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~~Gr~~e 74 (192)
.|++++|+..+++++..+|+++.++.++|.++...|++++|++.++++++++|++ +.++..+|.++...|++++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4899999999999999999999999999999999999999999999999999999 9999999999999999888
Q ss_pred HHHHHHHhH
Q 029491 75 AVQFMEECS 83 (192)
Q Consensus 75 ai~~~~~a~ 83 (192)
++..+++..
T Consensus 97 a~~~~~~~~ 105 (111)
T 2l6j_A 97 PVVEVDELP 105 (111)
T ss_dssp CSSSSSSCS
T ss_pred hHhHHHHhH
Confidence 877665543
No 155
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=2.1e-09 Score=86.80 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=75.1
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~ 73 (192)
|++++|+..+++++. |+++.++..+|..+.. .|++++|+..+++|++++ ++.++..+|.++.. .|+++
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHH
Confidence 566777777777766 6666677777777777 777777777777777664 67777777777777 77777
Q ss_pred HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~ 125 (192)
+|+.++++++... + .. .+..+|.++.. .| ++++|+..|++++..
T Consensus 96 ~A~~~~~~a~~~~--~---~~--a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 96 KALQYYSKACDLK--Y---AE--GCASLGGIYHDGKVVTR-DFKKAVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHHHHHTT--C---HH--HHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC--C---cc--HHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhc
Confidence 7777777777652 1 12 23346666666 66 677777777776654
No 156
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=1.9e-10 Score=92.75 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=92.8
Q ss_pred CChHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHhc
Q 029491 2 GRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~------~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~~ 69 (192)
|++++|+..+++++...|.. +.++..+|.++...|++++|+..+++++.+.|.. +.++..+|.++..+
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 67788888888887765432 3477888888888888888888888888887776 77888888888888
Q ss_pred CCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
|++++|+..+++++...+..+. ......++.+|.++...| ++++|...|++++..
T Consensus 277 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Confidence 8888888888888877655321 012335566888888887 788888888888765
No 157
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.10 E-value=2e-09 Score=88.85 Aligned_cols=124 Identities=10% Similarity=0.036 Sum_probs=102.1
Q ss_pred CCChHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC------HHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d------a~A~h~lahvl~~ 68 (192)
.|++++|+..+.+++...|... ..+..+|..+...|++++|+..+++|+.+.+.. +.++.++|.++..
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 4789999999999998777543 334567778888999999999999999987655 6699999999999
Q ss_pred cCCHHHHHHHHHHhHhh---ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSST---WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~---~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|++++|+..+++++.. .|..+. .......++|.++...| +|++|+..|++++...
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~-~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEE-FDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS 226 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHH-HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcccc-chHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999944 443221 12246678999999999 9999999999998764
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=3.5e-10 Score=94.47 Aligned_cols=124 Identities=8% Similarity=0.032 Sum_probs=104.4
Q ss_pred CCChHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC------CHHHHHHHHHHHHh
Q 029491 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQH 68 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~------da~A~h~lahvl~~ 68 (192)
.|++++|+..+.+++...+. -+.++..+|.++...|++++|+..+++|+++.+. -+.++.++|.++..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 48899999999999987642 2568889999999999999999999999999643 25788999999999
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCc-chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~-~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++.+.|..... .......++|.++..+| +|++|+..|++++...
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMY 185 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence 99999999999999998875321 11234557999999999 9999999999999864
No 159
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.09 E-value=3.7e-10 Score=80.38 Aligned_cols=82 Identities=9% Similarity=0.051 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHH
Q 029491 39 SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI 118 (192)
Q Consensus 39 ~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~ 118 (192)
++|++.++++++++|+++.++..+|.++..+|++++|+..+++++...|... . .+..+|.++...| ++++|+..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~--~~~~la~~~~~~g-~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---V--AWKWLGKTLQGQG-DRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHHT-CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---H--HHHHHHHHHHHcC-CHHHHHHH
Confidence 3588999999999999999999999999999999999999999999998853 2 4556999999999 99999999
Q ss_pred HHHhhhhh
Q 029491 119 YDNHIWKE 126 (192)
Q Consensus 119 yd~~i~~~ 126 (192)
|++++...
T Consensus 76 ~~~al~~~ 83 (115)
T 2kat_A 76 WESGLAAA 83 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998864
No 160
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.08 E-value=4.2e-10 Score=94.12 Aligned_cols=125 Identities=11% Similarity=0.125 Sum_probs=109.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhcC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~G 70 (192)
.|++++|+..+++++...|+++ .++..+|.++...|++++|+..+++|+.+ .|..+.++..+|.++..+|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999999884 67889999999999999999999999998 6777899999999999999
Q ss_pred CHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCC--------------------HHHHHHHHHHhhhhh
Q 029491 71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWKE 126 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~--------------------~deAl~~yd~~i~~~ 126 (192)
++++|+..+++++...|..+. ......+..+|.++...| + +++|+..|++++...
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776432 012335667999999998 9 999999999988763
No 161
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=3.7e-09 Score=94.12 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=94.3
Q ss_pred HHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 6 LCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 6 ~al~~~~ral~-~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
+|+..+++++. ..|+++.++..++..+...|++++|++.++++++++|+++ .++...+.++..+|+.++|+..+++++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999999997 8999999999999999999999999999999999999996 688999988888888888888888888
Q ss_pred hhccCCCCcchhhhHHHHHHH-HHhCCCCHHHHHHHHHHhhhhh
Q 029491 84 STWSSCSSFMYTHNWWHVALC-YLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 84 ~~~p~~~~~~~~h~~WhlAl~-~l~~G~~~deAl~~yd~~i~~~ 126 (192)
...|.. .+.++..|.. +...| ++++|..+|++++...
T Consensus 384 ~~~~~~-----~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 384 EDARTR-----HHVYVTAALMEYYCSK-DKSVAFKIFELGLKKY 421 (530)
T ss_dssp TCTTCC-----THHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred hccCCc-----hHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHC
Confidence 875542 2333333333 22467 7888888888888764
No 162
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1.4e-09 Score=93.15 Aligned_cols=117 Identities=12% Similarity=-0.041 Sum_probs=108.9
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcccCCCHHHHHHHHHHH----Hhc---CCHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVL----QHD---CCFKE 74 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g--~~~eAe~~~rrALaL~P~da~A~h~lahvl----~~~---Gr~~e 74 (192)
.++|+....++|..+|++..++...+.+|...| +++++.+.+.++|.+||.+.++++..+.++ ... ++.++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 468999999999999999999999999999999 999999999999999999999999999999 776 89999
Q ss_pred HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH--HHHHHHHHhhhhh
Q 029491 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--KVLEIYDNHIWKE 126 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d--eAl~~yd~~i~~~ 126 (192)
++.++++++..+|.+ .|.|-|.+.+.-.+| .++ ++++.+++.|...
T Consensus 129 EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 129 EFDILEAMLSSDPKN-----HHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhC
Confidence 999999999999984 578888988888888 888 9999999999874
No 163
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.07 E-value=9.4e-09 Score=82.98 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=83.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~ 73 (192)
|+.++|+..+++++... ++.++..+|.++.. .+++++|+..+++|+.+ +++.++..+|.++.. .|+++
T Consensus 56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHH
Confidence 67777888888877763 67777788888877 88888888888888776 377888888888887 88888
Q ss_pred HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~ 125 (192)
+|+.+++++++..+. . ....+|.++.. .| ++++|+..|++++..
T Consensus 132 ~A~~~~~~a~~~~~~-----~--a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 132 KAVEYFTKACDLNDG-----D--GCTILGSLYDAGRGTPK-DLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHHTTCH-----H--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcH-----H--HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC
Confidence 888888888776421 2 23347777766 66 788888888777765
No 164
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=5.1e-09 Score=96.13 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=117.2
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC--C
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--C 71 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~----------~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G--r 71 (192)
.++|+..+.+++..+|++..++...+.++...|+ +++|.+.+.+++..+|++.++++..+.++...| +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4688999999999999999999999999999998 999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (192)
Q Consensus 72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (192)
+++++++++++++.+|++ .|.|-|.+.+....|..++++++.+++.|... ++ ..........+|.++
T Consensus 125 ~~~el~~~~k~l~~d~~N-----~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~---n~saW~~r~~ll~~l 191 (567)
T 1dce_A 125 WARELELCARFLEADERN-----FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS---NYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-----ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CC---CccHHHHHHHHHHhh
Confidence 799999999999999884 46777888877777646999999999999875 42 233445666666665
No 165
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=1.7e-09 Score=96.32 Aligned_cols=119 Identities=5% Similarity=-0.075 Sum_probs=105.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-QHDCCFKEAVQF 78 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl-~~~Gr~~eai~~ 78 (192)
.|+.++++..+++++...|.++ .++..++..+...|++++|++.+++|++..|.+...+...+.+. ...|+.++|+..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 4899999999999999999986 68999999999999999999999999999999888777777663 359999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++++...|+++ ..|.+++.++...| ++++|..+|++++..
T Consensus 414 ~e~al~~~p~~~-----~~~~~~~~~~~~~g-~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 414 FELGLKKYGDIP-----EYVLAYIDYLSHLN-EDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHHHTTTT-CHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCH-----HHHHHHHHHHHhCC-CHhhHHHHHHHHHhc
Confidence 999999998853 36667888888898 999999999999986
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.03 E-value=1.9e-10 Score=102.95 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~Whl 101 (192)
+..+..+|..+...|++++|++.+++|++++|+++.++.++|.++..+|++++|+..+++++++.|... . .+..+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~--~~~~l 80 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---K--GYYRR 80 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---H--HHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---H--HHHHH
Confidence 344455667778899999999999999999999999999999999999999999999999999998853 3 44569
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 102 ALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 102 Al~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|.++..+| ++++|++.|++++...
T Consensus 81 g~~~~~~g-~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 81 AASNMALG-KFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 99999999 9999999999999874
No 167
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.01 E-value=1.5e-09 Score=72.92 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G 70 (192)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999998765
No 168
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=2.6e-09 Score=73.64 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHH
Q 029491 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (192)
Q Consensus 26 ~~laf~L~e~g~~~eAe~~~rrALaL~P~da~-A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~ 104 (192)
...|..+...|++++|+..++++++++|+++. ++..+|.++..+|++++|+..+++++.+.|+++. .+.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~------ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA---LQAR------ 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH---HHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHHH------
Confidence 35678899999999999999999999999999 9999999999999999999999999999998642 2211
Q ss_pred HHhCCCCHHHHHHHHHHhhhhh
Q 029491 105 YLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 105 ~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+ .+++++..|++.+...
T Consensus 75 ----~-~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 ----K-MVMDILNFYNKDMYNQ 91 (99)
T ss_dssp ----H-HHHHHHHHHCCTTHHH
T ss_pred ----H-HHHHHHHHHHHHhccC
Confidence 5 6889999998887765
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.00 E-value=4.7e-09 Score=91.12 Aligned_cols=99 Identities=9% Similarity=-0.091 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc----------------ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLK----------------INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALa----------------L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
+..+..+|..+...|+|++|++.+++|++ ++|.++.++.++|.++..+|++++|+..+++++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999 89999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 86 WSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 86 ~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|+.. . .+..+|.++..+| ++++|+..|++++...
T Consensus 303 ~p~~~---~--a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 303 DPSNT---K--ALYRRAQGWQGLK-EYDQALADLKKAQEIA 337 (370)
T ss_dssp CTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred CchhH---H--HHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence 98853 3 4456999999999 9999999999999884
No 170
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.99 E-value=2e-09 Score=91.61 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=102.8
Q ss_pred CCChHHHHHHHHhhcCCCC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC------CCHHHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQ---Q----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p---~----~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P------~da~A~h~lahvl~ 67 (192)
+|++..|+..+.+++...+ + .+.++.++|.++...|++++|++.+++|+.+.+ ..+.+++++|.++.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5889999999999998643 2 356888999999999999999999999999854 23578999999999
Q ss_pred hcCCHHHHHHHHHHhHhhccC--CCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~--~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+|++++|+..+++++.+... ++. ......++|.++...| ++++|+..|++++...
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDL--LPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChh--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999984331 111 2345567999999999 9999999999999874
No 171
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=6.1e-09 Score=89.05 Aligned_cols=118 Identities=9% Similarity=-0.005 Sum_probs=108.1
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH--
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSL----LEL---GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK-- 73 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L----~e~---g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~-- 73 (192)
+..+++..+.+++..+|.+..++...+.++ ... ++++++.+.+.++|.++|.+.++++..+.++...|+.+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 889999999999999999999999999999 666 89999999999999999999999999999999999998
Q ss_pred HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC------HHHHHHHHHHhhhhh
Q 029491 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP------MRKVLEIYDNHIWKE 126 (192)
Q Consensus 74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~------~deAl~~yd~~i~~~ 126 (192)
+.++++++++..+|.+ .|.|-|.+......| + +++++..+++.|...
T Consensus 164 ~EL~~~~~~i~~d~~N-----~sAW~~R~~ll~~l~-~~~~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 164 KELSFVDKVIDTDLKN-----NSAWSHRFFLLFSKK-HLATDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp HHHHHHHHHHHHCTTC-----HHHHHHHHHHHHSSG-GGCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHHHhC
Confidence 9999999999999884 356667777777777 6 999999999999885
No 172
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.98 E-value=8.1e-10 Score=76.20 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=75.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~-~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
|++++|+..+++++..+|+++. ++..+|.++...|++++|++.++++++++|+++.++.. +.+.+++..++
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~ 85 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYN 85 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHH
Confidence 8899999999999999999999 99999999999999999999999999999999988744 88899999999
Q ss_pred HhHhhccCCC
Q 029491 81 ECSSTWSSCS 90 (192)
Q Consensus 81 ~a~~~~p~~~ 90 (192)
+.....|+.+
T Consensus 86 ~~~~~~p~~~ 95 (99)
T 2kc7_A 86 KDMYNQLEHH 95 (99)
T ss_dssp CTTHHHHCCS
T ss_pred HHhccCcccc
Confidence 9999988854
No 173
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.98 E-value=3.6e-09 Score=93.02 Aligned_cols=115 Identities=7% Similarity=-0.088 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~-----------~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~ 72 (192)
..++++.++||++.+|++++++..+++++....- ..+|.+ ...++.++|+++.++.+++.++..+|++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 4789999999999999999999999887753211 112222 2245688999999999999999999999
Q ss_pred HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++|+..+++++.++|+ ...+.. +|..+...| ++++|++.|++++...
T Consensus 294 d~A~~~l~rAl~Ln~s----~~a~~l--lG~~~~~~G-~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 294 DESYQAINTGIDLEMS----WLNYVL--LGKVYEMKG-MNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHHCCC----HHHHHH--HHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCC----HHHHHH--HHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 9999999999999854 123333 788888888 9999999999999985
No 174
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1.1e-09 Score=83.83 Aligned_cols=120 Identities=9% Similarity=-0.021 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~-L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
.|++++|+..+++++...| ++.++..++.. +.+.+...+|++.++++++++|+++.++.++|.++..+|++++|+..+
T Consensus 53 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 53 TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5899999999999999999 88877776644 334445556899999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 80 ~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+++++..|+... ...+.+++.++..+| ++++|+..|++.+..
T Consensus 132 ~~~l~~~p~~~~---~~a~~~l~~~~~~~g-~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 132 WNILKVNLGAQD---GEVKKTFMDILSALG-QGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHTTCTTTTT---THHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhCcccCh---HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH
Confidence 999999987532 234456999999999 999999999999875
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=7.6e-09 Score=82.06 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=73.6
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHh----cCCH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQH----DCCF 72 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P--~da~A~h~lahvl~~----~Gr~ 72 (192)
+..+|+..+++++ .++++.++.++|..+.. .+++++|+..+++|+++.| +++.++.++|.++.. .++.
T Consensus 68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 5666667777663 34666677777776665 6677777777777777766 346777777777776 6677
Q ss_pred HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCC-----CHHHHHHHHHHhhhh
Q 029491 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS-----PMRKVLEIYDNHIWK 125 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~-----~~deAl~~yd~~i~~ 125 (192)
++|+.+++++... |.++ . ...++|.++....+ ++++|+.+|++++..
T Consensus 146 ~~A~~~~~~A~~~-~~~~---~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 146 VKASEYFKGSSSL-SRTG---Y--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHT-SCTT---H--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCH---H--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7777777777666 3322 2 22346666654322 567777777776665
No 176
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=3.4e-09 Score=90.19 Aligned_cols=124 Identities=8% Similarity=-0.046 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-------CHHHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------DCWSQHALCHVLQ 67 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-------da~A~h~lahvl~ 67 (192)
.|++.+|+..+++++... |..+.++..+|.++...|++++|...+++|+++.+. .+.++.++|.++.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 489999999999999863 235688999999999999999999999999998654 3568889999999
Q ss_pred hcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
.+|++++|+..+++++++.+..+. ........++|.++...| ++++|+..|++++..
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 999999999999999987654322 112345557999999999 999999999999984
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.95 E-value=7e-09 Score=74.95 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCc-ch
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MY 94 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~-~~ 94 (192)
+.++..+|..+...|++++|+..+++++.+.|... .++..+|.++..+|++++|+..++++++..+..+.. ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 56788999999999999999999999999987654 589999999999999999999999999887764321 12
Q ss_pred hhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 95 THNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 95 ~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
......+|.++...| ++++|+..+++.+...
T Consensus 89 ~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 334557999999999 9999999999998764
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.95 E-value=7.2e-10 Score=94.63 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-----------------WSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da-----------------~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
+..+..+..+|..+...|+|++|+..+++|+.++|++. .++.++|.++..+|++++|+..+++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567788999999999999999999999999999988 4999999999999999999999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
++.+.|++. . .+..+|.+++.+| ++++|+..|++++...
T Consensus 256 al~~~p~~~---~--a~~~lg~a~~~~g-~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 256 VLTEEEKNP---K--ALFRRGKAKAELG-QMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHCTTCH---H--HHHHHHHHHHTTT-CHHHHHHHHHHTTC--
T ss_pred HHHhCCCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 999998853 3 4456999999999 9999999999998774
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=2.4e-09 Score=98.35 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=105.3
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFME 80 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g--~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-r~~eai~~~~ 80 (192)
+.+++..+.+++..+|.+..++...++++...| ++++|.+.+.++++++|+|..|++..+.++...| +.++++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 789999999999999999999999999999999 7799999999999999999999999999999999 9999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhC--------------CCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG--------------HSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~--------------G~~~deAl~~yd~~i~~~ 126 (192)
++++.+|.+.+ .|-|.+..+..+ + .++++++.|+++|...
T Consensus 169 ~~I~~~p~n~s-----aW~~r~~ll~~l~~~~~~~~~~~~~~~-~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 169 SLITRNFSNYS-----SWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFTD 222 (567)
T ss_dssp TTTTTTCCCHH-----HHHHHHHHHHHHSCCCCSSSCCSSCHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCcc-----HHHHHHHHHHhhcccccccccccccHH-HHHHHHHHHHHHHhhC
Confidence 99999998643 444566655443 4 6899999999999875
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.93 E-value=4.9e-08 Score=84.48 Aligned_cols=133 Identities=13% Similarity=0.098 Sum_probs=115.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC--H
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--F 72 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~----------~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr--~ 72 (192)
++|+....+++..+|++..++...+.++...|. ++++.+.+.++|..+|.+.++++..+.++...|+ .
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 479999999999999999999999999988876 7899999999999999999999999999999995 8
Q ss_pred HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC-HHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHh
Q 029491 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-MRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (192)
Q Consensus 73 ~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~-~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (192)
+++++++++++..+|.+ .|.|-|.+.+.-..| . ++++++.+++.|... |+ ..........+|.++
T Consensus 127 ~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~~--p~---N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 127 ARELELCARFLEADERN-----FHCWDYRRFVAAQAA-VAPAEELAFTDSLITRN--FS---NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHC--CC---CHHHHHHHHHHHHHh
Confidence 99999999999999884 467778888877787 7 699999999999875 43 233445666666666
No 181
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=1.6e-08 Score=83.40 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=99.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH------HHHHHHHHHHHhc
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDF------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHD 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~------~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da------~A~h~lahvl~~~ 69 (192)
|+++++...+++++...+..+. .+..+|..+...|++++|+..+++|+.+.+... .++.++|.++..+
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence 7899999999999997776654 333467777778899999999999999765433 3799999999999
Q ss_pred CCHHHHHHHHHHhHhhccCC---CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~---~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|+..+++++...... .. .......++|.++..+| +|++|+..|++++...
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 169 GYLKKGIDLFEQILKQLEALHDNEE-FDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS 226 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 99999999999999644322 11 13335667999999999 9999999999999874
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=8.2e-09 Score=90.06 Aligned_cols=119 Identities=9% Similarity=0.058 Sum_probs=108.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-C-CFKEAVQF 78 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~-G-r~~eai~~ 78 (192)
+..++++....+++..+|++..++...+.++...| .++++.+.+.++|..||++.++++..+.++... + ++++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 35578999999999999999999999999999999 599999999999999999999999999999998 8 99999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHH--------HHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--------KVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~d--------eAl~~yd~~i~~~ 126 (192)
+++++..+|.+ .|.|-|.+.+.-..| .++ ++++.+++.|...
T Consensus 148 ~~k~L~~dpkN-----y~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 148 IHGSLLPDPKN-----YHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHTSSCTTC-----HHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCC-----HHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhC
Confidence 99999999884 467777777776666 677 9999999999874
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=2e-08 Score=79.54 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=98.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG----QMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g----~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~ 73 (192)
|+.++|+.++++++.. +++.++.++|..+.. + ++++|+..+++| .+++++.++.++|.++.. .++++
T Consensus 32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g~g~~~d~~ 106 (212)
T 3rjv_A 32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGATDVA 106 (212)
T ss_dssp TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCccCHH
Confidence 6889999999999764 789999999999988 7 899999999999 567899999999999998 89999
Q ss_pred HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhh
Q 029491 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~ 125 (192)
+|+.+++++....|.. . ......++|.++.. .+ ++++|+.+|++++..
T Consensus 107 ~A~~~~~~A~~~~~~~-~--~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 107 HAITLLQDAARDSESD-A--AVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHTSSTTSH-H--HHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCc-c--hHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc
Confidence 9999999999887621 0 01234459999988 76 899999999999876
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.87 E-value=1.1e-08 Score=71.88 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=61.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 51 L~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+|+++.++..+|.++..+|++++|+..+++++++.|+.+ . .+..+|.++...| ++++|+..|++++...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV---G--TYYHLGKLYERLD-RTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhh
Confidence 4899999999999999999999999999999999999864 2 4556999999999 9999999999999874
No 185
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.84 E-value=1.8e-08 Score=71.49 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 18 NQQEDFIFGILAFSLLELGQ---MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 18 ~p~~~~~~~~laf~L~e~g~---~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
+|+++.+++.+|-++...+. .++|...+++||+++|+++.+...+|.++..+|++++|+..+++.++..|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976665 7999999999999999999999999999999999999999999999999884
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.82 E-value=6.5e-09 Score=94.18 Aligned_cols=122 Identities=10% Similarity=-0.079 Sum_probs=98.6
Q ss_pred CCChHHHHHHHHhhcCC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY-----NQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~-----~p~~---~~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah 64 (192)
.|++++|+..+++++.. -|++ ...+.++|.++..+|+|++|+..++++|++. |+-+.+++++|.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 38899999999998874 2444 4678899999999999999999999999875 555678999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++..+|+++||+..+++++.+. |+.|.. ....=.++.++.++| .|.+|...|.++...
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~--~~~~~~l~~~~~e~~-~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT--KDLEAMRMQTEMELR-MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999654 332221 112224888999998 899999999887544
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=3.9e-08 Score=85.77 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=108.4
Q ss_pred CC-ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH----
Q 029491 1 MG-RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK---- 73 (192)
Q Consensus 1 ~G-~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~-g-~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~---- 73 (192)
+| +..+++..+.+++..+|.+..++...+.++... + +++++.+.+.++|.++|+|..|++..+.++...|+.+
T Consensus 101 l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~ 180 (349)
T 3q7a_A 101 LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISE 180 (349)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccch
Confidence 35 488999999999999999999999999999998 8 9999999999999999999999999999999999998
Q ss_pred ----HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCC-------HHHHHHHHHHhhhhh
Q 029491 74 ----EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-------MRKVLEIYDNHIWKE 126 (192)
Q Consensus 74 ----eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~-------~deAl~~yd~~i~~~ 126 (192)
++++++++++..+|.+. +.|-|.+.....+| + ++++++.+++.|...
T Consensus 181 ~~~~eELe~~~k~I~~dp~N~-----SAW~~R~~lL~~l~-~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVDGRNN-----SAWGWRWYLRVSRP-GAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHTTST-TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHhC
Confidence 99999999999998853 46667777776676 5 799999999999874
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=6.2e-08 Score=83.88 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=103.0
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFME 80 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~--~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr-~~eai~~~~ 80 (192)
..+.+..+.+++..+|.+..++...+.++...|+ ++++.+.+.++++++|.|..|++..+.|+...|+ .++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4678999999999999999999999999999994 9999999999999999999999999999999999 699999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhC--------------CCCHHHHHHHHHHhhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG--------------HSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~--------------G~~~deAl~~yd~~i~~~ 126 (192)
+++..+|.+.+ .|-|.+..+..+ + .+++++..++++|...
T Consensus 170 ~~I~~~p~N~S-----AW~~R~~ll~~l~~~~~~~~~~~~~~~-~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 170 SLITRNFSNYS-----SWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFTD 223 (331)
T ss_dssp HHHHHCSCCHH-----HHHHHHHHHHHHSCCC------CCCHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCHH-----HHHHHHHHHHHhhhccccccccccchH-HHHHHHHHHHHHHHhC
Confidence 99999998643 444555554433 4 5899999999999875
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=2.3e-09 Score=91.12 Aligned_cols=93 Identities=9% Similarity=-0.036 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh
Q 029491 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (192)
Q Consensus 28 laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~ 107 (192)
+|..|.+.|+|++|.+.+++.+..+|++. +++.+|.++...||+++++..++++... |+ + +.....+..+|.++-.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d-~-~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-PD-K-FLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-SC-H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-CC-c-ccHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999 9999999999999999999999977653 32 1 1112234459999999
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 029491 108 GHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 108 ~G~~~deAl~~yd~~i~~ 125 (192)
+| ++++|+..|++++..
T Consensus 184 LG-~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 184 LA-LFTEAERRLTEANDS 200 (282)
T ss_dssp TT-CHHHHHHHHHHHHTS
T ss_pred CC-CHHHHHHHHHHHhcC
Confidence 99 999999999998855
No 190
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=3.6e-08 Score=84.27 Aligned_cols=87 Identities=8% Similarity=-0.033 Sum_probs=78.6
Q ss_pred ChHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhc-CCHH
Q 029491 3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLEL-----GQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHD-CCFK 73 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~--~~~~~~~laf~L~e~-----g~~~eAe~~~rrALaL~P~d-a~A~h~lahvl~~~-Gr~~ 73 (192)
....+.+.++||++++|+ ++.+|..+|..+... |+.++|+++++|||+|||+. +.+....|..+..+ |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 356788999999999999 678999999999884 99999999999999999975 99999999999884 9999
Q ss_pred HHHHHHHHhHhhccCC
Q 029491 74 EAVQFMEECSSTWSSC 89 (192)
Q Consensus 74 eai~~~~~a~~~~p~~ 89 (192)
++.+.++++++..|+.
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998874
No 191
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.64 E-value=1.6e-07 Score=82.53 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=70.5
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 13 ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
.+++.+|.++.++..+|.++.-.|++++|++.++||+++|| ++.++..+|.++++.|++++|++.+++|++++|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 35678899999999999999989999999999999999997 47788899999999999999999999999999874
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.63 E-value=3.9e-07 Score=80.40 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=85.4
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC-----CHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS-L--LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-----CFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~-L--~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G-----r~~ 73 (192)
++..+|+.+++++. |+++.++..+|.. + ...+++++|+..+++|++ ++++.++.++|.++. .| +.+
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence 46788888888887 8888888888887 4 568888899999988874 558888899998887 67 889
Q ss_pred HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 74 eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~ 126 (192)
+|+.+++++. |.++ . ...++|.+|.. .. ++++|+.+|+++....
T Consensus 305 ~A~~~~~~Aa---~g~~---~--A~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 305 AAEAHFEKAV---GREV---A--ADYYLGQIYRRGYLGKV-YPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHTTT---TTCH---H--HHHHHHHHHHTTTTSSC-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCH---H--HHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHhhC
Confidence 9999998888 4432 3 33458887766 22 7889999998887763
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.61 E-value=6.5e-07 Score=66.71 Aligned_cols=110 Identities=5% Similarity=-0.042 Sum_probs=94.1
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQF 78 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~eai~~ 78 (192)
+..+|+..++++....+..+. +|..+...+.+++|...+++|.+. +++.+..++|.++.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 578899999999988644444 888888888999999999999987 899999999999998 8999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~ 126 (192)
++++.+.. + .. ...++|.++.. .+ ++++|+.+|+++....
T Consensus 84 ~~~Aa~~g--~---~~--a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGLN--D---QD--GCLILGYKQYAGKGVVK-NEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHTT--C---HH--HHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC--C---HH--HHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHHCC
Confidence 99999872 1 12 34459999988 77 8999999999998874
No 194
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.58 E-value=7.7e-07 Score=78.30 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=95.3
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE 74 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e 74 (192)
++.++|+..+++++.. +++.++..+|..+...| ++++|++.+++|++. +++.++.++|.++.. .+++++
T Consensus 310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 5788888888888775 56778888898888866 889999999999887 789999999999999 899999
Q ss_pred HHHHHHHhHhhccCCCCcchhhhHHHHHHHHHh----CCCCHHHHHHHHHHhhhhh
Q 029491 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 75 ai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~----~G~~~deAl~~yd~~i~~~ 126 (192)
|+.+++++.+..+ ...+.++|.++.. .+ ++++|..+|++++...
T Consensus 386 A~~~~~~A~~~~~-------~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQGL-------SAAQVQLGEIYYYGLGVER-DYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-------HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC
Confidence 9999999997631 2245569999887 67 8999999999999875
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.55 E-value=4.2e-07 Score=82.28 Aligned_cols=114 Identities=8% Similarity=-0.001 Sum_probs=84.1
Q ss_pred HHHcCCHHHHHHHHHHHhccc-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhH
Q 029491 32 LLELGQMSDAEEAAKKGLKIN-----KH---DCWSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNW 98 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL~-----P~---da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~ 98 (192)
+..+|+|++|+..++++|++. |+ -+.+++++|.++..+|++++|+..+++++.+. |+.|. .+...
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--~a~~l 396 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ--LGMAV 396 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH--HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHH
Confidence 667999999999999999864 44 45788999999999999999999999999654 23232 22234
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 149 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~ 149 (192)
-++|..|..+| +|++|..+|++++......-+... ....+.-.+|-...
T Consensus 397 ~nLa~~~~~~G-~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~ 445 (490)
T 3n71_A 397 MRAGLTNWHAG-HIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTE 445 (490)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Confidence 46999999999 999999999999987531112122 23444445554444
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.55 E-value=1.1e-06 Score=77.50 Aligned_cols=111 Identities=8% Similarity=0.008 Sum_probs=91.7
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcccCCCHHHHHHHHHH-H--HhcCCHHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----GQMSDAEEAAKKGLKINKHDCWSQHALCHV-L--QHDCCFKEA 75 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~----g~~~eAe~~~rrALaL~P~da~A~h~lahv-l--~~~Gr~~ea 75 (192)
+..+++.+++++....|.++..+..+|..+... +++++|+..+++|. |+++.++.++|.+ + ...|++++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 778899999999999999999888999988665 69999999999988 9999999999998 5 578999999
Q ss_pred HHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCC---CCHHHHHHHHHHhh
Q 029491 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHI 123 (192)
Q Consensus 76 i~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G---~~~deAl~~yd~~i 123 (192)
+.+++++.+.. + ..++ .++|.++.... .++++|+.+|++++
T Consensus 271 ~~~~~~Aa~~g--~---~~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 271 MKYLDNGRAAD--Q---PRAE--LLLGKLYYEGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHTT--C---HHHH--HHHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHCC--C---HHHH--HHHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence 99999998653 1 1333 35888887520 17999999999988
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.48 E-value=3.6e-06 Score=74.01 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=43.2
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~ 73 (192)
++..+|+..+++++.. +++.++..+|..+.. .+++++|+..+++|++. +++.++..+|.++.. .++++
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 3455555555555543 445555555555555 55555555555555432 355555555555555 55555
Q ss_pred HHHHHHHHhHhh
Q 029491 74 EAVQFMEECSST 85 (192)
Q Consensus 74 eai~~~~~a~~~ 85 (192)
+|+.+++++...
T Consensus 133 ~A~~~~~~a~~~ 144 (490)
T 2xm6_A 133 ESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 555555555443
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.47 E-value=2.2e-07 Score=82.87 Aligned_cols=87 Identities=8% Similarity=-0.006 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHhcc-----cCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhHHHHHH
Q 029491 37 QMSDAEEAAKKGLKI-----NKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVAL 103 (192)
Q Consensus 37 ~~~eAe~~~rrALaL-----~P~da---~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~WhlAl 103 (192)
+|++|+..++++|++ -|+++ ..+.++|.++..+|+++||+..+++++.+. |+.|. .+...-++|.
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--~a~~l~nLa~ 390 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN--VASMWLKLGR 390 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHH
Confidence 577777777777764 24443 455667777777777777777777777432 23332 2333335777
Q ss_pred HHHhCCCCHHHHHHHHHHhhhhh
Q 029491 104 CYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 104 ~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.|..+| +|++|...|++++...
T Consensus 391 ~~~~qg-~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 391 LYMGLE-NKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHH
Confidence 777776 6777777777777665
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.40 E-value=7.9e-07 Score=79.30 Aligned_cols=88 Identities=8% Similarity=-0.097 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHhhcCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~-----~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah 64 (192)
.|++++|+..+++++.. -|+++ ..+.++|.++..+|+|++|+..++++|++. |+-+..++++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 37899999999999874 35655 557888999999999999999999999873 556678999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccC
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
++..+|+++||+..+++++.+.-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988644
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=1e-06 Score=78.23 Aligned_cols=92 Identities=7% Similarity=-0.107 Sum_probs=76.4
Q ss_pred HHHcCCHHHHHHHHHHHhcc-----cCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc-----cCCCCcchhhhH
Q 029491 32 LLELGQMSDAEEAAKKGLKI-----NKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNW 98 (192)
Q Consensus 32 L~e~g~~~eAe~~~rrALaL-----~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-----p~~~~~~~~h~~ 98 (192)
+...|+|++|++.++++|++ -|++ +..+.+++.++..+|++++|+..+++++++. |..|. .+...
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--~a~~l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV--RGVQV 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH--HHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH--HHHHH
Confidence 45689999999999999986 3555 4678899999999999999999999999654 33332 34455
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.++|..|..+| ++++|+..|++++...
T Consensus 375 ~nLa~~~~~~g-~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQG-MFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 67999999999 9999999999999875
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.3e-06 Score=70.47 Aligned_cols=146 Identities=9% Similarity=0.005 Sum_probs=112.9
Q ss_pred CChHHHHHHHHhhcCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHH------
Q 029491 2 GRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS------ 58 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-----------------~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A------ 58 (192)
|++.+|++.+.+++...|... .++..+|.++...|++++|.+.+.+++.+.+....+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 789999999999999877543 257889999999999999999999999988776543
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHH
Q 029491 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEV 137 (192)
Q Consensus 59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~ 137 (192)
...++.+....|+.++++..+++++...+.... +......-.+|..+.+.| +|++|+.++.+.+.... ..+....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~---~~~~~~~ 173 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREFK---KLDDKPS 173 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHT---TSSCSTH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHH---hcccchh
Confidence 456788999999999999999999976554321 234445567999999999 99999999998876642 1222234
Q ss_pred HHHHHHHHHHhhhc
Q 029491 138 YLNALGLLLRVYVR 151 (192)
Q Consensus 138 ~~da~sLL~Rl~l~ 151 (192)
.+..-..+.|+.+.
T Consensus 174 ~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 174 LVDVHLLESKVYHK 187 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666654
No 202
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.35 E-value=4.3e-06 Score=71.39 Aligned_cols=105 Identities=9% Similarity=-0.086 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHhc-----CCHHHHHHH
Q 029491 17 YNQQEDFIFGILAFSLLE-----LG------QMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHD-----CCFKEAVQF 78 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e-----~g------~~~eAe~~~rrALaL~P~--da~A~h~lahvl~~~-----Gr~~eai~~ 78 (192)
.+|+++.++.-.|.++.. .| ...+|+...+||++|+|+ +.-++..+|..+... |+.++|...
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 567777666666555433 12 356799999999999999 888999999998884 999999999
Q ss_pred HHHhHhhccCCCCcchhhhHHHHHHHHHhC-CCCHHHHHHHHHHhhhhh
Q 029491 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEG-HSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 79 ~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~-G~~~deAl~~yd~~i~~~ 126 (192)
++++++++|+.+ +..++. +|-++... | +++++.+.+++++...
T Consensus 227 ferAL~LnP~~~--id~~v~--YA~~l~~~~g-d~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 227 FEHLTRYCSAHD--PDHHIT--YADALCIPLN-NRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHCCTTC--SHHHHH--HHHHTTTTTT-CHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCC--chHHHH--HHHHHHHhcC-CHHHHHHHHHHHHcCC
Confidence 999999999743 255555 78877664 7 8999999999999975
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.34 E-value=2.9e-06 Score=72.87 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=96.5
Q ss_pred CChHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC------CCHHHHHHHHHHHHhcC--C
Q 029491 2 GRPDLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQHDC--C 71 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p--~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P------~da~A~h~lahvl~~~G--r 71 (192)
|+.++|+..+.+++...| ++..+..+.+.++..+|+.+.|.+.+++..+.+| +.....-+-++|...+| +
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 899999999999999887 8889999999999999999999999999999999 44455555577788888 9
Q ss_pred HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 72 ~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
..+|...|++.....|+.. .....|+ +++.+| ++++|.+.++..+..
T Consensus 194 ~q~A~~~f~El~~~~p~~~---~~~lLln---~~~~~g-~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 194 ATSNFYYYEELSQTFPTWK---TQLGLLN---LHLQQR-NIAEAQGIVELLLSD 240 (310)
T ss_dssp TTHHHHHHHHHHTTSCSHH---HHHHHHH---HHHHHT-CHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhCCCcc---cHHHHHH---HHHHcC-CHHHHHHHHHHHHHh
Confidence 9999999999988776511 1223333 678888 999999999866553
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.28 E-value=5.8e-06 Score=58.29 Aligned_cols=69 Identities=9% Similarity=-0.095 Sum_probs=62.2
Q ss_pred cCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 52 NKHDCWSQHALCHVLQHDCC---FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 52 ~P~da~A~h~lahvl~~~Gr---~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+|+|+..+..+|.++.+.+. .++|...+++++..+|+++ . ..+-+|..++..| +|++|+..|++.+...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---r--A~~~lg~~~~~~g-~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---A--ALSLIANDHFISF-RFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 69999999999999998887 7999999999999999974 3 4455999999998 9999999999998875
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.25 E-value=1.9e-06 Score=76.61 Aligned_cols=88 Identities=7% Similarity=0.018 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHhhcCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccc--------CCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~-----~p~~~---~~~~~laf~L~e~g~~~eAe~~~rrALaL~--------P~da~A~h~lah 64 (192)
.|++++|+..+++++.. -|+++ ..+.++|.++..+|+|++|+..++++|++. |+-+..+.++|.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 37889999999999875 24554 567888999999999999999999999864 445567889999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccC
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
++..+|+++||+..+++++++.-.
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976533
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.20 E-value=1.4e-05 Score=80.41 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=83.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|.+.++|+ +.+.++..+|.+++..|++++|+..+.+| +|+.++..++.++...|+++|+++++..
T Consensus 1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555544 67899999999999999999999999887 9999999999999999999999999988
Q ss_pred hHhhccCC-------------CC------c---chhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491 82 CSSTWSSC-------------SS------F---MYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 82 a~~~~p~~-------------~~------~---~~~h~~WhlAl~~l~~G~~~deAl~~yd~~ 122 (192)
+....+.. .. | ...-.+..+|..+.+.| +|++|...|..+
T Consensus 1160 Ark~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg-~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1160 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNV 1221 (1630)
T ss_pred HHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhh
Confidence 87655331 00 0 00012345777777777 777777777663
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=1.2e-05 Score=62.37 Aligned_cols=83 Identities=8% Similarity=-0.111 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccc-C-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKIN-K-HDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~~~laf~L~e~g---~~~eAe~~~rrALaL~-P-~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.+++.+.+.++..|.+..+...+|++|...+ ++++++...+..+..+ | ++...+..+|-.+...|++++|+.+++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4455566666666667777777777777766 5557777777777776 6 556777777777777777777777777
Q ss_pred HhHhhccC
Q 029491 81 ECSSTWSS 88 (192)
Q Consensus 81 ~a~~~~p~ 88 (192)
++++..|+
T Consensus 96 ~lL~ieP~ 103 (152)
T 1pc2_A 96 GLLQTEPQ 103 (152)
T ss_dssp HHHHHCTT
T ss_pred HHHhcCCC
Confidence 77777766
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.08 E-value=4.1e-05 Score=56.73 Aligned_cols=79 Identities=13% Similarity=-0.037 Sum_probs=73.0
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh----cCCHHH
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE 74 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e----~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~----~Gr~~e 74 (192)
..++|+.+++++... +++.++.++|..+.. .+++++|...+++|.+. +++.+..++|.++.. .++.++
T Consensus 40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~ 115 (138)
T 1klx_A 40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ 115 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 456688999999876 889999999999999 89999999999999987 899999999999999 999999
Q ss_pred HHHHHHHhHhh
Q 029491 75 AVQFMEECSST 85 (192)
Q Consensus 75 ai~~~~~a~~~ 85 (192)
|+.+++++.+.
T Consensus 116 A~~~~~~Aa~~ 126 (138)
T 1klx_A 116 AVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 99999999987
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.03 E-value=1.2e-05 Score=56.98 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYN-------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~-------p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv 65 (192)
.|++..|..++++|+... +..+.++..+|+++.+.|++++|...+++|+.++|+++.+.+++...
T Consensus 18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 367777888888777643 23467777888888888888888888888888888888887777633
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.01 E-value=3.7e-05 Score=59.58 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhHhhc-cCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC---CFKEAVQFMEECSSTW-SSCSSFMYTHNWWHVALCYLEGHSPM 112 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~G---r~~eai~~~~~a~~~~-p~~~~~~~~h~~WhlAl~~l~~G~~~ 112 (192)
....+++.+.+.++.+|.+..+..++|++|.... ..++||..++..++.+ |.. ......++|+.++.+| +|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~----~rd~lY~LAv~~~kl~-~Y 87 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE----QRDYVFYLAVGNYRLK-EY 87 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH----HHHHHHHHHHHHHHTS-CH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc----hHHHHHHHHHHHHHcc-CH
Confidence 3567889999999999999999999999999998 6669999999999988 632 1234456999999999 99
Q ss_pred HHHHHHHHHhhhhh
Q 029491 113 RKVLEIYDNHIWKE 126 (192)
Q Consensus 113 deAl~~yd~~i~~~ 126 (192)
++|++.+++.+..+
T Consensus 88 ~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 88 EKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999985
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.93 E-value=0.00011 Score=73.95 Aligned_cols=106 Identities=7% Similarity=-0.022 Sum_probs=86.8
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC--------------------------
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------------------------- 54 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~-------------------------- 54 (192)
.|++.+|++++.++ +++..+...+.++.+.|+|++|.+.+..|...+|.
T Consensus 1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~ 1192 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192 (1630)
T ss_pred CCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhC
Confidence 48888999999876 77888888899999999999999888887765533
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 55 -DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 55 -da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+...+..+|..++..|++++|+.+|.++ .+|..+|.++..+| ++++|++.|+++..+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLg-e~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLG-EYQAAVDGARKANST 1250 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhC-CHHHHHHHHHHhCCH
Confidence 2345667899999999999999999885 15667999999999 899999999988655
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.85 E-value=0.00011 Score=51.87 Aligned_cols=69 Identities=7% Similarity=-0.137 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~-------P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
+.-+..+|..+.+.|+|.+|+.-+++|+.+. +..+..+..+|.++..+|++++|+..+++++.+.|+++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3445567778889999999999999999974 34578899999999999999999999999999998864
No 213
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00016 Score=61.23 Aligned_cols=124 Identities=7% Similarity=-0.101 Sum_probs=99.0
Q ss_pred CChHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------cCCCHHHHHHHHHHHHhc
Q 029491 2 GRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHD 69 (192)
Q Consensus 2 G~~~~al~~~~ral~~------~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL------~P~da~A~h~lahvl~~~ 69 (192)
|+.+.+...+++++.. .+....++..+|.++.+.|+|++|....++++.. +|..+.++..++.++..+
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 5667777777776654 2344678889999999999999999999999886 456678999999999999
Q ss_pred CCHHHHHHHHHHhHhhccCCCCc--chhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 70 CCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 70 Gr~~eai~~~~~a~~~~p~~~~~--~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
|++++|...+++++...+..+.. ......-..+..+...| +|++|...|..++...
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK-DYKTAFSYFFESFESY 246 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHh
Confidence 99999999999999887664321 12334456788888888 9999999998887653
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.84 E-value=0.00015 Score=62.11 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=89.8
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 7 al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P--~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
++..+++.+...+.+...+.++|.++...|++++|.+.+.++|..+| ++..+...++.++..+||+++|...+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34556667766566677778999999999999999999999999997 9999999999999999999999999999988
Q ss_pred hcc-----CCCCcchhhhHHHHHHH--HH-hCCCCHHHHHHHHHHhhhh
Q 029491 85 TWS-----SCSSFMYTHNWWHVALC--YL-EGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 85 ~~p-----~~~~~~~~h~~WhlAl~--~l-~~G~~~deAl~~yd~~i~~ 125 (192)
..| ++.. . . .++.+ .+ ..|+++.+|..+|++....
T Consensus 165 ~~~d~~~~~d~~--l--~--~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 165 AIEDTVSGDNEM--I--L--NLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HSCHHHHHHHHH--H--H--HHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred cCccccccchHH--H--H--HHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 877 2221 1 2 24433 32 2334899999999996544
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.81 E-value=6.7e-06 Score=73.87 Aligned_cols=104 Identities=9% Similarity=0.073 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
+|++++++...+.+...-++ +.+...+++++..+|+++++++.++ .|+. .++..+|..+...|++++|+.+|.
T Consensus 74 ~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36777777777777764333 6777778888888888888777764 2544 499999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
++ .+|..+|.++..+| +|++|++.|+++-.+
T Consensus 147 ~a-------------~n~~~LA~~L~~Lg-~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 147 NV-------------SNFGRLASTLVHLG-EYQAAVDGARKANST 177 (449)
T ss_dssp HT-------------TCHHHHHHHHHTTT-CHHHHHHHHHHHTCH
T ss_pred Hh-------------hhHHHHHHHHHHhc-cHHHHHHHHHHcCCc
Confidence 66 15567999999999 999999999998544
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.64 E-value=0.001 Score=62.37 Aligned_cols=74 Identities=14% Similarity=-0.041 Sum_probs=33.7
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-EAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 10 ~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe-~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
.+++++...|.++.++.+++--+...|+.++|. ..+.+|+..+|.+...+...+...+..|+++++...|++++
T Consensus 331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 331 VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444444444444444444444444444443 44444444444444444444444444444444444444444
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.56 E-value=0.00076 Score=63.24 Aligned_cols=153 Identities=8% Similarity=0.016 Sum_probs=111.6
Q ss_pred CChHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----------cCC-----------CHHH
Q 029491 2 GRPDLCF-DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----------NKH-----------DCWS 58 (192)
Q Consensus 2 G~~~~al-~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL-----------~P~-----------da~A 58 (192)
|+.++++ ..++|++...|.+..++..++...+..|++++|.+.+++++.. .|. .+.+
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 5566786 9999999999999999999999999999999999999999985 253 3557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHH
Q 029491 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 138 (192)
Q Consensus 59 ~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~ 138 (192)
+-..+......|..++|...+.+|+.. .+. ...+.+...|......|++++.|..+|++.+..- +. .....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~---~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~---~~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRL---KKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--AT---DGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHT---GGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TT---CHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CC---chHHH
Confidence 888888888999999999999999876 243 2345554455555555536999999999999984 32 12333
Q ss_pred HHHHHHHHHhhhcCcccchhchHHHHHHHHhh
Q 029491 139 LNALGLLLRVYVRGELDVFGNRLKVLADCVAD 170 (192)
Q Consensus 139 ~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~ 170 (192)
+.-+.+++.+ |. .++=..+.+....
T Consensus 508 ~~y~~fe~~~---~~----~~~AR~lferal~ 532 (679)
T 4e6h_A 508 NKYLDFLIYV---NE----ESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHH---TC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHhC---CC----HHHHHHHHHHHHH
Confidence 4455555543 32 2344455554444
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.53 E-value=0.00036 Score=62.62 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=53.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|++++|...+.++ ..+..+|.+|...|+|++|++++++| +++.++..++.++...|+++.|......
T Consensus 136 g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 136 KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp -CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred CCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4555555555554 23455666666666666666666666 3555666666666666666555443332
Q ss_pred hHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
+-..|+. ..-+..+|...| ++++++.++++++..
T Consensus 203 -L~~~ad~--------l~~lv~~Yek~G-~~eEai~lLe~aL~l 236 (449)
T 1b89_A 203 -IVVHADE--------LEELINYYQDRG-YFEELITMLEAALGL 236 (449)
T ss_dssp -TTTCHHH--------HHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred -HHhCHhh--------HHHHHHHHHHCC-CHHHHHHHHHHHhCC
Confidence 2222221 111333445555 666666666666554
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.37 E-value=0.00085 Score=50.30 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHhhc-cCCCCcchhhhHHHHHHHHHhCCCCH
Q 029491 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE---AVQFMEECSSTW-SSCSSFMYTHNWWHVALCYLEGHSPM 112 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~e---ai~~~~~a~~~~-p~~~~~~~~h~~WhlAl~~l~~G~~~ 112 (192)
....++..+.++++.++.+..+.+++|+++.......+ ||..++..++.. |.. .-..-..+|+.++.+| +|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~----~Rd~lY~LAvg~yklg-~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE----QRDYVFYLAVGNYRLK-EY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH----HHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHhh-hH
Confidence 45668888999999999999999999999999999988 999999999876 421 2223446999999999 99
Q ss_pred HHHHHHHHHhhhhh
Q 029491 113 RKVLEIYDNHIWKE 126 (192)
Q Consensus 113 deAl~~yd~~i~~~ 126 (192)
++|+...+..+..+
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999885
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.003 Score=49.47 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHhHhhcc---CCC-
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---------SQHALCHVLQHDCCFKEAVQFMEECSSTWS---SCS- 90 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~---------A~h~lahvl~~~Gr~~eai~~~~~a~~~~p---~~~- 90 (192)
++.--.-.+.+.|.|+-|+-.+..++++..+++. +...+|.+++.+|.+..|...|++++..-. ..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333444678999999999999999998877776 889999999999999999999999874322 111
Q ss_pred ----------------CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491 91 ----------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 91 ----------------~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~ 122 (192)
.+-....-+.+|.||+++| ++++|+...+..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~-~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK-QDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTT-CHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHC-CHHHHHHHHhcC
Confidence 0112345567999999999 999999998664
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.99 E-value=0.0073 Score=54.01 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHH-------------------
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV------------------- 65 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahv------------------- 65 (192)
......+++++...|.++.++.+++--+...|+.++|...++||+.. |++...+...+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 34567899999999999999999999999999999999999999999 9987655443332
Q ss_pred ---------------------HHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 66 ---------------------LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 66 ---------------------l~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
....|..+.|...++++ ..|.. ..|.|.-.|......|++.+.|..+|+..+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEGV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 11256688888889988 33432 3466655565555455369999999999998
Q ss_pred hh
Q 029491 125 KE 126 (192)
Q Consensus 125 ~~ 126 (192)
.-
T Consensus 349 ~~ 350 (493)
T 2uy1_A 349 KH 350 (493)
T ss_dssp HC
T ss_pred HC
Confidence 63
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.83 E-value=0.011 Score=51.44 Aligned_cols=83 Identities=11% Similarity=-0.073 Sum_probs=54.8
Q ss_pred CChHHHHHHHHhhcCCCCCCH--------HH--------------HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQED--------FI--------------FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~--------~~--------------~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~ 59 (192)
|+.+++.+.+++|+.+|.+.. ++ .-.++-.+.+.|++++|...++++++.+|-+-.++
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 567788888999999874321 11 11233344556777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 60 HALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 60 h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
..+-.++...||..+|++.|++..+
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777766654
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.57 E-value=0.015 Score=52.05 Aligned_cols=113 Identities=4% Similarity=-0.092 Sum_probs=81.0
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHH----------------------------------------HHHcCCHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS----------------------------------------LLELGQMSDA 41 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~----------------------------------------L~e~g~~~eA 41 (192)
|+.++++..++|++.. |.+...+..++.. +...+..++|
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 6788888888888888 8775444433322 2236678999
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH
Q 029491 42 EEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (192)
Q Consensus 42 e~~~rrALaL~P~da~A~h~lahvl~~~G-r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd 120 (192)
...+.+| ...+.....+-..+..-...| +.+.|...+++++...|+.+ ..||-.+-+....| +.+.|..+|+
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~-----~~~~~yid~e~~~~-~~~~aR~l~e 378 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST-----LLKEEFFLFLLRIG-DEENARALFK 378 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 9999999 433334444444455555555 59999999999999887743 25666777777888 8999999998
Q ss_pred Hh
Q 029491 121 NH 122 (192)
Q Consensus 121 ~~ 122 (192)
+.
T Consensus 379 r~ 380 (493)
T 2uy1_A 379 RL 380 (493)
T ss_dssp HS
T ss_pred HH
Confidence 86
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.42 E-value=0.19 Score=44.92 Aligned_cols=119 Identities=7% Similarity=-0.023 Sum_probs=56.2
Q ss_pred CChHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHh
Q 029491 2 GRPDLCFDIIHQVLPY--NQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQH 68 (192)
Q Consensus 2 G~~~~al~~~~ral~~--~p~~~~~~~~laf~L~e~---------g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~ 68 (192)
|+.++|+..+.+.... .|+ ...++.+=.++... +.+++|.+++++-... .| |...+.++-..+..
T Consensus 40 G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~ 117 (501)
T 4g26_A 40 GDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVA 117 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHh
Confidence 5666666666655442 232 22333222222222 2245565555554332 23 44566666666666
Q ss_pred cCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhh
Q 029491 69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (192)
Q Consensus 69 ~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~ 127 (192)
.|+.++|+..+++.....-. |. ....+. +=..+...| +.++|.++|+.......
T Consensus 118 ~g~~~~A~~l~~~M~~~g~~-Pd-~~tyn~--lI~~~~~~g-~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 118 KDDPEMAFDMVKQMKAFGIQ-PR-LRSYGP--ALFGFCRKG-DADKAYEVDAHMVESEV 171 (501)
T ss_dssp HTCHHHHHHHHHHHHHTTCC-CC-HHHHHH--HHHHHHHTT-CHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHcCCC-Cc-cceehH--HHHHHHHCC-CHHHHHHHHHHHHhcCC
Confidence 66666666666665543211 11 011111 222233445 66666666666655543
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.28 E-value=0.1 Score=46.74 Aligned_cols=120 Identities=10% Similarity=-0.103 Sum_probs=88.1
Q ss_pred hHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 4 PDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 4 ~~~al~~~~ral~~-~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL--~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.++|.+.+.+.... -+-|...++.+--++...|++++|++.+++-... .| |...+..+-..+...|+.++|...++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHH
Confidence 45566666654442 1235667788888899999999999999987664 45 57789999999999999999999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhhhCC
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEK 129 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~~~~ 129 (192)
+....--. |. ....+. +=.++...| +.++|.+++++.......|
T Consensus 165 ~M~~~G~~-Pd-~~ty~~--Li~~~~~~g-~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 165 HMVESEVV-PE-EPELAA--LLKVSMDTK-NADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHTTCC-CC-HHHHHH--HHHHHHHTT-CHHHHHHHHHHHHHHTSSB
T ss_pred HHHhcCCC-CC-HHHHHH--HHHHHhhCC-CHHHHHHHHHHHHHhCCCc
Confidence 98865333 22 122222 444556778 9999999999987765434
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.20 E-value=0.019 Score=42.82 Aligned_cols=85 Identities=9% Similarity=-0.137 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccc-C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD---AEEAAKKGLKIN-K-HDCWSQHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~e---Ae~~~rrALaL~-P-~da~A~h~lahvl~~~Gr~~eai~~~ 79 (192)
..+.+.+.+.++..+........+|++|........ ++.+.+..+.-+ | +.-..+..+|..++..|++++|+.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345666777777777888999999999999887666 999999999887 6 67889999999999999999999999
Q ss_pred HHhHhhccCC
Q 029491 80 EECSSTWSSC 89 (192)
Q Consensus 80 ~~a~~~~p~~ 89 (192)
+..++..|++
T Consensus 98 ~~lL~~eP~n 107 (126)
T 1nzn_A 98 RGLLQTEPQN 107 (126)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCC
Confidence 9999999885
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.06 E-value=0.015 Score=45.47 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccC-------------------------CCHHHHHHHHHHHHhcCCHHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK-------------------------HDCWSQHALCHVLQHDCCFKEAVQ 77 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P-------------------------~da~A~h~lahvl~~~Gr~~eai~ 77 (192)
.++.++|.++...|+|.+|+..+++||.+.. .+...-.-++.++...|++++||.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 4889999999999999999999999977652 122577889999999999999999
Q ss_pred HHHHh
Q 029491 78 FMEEC 82 (192)
Q Consensus 78 ~~~~a 82 (192)
.++..
T Consensus 144 ~Le~I 148 (167)
T 3ffl_A 144 ILDGI 148 (167)
T ss_dssp HHHTS
T ss_pred HHhcC
Confidence 99874
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.97 E-value=0.018 Score=44.63 Aligned_cols=98 Identities=12% Similarity=-0.005 Sum_probs=80.5
Q ss_pred HHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 5 DLCFDIIHQVLPYNQ--------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 5 ~~al~~~~ral~~~p--------~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
.+.++.++||+..-| .+.+.+-.+|. +.+.++.++|.+.++.++.+....+-.|-..|+--..+|..+.|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 778889999887554 34577777774 478899999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhccCCCCcchhhhHHHHHHHHHhCC
Q 029491 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (192)
Q Consensus 77 ~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G 109 (192)
..+.+++...|.... -...|+.-|..|
T Consensus 115 kILg~AiG~~~k~~~------~le~a~~nl~~~ 141 (161)
T 4h7y_A 115 QLLQKAVERGAVPLE------MLEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHHTTCBCHH------HHHHHHHHHHTT
T ss_pred HHHHHHhccCCCcHH------HHHHHHHhhhcC
Confidence 999999999887321 123677777776
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.92 E-value=0.23 Score=37.76 Aligned_cols=80 Identities=8% Similarity=-0.055 Sum_probs=61.6
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHH
Q 029491 41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK---EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (192)
Q Consensus 41 Ae~~~rrALaL~P~da~A~h~lahvl~~~Gr~~---eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~ 117 (192)
.++.+.+-+. ++-++.+.++.|++|......+ +||..++...+..|... -..-..+|+.++.+| +|++|++
T Consensus 25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~----RdcLYyLAvg~ykl~-~Y~~Ar~ 98 (144)
T 1y8m_A 25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYYLTIGCYKLG-EYSMAKR 98 (144)
T ss_dssp HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH----HHHHHHHHHHHHTTT-CHHHHHH
T ss_pred HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHhh-hHHHHHH
Confidence 3444444322 3668899999999999988765 79999999999877532 223345999999999 9999999
Q ss_pred HHHHhhhhh
Q 029491 118 IYDNHIWKE 126 (192)
Q Consensus 118 ~yd~~i~~~ 126 (192)
..+..+..+
T Consensus 99 y~d~lL~~e 107 (144)
T 1y8m_A 99 YVDTLFEHE 107 (144)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999999885
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.47 E-value=0.36 Score=41.67 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=66.6
Q ss_pred HHcCCHHHHHHHHHHHhcccC--------CCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 33 LELGQMSDAEEAAKKGLKINK--------HDCWSQ--------------HALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P--------~da~A~--------------h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
...|+.++|.+.+++||++=. ...|+. ..++..+...|++++++..+++.+..+|-.-
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 346899999999999999853 233432 3566778899999999999999999988743
Q ss_pred CcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhh
Q 029491 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 91 ~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~ 124 (192)
. .+-.+-.++...| +..+|++.|++...
T Consensus 206 ---~--~~~~lm~al~~~G-r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 206 ---P--LWTQLITAYYLSD-RQSDALGAYRRVKT 233 (388)
T ss_dssp ---H--HHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred ---H--HHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 2 3334667777888 99999999987654
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.46 E-value=0.27 Score=36.92 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=60.3
Q ss_pred HHHHHHHHhcccCC-CHHHHHHHHHHHHhcCCH---HHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHH
Q 029491 41 AEEAAKKGLKINKH-DCWSQHALCHVLQHDCCF---KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116 (192)
Q Consensus 41 Ae~~~rrALaL~P~-da~A~h~lahvl~~~Gr~---~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl 116 (192)
.++.+.+=+ +|. ++.+.++.|+++...... .+||..++...+..|.. .-...+.+|+.++.+| +|++|+
T Consensus 26 l~~qy~~E~--~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklg-dY~~Ar 98 (134)
T 3o48_A 26 LRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLG-EYSMAK 98 (134)
T ss_dssp HHHHHHHTT--GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHHHh--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhh-hHHHHH
Confidence 344454433 333 788999999999988776 36999999999877642 2345567999999998 899999
Q ss_pred HHHHHhhhhh
Q 029491 117 EIYDNHIWKE 126 (192)
Q Consensus 117 ~~yd~~i~~~ 126 (192)
+..+..+..+
T Consensus 99 ~y~d~lL~~e 108 (134)
T 3o48_A 99 RYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 9999988875
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.20 E-value=0.39 Score=37.14 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHhcccCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 17 YNQQEDFIFGILAFSLLELGQM------SDAEEAAKKGLKINKHDC--------WSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 17 ~~p~~~~~~~~laf~L~e~g~~------~eAe~~~rrALaL~P~da--------~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
..|.++..+..+.--++..|+. ++=.+.++||++--|-+- ..+-..| .+...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 4577888888888889999998 888999999999887642 2222233 235569999999999999
Q ss_pred HhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 83 ~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+.+ +..| +.+|-..|.+.+..| +.+.|..+..++|...
T Consensus 87 ~~~---hKkF--AKiwi~~AqFEiRqg-nl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 87 RAN---CKKF--AFVHISFAQFELSQG-NVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHH---CTTB--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred HHH---hHHH--HHHHHHHHHHHHHcc-cHHHHHHHHHHHhccC
Confidence 987 4556 566667888889998 8999999999999863
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.31 E-value=1.2 Score=40.32 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
.+.|++++|.+.++ ..++...+..+|.....+|+++.|+..|.++
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45666666666643 2355566666666666666666666666664
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.83 E-value=0.26 Score=37.05 Aligned_cols=70 Identities=7% Similarity=-0.165 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHhcccC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 21 EDFIFGILAFSLLELGQM---SDAEEAAKKGLKINK-HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~---~eAe~~~rrALaL~P-~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.+.....+|++|...... .+++.+.+..+.-+| +.-.-+.-+|..+...|++++|..+.+..++..|++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 467778888888887754 358888888888888 4567788888888889999999999999999888864
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.81 E-value=1.7 Score=36.25 Aligned_cols=116 Identities=10% Similarity=0.048 Sum_probs=75.5
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~ 81 (192)
|+.++++..+...+...|.|+.....+---|+-+|++++|....+-+.+++|...-.....-+... |...=++
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-------aE~~R~~ 83 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-------AAQARKD 83 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------HHHHHHH
Confidence 677888888888888899998888888888888999999999999999999887655444322211 1111111
Q ss_pred hHhhccCCCCcchhhhHH----HHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 82 CSSTWSSCSSFMYTHNWW----HVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 82 a~~~~p~~~~~~~~h~~W----hlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
.+..... |.++....-| .-|+..+..| +.++|.++-+++....
T Consensus 84 vfaG~~~-P~~~g~~~~w~~~ll~Al~~~~~G-~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 84 FAQGAAT-AKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEELR 130 (273)
T ss_dssp HTTSCCC-EECCCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred HHcCCCC-CCCCCCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcC
Confidence 1211100 1111112223 4566666678 8999999988886663
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.54 E-value=0.22 Score=37.92 Aligned_cols=72 Identities=7% Similarity=-0.157 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhcccC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCC
Q 029491 19 QQEDFIFGILAFSLLELGQMS---DAEEAAKKGLKINK-HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~~---eAe~~~rrALaL~P-~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~ 90 (192)
.-.+.....+|++|.....-+ +++.+.+..+.-.| +.-.-+.-+|-.++..|++++|..+.+..++..|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 456788899999999887554 58889999998888 5668899999999999999999999999999999964
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.3 Score=46.37 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a 82 (192)
.+..-+--|...|+|+-|.+++++|+.+.|.+-..|..|+.|+..+|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444555667899999999999999999999999999999999999999999999887
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.40 E-value=0.61 Score=42.04 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+-.+|..-.-...++.|+..|++|+.++|++...+|-+|.+...+|+.-+++-+|.+++-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 3345666666677788999999999999999999999999999999999999999998874
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.71 E-value=1.4 Score=41.78 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=75.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhc--------ccCCCH----------HHHHHHHH
Q 029491 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLK--------INKHDC----------WSQHALCH 64 (192)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~~~laf~L~e~-g-~~~eAe~~~rrALa--------L~P~da----------~A~h~lah 64 (192)
+.++..+++....+|.....+...-....+. + +=-+|.....+++. +++.+. ..++.-+-
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 5577777777777786554333222222222 2 23346666666663 445553 34555566
Q ss_pred HHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHh
Q 029491 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (192)
Q Consensus 65 vl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~ 122 (192)
-+..+|+++-|+....++...-|.. | -.|-.||.+|..+| +|+.|+-.....
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPse--F---~tW~~La~vYi~l~-d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDS--F---ESWYNLARCHIKKE-EYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSC--H---HHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchh--h---HHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence 6777899999999999999998883 3 36778999999999 999999776443
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.40 E-value=0.88 Score=38.06 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCC
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~ 89 (192)
.+...|.+++|.+.....|.-+|.|+..-..+-..|+..|+.+.|..-++.+..+.|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999999999999999999999999999999999999884
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.88 E-value=1.7 Score=42.65 Aligned_cols=149 Identities=10% Similarity=-0.034 Sum_probs=90.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-ccCC----------------------CHHHHHHHHHHHHhcC
Q 029491 14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKH----------------------DCWSQHALCHVLQHDC 70 (192)
Q Consensus 14 al~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa-L~P~----------------------da~A~h~lahvl~~~G 70 (192)
.++..|.++..-.++|.++..+|++++|...+++|-. +.++ -+.=+.-+...++..|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 3455677888889999999999999999999999832 1111 1112344667888999
Q ss_pred CHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHH----HhhhhhhCCCCCCChHHHH--HHHHH
Q 029491 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD----NHIWKELEKPDAVHPEVYL--NALGL 144 (192)
Q Consensus 71 r~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd----~~i~~~~~~~~~~~~~~~~--da~sL 144 (192)
.++.++.+...|+..-+..+.-+....|-.+=.++++.| +|++|-...- ..+...+-+ .....++ +..+.
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~-~ye~Ay~aL~~~pd~~~r~~cLr---~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG-KFDAAHVALMVLSTTPLKKSCLL---DFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC-CSGGGGHHHHHHHHSSSCHHHHH---HHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHhCCChhh
Confidence 999999999999976554332112222223444567888 8999865542 222221100 0001111 45677
Q ss_pred HHHhhhcCcccchhchHHHHHH
Q 029491 145 LLRVYVRGELDVFGNRLKVLAD 166 (192)
Q Consensus 145 L~Rl~l~g~~~~~~~rw~~l~~ 166 (192)
|..+.+.|--..|.+-....|.
T Consensus 990 L~~lpf~gl~~~Vd~IL~~kAr 1011 (1139)
T 4fhn_B 990 LLNYSMPTLRQDVDNLLERKAF 1011 (1139)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHH
T ss_pred hhCCCCccHHHHHHHHHHHHHH
Confidence 8888887764444544444443
No 242
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.22 E-value=14 Score=36.68 Aligned_cols=102 Identities=9% Similarity=-0.105 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKI----NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL----~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~ 98 (192)
..++.+=.++...|++++|.+++++--.. -.-|...+.++-+.+...|+.+||+..+++....--. |. ..+.+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-PD-vvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PD-LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CC-HHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-Cc-HHHHHH
Confidence 45677777999999999999999654322 1336789999999999999999999999998865333 22 233333
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhhhhC
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWKELE 128 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~~~~ 128 (192)
-=-+++ ..|...++|..+++......+.
T Consensus 206 LI~glc--K~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 206 ALQCMG--RQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHH--HHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHHHcCCC
Confidence 222333 3452357899999999988653
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.37 E-value=3.7 Score=37.13 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=47.8
Q ss_pred CChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------hcccCCCHHHHHHHHHHHHhcCCHH
Q 029491 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKG--------LKINKHDCWSQHALCHVLQHDCCFK 73 (192)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrA--------LaL~P~da~A~h~lahvl~~~Gr~~ 73 (192)
|++++|++.+. ..++...+..+|-...+.|+++.|+.++.++ |....++...+-.+++.....|++.
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~ 740 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFN 740 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchH
Confidence 45555555443 3366788899999999999999999999986 2222444445555555555555555
Q ss_pred HHHHHH
Q 029491 74 EAVQFM 79 (192)
Q Consensus 74 eai~~~ 79 (192)
+|...+
T Consensus 741 ~A~~~~ 746 (814)
T 3mkq_A 741 LAFNAY 746 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.24 E-value=7.1 Score=34.02 Aligned_cols=99 Identities=9% Similarity=0.001 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccC--CCCcchhhhH
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKH--D----CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS--CSSFMYTHNW 98 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~--d----a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~--~~~~~~~h~~ 98 (192)
-+|-.+.+.|+|.+|.+...+.+.--.. | ...+-.-..++..+|+...+.+.+.++...-.. +++.+.+-+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788899999999999998888773322 2 234445566778899999999999999855422 2232456677
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHHhhhhh
Q 029491 99 WHVALCYL-EGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 99 WhlAl~~l-~~G~~~deAl~~yd~~i~~~ 126 (192)
.--|++++ ..+ +|.+|-..|=.+...-
T Consensus 184 ~~~Gi~~l~~~r-dyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADER-DFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhcc-CHHHHHHHHHHHHhcc
Confidence 77999999 888 9999999988776543
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=79.05 E-value=6.6 Score=35.25 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=60.8
Q ss_pred ChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh
Q 029491 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH 68 (192)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~ 68 (192)
....|..++.+|...+|+.+..++.+|......|+.-+|.=.+-|+|.-..-.+-|.-++...+..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999888899999999988865
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.90 E-value=12 Score=34.38 Aligned_cols=80 Identities=11% Similarity=-0.065 Sum_probs=57.4
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
..++..++.++.+..+++.......+.++. .|+++.|...+++.-.-.+..+.+..-+|-+++.+|+.++|...|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr-~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMALG-TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHHHH-CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345566666655555555445555556664 5999999888877655555677788899999999999999999888876
Q ss_pred h
Q 029491 84 S 84 (192)
Q Consensus 84 ~ 84 (192)
.
T Consensus 347 ~ 347 (618)
T 1qsa_A 347 Q 347 (618)
T ss_dssp T
T ss_pred c
Confidence 4
No 247
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.95 E-value=68 Score=30.76 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc------------------cCC
Q 029491 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW------------------SSC 89 (192)
Q Consensus 28 laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~------------------p~~ 89 (192)
+...|...|+++- ++.-+..-|.+++.-.-+|.++...|++++|...++++.-.- |..
T Consensus 816 l~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 5566778888874 455778899999999999999999999999999999876211 111
Q ss_pred CCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 90 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 90 ~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
...+..+++-|....+-..| .|+-++.....+|..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~-a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEES-AYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Confidence 11112345567776666666 788888888888865
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=69.38 E-value=31 Score=26.63 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=33.4
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 029491 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 33 ~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
.++|+++.|.+.++.. ++..-|..+|..-..+|+++=|...|.++-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4677777777776654 667777777777777777777777776654
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=66.97 E-value=42 Score=25.91 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 029491 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (192)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~ 80 (192)
.|+.+.|.+.+... ++...+..+|-.-...|+++-|+.+++++=.. ..+.-.+.-.|+.+.=....+
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHHHH
Confidence 48888888887655 67888899999999999999999999986332 344555666777754444434
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHH
Q 029491 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121 (192)
Q Consensus 81 ~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~ 121 (192)
.+... .+. ...+| +++.+| ++++++.+|.+
T Consensus 85 iA~~~-g~~------n~af~---~~l~lG-dv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTR-EDF------GSMLL---NTFYNN-STKERSSIFAE 114 (177)
T ss_dssp HHHHT-TCH------HHHHH---HHHHHT-CHHHHHHHHHH
T ss_pred HHHHC-ccH------HHHHH---HHHHcC-CHHHHHHHHHH
Confidence 44322 111 11112 245668 89999999855
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=66.87 E-value=46 Score=32.97 Aligned_cols=83 Identities=8% Similarity=-0.020 Sum_probs=66.5
Q ss_pred CChHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCH-HH
Q 029491 2 GRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCF-KE 74 (192)
Q Consensus 2 G~~~~al~~~~ral~~----~p~~~~~~~~laf~L~e~g~~~eAe~~~rrALa--L~P~da~A~h~lahvl~~~Gr~-~e 74 (192)
|+.++|...+.+.-.. ..-+...++.+=.++...|++++|.+++++-.+ +.| |...+.++-+.+...|+. ++
T Consensus 141 G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~~~e~ 219 (1134)
T 3spa_A 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQDAGT 219 (1134)
T ss_dssp TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCcHHH
Confidence 7888888887553221 234667888888899999999999999998765 456 678999999999999984 78
Q ss_pred HHHHHHHhHhh
Q 029491 75 AVQFMEECSST 85 (192)
Q Consensus 75 ai~~~~~a~~~ 85 (192)
|...+++....
T Consensus 220 A~~Ll~EM~~k 230 (1134)
T 3spa_A 220 IERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88999988865
No 251
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.05 E-value=8.7 Score=25.99 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
.+.|.....+|++.+ ..|+++||+..|.++++.
T Consensus 16 ~~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKAD---------------KEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHH
Confidence 456777777776664 678888888888888865
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.87 E-value=34 Score=31.44 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlA 102 (192)
.....+|..+...+...++.....++....+ +......++-.-...|+.+++..++++.-...... + ...+| +|
T Consensus 253 ~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~-~--r~~YW--~~ 326 (618)
T 1qsa_A 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK-D--EWRYW--QA 326 (618)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS-H--HHHHH--HH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc-H--hHHHH--HH
Confidence 4445555555556644555555555554333 33333333333446799999999998765532221 1 44566 88
Q ss_pred HHHHhCCCCHHHHHHHHHHhhh
Q 029491 103 LCYLEGHSPMRKVLEIYDNHIW 124 (192)
Q Consensus 103 l~~l~~G~~~deAl~~yd~~i~ 124 (192)
.++..+| +.++|..+|.+...
T Consensus 327 ra~~~~g-~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 327 DLLLERG-REAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHHcC-CHHHHHHHHHHHhc
Confidence 8888888 89999999987665
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.11 E-value=1e+02 Score=30.03 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhc--------------------
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW-------------------- 86 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~-------------------- 86 (192)
.+...|...|+++-+.+ -+...|.+++.-.-+|.++...|++++|...++++...-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445777888876544 456789999999999999999999999999999874211
Q ss_pred cCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhhh
Q 029491 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (192)
Q Consensus 87 p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~~ 126 (192)
+... ...+++-|....+-..| .++.+++.-..+|...
T Consensus 893 ~~~~--~l~~YY~hv~~LFe~~~-~~~~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 893 HHQN--LLSCYYLHLSKKLFEES-AYIDALEFSLLADASK 929 (1139)
T ss_dssp TSCC--SSHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHC
T ss_pred cccc--cHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 1111 12345667765555666 8999999988888763
No 254
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.26 E-value=10 Score=25.47 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
.+.|.....+|++.+ ..|+++||+..|.++++.
T Consensus 8 ~~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKAD---------------KEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHH
Confidence 346777888887664 679999999999988865
No 255
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.21 E-value=52 Score=31.59 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029491 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL 49 (192)
Q Consensus 11 ~~ral~~~p~~~~~~~~laf~L~e~g~~~eAe~~~rrAL 49 (192)
++..++..|.++..-.++|.++.++|++++|...+++|-
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455677788888888999999999999999999999875
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.76 E-value=57 Score=28.01 Aligned_cols=102 Identities=9% Similarity=-0.063 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCC-cchhhhH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNW 98 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d---a~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~-~~~~h~~ 98 (192)
.++..+|--+.+.|++++|.+.+.+........ ......+--+....+++..+...+.++.......+. -....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456678888999999999999999998876544 356666677788899999999999999866544322 0122333
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 99 WHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 99 WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
--.|++++..+ +|.+|-..|-.....
T Consensus 212 ~~~gl~~l~~r-~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVR-NFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hHHHHHHHHHHHhcc
Confidence 33678888898 899999999776655
No 257
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.85 E-value=19 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGL 49 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrAL 49 (192)
+..+.-.|-.+...|+|++|+++.++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555666667777777777776655543
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.44 E-value=25 Score=30.37 Aligned_cols=68 Identities=10% Similarity=-0.176 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhCCCCHHHHHHHHHHhhhh
Q 029491 55 DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (192)
Q Consensus 55 da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~G~~~deAl~~yd~~i~~ 125 (192)
-..++..+|..+...|+.++|+..+.+....-..... .....|+.--..+..+ ++..+...+.++-..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~--kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA--KIDVMLTIARLGFFYN-DQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS--HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 3457899999999999999999999998876555433 4567888888888888 899999999887554
No 259
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=49.06 E-value=19 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
++.|...+.+|+.. ...|+++||+..|..+++.
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHHH
Confidence 45677777777644 4678999999998888865
No 260
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=48.13 E-value=8.3 Score=23.79 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred CcccchhchHHHHHHHHhh-ccCCCC
Q 029491 152 GELDVFGNRLKVLADCVAD-QVSIPS 176 (192)
Q Consensus 152 g~~~~~~~rw~~l~~~~~~-~~~~~~ 176 (192)
|++ +||.|.+.|...|.. +.+.|+
T Consensus 29 ghd-dvgqrlesllrrwnsrradaps 53 (60)
T 1pzq_A 29 GHD-DVGQRLESLLRRWNSRRADAPS 53 (60)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred ccc-HHHHHHHHHHHHHhhcccCCCc
Confidence 555 799999999999988 566554
No 261
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=46.56 E-value=24 Score=24.10 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
.+.|...+.+|++.+ ..|++++|+..|..+++.
T Consensus 12 l~~Ai~lv~~Ave~D---------------~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELD---------------AESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhCCHHHHHHHHHHHHHH
Confidence 456777777776654 668888888888888865
No 262
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.55 E-value=30 Score=22.92 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCC
Q 029491 28 LAFSLLELGQMSDAEEAAKKGLKINKH 54 (192)
Q Consensus 28 laf~L~e~g~~~eAe~~~rrALaL~P~ 54 (192)
+|-.|...|++++|..++-+|+...|+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344555566666666666666665544
No 263
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=44.45 E-value=28 Score=23.11 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 38 ~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
.+.|.....+|+.. ...|++++|+..|..+++.
T Consensus 10 l~~A~~l~~~Av~~---------------D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 10 LTKGIELVQKAIDL---------------DTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHH
Confidence 45677777777644 4678888888888888865
No 264
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=44.22 E-value=34 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 029491 61 ALCHVLQHDCCFKEAVQFMEECS 83 (192)
Q Consensus 61 ~lahvl~~~Gr~~eai~~~~~a~ 83 (192)
-.+-.+...|+++|||...+++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445556666666666555554
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=43.64 E-value=1.1e+02 Score=23.39 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 31 ~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+..+|.-|+=++..+.-+.=+|-+|.-+..+|.+|...|...++-+.+.+|-.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 678888888888888887777777888888999999999998888888887764
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.51 E-value=32 Score=22.76 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 60 HALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 60 h~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
..+|-.+..+|+.++|+..+-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788888999999999988888888776
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.14 E-value=93 Score=22.28 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred HHHHcC--CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC
Q 029491 31 SLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (192)
Q Consensus 31 ~L~e~g--~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~ 108 (192)
+|+-+| +++||...++ -|+..|+.--+.--...-+--+|++++|..+.+..- ||+. ..| +|++--.+
T Consensus 14 AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdl------epw--~ALce~rl 82 (116)
T 2p58_C 14 ALIGTGNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDL------EPW--LALCEYRL 82 (116)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGG------HHH--HHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchH------HHH--HHHHHHhc
Confidence 455555 8889988765 467777733344455666778999999999877554 5442 244 78888778
Q ss_pred CCCHHHHHHHH
Q 029491 109 HSPMRKVLEIY 119 (192)
Q Consensus 109 G~~~deAl~~y 119 (192)
| --+++....
T Consensus 83 G-l~s~le~rL 92 (116)
T 2p58_C 83 G-LGSALESRL 92 (116)
T ss_dssp T-CHHHHHHHH
T ss_pred c-cHHHHHHHH
Confidence 7 666655544
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.93 E-value=36 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q 029491 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (192)
Q Consensus 21 ~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~ 52 (192)
.+.++--.|..|+..|++.+|.++++++++-+
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34556666777888888888888888888755
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=39.92 E-value=1.6e+02 Score=24.47 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAAK 46 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~r 46 (192)
++|..|.++|-.+.+.|++.+|+.++-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 566777777777777777776666553
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=36.36 E-value=1.2e+02 Score=21.73 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHcC--CHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhccCCCCcchhhhHHHHHHHHHhC
Q 029491 31 SLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (192)
Q Consensus 31 ~L~e~g--~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~~p~~~~~~~~h~~WhlAl~~l~~ 108 (192)
+|+-+| +++||...++ -|+..|+.--+.--...-+--+|++++|..+.+..- ||+ ...| +|++--.+
T Consensus 13 AL~gTG~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pd------lepw--~ALce~rl 81 (115)
T 2uwj_G 13 ALAGSGQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP--WPA------LEPW--FALCEWHL 81 (115)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGG------GHHH--HHHHHHHT
T ss_pred HHHHccchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--Cch------HHHH--HHHHHHhc
Confidence 555555 8889988765 467777733344455666778999999998876544 444 2244 88888888
Q ss_pred CCCHHHHHHHH
Q 029491 109 HSPMRKVLEIY 119 (192)
Q Consensus 109 G~~~deAl~~y 119 (192)
| --+++....
T Consensus 82 G-l~s~le~rL 91 (115)
T 2uwj_G 82 G-LGAALDRRL 91 (115)
T ss_dssp T-CHHHHHHHH
T ss_pred c-cHHHHHHHH
Confidence 8 666665554
No 271
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=35.72 E-value=29 Score=31.97 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=41.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHH
Q 029491 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (192)
Q Consensus 28 laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai 76 (192)
.|-.....|+|.-|.+.....+..+|+|..|..-++.+++..|...|..
T Consensus 455 ~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~ 503 (658)
T 2cfu_A 455 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA 503 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccCh
Confidence 3445567899999999999999999999999999999998888666543
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.68 E-value=51 Score=25.10 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~ 52 (192)
+.++-..|..++..|++.+|.++++++++-+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444555556666666666666666666654
No 273
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.29 E-value=50 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhccC
Q 029491 61 ALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (192)
Q Consensus 61 ~lahvl~~~Gr~~eai~~~~~a~~~~p~ 88 (192)
.+|-.+..+|.+++|+.++-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566666777777777766666665554
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.28 E-value=56 Score=25.81 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~ 52 (192)
+.++--.|..|+..|++.+|.++++++++-+
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444455556666666666666666666644
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.56 E-value=58 Score=26.10 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrALaL~ 52 (192)
+.++--.|..|+..|++.+|.++++++++-+
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444555666666777777777777777654
No 276
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.44 E-value=1.7e+02 Score=21.99 Aligned_cols=60 Identities=7% Similarity=-0.070 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCC--------HHHH-HHHHHHHHhcCCHHHHHHHHHHhHhhc
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHD--------CWSQ-HALCHVLQHDCCFKEAVQFMEECSSTW 86 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~d--------a~A~-h~lahvl~~~Gr~~eai~~~~~a~~~~ 86 (192)
..+..|-..|+|=+|-++.+..-.-.|.. .-.+ .++|.++...|+.+-|...+++++..-
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44556778899999999999999887776 4455 667778888999999999999998643
No 277
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.96 E-value=75 Score=21.29 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=11.3
Q ss_pred hcCCHHHHHHHHHHhHhh
Q 029491 68 HDCCFKEAVQFMEECSST 85 (192)
Q Consensus 68 ~~Gr~~eai~~~~~a~~~ 85 (192)
..|+++||+..|.++++.
T Consensus 28 ~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 28 SESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 556666666666666654
No 278
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.91 E-value=50 Score=22.98 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 029491 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (192)
Q Consensus 27 ~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~ 84 (192)
.+|-.|...|++++|..++-+||.+.| ++.+=+..|++.++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~-----------------qP~~LL~i~q~TlP 65 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG-----------------QPQQLLQVLQQTLP 65 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS-----------------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHhhCC
Confidence 456678888999999998888888774 56777778887774
No 279
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=29.75 E-value=1.6e+02 Score=26.16 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcc-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 19 QQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKI-----NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~--~~eAe~~~rrALaL-----~P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
..+|++++++|-.-+-.-. ...+.+.+.+|+.. +-....-+.-+|..++..+++.||+..+..+.+-
T Consensus 259 ~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 3578888888875433222 22266677777764 3456677777788888888988888877776643
No 280
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=29.10 E-value=89 Score=21.29 Aligned_cols=33 Identities=12% Similarity=-0.054 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHh
Q 029491 36 GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH 68 (192)
Q Consensus 36 g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~ 68 (192)
+..-++...+..+|+-+|.||-.+..+=+.+.+
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~e 56 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLAEYQSKLSE 56 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356678888999999999999888777666644
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.91 E-value=1.3e+02 Score=23.24 Aligned_cols=39 Identities=8% Similarity=-0.095 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCHHHHHH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da~A~h~ 61 (192)
..+..+|-...-.++|.+|++...+|+...|.+....-.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~ 53 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKR 53 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHH
Confidence 456677777889999999999999999999987654433
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.48 E-value=1e+02 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCH
Q 029491 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (192)
Q Consensus 23 ~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~da 56 (192)
-++..+|-...-.++|.+|.+....|+...|.+.
T Consensus 271 rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 271 RYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4445556666666777777777777776666554
No 283
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.81 E-value=86 Score=20.60 Aligned_cols=28 Identities=25% Similarity=0.095 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491 24 IFGILAFSLLELGQMSDAEEAAKKGLKI 51 (192)
Q Consensus 24 ~~~~laf~L~e~g~~~eAe~~~rrALaL 51 (192)
-+...|.-.-..|+|++|...+..|+++
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566677889999999998888764
No 284
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.21 E-value=79 Score=21.04 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLK 50 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALa 50 (192)
+...|.-.-..|+|++|...+..|++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455667788999998888877765
No 285
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.97 E-value=85 Score=22.34 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKI 51 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL 51 (192)
+...|.-.-..|+|++|...|..|+++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555667889999999998887663
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.92 E-value=3.2e+02 Score=24.56 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHhhcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--HH---H--HHHHHHHHHhcCCHHHHHHHH
Q 029491 9 DIIHQVLP-YNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CW---S--QHALCHVLQHDCCFKEAVQFM 79 (192)
Q Consensus 9 ~~~~ral~-~~p~-~~~~~~~laf~L~e~g~~~eAe~~~rrALaL~P~d--a~---A--~h~lahvl~~~Gr~~eai~~~ 79 (192)
...+-|.- ++++ .+..++.+=--+.+.+.|+.|+....++- .|.. .. + ..-+|.+...++++.+|...+
T Consensus 216 ~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 216 KFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444333 4443 35666777678889999999999999985 4432 12 2 234699999999999999999
Q ss_pred HHhHhhccCC
Q 029491 80 EECSSTWSSC 89 (192)
Q Consensus 80 ~~a~~~~p~~ 89 (192)
..|++.-|..
T Consensus 294 ~~A~rkap~~ 303 (523)
T 4b4t_S 294 IAAIRKAPHN 303 (523)
T ss_dssp HHHTSSCSCS
T ss_pred HHHHHhCCcc
Confidence 9999887764
No 287
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=24.71 E-value=1.1e+02 Score=21.05 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhc
Q 029491 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD 69 (192)
Q Consensus 35 ~g~~~eAe~~~rrALaL~P~da~A~h~lahvl~~~ 69 (192)
.+.+..+...+..+|+.+|+||-.+..+-+.+..=
T Consensus 29 a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lsey 63 (92)
T 2g0u_A 29 VKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEY 63 (92)
T ss_dssp THHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34667788889999999999999888777766543
No 288
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.70 E-value=84 Score=22.64 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHhccc
Q 029491 37 QMSDAEEAAKKGLKIN 52 (192)
Q Consensus 37 ~~~eAe~~~rrALaL~ 52 (192)
.|++|.....+||.++
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4566666666666665
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.22 E-value=3.2e+02 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 029491 20 QEDFIFGILAFSLLELGQMSDAEEAA 45 (192)
Q Consensus 20 ~~~~~~~~laf~L~e~g~~~eAe~~~ 45 (192)
+||..|.++|-.+.+.+++.+|+.++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66777777777777777777776665
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.31 E-value=94 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 029491 25 FGILAFSLLELGQMSDAEEAAKKGLKI 51 (192)
Q Consensus 25 ~~~laf~L~e~g~~~eAe~~~rrALaL 51 (192)
+...|.-....|+|++|...+..|+++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445566677888999988887776653
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.30 E-value=55 Score=21.85 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=32.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhhhhhCCCCCCChHHHHHHHHHHHHhhhcCcccchhchHHHHHHHHhh
Q 029491 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVAD 170 (192)
Q Consensus 101 lAl~~l~~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~g~~~~~~~rw~~l~~~~~~ 170 (192)
+|-=+-..| +||.|+..|+..+..- ... |-.+ + +.....+|+.+-..+.+
T Consensus 18 ~ARe~Al~G-nYdta~~yY~g~~~qI---------~k~------l~~~---~-d~~~r~kW~~~~~ei~~ 67 (78)
T 2rpa_A 18 LAREYALLG-NYDSAMVYYQGVLDQM---------NKY------LYSV---K-DTHLRQKWQQVWQEINV 67 (78)
T ss_dssp HHHHHHHHT-CCHHHHHHHHHHHHHH---------HHH------HHTC---S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHH---------HHH------HHhc---C-CHHHHHhHHHHHHHHHH
Confidence 555555568 9999999999988762 111 2111 1 21346789888877766
No 292
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.33 E-value=2.2e+02 Score=25.02 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhccc-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh
Q 029491 19 QQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKIN-----KHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (192)
Q Consensus 19 p~~~~~~~~laf~L~e~g~~--~eAe~~~rrALaL~-----P~da~A~h~lahvl~~~Gr~~eai~~~~~a~~~ 85 (192)
..+|.+++++|-.-+-.--. ..++..+.+|+... -.+.+-+.-+|-.++..+++.||+.....+..-
T Consensus 252 ~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 252 KTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 46788888888744332222 22777777777754 567888889999999999999998887766643
No 293
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.01 E-value=1.3e+02 Score=21.66 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029491 22 DFIFGILAFSLLELGQMSDAEEAAKKG 48 (192)
Q Consensus 22 ~~~~~~laf~L~e~g~~~eAe~~~rrA 48 (192)
++-+-..|....|.|+-++|...|+++
T Consensus 22 AF~~Is~AL~~DE~g~k~~Al~lYk~G 48 (116)
T 2dl1_A 22 AFLFVNKGLNTDELGQKEEAKNYYKQG 48 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 345556666667777777777776643
Done!