Your job contains 1 sequence.
>029494
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG
LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE
GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQS
LGMPQGLSEGLK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029494
(192 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061471 - symbol:AT2G24020 "AT2G24020" species... 595 6.6e-58 1
TAIR|locus:2118721 - symbol:AT4G30620 "AT4G30620" species... 593 1.1e-57 1
UNIPROTKB|Q9KT50 - symbol:VC_1055 "Nucleoid-associated pr... 130 1.2e-08 1
TIGR_CMR|VC_1055 - symbol:VC_1055 "conserved hypothetical... 130 1.2e-08 1
UNIPROTKB|P0A8B5 - symbol:ybaB species:83333 "Escherichia... 123 6.8e-08 1
UNIPROTKB|Q609A8 - symbol:MCA1327 "Nucleoid-associated pr... 118 2.3e-07 1
UNIPROTKB|Q47XR0 - symbol:CPS_3743 "Nucleoid-associated p... 113 7.8e-07 1
TIGR_CMR|CPS_3743 - symbol:CPS_3743 "conserved hypothetic... 113 7.8e-07 1
UNIPROTKB|Q8EFF9 - symbol:SO_2014 "Nucleoid-associated pr... 112 1.0e-06 1
TIGR_CMR|SO_2014 - symbol:SO_2014 "conserved hypothetical... 112 1.0e-06 1
UNIPROTKB|Q48KQ5 - symbol:PSPPH_1786 "Nucleoid-associated... 108 2.6e-06 1
UNIPROTKB|Q87YZ4 - symbol:PSPTO_3645 "Nucleoid-associated... 108 2.6e-06 1
UNIPROTKB|Q81W17 - symbol:BAS0022 "Nucleoid-associated pr... 105 5.6e-06 1
TIGR_CMR|BA_0020 - symbol:BA_0020 "conserved hypothetical... 105 5.6e-06 1
UNIPROTKB|Q4KFF9 - symbol:PFL_1905 "Nucleoid-associated p... 102 1.3e-05 1
UNIPROTKB|Q0C592 - symbol:HNE_0371 "Nucleoid-associated p... 97 5.2e-05 1
UNIPROTKB|Q3A8S1 - symbol:CHY_2674 "Nucleoid-associated p... 94 0.00012 1
TIGR_CMR|CHY_2674 - symbol:CHY_2674 "conserved hypothetic... 94 0.00012 1
UNIPROTKB|P67266 - symbol:SP_1102 "Nucleoid-associated pr... 91 0.00027 1
UNIPROTKB|Q83DP1 - symbol:CBU_0656 "Nucleoid-associated p... 91 0.00027 1
TIGR_CMR|CBU_0656 - symbol:CBU_0656 "conserved hypothetic... 91 0.00027 1
UNIPROTKB|Q5LMJ3 - symbol:SPO3570 "Nucleoid-associated pr... 88 0.00060 1
TIGR_CMR|SPO_3570 - symbol:SPO_3570 "conserved hypothetic... 88 0.00060 1
UNIPROTKB|Q71W68 - symbol:LMOf2365_2683 "Nucleoid-associa... 87 0.00079 1
>TAIR|locus:2061471 [details] [associations]
symbol:AT2G24020 "AT2G24020" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009941 GO:GO:0009535 EMBL:AC005170 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
TIGRFAMs:TIGR00103 EMBL:AY048234 EMBL:AY091702 IPI:IPI00520224
PIR:F84631 RefSeq:NP_565561.1 UniGene:At.25545 HSSP:P17577
ProteinModelPortal:O82230 SMR:O82230 IntAct:O82230 STRING:O82230
PaxDb:O82230 PRIDE:O82230 ProMEX:O82230 EnsemblPlants:AT2G24020.1
GeneID:816936 KEGG:ath:AT2G24020 TAIR:At2g24020
HOGENOM:HOG000293241 InParanoid:O82230 OMA:GNQQPVR PhylomeDB:O82230
ProtClustDB:CLSN2915951 ArrayExpress:O82230 Genevestigator:O82230
Uniprot:O82230
Length = 182
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 122/152 (80%), Positives = 134/152 (88%)
Query: 42 SFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQ 100
++ Q KS + +RSLRV GLFGG KDNN +D SKAGI GNMQN+YETVKKAQMVVQ
Sbjct: 33 TWPKQYKSKNGYRSLRVNGLFGGGNKDNNS--EDGQSKAGIFGNMQNMYETVKKAQMVVQ 90
Query: 101 VEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK 160
VEAVRVQKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAMELG+EKLS LVTEAYK
Sbjct: 91 VEAVRVQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYK 150
Query: 161 DAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK 192
DAH KSV+AMKERMSDLAQSLGMP GLSEG+K
Sbjct: 151 DAHAKSVVAMKERMSDLAQSLGMPPGLSEGMK 182
>TAIR|locus:2118721 [details] [associations]
symbol:AT4G30620 "AT4G30620" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] GO:GO:0009570 EMBL:CP002687 GO:GO:0009941
EMBL:AL161577 Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575
SUPFAM:SSF82607 UniGene:At.31819 UniGene:At.4582 HSSP:P17577
ProtClustDB:CLSN2915951 EMBL:AY074869 EMBL:BT020301 EMBL:BT025534
IPI:IPI00533495 PIR:C85358 RefSeq:NP_194791.1
ProteinModelPortal:Q9M098 SMR:Q9M098 STRING:Q9M098 PRIDE:Q9M098
EnsemblPlants:AT4G30620.1 GeneID:829185 KEGG:ath:AT4G30620
TAIR:At4g30620 InParanoid:Q9M098 OMA:LAMKERM PhylomeDB:Q9M098
ArrayExpress:Q9M098 Genevestigator:Q9M098 Uniprot:Q9M098
Length = 180
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 123/158 (77%), Positives = 140/158 (88%)
Query: 36 AGKEMLSFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKK 94
+ ++ + + ++++SG+ RSLRV GLFGG KKDN E G SKAGILGNMQNLYETVKK
Sbjct: 27 SSRQNIVWLNRKQSGNNNRSLRVNGLFGGGKKDNKEDGQ---SKAGILGNMQNLYETVKK 83
Query: 95 AQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLL 154
AQMVVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAMELG+EKLSLL
Sbjct: 84 AQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLL 143
Query: 155 VTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK 192
VTEAYKDAH KSVLAMKERMSDLAQSLGMP GL +GLK
Sbjct: 144 VTEAYKDAHSKSVLAMKERMSDLAQSLGMPPGL-DGLK 180
>UNIPROTKB|Q9KT50 [details] [associations]
symbol:VC_1055 "Nucleoid-associated protein VC_1055"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009295
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 KO:K09747 OMA:MQDKMAK ProtClustDB:PRK00153
PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 PIR:A82247 RefSeq:NP_230700.1
ProteinModelPortal:Q9KT50 SMR:Q9KT50 PRIDE:Q9KT50 DNASU:2614325
GeneID:2614325 KEGG:vch:VC1055 PATRIC:20081208 Uniprot:Q9KT50
Length = 109
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQ + Q ++Q+E+A E G L+KVT++G+ R I E+
Sbjct: 5 GGMGNL---MKQAQQM-QERMQKLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDES 60
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
ME E L L+ A+ DA ++ KE+M+ + + +P G+
Sbjct: 61 LMEDDKEMLEDLIAAAFNDAARRIEETQKEKMASITGGMQLPPGM 105
>TIGR_CMR|VC_1055 [details] [associations]
symbol:VC_1055 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00274
GO:GO:0005737 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0009295 Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575
SUPFAM:SSF82607 eggNOG:COG0718 KO:K09747 OMA:MQDKMAK
ProtClustDB:PRK00153 PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
PIR:A82247 RefSeq:NP_230700.1 ProteinModelPortal:Q9KT50 SMR:Q9KT50
PRIDE:Q9KT50 DNASU:2614325 GeneID:2614325 KEGG:vch:VC1055
PATRIC:20081208 Uniprot:Q9KT50
Length = 109
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQ + Q ++Q+E+A E G L+KVT++G+ R I E+
Sbjct: 5 GGMGNL---MKQAQQM-QERMQKLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDES 60
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
ME E L L+ A+ DA ++ KE+M+ + + +P G+
Sbjct: 61 LMEDDKEMLEDLIAAAFNDAARRIEETQKEKMASITGGMQLPPGM 105
>UNIPROTKB|P0A8B5 [details] [associations]
symbol:ybaB species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0009295 "nucleoid"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006950
"response to stress" evidence=IEP] HAMAP:MF_00274 GO:GO:0005737
GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 EMBL:X04487 EMBL:M38777
GO:GO:0009295 Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575
SUPFAM:SSF82607 EMBL:X15761 eggNOG:COG0718 KO:K09747 OMA:MQDKMAK
ProtClustDB:PRK00153 PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 PIR:A30371 RefSeq:NP_415004.1
RefSeq:YP_488762.1 PDB:1PUG PDBsum:1PUG ProteinModelPortal:P0A8B5
SMR:P0A8B5 DIP:DIP-48059N IntAct:P0A8B5 MINT:MINT-1219994
PaxDb:P0A8B5 PRIDE:P0A8B5 EnsemblBacteria:EBESCT00000000729
EnsemblBacteria:EBESCT00000016903 GeneID:12932973 GeneID:945104
KEGG:ecj:Y75_p0458 KEGG:eco:b0471 PATRIC:32116099 EchoBASE:EB1092
EcoGene:EG11100 BioCyc:EcoCyc:EG11100-MONOMER
BioCyc:ECOL316407:JW0460-MONOMER EvolutionaryTrace:P0A8B5
Genevestigator:P0A8B5 Uniprot:P0A8B5
Length = 109
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G + NL +K+AQ + Q + ++Q+E+A E G L+KVT++G R EI +
Sbjct: 5 GGLGNL---MKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPS 60
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQG 186
+E E L LV A+ DA ++ KE+M+ ++ + +P G
Sbjct: 61 LLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPG 104
>UNIPROTKB|Q609A8 [details] [associations]
symbol:MCA1327 "Nucleoid-associated protein MCA1327"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:AE017282
GenomeReviews:AE017282_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 OMA:MQDKMAK PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
RefSeq:YP_113789.1 HSSP:P44711 ProteinModelPortal:Q609A8 SMR:Q609A8
GeneID:3104404 KEGG:mca:MCA1327 PATRIC:22606490
HOGENOM:HOG000293239 Uniprot:Q609A8
Length = 107
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/104 (26%), Positives = 54/104 (51%)
Query: 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
+ NL + ++ Q Q + Q+E+AA E G L+K+ ++G ++ ++ EI +
Sbjct: 5 LANLMQQAQRFQETFQ----KTQEEIAATEIQAESGGGLVKIRMNGKREVLKVEIDPSLR 60
Query: 145 ELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLS 188
+ E L L+ A+ D ++ +E+M+ L SLG+P G +
Sbjct: 61 QEEHEVLEDLIAAAFNDGVRRVAKLKQEKMAGLTGSLGIPPGFN 104
>UNIPROTKB|Q47XR0 [details] [associations]
symbol:CPS_3743 "Nucleoid-associated protein CPS_3743"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 OMA:MQDKMAK PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 RefSeq:YP_270410.1 ProteinModelPortal:Q47XR0
SMR:Q47XR0 STRING:Q47XR0 GeneID:3521686 KEGG:cps:CPS_3743
PATRIC:21470405 BioCyc:CPSY167879:GI48-3765-MONOMER Uniprot:Q47XR0
Length = 108
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQ + Q + + Q+ELA E G ++KVT++G+ + E+ ++
Sbjct: 4 GGMGNL---MKQAQQM-QAKMAKAQEELAQMEVVGEAGAGMVKVTMTGSHSVRKVELDDS 59
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
ME + + L+ A DA ++ K++M L + +P G+
Sbjct: 60 LMEDDKDMIEDLLAAAVNDAVRRVEEQNKDKMGALTGGMQLPPGM 104
>TIGR_CMR|CPS_3743 [details] [associations]
symbol:CPS_3743 "conserved hypothetical protein TIGR00103"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 OMA:MQDKMAK PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 RefSeq:YP_270410.1 ProteinModelPortal:Q47XR0
SMR:Q47XR0 STRING:Q47XR0 GeneID:3521686 KEGG:cps:CPS_3743
PATRIC:21470405 BioCyc:CPSY167879:GI48-3765-MONOMER Uniprot:Q47XR0
Length = 108
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQ + Q + + Q+ELA E G ++KVT++G+ + E+ ++
Sbjct: 4 GGMGNL---MKQAQQM-QAKMAKAQEELAQMEVVGEAGAGMVKVTMTGSHSVRKVELDDS 59
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
ME + + L+ A DA ++ K++M L + +P G+
Sbjct: 60 LMEDDKDMIEDLLAAAVNDAVRRVEEQNKDKMGALTGGMQLPPGM 104
>UNIPROTKB|Q8EFF9 [details] [associations]
symbol:SO_2014 "Nucleoid-associated protein SO_2014"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 OMA:MQDKMAK ProtClustDB:PRK00153 PIRSF:PIRSF004555
TIGRFAMs:TIGR00103 HOGENOM:HOG000293239 RefSeq:NP_717620.1
ProteinModelPortal:Q8EFF9 SMR:Q8EFF9 GeneID:1169766
KEGG:son:SO_2014 PATRIC:23523649 Uniprot:Q8EFF9
Length = 109
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q ++Q+E+A E G L+KVT++G + EI +
Sbjct: 5 GGMGNL---MKQAQMM-QERMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIYPS 60
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
ME E L L+ A DA + K +M+++ + +P G+
Sbjct: 61 LMEDDKEMLEDLIAAACNDAARIIEENQKAKMAEVTGGMQLPPGM 105
>TIGR_CMR|SO_2014 [details] [associations]
symbol:SO_2014 "conserved hypothetical protein TIGR00103"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 OMA:MQDKMAK ProtClustDB:PRK00153 PIRSF:PIRSF004555
TIGRFAMs:TIGR00103 HOGENOM:HOG000293239 RefSeq:NP_717620.1
ProteinModelPortal:Q8EFF9 SMR:Q8EFF9 GeneID:1169766
KEGG:son:SO_2014 PATRIC:23523649 Uniprot:Q8EFF9
Length = 109
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q ++Q+E+A E G L+KVT++G + EI +
Sbjct: 5 GGMGNL---MKQAQMM-QERMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIYPS 60
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
ME E L L+ A DA + K +M+++ + +P G+
Sbjct: 61 LMEDDKEMLEDLIAAACNDAARIIEENQKAKMAEVTGGMQLPPGM 105
>UNIPROTKB|Q48KQ5 [details] [associations]
symbol:PSPPH_1786 "Nucleoid-associated protein PSPPH_1786"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0009295
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 KO:K09747 OMA:MQDKMAK ProtClustDB:PRK00153
PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 HOGENOM:HOG000293239
RefSeq:YP_274020.1 ProteinModelPortal:Q48KQ5 SMR:Q48KQ5
STRING:Q48KQ5 GeneID:3559195 KEGG:psp:PSPPH_1786 PATRIC:19972759
Uniprot:Q48KQ5
Length = 108
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/105 (27%), Positives = 53/105 (50%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M L +K+AQ + Q + ++Q+ELA AE G L+ V ++G R + ++
Sbjct: 4 GGMAGL---MKQAQQM-QEKMAKMQEELANAEVTGQSGAGLVSVVMTGRHDVKRINLDDS 59
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
M+ E L L+ A DA +K A +++ + + + +P G+
Sbjct: 60 LMQEDKEVLEDLIAAAVNDAVRKIEQASQDKTASMTAGMQLPPGM 104
>UNIPROTKB|Q87YZ4 [details] [associations]
symbol:PSPTO_3645 "Nucleoid-associated protein PSPTO_3645"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677
EMBL:AE016853 GenomeReviews:AE016853_GR GO:GO:0009295
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 KO:K09747 OMA:MQDKMAK ProtClustDB:PRK00153
PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 HOGENOM:HOG000293239
RefSeq:NP_793420.1 ProteinModelPortal:Q87YZ4 SMR:Q87YZ4
GeneID:1185310 KEGG:pst:PSPTO_3645 PATRIC:19998727
BioCyc:PSYR223283:GJIX-3700-MONOMER Uniprot:Q87YZ4
Length = 108
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/105 (27%), Positives = 53/105 (50%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M L +K+AQ + Q + ++Q+ELA AE G L+ V ++G R + ++
Sbjct: 4 GGMAGL---MKQAQQM-QEKMAKMQEELANAEVTGQSGAGLVSVVMTGRHDVKRINLDDS 59
Query: 143 AMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
M+ E L L+ A DA +K A +++ + + + +P G+
Sbjct: 60 LMQEDKEVLEDLIAAAVNDAVRKIEQASQDKTASMTAGMQLPPGM 104
>UNIPROTKB|Q81W17 [details] [associations]
symbol:BAS0022 "Nucleoid-associated protein
BA_0020/GBAA_0020/BAS0022" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00274 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0009295 Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575
SUPFAM:SSF82607 RefSeq:NP_842591.1 RefSeq:YP_016624.1
RefSeq:YP_026310.1 ProteinModelPortal:Q81W17 SMR:Q81W17
EnsemblBacteria:EBBACT00000009036 EnsemblBacteria:EBBACT00000017468
EnsemblBacteria:EBBACT00000021763 GeneID:1088875 GeneID:2814313
GeneID:2851653 KEGG:ban:BA_0020 KEGG:bar:GBAA_0020 KEGG:bat:BAS0022
eggNOG:COG0718 HOGENOM:HOG000293240 KO:K09747 OMA:MQDKMAK
ProtClustDB:PRK00153 BioCyc:BANT260799:GJAJ-25-MONOMER
BioCyc:BANT261594:GJ7F-26-MONOMER PIRSF:PIRSF004555
TIGRFAMs:TIGR00103 Uniprot:Q81W17
Length = 109
Score = 105 (42.0 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 80 GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
G +GNM N+ + ++K +Q E + Q+EL +G G +I V +G++Q + ++
Sbjct: 4 GGMGNMNNMMKQMQK----MQKEMAKAQEELGEKTVEGTAGGGMITVIANGHKQILEVKV 59
Query: 140 TEAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
E ++ E L LV A DA +K+ M + L +P G+
Sbjct: 60 KEEVVDPEDIEMLQDLVLAATNDALKKADELSNSTMGKFTKGLNLPGGM 108
>TIGR_CMR|BA_0020 [details] [associations]
symbol:BA_0020 "conserved hypothetical protein TIGR00103"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0009295
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
RefSeq:NP_842591.1 RefSeq:YP_016624.1 RefSeq:YP_026310.1
ProteinModelPortal:Q81W17 SMR:Q81W17
EnsemblBacteria:EBBACT00000009036 EnsemblBacteria:EBBACT00000017468
EnsemblBacteria:EBBACT00000021763 GeneID:1088875 GeneID:2814313
GeneID:2851653 KEGG:ban:BA_0020 KEGG:bar:GBAA_0020 KEGG:bat:BAS0022
eggNOG:COG0718 HOGENOM:HOG000293240 KO:K09747 OMA:MQDKMAK
ProtClustDB:PRK00153 BioCyc:BANT260799:GJAJ-25-MONOMER
BioCyc:BANT261594:GJ7F-26-MONOMER PIRSF:PIRSF004555
TIGRFAMs:TIGR00103 Uniprot:Q81W17
Length = 109
Score = 105 (42.0 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 80 GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
G +GNM N+ + ++K +Q E + Q+EL +G G +I V +G++Q + ++
Sbjct: 4 GGMGNMNNMMKQMQK----MQKEMAKAQEELGEKTVEGTAGGGMITVIANGHKQILEVKV 59
Query: 140 TEAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
E ++ E L LV A DA +K+ M + L +P G+
Sbjct: 60 KEEVVDPEDIEMLQDLVLAATNDALKKADELSNSTMGKFTKGLNLPGGM 108
>UNIPROTKB|Q4KFF9 [details] [associations]
symbol:PFL_1905 "Nucleoid-associated protein PFL_1905"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 OMA:MQDKMAK ProtClustDB:PRK00153 PIRSF:PIRSF004555
TIGRFAMs:TIGR00103 HSSP:P44711 HOGENOM:HOG000293239
RefSeq:YP_259024.1 ProteinModelPortal:Q4KFF9 SMR:Q4KFF9
STRING:Q4KFF9 World-2DPAGE:0008:Q4KFF9 GeneID:3476627
KEGG:pfl:PFL_1905 PATRIC:19873049
BioCyc:PFLU220664:GIX8-1915-MONOMER Uniprot:Q4KFF9
Length = 111
Score = 102 (41.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT-- 140
G M L +K+AQ + Q + ++Q+ELA AE G G+++ V ++G R I
Sbjct: 3 GGMAGL---MKQAQQM-QEKMAKMQEELANAEVTGKAGGDMVTVVMTGRHDIKRVSIDPS 58
Query: 141 --EAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
E E E L L A DA +K +E+MS + + +P G+
Sbjct: 59 LLEGVSEDDREVLEDLFAAAVNDAVRKIESNSQEKMSGMTAGMQLPPGM 107
>UNIPROTKB|Q0C592 [details] [associations]
symbol:HNE_0371 "Nucleoid-associated protein HNE_0371"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 HOGENOM:HOG000293239
RefSeq:YP_759101.1 ProteinModelPortal:Q0C592 STRING:Q0C592
GeneID:4288143 KEGG:hne:HNE_0371 PATRIC:32213534 OMA:FGDMMKQ
ProtClustDB:CLSK2531698 BioCyc:HNEP228405:GI69-415-MONOMER
Uniprot:Q0C592
Length = 107
Score = 97 (39.2 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 28/108 (25%), Positives = 53/108 (49%)
Query: 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
M++L + +++AQ +Q + VQ+++ E DG L++V L G + + I ++ M
Sbjct: 1 MKDLAQIMQQAQ-AMQAKMAEVQQKIENTEADGVAGAGLVRVKLRGKGELISVTIDKSLM 59
Query: 145 ELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEGLK 192
E + L+ A+ DA ++ AM++ M G G+ G K
Sbjct: 60 GDDPEIVEDLIKAAHSDARKRLDQAMEDAMKTATAGFG---GMLPGFK 104
>UNIPROTKB|Q3A8S1 [details] [associations]
symbol:CHY_2674 "Nucleoid-associated protein CHY_2674"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0043590
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 HOGENOM:HOG000293240 KO:K09747 OMA:MQDKMAK
PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 RefSeq:YP_361463.1
ProteinModelPortal:Q3A8S1 STRING:Q3A8S1 GeneID:3728694
KEGG:chy:CHY_2674 PATRIC:21278369
BioCyc:CHYD246194:GJCN-2673-MONOMER Uniprot:Q3A8S1
Length = 109
Score = 94 (38.1 bits), Expect = 0.00012, P = 0.00012
Identities = 26/104 (25%), Positives = 53/104 (50%)
Query: 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT 140
+ GNM N+ + +K+ Q + Q + ++Q+ L + G ++K ++G Q+ V I
Sbjct: 1 MFGNMGNMQKMLKQVQKMQQ-DMAKLQEGLNEKTVEATSGGGMVKAVVNGKQELVSLTIN 59
Query: 141 EAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 183
A++ E L+ ++T A +A +KS + E M+ + L +
Sbjct: 60 PQAVDPEDVEMLADMITAAVNEALRKSKDMVAEEMNKITGGLNL 103
>TIGR_CMR|CHY_2674 [details] [associations]
symbol:CHY_2674 "conserved hypothetical protein TIGR00103"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0043590
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 HOGENOM:HOG000293240 KO:K09747 OMA:MQDKMAK
PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 RefSeq:YP_361463.1
ProteinModelPortal:Q3A8S1 STRING:Q3A8S1 GeneID:3728694
KEGG:chy:CHY_2674 PATRIC:21278369
BioCyc:CHYD246194:GJCN-2673-MONOMER Uniprot:Q3A8S1
Length = 109
Score = 94 (38.1 bits), Expect = 0.00012, P = 0.00012
Identities = 26/104 (25%), Positives = 53/104 (50%)
Query: 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT 140
+ GNM N+ + +K+ Q + Q + ++Q+ L + G ++K ++G Q+ V I
Sbjct: 1 MFGNMGNMQKMLKQVQKMQQ-DMAKLQEGLNEKTVEATSGGGMVKAVVNGKQELVSLTIN 59
Query: 141 EAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 183
A++ E L+ ++T A +A +KS + E M+ + L +
Sbjct: 60 PQAVDPEDVEMLADMITAAVNEALRKSKDMVAEEMNKITGGLNL 103
>UNIPROTKB|P67266 [details] [associations]
symbol:SP_1102 "Nucleoid-associated protein SP_1102"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00274 GO:GO:0005737
GO:GO:0003677 EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0009295
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 HOGENOM:HOG000293240 KO:K09747 ProtClustDB:PRK00153
PIRSF:PIRSF004555 TIGRFAMs:TIGR00103 PIR:D95127 RefSeq:NP_345573.1
ProteinModelPortal:P67266 EnsemblBacteria:EBSTRT00000026881
GeneID:931616 KEGG:spn:SP_1102 PATRIC:19706615 OMA:KYTKGLM
Uniprot:P67266
Length = 99
Score = 91 (37.1 bits), Expect = 0.00027, P = 0.00027
Identities = 29/99 (29%), Positives = 51/99 (51%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
NMQN+ +K Q Q+E + Q ELAA +F G +L++ TL+G+++ V + A
Sbjct: 3 NMQNMMRQAQKLQK--QME--QSQAELAAMQFVGKSAQDLVQATLTGDKKVVSIDFNPAV 58
Query: 144 MEL-GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSL 181
++ E LS + +A A ++ K+++ A L
Sbjct: 59 VDPEDLETLSDMTVQAINSALEQIDETTKKKLGAFAGKL 97
>UNIPROTKB|Q83DP1 [details] [associations]
symbol:CBU_0656 "Nucleoid-associated protein CBU_0656"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 ProtClustDB:PRK00153 PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 OMA:FGDMMKQ RefSeq:NP_819686.1
ProteinModelPortal:Q83DP1 PRIDE:Q83DP1 GeneID:1208541
KEGG:cbu:CBU_0656 PATRIC:17929989
BioCyc:CBUR227377:GJ7S-650-MONOMER Uniprot:Q83DP1
Length = 110
Score = 91 (37.1 bits), Expect = 0.00027, P = 0.00027
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
N+ +L + KK Q ++Q + Q ELA G ++K+T++ + V + +
Sbjct: 7 NLGSLMKNAKKIQEMMQ----KAQDELAKIRVTGESGAGMVKLTMTAQHEVVEMNLDDEL 62
Query: 144 MELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLG 182
++ E + L+ A DA+QK + +E+M G
Sbjct: 63 LKESKEVIEDLIKAALNDANQKILKITQEKMMSAGSLFG 101
>TIGR_CMR|CBU_0656 [details] [associations]
symbol:CBU_0656 "conserved hypothetical protein TIGR00103"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 GO:GO:0003677 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009295 Gene3D:3.30.1310.10
InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607 eggNOG:COG0718
KO:K09747 ProtClustDB:PRK00153 PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 OMA:FGDMMKQ RefSeq:NP_819686.1
ProteinModelPortal:Q83DP1 PRIDE:Q83DP1 GeneID:1208541
KEGG:cbu:CBU_0656 PATRIC:17929989
BioCyc:CBUR227377:GJ7S-650-MONOMER Uniprot:Q83DP1
Length = 110
Score = 91 (37.1 bits), Expect = 0.00027, P = 0.00027
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
N+ +L + KK Q ++Q + Q ELA G ++K+T++ + V + +
Sbjct: 7 NLGSLMKNAKKIQEMMQ----KAQDELAKIRVTGESGAGMVKLTMTAQHEVVEMNLDDEL 62
Query: 144 MELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLG 182
++ E + L+ A DA+QK + +E+M G
Sbjct: 63 LKESKEVIEDLIKAALNDANQKILKITQEKMMSAGSLFG 101
>UNIPROTKB|Q5LMJ3 [details] [associations]
symbol:SPO3570 "Nucleoid-associated protein SPO3570"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0043590
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
KO:K09747 OMA:MQDKMAK PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 RefSeq:YP_168765.1 ProteinModelPortal:Q5LMJ3
GeneID:3195408 KEGG:sil:SPO3570 PATRIC:23380615
ProtClustDB:CLSK934212 Uniprot:Q5LMJ3
Length = 114
Score = 88 (36.0 bits), Expect = 0.00060, P = 0.00060
Identities = 26/108 (24%), Positives = 55/108 (50%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG + ++ + +K AQ + Q + ++Q++L + G L+K T + + +I
Sbjct: 5 LGGLGDMAKMMKSAQEL-QTKMAQMQEDLNSVLVTGESGAGLVKATATAKGELKGLDIDP 63
Query: 142 AAMELGAEK--LSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
+ G +K + L+ A KDA K+ +E M+ L +++G+P+ +
Sbjct: 64 SIFN-GDDKEVVEDLILAAIKDAQAKAAEKAQEEMAALTEAMGLPKDI 110
>TIGR_CMR|SPO_3570 [details] [associations]
symbol:SPO_3570 "conserved hypothetical protein TIGR00103"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00274 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0043590
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
KO:K09747 OMA:MQDKMAK PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
HOGENOM:HOG000293239 RefSeq:YP_168765.1 ProteinModelPortal:Q5LMJ3
GeneID:3195408 KEGG:sil:SPO3570 PATRIC:23380615
ProtClustDB:CLSK934212 Uniprot:Q5LMJ3
Length = 114
Score = 88 (36.0 bits), Expect = 0.00060, P = 0.00060
Identities = 26/108 (24%), Positives = 55/108 (50%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG + ++ + +K AQ + Q + ++Q++L + G L+K T + + +I
Sbjct: 5 LGGLGDMAKMMKSAQEL-QTKMAQMQEDLNSVLVTGESGAGLVKATATAKGELKGLDIDP 63
Query: 142 AAMELGAEK--LSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187
+ G +K + L+ A KDA K+ +E M+ L +++G+P+ +
Sbjct: 64 SIFN-GDDKEVVEDLILAAIKDAQAKAAEKAQEEMAALTEAMGLPKDI 110
>UNIPROTKB|Q71W68 [details] [associations]
symbol:LMOf2365_2683 "Nucleoid-associated protein
LMOf2365_2683" species:265669 "Listeria monocytogenes serotype 4b
str. F2365" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00274 GO:GO:0005737
GO:GO:0003677 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0009295
Gene3D:3.30.1310.10 InterPro:IPR004401 Pfam:PF02575 SUPFAM:SSF82607
eggNOG:COG0718 HOGENOM:HOG000293240 KO:K09747 OMA:MQDKMAK
ProtClustDB:PRK00153 PIRSF:PIRSF004555 TIGRFAMs:TIGR00103
RefSeq:YP_015271.1 ProteinModelPortal:Q71W68 STRING:Q71W68
GeneID:2797275 KEGG:lmf:LMOf2365_2683 PATRIC:20326753
Uniprot:Q71W68
Length = 105
Score = 87 (35.7 bits), Expect = 0.00079, P = 0.00079
Identities = 28/104 (26%), Positives = 46/104 (44%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
+GNMQ + + ++K +Q E + Q +L A EF G G ++ V +G + I E
Sbjct: 4 MGNMQGMMKQMQK----MQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINE 59
Query: 142 AAMEL-GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 184
++ E L LV A D ++ + M Q L +P
Sbjct: 60 EVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIP 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.126 0.338 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 177 0.00084 109 3 11 23 0.48 32
31 0.50 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 581 (62 KB)
Total size of DFA: 134 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.73u 0.11s 16.84t Elapsed: 00:00:01
Total cpu time: 16.73u 0.11s 16.84t Elapsed: 00:00:01
Start: Fri May 10 23:22:48 2013 End: Fri May 10 23:22:49 2013