Query 029494
Match_columns 192
No_of_seqs 173 out of 1025
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14624 hypothetical protein; 100.0 8E-34 1.7E-38 221.8 13.8 106 81-188 1-107 (115)
2 PRK14625 hypothetical protein; 100.0 2.3E-32 4.9E-37 211.9 14.5 101 83-188 2-105 (109)
3 PRK14622 hypothetical protein; 100.0 2.6E-32 5.7E-37 209.4 14.5 100 84-188 2-102 (103)
4 PRK14621 hypothetical protein; 100.0 7.3E-32 1.6E-36 209.6 13.2 100 83-187 4-103 (111)
5 PRK14626 hypothetical protein; 100.0 1.7E-31 3.7E-36 207.1 14.7 104 84-189 3-108 (110)
6 PRK00153 hypothetical protein; 100.0 2.6E-31 5.7E-36 202.8 14.6 102 81-187 1-103 (104)
7 PRK14628 hypothetical protein; 100.0 3.4E-31 7.3E-36 207.8 15.3 102 84-187 16-117 (118)
8 PRK14623 hypothetical protein; 100.0 4E-31 8.7E-36 204.0 14.2 101 84-190 2-104 (106)
9 COG0718 Uncharacterized protei 100.0 4.1E-31 8.8E-36 203.7 13.8 100 83-188 5-105 (105)
10 PRK14627 hypothetical protein; 100.0 5.8E-30 1.2E-34 195.5 14.1 95 84-182 2-97 (100)
11 TIGR00103 DNA_YbaB_EbfC DNA-bi 100.0 5.3E-30 1.2E-34 195.9 13.8 98 83-187 5-102 (102)
12 PRK03762 hypothetical protein; 100.0 2.7E-29 6E-34 193.0 13.6 94 84-182 6-99 (103)
13 PRK00587 hypothetical protein; 100.0 2E-28 4.3E-33 187.1 13.7 96 84-187 2-98 (99)
14 PRK14629 hypothetical protein; 99.9 6.1E-27 1.3E-31 178.9 12.9 89 89-181 6-95 (99)
15 PF02575 YbaB_DNA_bd: YbaB/Ebf 99.9 6.6E-26 1.4E-30 167.8 13.4 92 92-184 1-93 (93)
16 PF10921 DUF2710: Protein of u 96.7 0.028 6.1E-07 43.5 10.2 78 93-173 25-103 (109)
17 PRK14624 hypothetical protein; 96.3 0.025 5.3E-07 44.7 7.7 96 82-183 5-108 (115)
18 PRK03762 hypothetical protein; 96.3 0.045 9.8E-07 42.3 8.9 92 82-183 7-103 (103)
19 PRK14626 hypothetical protein; 95.9 0.077 1.7E-06 41.4 8.8 96 81-182 3-107 (110)
20 TIGR00103 DNA_YbaB_EbfC DNA-bi 95.5 0.072 1.6E-06 40.8 7.1 37 100-140 11-47 (102)
21 COG0718 Uncharacterized protei 95.2 0.21 4.7E-06 38.9 9.0 87 100-192 11-105 (105)
22 PRK00153 hypothetical protein; 94.5 0.16 3.5E-06 38.6 6.5 84 99-188 8-99 (104)
23 PRK14628 hypothetical protein; 94.2 0.76 1.6E-05 36.4 10.0 57 113-177 56-112 (118)
24 PRK14627 hypothetical protein; 93.9 0.28 6.1E-06 37.6 6.8 83 100-188 7-97 (100)
25 PF10904 DUF2694: Protein of u 93.4 0.41 8.8E-06 37.1 6.9 64 113-176 6-69 (101)
26 PRK14625 hypothetical protein; 93.4 0.35 7.6E-06 37.8 6.7 88 92-188 15-108 (109)
27 PRK14623 hypothetical protein; 93.1 0.31 6.6E-06 37.9 6.0 82 92-182 14-102 (106)
28 PRK14621 hypothetical protein; 93.1 0.21 4.6E-06 39.0 5.1 86 81-178 9-98 (111)
29 PF02575 YbaB_DNA_bd: YbaB/Ebf 91.2 1 2.2E-05 33.0 6.5 78 93-177 9-90 (93)
30 PRK14622 hypothetical protein; 91.1 1.2 2.5E-05 34.4 7.0 83 100-188 7-97 (103)
31 PRK00587 hypothetical protein; 86.4 4.8 0.0001 30.9 7.4 80 93-179 15-97 (99)
32 PF10437 Lip_prot_lig_C: Bacte 83.0 4.3 9.3E-05 29.3 5.6 43 114-156 8-52 (86)
33 PF13103 TonB_2: TonB C termin 81.0 4.9 0.00011 28.3 5.2 36 122-160 28-63 (85)
34 TIGR01352 tonB_Cterm TonB fami 63.6 16 0.00034 24.6 4.2 35 123-160 13-47 (74)
35 PF14014 DUF4230: Protein of u 62.9 71 0.0015 24.9 8.6 66 115-181 62-147 (157)
36 PRK10819 transport protein Ton 58.5 23 0.00049 31.1 5.3 43 114-162 178-220 (246)
37 PF03544 TonB_C: Gram-negative 57.0 22 0.00048 24.2 4.1 42 112-159 11-52 (79)
38 COG2968 Uncharacterized conser 54.3 52 0.0011 29.2 6.8 63 111-177 111-189 (243)
39 TIGR01966 RNasePH ribonuclease 52.2 64 0.0014 27.5 6.9 44 120-163 182-225 (236)
40 COG0858 RbfA Ribosome-binding 50.6 1.2E+02 0.0026 23.7 8.4 75 92-173 8-83 (118)
41 PRK14629 hypothetical protein; 49.8 51 0.0011 25.3 5.3 77 87-169 7-90 (99)
42 PF04993 TfoX_N: TfoX N-termin 43.2 24 0.00053 25.9 2.6 48 108-164 50-97 (97)
43 PF15047 DUF4533: Protein of u 43.2 30 0.00065 30.5 3.5 27 83-109 51-77 (225)
44 PF11576 DUF3236: Protein of u 42.6 61 0.0013 27.0 5.0 47 119-166 105-151 (154)
45 PRK00173 rph ribonuclease PH; 41.1 1.4E+02 0.0029 25.5 7.3 43 120-162 183-225 (238)
46 PRK11087 oxidative stress defe 37.3 1.4E+02 0.003 25.6 6.7 25 149-173 148-172 (231)
47 TIGR00545 lipoyltrans lipoyltr 36.1 1.7E+02 0.0037 26.5 7.4 40 116-155 252-293 (324)
48 PF13600 DUF4140: N-terminal d 35.9 1.1E+02 0.0025 22.4 5.3 27 119-145 35-61 (104)
49 PF07830 PP2C_C: Protein serin 33.0 27 0.00058 26.0 1.4 48 138-186 12-65 (81)
50 PF05504 Spore_GerAC: Spore ge 32.5 1.4E+02 0.003 23.5 5.6 47 125-171 71-118 (171)
51 COG0810 TonB Periplasmic prote 32.3 71 0.0015 27.4 4.2 39 122-163 182-220 (244)
52 COG0052 RpsB Ribosomal protein 31.8 2.5E+02 0.0053 25.2 7.5 91 76-168 95-225 (252)
53 PF11419 DUF3194: Protein of u 31.6 1.4E+02 0.003 22.7 5.0 59 106-168 26-85 (87)
54 PF09957 DUF2191: Uncharacteri 29.0 54 0.0012 21.7 2.2 33 135-167 3-40 (47)
55 cd03081 TRX_Fd_NuoE_FDH_gamma 28.7 1.7E+02 0.0037 20.7 5.1 52 103-156 21-78 (80)
56 PF15482 CCER1: Coiled-coil do 28.5 1.5E+02 0.0032 25.7 5.3 51 52-112 161-211 (214)
57 PRK05988 formate dehydrogenase 28.0 1.5E+02 0.0033 24.1 5.2 52 104-157 96-153 (156)
58 PF04205 FMN_bind: FMN-binding 27.7 65 0.0014 22.3 2.7 19 123-141 7-25 (81)
59 KOG3675 Dipeptidyl peptidase I 26.5 46 0.001 31.6 2.1 52 105-156 265-317 (417)
60 PF08285 DPM3: Dolichol-phosph 26.4 57 0.0012 24.6 2.3 22 93-115 68-89 (91)
61 PF14395 COOH-NH2_lig: Phage p 26.2 50 0.0011 29.7 2.2 68 116-190 31-99 (261)
62 PF09415 CENP-X: CENP-S associ 26.1 82 0.0018 22.7 2.9 34 136-169 17-50 (72)
63 PF07472 PA-IIL: Fucose-bindin 25.1 91 0.002 24.5 3.2 24 117-140 50-73 (107)
64 PF04402 SIMPL: Protein of unk 25.0 2.2E+02 0.0049 22.7 5.7 22 152-173 127-148 (210)
65 PF01491 Frataxin_Cyay: Fratax 25.0 2.5E+02 0.0055 21.4 5.7 64 100-163 11-102 (109)
66 TIGR02832 spo_yunB sporulation 24.7 2.4E+02 0.0053 24.2 6.1 49 116-168 59-107 (204)
67 PRK03822 lplA lipoate-protein 24.7 3.7E+02 0.0081 24.6 7.6 52 115-166 256-315 (338)
68 PF02482 Ribosomal_S30AE: Sigm 24.3 2.6E+02 0.0057 19.7 8.5 66 99-175 19-92 (97)
69 PF03725 RNase_PH_C: 3' exorib 24.2 2E+02 0.0043 19.2 4.5 41 119-159 26-66 (68)
70 COG4572 ChaB Putative cation t 23.9 1E+02 0.0022 22.8 3.1 19 147-165 17-35 (76)
71 PLN02412 probable glutathione 23.2 1.3E+02 0.0028 24.0 4.0 35 124-162 133-167 (167)
72 COG5618 Predicted periplasmic 22.4 1E+02 0.0022 26.6 3.2 27 118-144 103-129 (206)
73 cd00503 Frataxin Frataxin is a 22.2 3.5E+02 0.0075 20.7 5.9 34 101-134 12-49 (105)
74 TIGR03422 mito_frataxin fratax 21.7 1E+02 0.0023 23.4 2.9 34 101-134 15-48 (97)
75 PF13670 PepSY_2: Peptidase pr 21.7 3E+02 0.0065 19.4 6.4 23 121-143 53-76 (83)
76 PF06305 DUF1049: Protein of u 21.7 1.2E+02 0.0026 20.4 3.0 24 89-113 44-67 (68)
77 PRK00446 cyaY frataxin-like pr 21.4 3.7E+02 0.0079 20.6 5.9 31 103-133 14-47 (105)
78 PRK13710 plasmid maintenance p 20.8 95 0.0021 22.5 2.4 14 133-146 3-16 (72)
79 KOG1614 Exosomal 3'-5' exoribo 20.8 3.9E+02 0.0085 24.3 6.7 39 119-158 216-254 (291)
80 PF07369 DUF1488: Protein of u 20.7 2.2E+02 0.0049 20.1 4.4 58 119-176 12-72 (83)
81 cd04766 HTH_HspR Helix-Turn-He 20.6 1.7E+02 0.0037 21.0 3.8 27 84-111 63-89 (91)
No 1
>PRK14624 hypothetical protein; Provisional
Probab=100.00 E-value=8e-34 Score=221.84 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=102.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHH
Q 029494 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAY 159 (192)
Q Consensus 81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAv 159 (192)
||.+|++|.+++||||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+
T Consensus 1 ~~~~~~nm~~~mkqAq~-mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aAv 79 (115)
T PRK14624 1 MFDKIKNMSEALSNMGN-IREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFDADDNKMLEDLVMAAT 79 (115)
T ss_pred CcchHHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHH
Confidence 67788888899999999 899999999999999999999999999999999999999999999986 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 029494 160 KDAHQKSVLAMKERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 160 NdA~~Ka~e~~~e~m~~ltGGl~lP~Gl~ 188 (192)
|+|++++++..+++|++++|||+|| ||+
T Consensus 80 NdA~~k~~e~~~e~m~~~tgGm~lP-Gl~ 107 (115)
T PRK14624 80 NDALKKAKEATAYEFQNASGGLDFS-EIS 107 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC-chH
Confidence 9999999999999999999999999 864
No 2
>PRK14625 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=211.91 Aligned_cols=101 Identities=29% Similarity=0.377 Sum_probs=95.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHH
Q 029494 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKD 161 (192)
Q Consensus 83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNd 161 (192)
+||++|+ +|||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+
T Consensus 2 ~nm~~mm---kqaq~-mQ~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~aA~Nd 77 (109)
T PRK14625 2 KDLGGLM---KQAQA-MQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIVAAHAD 77 (109)
T ss_pred ccHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCccHHHHHHHHHHHHHH
Confidence 4666665 88888 799999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCC--CCCCCC
Q 029494 162 AHQKSVLAMKERMSDLAQSLG--MPQGLS 188 (192)
Q Consensus 162 A~~Ka~e~~~e~m~~ltGGl~--lP~Gl~ 188 (192)
|++++++..+++|++++|||+ || ||.
T Consensus 78 A~~k~~~~~~~~m~~~tgg~~~~lP-G~~ 105 (109)
T PRK14625 78 AKKKLDAKQAQLMQEAAGPMAGLMG-GLP 105 (109)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-CCC
Confidence 999999999999999999998 88 885
No 3
>PRK14622 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=209.41 Aligned_cols=100 Identities=25% Similarity=0.376 Sum_probs=95.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA 162 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA 162 (192)
||++|+ +|||+ ||++|+++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|||+|
T Consensus 2 ~~~~lm---kqaq~-mQ~~m~~~q~el~~~~v~g~sggG~VkV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~aA~N~A 77 (103)
T PRK14622 2 DIQYLM---RQAKK-LEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVTAAVNAA 77 (103)
T ss_pred CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCceEEEEEECHHHcCcccHHHHHHHHHHHHHHH
Confidence 566666 78888 799999999999999999999999999999999999999999999986 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCC
Q 029494 163 HQKSVLAMKERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl~ 188 (192)
++++++..+++|++++|||+|| ||.
T Consensus 78 ~~k~~~~~~~~m~~~tgg~~lP-G~~ 102 (103)
T PRK14622 78 VEKARTAADESMSKATGGIKIP-GIA 102 (103)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-CCC
Confidence 9999999999999999999999 885
No 4
>PRK14621 hypothetical protein; Provisional
Probab=99.98 E-value=7.3e-32 Score=209.57 Aligned_cols=100 Identities=24% Similarity=0.321 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
+||++|+ +|||+ ||++|+++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|||+|
T Consensus 4 ~nm~~mm---kqaq~-mQ~km~~~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~lld-D~e~LeDLI~aA~NdA 78 (111)
T PRK14621 4 PNLGDMM---KQIQQ-AGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIMD-DVEMVQDLVVAAVNSA 78 (111)
T ss_pred hhHHHHH---HHHHH-HHHHHHHHHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHHHHHHHH
Confidence 4566665 88888 79999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494 163 HQKSVLAMKERMSDLAQSLGMPQGL 187 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl 187 (192)
++++++..+++|++++|||++|+.|
T Consensus 79 ~~ka~~~~~e~m~~~tgGm~~p~~~ 103 (111)
T PRK14621 79 LEESAKLAQEEISKVAGGMMNPADI 103 (111)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 9999999999999999999999534
No 5
>PRK14626 hypothetical protein; Provisional
Probab=99.98 E-value=1.7e-31 Score=207.14 Aligned_cols=104 Identities=24% Similarity=0.290 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA 162 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA 162 (192)
+|.+|.++++|||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+|
T Consensus 3 ~~gn~~~mmkqaq~-mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A 81 (110)
T PRK14626 3 NFGNLAELMKQMQS-IKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEA 81 (110)
T ss_pred CcHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHH
Confidence 34445555688888 799999999999999999999999999999999999999999999986 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcC-CCCCCCCCC
Q 029494 163 HQKSVLAMKERMSDLAQS-LGMPQGLSE 189 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGG-l~lP~Gl~~ 189 (192)
++++++..+++|++++|+ +++| |+++
T Consensus 82 ~~k~~~~~~e~m~~~tg~p~~~p-~~~~ 108 (110)
T PRK14626 82 SRRSKEVMGEKMTQAAGLPSNIS-KFGG 108 (110)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-CCCC
Confidence 999999999999999987 6777 8754
No 6
>PRK00153 hypothetical protein; Validated
Probab=99.97 E-value=2.6e-31 Score=202.78 Aligned_cols=102 Identities=38% Similarity=0.542 Sum_probs=95.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHH
Q 029494 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAY 159 (192)
Q Consensus 81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAv 159 (192)
||+||++|+ ++||+ ||++++++|++|++++|+|+|+||+|+||+||+|+|++|+|||+++++ |+|.|+|+|++|+
T Consensus 1 ~~~~~~~m~---~qaq~-~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~~A~ 76 (104)
T PRK00153 1 GMGNMQNLM---KQAQQ-MQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLILAAF 76 (104)
T ss_pred CcccHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHH
Confidence 356777776 77777 799999999999999999999999999999999999999999999975 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494 160 KDAHQKSVLAMKERMSDLAQSLGMPQGL 187 (192)
Q Consensus 160 NdA~~Ka~e~~~e~m~~ltGGl~lP~Gl 187 (192)
|+|++++++.++++|.+++|||++| ||
T Consensus 77 n~A~~~~~~~~~e~m~~~~gg~~~p-gl 103 (104)
T PRK00153 77 NDALRKAEETMKEKMGKLTGGLLPP-GF 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC-CC
Confidence 9999999999999999999999887 87
No 7
>PRK14628 hypothetical protein; Provisional
Probab=99.97 E-value=3.4e-31 Score=207.84 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
+|++|+++++++|+.||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|||+|+
T Consensus 16 ~~~~lm~q~~k~qq~mq~k~~elqe~l~~~~v~g~sggG~VkV~~nG~~ei~~I~Idp~~l~-D~E~LeDLIiaA~NdA~ 94 (118)
T PRK14628 16 KQEKLLKDFAKMQEELQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLKE-DFETLKDLLIAGMNEVM 94 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHceEEEEEecCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHHHHHHHHH
Confidence 46676776666666689999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCC
Q 029494 164 QKSVLAMKERMSDLAQSLGMPQGL 187 (192)
Q Consensus 164 ~Ka~e~~~e~m~~ltGGl~lP~Gl 187 (192)
+++++..+++|+++++||+|| |+
T Consensus 95 ~ka~~~~~~~m~~~tggm~lP-Gl 117 (118)
T PRK14628 95 EKIEKRREEEMSKITQQFGIP-GL 117 (118)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-CC
Confidence 999999999999999999999 64
No 8
>PRK14623 hypothetical protein; Provisional
Probab=99.97 E-value=4e-31 Score=204.05 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=93.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
||++|+ ++||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|+|+|+
T Consensus 2 ~~~~~m---kqaqk-mQ~km~~~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Idp~~l~-D~E~LeDLI~aAvn~A~ 76 (106)
T PRK14623 2 DMMGMM---GKLKE-AQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELLE-DKEQLEDYLVLTLNKAI 76 (106)
T ss_pred CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCccEEEEEECHHHcC-CHHHHHHHHHHHHHHHH
Confidence 566666 77777 79999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHhhh-cCCC-CCCCCCCC
Q 029494 164 QKSVLAMKERMSDLA-QSLG-MPQGLSEG 190 (192)
Q Consensus 164 ~Ka~e~~~e~m~~lt-GGl~-lP~Gl~~g 190 (192)
+++++..+++|++++ +||+ +| ||+.=
T Consensus 77 ~k~~~~~~~~m~~~t~~g~~~~P-G~~~~ 104 (106)
T PRK14623 77 EKATEINEAELGAVAKEGMPDIP-GMDNM 104 (106)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC-Cchhh
Confidence 999999999999999 6997 66 98753
No 9
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.97 E-value=4.1e-31 Score=203.74 Aligned_cols=100 Identities=33% Similarity=0.470 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHH
Q 029494 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKD 161 (192)
Q Consensus 83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNd 161 (192)
+||+.|+ ++||+ ||++++++|+||++++|+|++++|+|+||++|+++|++|+|||+++++ |+|+|||||++|+||
T Consensus 5 ~~~~~l~---kqaqq-mQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~nd 80 (105)
T COG0718 5 MDMQKLM---KQAQQ-MQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFND 80 (105)
T ss_pred hhHHHHH---HHHHH-HHHHHHHHHHHHHhcEEeeecCCcEEEEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHHHHHHH
Confidence 3666666 77777 699999999999999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 029494 162 AHQKSVLAMKERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 162 A~~Ka~e~~~e~m~~ltGGl~lP~Gl~ 188 (192)
|.+++++..+++|+.+++||+ | ||+
T Consensus 81 A~~kv~e~~~e~m~~~t~gm~-P-G~~ 105 (105)
T COG0718 81 AKKKVEETRKEKMGALTGGMP-P-GFK 105 (105)
T ss_pred HHHHHHHHHHHHHHHhhccCC-C-CCC
Confidence 999999999999999999998 7 874
No 10
>PRK14627 hypothetical protein; Provisional
Probab=99.97 E-value=5.8e-30 Score=195.48 Aligned_cols=95 Identities=31% Similarity=0.379 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA 162 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA 162 (192)
||++|+ ++||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|||+|
T Consensus 2 n~~~~m---kqaq~-mQ~km~~~Q~el~~~~veg~sggG~VkV~~~G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A 77 (100)
T PRK14627 2 NQRQLM---QMAQQ-MQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPDDVEMLQDLLLVAINDA 77 (100)
T ss_pred CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEEcCCeEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHH
Confidence 777776 77777 799999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 029494 163 HQKSVLAMKERMSDLAQSLG 182 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGGl~ 182 (192)
++++++..+++|++++|||+
T Consensus 78 ~~k~~~~~~~~m~~~tgg~~ 97 (100)
T PRK14627 78 SRKAQQLAEERMQPLTGGLK 97 (100)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999863
No 11
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=99.97 E-value=5.3e-30 Score=195.87 Aligned_cols=98 Identities=34% Similarity=0.455 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
+||++|+ ++||+ ||++++++|+||++++|+|+|+||+|+||++|+++|++|+|||+++++|+|.|||+|++|+|+|
T Consensus 5 ~n~~~m~---kqaq~-mQ~k~~~~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~~~l~~d~e~LedlI~~A~N~A 80 (102)
T TIGR00103 5 GNLGELM---KQAQQ-MQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLEEDKEALEDMITEALNDA 80 (102)
T ss_pred hhHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECHHHHhCCHHHHHHHHHHHHHHH
Confidence 3555554 78888 7999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494 163 HQKSVLAMKERMSDLAQSLGMPQGL 187 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl 187 (192)
++++++.+++ .+++||++||||
T Consensus 81 ~~k~~~~~~e---~~t~gl~~~pGl 102 (102)
T TIGR00103 81 VKKVEETYKE---LMTSGMPLPPGL 102 (102)
T ss_pred HHHHHHHHHH---HHhCCCCCCCCC
Confidence 9999999999 888999996576
No 12
>PRK03762 hypothetical protein; Provisional
Probab=99.96 E-value=2.7e-29 Score=192.95 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
||++|+ +++|+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ |+|+|||||++|||+|+
T Consensus 6 ~~~~m~---kqaqk-mQ~km~~~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~ll~-D~e~LeDLI~aAiNdA~ 80 (103)
T PRK03762 6 DFSKLG---EMLEQ-MQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLLE-DKESLQILLISAINDVY 80 (103)
T ss_pred CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHHHHHHHHH
Confidence 677777 55666 69999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 029494 164 QKSVLAMKERMSDLAQSLG 182 (192)
Q Consensus 164 ~Ka~e~~~e~m~~ltGGl~ 182 (192)
+++++..+++|++++|||+
T Consensus 81 ~k~~~~~~~~m~~~tggm~ 99 (103)
T PRK03762 81 KMVEENKKNLALNMLGGFG 99 (103)
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 9999999999999999883
No 13
>PRK00587 hypothetical protein; Provisional
Probab=99.96 E-value=2e-28 Score=187.08 Aligned_cols=96 Identities=24% Similarity=0.272 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA 162 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA 162 (192)
||++|+ ++||+ ||++++++|++|++++|+|++ ||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+|
T Consensus 2 ~~~~lm---kqaqk-mQ~km~~~QeeL~~~~v~g~~-gGlVkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aA~NdA 76 (99)
T PRK00587 2 NFQKLA---QQLKK-MQNTMEKKQKEFEEKEFDFDY-KKYILIKIKGNLNIEKIEINKELIDPEDKETLQDMLREAINEA 76 (99)
T ss_pred CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEc-CCeEEEEEEcCccEEEEEECHHHcCCccHHHHHHHHHHHHHHH
Confidence 677776 77777 699999999999999999999 99999999999999999999999986 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494 163 HQKSVLAMKERMSDLAQSLGMPQGL 187 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGGl~lP~Gl 187 (192)
++++++..+++|.+++||+ | |+
T Consensus 77 ~~k~~e~~~e~m~~~~~~~--~-~~ 98 (99)
T PRK00587 77 ISITCKERDAIMNSTIPKG--T-GL 98 (99)
T ss_pred HHHHHHHHHHHHHHhcCCC--C-CC
Confidence 9999999999999999875 4 65
No 14
>PRK14629 hypothetical protein; Provisional
Probab=99.95 E-value=6.1e-27 Score=178.93 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHHH
Q 029494 89 YETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQKSV 167 (192)
Q Consensus 89 ~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~Ka~ 167 (192)
+++|+|||+ ||++++++|++|++++|+|++|||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|+|+++++
T Consensus 6 ~~~mkqaq~-mQ~km~~~Q~eL~~~~veg~aggGlVkV~~nG~~~v~~i~Idp~lld~eD~e~LeDLI~aAvNdA~~k~~ 84 (99)
T PRK14629 6 LDFLKNMSS-FKDNIDNIKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEEFFDDLDNEALEHMIKSAFNDAVSKVK 84 (99)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCCEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 455688888 799999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHhhhcCC
Q 029494 168 LAMKERMSDLAQSL 181 (192)
Q Consensus 168 e~~~e~m~~ltGGl 181 (192)
+. .+++++|+|
T Consensus 85 e~---~~~~~~~~~ 95 (99)
T PRK14629 85 EE---IKSKTMGSL 95 (99)
T ss_pred HH---HHHhhccCC
Confidence 97 344555654
No 15
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=99.94 E-value=6.6e-26 Score=167.77 Aligned_cols=92 Identities=37% Similarity=0.513 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCccccc-CCHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEKLSLLVTEAYKDAHQKSVLAM 170 (192)
Q Consensus 92 ~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~-~D~E~LedLI~aAvNdA~~Ka~e~~ 170 (192)
|+++|+ ||++++++|++|++++|+++|+||+|+|||||+|+|++|+|||++++ .|++.|+++|++|+|+|.+++.+.+
T Consensus 1 m~~~~~-~~~~~~~~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~~a~~~~ 79 (93)
T PF02575_consen 1 MKQAQE-MQEKMEEAQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIVEAVNDAQKKAREKA 79 (93)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888 79999999999999999999999999999999999999999999999 4999999999999999999999999
Q ss_pred HHHHHhhhcCCCCC
Q 029494 171 KERMSDLAQSLGMP 184 (192)
Q Consensus 171 ~e~m~~ltGGl~lP 184 (192)
++.|.+++|||+||
T Consensus 80 ~~~~~~~~g~~~~P 93 (93)
T PF02575_consen 80 QEEMAELTGGLGLP 93 (93)
T ss_dssp HHHHHHHHHTT-S-
T ss_pred HHHHHHHhcCCCCC
Confidence 99999999999998
No 16
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=96.73 E-value=0.028 Score=43.54 Aligned_cols=78 Identities=6% Similarity=0.044 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 93 KKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMK 171 (192)
Q Consensus 93 KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~Ka~e~~~ 171 (192)
+.+.+ ...+.+++-+|.+.++++. +.|-|..++|.+|+++++.+-|.++.. ..-.|.|.|--||..+...|+....
T Consensus 25 r~lse-aa~kweaLvaeae~itysv--dlGDv~avaNSdGrL~~LtLhpgv~t~YshgeLaerlN~ai~alr~eAeaen~ 101 (109)
T PF10921_consen 25 RELSE-AADKWEALVAEAETITYSV--DLGDVRAVANSDGRLLELTLHPGVMTGYSHGELAERLNTAITALREEAEAENR 101 (109)
T ss_pred HHHHH-HHHHHHHHHHHhhcceeec--cCCcEEEEecCCCcEEEEEeccchhcCcchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444 3678888888888888776 677799999999999999999999987 8889999999999888877766544
Q ss_pred HH
Q 029494 172 ER 173 (192)
Q Consensus 172 e~ 173 (192)
..
T Consensus 102 A~ 103 (109)
T PF10921_consen 102 AR 103 (109)
T ss_pred hh
Confidence 43
No 17
>PRK14624 hypothetical protein; Provisional
Probab=96.28 E-value=0.025 Score=44.65 Aligned_cols=96 Identities=10% Similarity=0.156 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHH
Q 029494 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAA-------AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLL 154 (192)
Q Consensus 82 ~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~-------~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedL 154 (192)
+.||++|+++++++|+.|++--+++.+.--. ++|+.+.....++|+++..- ++ .=|++.| .+.|-..
T Consensus 5 ~~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~l--ld-~eD~E~L---eDLI~aA 78 (115)
T PRK14624 5 IKNMSEALSNMGNIREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQL--FD-ADDNKML---EDLVMAA 78 (115)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHH--cC-cccHHHH---HHHHHHH
Confidence 4689999999999988777666666554322 66777777888999998742 10 0134445 3477889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-cCCCC
Q 029494 155 VTEAYKDAHQKSVLAMKERMSDLA-QSLGM 183 (192)
Q Consensus 155 I~aAvNdA~~Ka~e~~~e~m~~lt-GGl~l 183 (192)
|-+|+.++.+..++.+.+..+.+- .||.+
T Consensus 79 vNdA~~k~~e~~~e~m~~~tgGm~lPGl~~ 108 (115)
T PRK14624 79 TNDALKKAKEATAYEFQNASGGLDFSEISK 108 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCchHH
Confidence 999999999999999999887662 35544
No 18
>PRK03762 hypothetical protein; Provisional
Probab=96.26 E-value=0.045 Score=42.33 Aligned_cols=92 Identities=14% Similarity=0.264 Sum_probs=65.2
Q ss_pred cccHHHHHHHH-HHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHH
Q 029494 82 LGNMQNLYETV-KKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVT 156 (192)
Q Consensus 82 ~gnm~~L~~~~-KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~ 156 (192)
|++|..+++.| +++++ +|+++++..-+-. -++|+.......++|+++..-- + |++.++ +.|-..|-
T Consensus 7 ~~~m~kqaqkmQ~km~~-~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~ll----~-D~e~Le---DLI~aAiN 77 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQ-LEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLL----E-DKESLQ---ILLISAIN 77 (103)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHHHc----C-CHHHHH---HHHHHHHH
Confidence 56666666433 34444 4666654432222 3777778778889999988752 3 888884 47889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 029494 157 EAYKDAHQKSVLAMKERMSDLAQSLGM 183 (192)
Q Consensus 157 aAvNdA~~Ka~e~~~e~m~~ltGGl~l 183 (192)
+|+.++-+..++.+.+..+.+ +||++
T Consensus 78 dA~~k~~~~~~~~m~~~tggm-~~~~~ 103 (103)
T PRK03762 78 DVYKMVEENKKNLALNMLGGF-GGFGL 103 (103)
T ss_pred HHHHHHHHHHHHHHHHHhccc-CCCCC
Confidence 999999999999999998887 66764
No 19
>PRK14626 hypothetical protein; Provisional
Probab=95.91 E-value=0.077 Score=41.38 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHH
Q 029494 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKEL-------AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSL 153 (192)
Q Consensus 81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL-------~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~Led 153 (192)
+|+||++|+++++++|+.|++--+++...- ..++|+.+..+..++|+++..- ++ .=|++.| .+.|-.
T Consensus 3 ~~gn~~~mmkqaq~mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~l--l~-~ed~e~L---eDLI~a 76 (110)
T PRK14626 3 NFGNLAELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSL--LN-EDEYEVL---KDLLIA 76 (110)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHH--cC-cccHHHH---HHHHHH
Confidence 357999999999999887666666665554 3377888888889999998762 21 0123445 347789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhcCCC
Q 029494 154 LVTEAYKDAHQKSVLAMKERMSD--LAQSLG 182 (192)
Q Consensus 154 LI~aAvNdA~~Ka~e~~~e~m~~--ltGGl~ 182 (192)
.|-+|+.++-+.+++.+.+.+.- -.+||+
T Consensus 77 A~N~A~~k~~~~~~e~m~~~tg~p~~~p~~~ 107 (110)
T PRK14626 77 AFNEASRRSKEVMGEKMTQAAGLPSNISKFG 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999888764 234664
No 20
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=95.49 E-value=0.072 Score=40.76 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC
Q 029494 100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT 140 (192)
Q Consensus 100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id 140 (192)
-++++++|++++++.-+=.. .+|+....+-++.|.++
T Consensus 11 ~kqaq~mQ~k~~~~q~eL~~----~~v~g~sggGlV~V~~~ 47 (102)
T TIGR00103 11 MKQAQQMQEKMKKLQEEIAQ----FEVTGKSGAGLVTVTIN 47 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cEEEEEECCCEEEEEEE
Confidence 34444555555544433322 33444444444444443
No 21
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.21 Score=38.89 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC--ccccc-C-CHHHHH----HHHHHHHHHHHHHHHHHHH
Q 029494 100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT--EAAME-L-GAEKLS----LLVTEAYKDAHQKSVLAMK 171 (192)
Q Consensus 100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id--p~~l~-~-D~E~Le----dLI~aAvNdA~~Ka~e~~~ 171 (192)
-++++++|+++.++.-+-.. .+|+-+..+-++.|.|+ -++.+ . |++.|. +.+-.=+-.|+..|.+.++
T Consensus 11 ~kqaqqmQ~~~~~~Q~ela~----~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~ndA~~kv~ 86 (105)
T COG0718 11 MKQAQQMQKKMQKMQEELAQ----KEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFNDAKKKVE 86 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cEEeeecCCcEEEEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666665544332 45555666666666663 33333 2 666665 4566666677777777777
Q ss_pred HHHHhhhcCCCCCCCCCCCCC
Q 029494 172 ERMSDLAQSLGMPQGLSEGLK 192 (192)
Q Consensus 172 e~m~~ltGGl~lP~Gl~~g~~ 192 (192)
+...+..+.+ ++||.-|++
T Consensus 87 e~~~e~m~~~--t~gm~PG~~ 105 (105)
T COG0718 87 ETRKEKMGAL--TGGMPPGFK 105 (105)
T ss_pred HHHHHHHHHh--hccCCCCCC
Confidence 7777766643 446632443
No 22
>PRK00153 hypothetical protein; Validated
Probab=94.47 E-value=0.16 Score=38.63 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccc--c-C-CHHHH----HHHHHHHHHHHHHHHHHHH
Q 029494 99 VQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM--E-L-GAEKL----SLLVTEAYKDAHQKSVLAM 170 (192)
Q Consensus 99 mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l--~-~-D~E~L----edLI~aAvNdA~~Ka~e~~ 170 (192)
|-++++++|++++++.-+-.. ++|+....+-.+.|.|+-.-- + . |++.| .+.|-+.|-.|+.+|.+.+
T Consensus 8 m~~qaq~~q~~~~~~q~~l~~----~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~~A~n~A~~~~ 83 (104)
T PRK00153 8 LMKQAQQMQEKMQKMQEELAQ----MEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLILAAFNDALRKA 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 466788888888877655443 566666666778888865542 2 2 77777 5678888888888888888
Q ss_pred HHHHHhhhcCCCCCCCCC
Q 029494 171 KERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 171 ~e~m~~ltGGl~lP~Gl~ 188 (192)
++.+.+....+ .+||+
T Consensus 84 ~~~~~e~m~~~--~gg~~ 99 (104)
T PRK00153 84 EETMKEKMGKL--TGGLL 99 (104)
T ss_pred HHHHHHHHHHH--hCCCC
Confidence 88888887654 34664
No 23
>PRK14628 hypothetical protein; Provisional
Probab=94.23 E-value=0.76 Score=36.35 Aligned_cols=57 Identities=9% Similarity=0.170 Sum_probs=31.5
Q ss_pred cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029494 113 AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDL 177 (192)
Q Consensus 113 ~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~l 177 (192)
++|+.+..+..+.|+++..- + + |++.|+ +.|-..|-+|+.+|-+..++.+.+....+
T Consensus 56 VkV~~nG~~ei~~I~Idp~~--l--~-D~E~Le---DLIiaA~NdA~~ka~~~~~~~m~~~tggm 112 (118)
T PRK14628 56 VRIVATCDRRVKDIEIDEDL--K--E-DFETLK---DLLIAGMNEVMEKIEKRREEEMSKITQQF 112 (118)
T ss_pred EEEEEEcCceEEEEEECHHH--c--C-CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555555556666666543 2 2 555553 35555666666666666666666555443
No 24
>PRK14627 hypothetical protein; Provisional
Probab=93.90 E-value=0.28 Score=37.57 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC--ccccc-C-CHHHH----HHHHHHHHHHHHHHHHHHHH
Q 029494 100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT--EAAME-L-GAEKL----SLLVTEAYKDAHQKSVLAMK 171 (192)
Q Consensus 100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id--p~~l~-~-D~E~L----edLI~aAvNdA~~Ka~e~~~ 171 (192)
-++++++|++++++.-+-.. .+|+....+-.+.|.++ -.+++ . |++.| .+.+-..+-.|+..|.+..+
T Consensus 7 mkqaq~mQ~km~~~Q~el~~----~~veg~sggG~VkV~~~G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A~~k~~ 82 (100)
T PRK14627 7 MQMAQQMQRQMQKVQEELAA----TIVEGTAGGGAITVKMNGHREVQSITISPEVVDPDDVEMLQDLLLVAINDASRKAQ 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cEEEEEEcCCeEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777665544332 34555544556666663 33333 2 67766 33567777777777777777
Q ss_pred HHHHhhhcCCCCCCCCC
Q 029494 172 ERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 172 e~m~~ltGGl~lP~Gl~ 188 (192)
+.+.+..+.+ .+||+
T Consensus 83 ~~~~~~m~~~--tgg~~ 97 (100)
T PRK14627 83 QLAEERMQPL--TGGLK 97 (100)
T ss_pred HHHHHHHHHH--hcCCC
Confidence 7777666543 34555
No 25
>PF10904 DUF2694: Protein of unknown function (DUF2694); InterPro: IPR024426 This family of proteins with unknown function appears to be restricted to Mycobacterium spp.
Probab=93.45 E-value=0.41 Score=37.07 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=55.4
Q ss_pred cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029494 113 AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176 (192)
Q Consensus 113 ~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~ 176 (192)
-.|+....+|.|-|..-..|-+.+|.|+|.+++.|...|.+-|+..-.=|.=++.=.+.++|..
T Consensus 6 ~aF~~~~psg~IlVrs~rgG~~~~V~L~e~am~~d~~~LAq~Il~~AdVa~Lra~levR~eiva 69 (101)
T PF10904_consen 6 PAFDTVHPSGHILVRSCRGGYIHGVALSEAAMQTDAQTLAQEILLTADVAYLRAQLEVREEIVA 69 (101)
T ss_pred ccccccCCCCCEEEEeeccccceeeEecHHHhcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4588889999999999999999999999999988999999999888777777777666666654
No 26
>PRK14625 hypothetical protein; Provisional
Probab=93.43 E-value=0.35 Score=37.80 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 029494 92 VKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSV 167 (192)
Q Consensus 92 ~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~ 167 (192)
-+++++ +|+++....-+-. -++|+.+..+..++|+++..- |||+=.+-=-+.+-..+-+|+.++-+..+
T Consensus 15 Q~km~~-~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~l------l~~eD~e~LeDLI~aA~NdA~~k~~~~~~ 87 (109)
T PRK14625 15 QQKLAD-AQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESL------VQPGEGEVIADLIVAAHADAKKKLDAKQA 87 (109)
T ss_pred HHHHHH-HHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHH------cCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555 4667665543332 377778888888899988742 24332211134677889999999999999
Q ss_pred HHHHHHHHhhhc--CCCCCCCCC
Q 029494 168 LAMKERMSDLAQ--SLGMPQGLS 188 (192)
Q Consensus 168 e~~~e~m~~ltG--Gl~lP~Gl~ 188 (192)
+.+.+....+.+ . ++| |++
T Consensus 88 ~~m~~~tgg~~~~lP-G~~-~~~ 108 (109)
T PRK14625 88 QLMQEAAGPMAGLMG-GLP-GMK 108 (109)
T ss_pred HHHHHHhcCCCCCCC-CCC-CCC
Confidence 999988888841 2 567 765
No 27
>PRK14623 hypothetical protein; Provisional
Probab=93.14 E-value=0.31 Score=37.94 Aligned_cols=82 Identities=10% Similarity=0.132 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 029494 92 VKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSV 167 (192)
Q Consensus 92 ~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~ 167 (192)
-+++++ +|+++.+..-+-. -++|+.+..+..++|.++..- ++ |++.|+ +.|-..|-+|+.+|-+.++
T Consensus 14 Q~km~~-~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Idp~~--l~---D~E~Le---DLI~aAvn~A~~k~~~~~~ 84 (106)
T PRK14623 14 QQKVEA-TKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDEL--LE---DKEQLE---DYLVLTLNKAIEKATEINE 84 (106)
T ss_pred HHHHHH-HHHHHhccEEEEEECCceEEEEEEcCccEEEEEECHHH--cC---CHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 355555 4667775553333 377888888889999998743 33 888884 4778889999999999999
Q ss_pred HHHHHHHH-hh--hcCCC
Q 029494 168 LAMKERMS-DL--AQSLG 182 (192)
Q Consensus 168 e~~~e~m~-~l--tGGl~ 182 (192)
+.+.+... .+ ..||+
T Consensus 85 ~~m~~~t~~g~~~~PG~~ 102 (106)
T PRK14623 85 AELGAVAKEGMPDIPGMD 102 (106)
T ss_pred HHHHHHHhcCCCCCCCch
Confidence 99999884 55 24664
No 28
>PRK14621 hypothetical protein; Provisional
Probab=93.09 E-value=0.21 Score=39.03 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=62.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHH
Q 029494 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAA----AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVT 156 (192)
Q Consensus 81 m~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~----~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~ 156 (192)
||...+.|- +++++ +|+++++..-+-.. ++|+.+..+..+.|+++.. +.+ |++.++ +.+-..+-
T Consensus 9 mmkqaq~mQ---~km~~-~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~--lld---D~e~Le---DLI~aA~N 76 (111)
T PRK14621 9 MMKQIQQAG---EKMQD-VQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPE--IMD---DVEMVQ---DLVVAAVN 76 (111)
T ss_pred HHHHHHHHH---HHHHH-HHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHH--HcC---CHHHHH---HHHHHHHH
Confidence 334444444 45555 46677654433332 7888888888999999986 333 888874 46788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029494 157 EAYKDAHQKSVLAMKERMSDLA 178 (192)
Q Consensus 157 aAvNdA~~Ka~e~~~e~m~~lt 178 (192)
+|+.+|-+.+++.+.+....+-
T Consensus 77 dA~~ka~~~~~e~m~~~tgGm~ 98 (111)
T PRK14621 77 SALEESAKLAQEEISKVAGGMM 98 (111)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999998764
No 29
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=91.21 E-value=1 Score=32.96 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHH
Q 029494 93 KKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVL 168 (192)
Q Consensus 93 KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e 168 (192)
+++++ +|+++.+..-+-. .++|+....|..+.|+++...-= ..||+.| .+.|-+.+-+|..+|.++..+
T Consensus 9 ~~~~~-~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~---~~~~~~L---~~~I~~A~n~A~~~a~~~~~~ 81 (93)
T PF02575_consen 9 EKMEE-AQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALR---PLDPEEL---EDLIVEAVNDAQKKAREKAQE 81 (93)
T ss_dssp HHHHH-HHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGC---TS-HHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhc---cCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44444 4666665443332 36777777777888888876431 2566666 356778888888888888888
Q ss_pred HHHHHHHhh
Q 029494 169 AMKERMSDL 177 (192)
Q Consensus 169 ~~~e~m~~l 177 (192)
.+.+.++.+
T Consensus 82 ~~~~~~g~~ 90 (93)
T PF02575_consen 82 EMAELTGGL 90 (93)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhcCC
Confidence 888887765
No 30
>PRK14622 hypothetical protein; Provisional
Probab=91.13 E-value=1.2 Score=34.40 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeC--ccccc-C-CHHHH----HHHHHHHHHHHHHHHHHHHH
Q 029494 100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT--EAAME-L-GAEKL----SLLVTEAYKDAHQKSVLAMK 171 (192)
Q Consensus 100 Q~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Id--p~~l~-~-D~E~L----edLI~aAvNdA~~Ka~e~~~ 171 (192)
-++++++|++++++.-+=. ..+|+....|-.+.|.++ -.+.+ . |++.| .+.+-..+-.|+..|.+..+
T Consensus 7 mkqaq~mQ~~m~~~q~el~----~~~v~g~sggG~VkV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~aA~N~A~~k~~ 82 (103)
T PRK14622 7 MRQAKKLEKAMADAKEKLA----EIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVTAAVNAAVEKAR 82 (103)
T ss_pred HHHHHHHHHHHHHHHHHHh----ccEEEEEECCceEEEEEEcCceEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665543332 244555545556666663 23333 2 66666 34666667777777777777
Q ss_pred HHHHhhhcCCCCCCCCC
Q 029494 172 ERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 172 e~m~~ltGGl~lP~Gl~ 188 (192)
+.+.+..+.+ .+||+
T Consensus 83 ~~~~~~m~~~--tgg~~ 97 (103)
T PRK14622 83 TAADESMSKA--TGGIK 97 (103)
T ss_pred HHHHHHHHHH--hCCCC
Confidence 7666665543 33554
No 31
>PRK00587 hypothetical protein; Provisional
Probab=86.37 E-value=4.8 Score=30.93 Aligned_cols=80 Identities=9% Similarity=0.020 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHH---hccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 029494 93 KKAQMVVQVEAVRVQKEL---AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLA 169 (192)
Q Consensus 93 KkaQe~mQ~km~klQeeL---~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~ 169 (192)
+++++ +|+++.+..-+- --++|+.+..+..++|+++..- ++ .=|++.+ -+.|-..+-+|+..+-+..++.
T Consensus 15 ~km~~-~QeeL~~~~v~g~~gGlVkV~~nG~~~i~~i~Idp~l--ld-~eD~E~L---eDLI~aA~NdA~~k~~e~~~e~ 87 (99)
T PRK00587 15 NTMEK-KQKEFEEKEFDFDYKKYILIKIKGNLNIEKIEINKEL--ID-PEDKETL---QDMLREAINEAISITCKERDAI 87 (99)
T ss_pred HHHHH-HHHHHhccEEEEEcCCeEEEEEEcCccEEEEEECHHH--cC-CccHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 355555443221 1256666666677777777532 10 0123333 2355667777777777777777
Q ss_pred HHHHHHhhhc
Q 029494 170 MKERMSDLAQ 179 (192)
Q Consensus 170 ~~e~m~~ltG 179 (192)
+.+.|..++|
T Consensus 88 m~~~~~~~~~ 97 (99)
T PRK00587 88 MNSTIPKGTG 97 (99)
T ss_pred HHHhcCCCCC
Confidence 7777777665
No 32
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=82.97 E-value=4.3 Score=29.25 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=35.4
Q ss_pred EEEEEECCCeEEEEEe-cCcceEEEEeCcccccC-CHHHHHHHHH
Q 029494 114 EFDGYCEGELIKVTLS-GNQQPVRTEITEAAMEL-GAEKLSLLVT 156 (192)
Q Consensus 114 ~vtgsSggGlVkVtvn-G~gev~~V~Idp~~l~~-D~E~LedLI~ 156 (192)
+.+..-.+|.|.|.++ -+|.|++|+|.-+++.. +.+.|++.++
T Consensus 8 ~~~~rf~~G~v~v~~~V~~G~I~~i~i~gDf~~~~~i~~le~~L~ 52 (86)
T PF10437_consen 8 SKERRFPWGTVEVHLNVKNGIIKDIKIYGDFFGPEDIEELEEALI 52 (86)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEECBS-CCCHHHHHHHHT
T ss_pred eeeeEcCCceEEEEEEEECCEEEEEEEECCCCCchHHHHHHHHHH
Confidence 4556677899999888 68999999999999986 8999988774
No 33
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=80.97 E-value=4.9 Score=28.28 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=23.0
Q ss_pred CeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHH
Q 029494 122 ELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK 160 (192)
Q Consensus 122 GlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvN 160 (192)
-.|+|+++.+|.|.+++|..+- .-+.+-+.++.|+.
T Consensus 28 ~~V~i~i~~dG~v~~~~i~~sS---G~~~~D~av~~ai~ 63 (85)
T PF13103_consen 28 VTVRITIDPDGRVISVRIVKSS---GNPAFDAAVRRAIR 63 (85)
T ss_dssp EEEEEEE-TTSBEEEEEEEE-----S-HHHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEecCC---CCHHHHHHHHHHHH
Confidence 3588899999999999887654 33445555555555
No 34
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=63.57 E-value=16 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=23.8
Q ss_pred eEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHH
Q 029494 123 LIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK 160 (192)
Q Consensus 123 lVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvN 160 (192)
.|+++++.+|+|.+++|..+- ....|.+.++.|+.
T Consensus 13 ~v~~~i~~~G~v~~~~i~~ss---g~~~ld~~a~~av~ 47 (74)
T TIGR01352 13 VVRFTVDADGRVTSVSVLKSS---GDEALDRAALEAVR 47 (74)
T ss_pred EEEEEECCCCCEEEEEEEEcC---CChhHHHHHHHHHH
Confidence 489999999999999996433 22344455555543
No 35
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=62.94 E-value=71 Score=24.91 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=40.6
Q ss_pred EEEEECCCeEEEEEecCcceEEEEeCcc---ccc-------C-CHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 029494 115 FDGYCEGELIKVTLSGNQQPVRTEITEA---AME-------L-GAEKLSLLVTEAYKDAHQ---------KSVLAMKERM 174 (192)
Q Consensus 115 vtgsSggGlVkVtvnG~gev~~V~Idp~---~l~-------~-D~E~LedLI~aAvNdA~~---------Ka~e~~~e~m 174 (192)
++-...++.|+|+ -+.=+|.+++||++ .++ . +++.+.++...|-+++.+ +|++..+..+
T Consensus 62 i~~d~~~~~i~I~-LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~i~~~A~~~a~~~l 140 (157)
T PF14014_consen 62 IEVDEDGKTITIT-LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEAKKKIEQEANESGILEQAKENAEKAL 140 (157)
T ss_pred EEEcCCCCEEEEE-CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555578889999 68888999999943 332 2 445555555555444433 3455555555
Q ss_pred HhhhcCC
Q 029494 175 SDLAQSL 181 (192)
Q Consensus 175 ~~ltGGl 181 (192)
..+...+
T Consensus 141 ~~ll~~~ 147 (157)
T PF14014_consen 141 EQLLKSL 147 (157)
T ss_pred HHHHhhc
Confidence 5555443
No 36
>PRK10819 transport protein TonB; Provisional
Probab=58.54 E-value=23 Score=31.09 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred EEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 114 EFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 114 ~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
..+|+. .|+++|+.+|+|.+++|-.+- +...|.+.++.|+++.
T Consensus 178 g~eG~V---~V~f~I~~~G~V~~v~V~~Ss---g~~~fD~aal~Avr~w 220 (246)
T PRK10819 178 RIEGQV---KVKFDVDEDGRVDNVRILSAE---PRNMFEREVKQAMRKW 220 (246)
T ss_pred CCceEE---EEEEEECCCCCEEEEEEeccC---ChHHHHHHHHHHHHhc
Confidence 455655 489999999999999995432 4556777777776554
No 37
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=57.05 E-value=22 Score=24.17 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=28.0
Q ss_pred ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHH
Q 029494 112 AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAY 159 (192)
Q Consensus 112 ~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAv 159 (192)
...++|+.- |.++++.+|+|.+++|-.+.-.. .|.+.++.|+
T Consensus 11 ~~~~~G~v~---v~~~I~~~G~v~~~~v~~s~~~~---~l~~~a~~~v 52 (79)
T PF03544_consen 11 RRGIEGTVV---VEFTIDPDGRVSDVRVIQSSGPP---ILDEAALRAV 52 (79)
T ss_dssp HHTEEEEEE---EEEEEETTTEEEEEEEEEESSSS---CSHHHHHHHH
T ss_pred HCCCeEEEE---EEEEEeCCCCEEEEEEEEccCHH---HHHHHHHHHH
Confidence 334566653 99999999999999987665421 3444444444
No 38
>COG2968 Uncharacterized conserved protein [Function unknown]
Probab=54.35 E-value=52 Score=29.25 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=44.0
Q ss_pred hccEEEEEECCCeEEEEEe---------------cCcceEEEEeCcccccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 111 AAAEFDGYCEGELIKVTLS---------------GNQQPVRTEITEAAMELGAE-KLSLLVTEAYKDAHQKSVLAMKERM 174 (192)
Q Consensus 111 ~~~~vtgsSggGlVkVtvn---------------G~gev~~V~Idp~~l~~D~E-~LedLI~aAvNdA~~Ka~e~~~e~m 174 (192)
-+-+++|+.....|+|++. |--++-+|.+.- .|+| ..++...+|+.||+.||+...+...
T Consensus 111 ~~~~ltGY~asn~v~V~v~dl~klg~ilD~av~~Ganqi~gisf~~----~d~~a~~~~Ar~~Av~dA~~kA~~lA~a~g 186 (243)
T COG2968 111 GEPELTGYRASNTVEVTVRDLDKLGELLDEAVKAGANQINGISFGV----DDPEAAVQQARKAAVADAIAKAQALASALG 186 (243)
T ss_pred CCceEEEEEeeeeEEEEEcchhHHHHHHHHHHHcCccccCceeEee----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3678999999999999998 555555555421 1333 4477888888888888887666554
Q ss_pred Hhh
Q 029494 175 SDL 177 (192)
Q Consensus 175 ~~l 177 (192)
-++
T Consensus 187 v~l 189 (243)
T COG2968 187 VKL 189 (243)
T ss_pred Ccc
Confidence 444
No 39
>TIGR01966 RNasePH ribonuclease PH. This bacterial enzyme, ribonuclease PH, performs the final 3'-trimming and modification of tRNA precursors. This model is restricted absolutely to bacteria. Related families outside the model include proteins described as probable exosome complex exonucleases (rRNA processing) and polyribonucleotide nucleotidyltransferases (mRNA degradation). The most divergent member within the family is RNase PH from Deinococcus radiodurans.
Probab=52.23 E-value=64 Score=27.47 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=30.3
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
.++.+++.++++++|..++-+...-.-+.+.|.++|..|...+.
T Consensus 182 ~~~~l~l~~~~~~~i~~i~~~g~~~~~~~~~l~~~i~~a~~~~~ 225 (236)
T TIGR01966 182 ADVDMNVVMTGSGGFVEVQGTAEEGPFSRDELNKLLDLAKKGIR 225 (236)
T ss_pred cCceEEEEEcCCCCEEEEEecCCCCCcCHHHHHHHHHHHHHHHH
Confidence 45678999999999999888654322267677766666554444
No 40
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=50.55 E-value=1.2e+02 Score=23.74 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 92 VKKAQMVVQVEAV-RVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAM 170 (192)
Q Consensus 92 ~KkaQe~mQ~km~-klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~ 170 (192)
.+.+++ ||+++. -+|.++..-++.... -..|.|+++...-.|-+++=- +.+.=.+-+++|+|+|.--.....
T Consensus 8 ~rv~e~-i~~~l~~il~~eikDprl~~~~---Vt~V~vS~Dl~~A~Vyvt~l~---~~~~~~~~~~~~L~~A~g~ir~~l 80 (118)
T COG0858 8 KRVAEQ-IQKELAEILQREIKDPRLGLVT---VTDVEVSKDLSHAKVYVTVLG---DEESSKAEILAALNKAKGFIRSEL 80 (118)
T ss_pred HHHHHH-HHHHHHHHHHHHccCCCcCceE---EEEEEEcCCCceEEEEEEecC---CchhhHHHHHHHHHHhHHHHHHHH
Confidence 344444 566666 566677777776655 567888888888888777533 122223456777787776666544
Q ss_pred HHH
Q 029494 171 KER 173 (192)
Q Consensus 171 ~e~ 173 (192)
...
T Consensus 81 ~~~ 83 (118)
T COG0858 81 GKR 83 (118)
T ss_pred HHh
Confidence 443
No 41
>PRK14629 hypothetical protein; Provisional
Probab=49.79 E-value=51 Score=25.33 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hc----cEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHH
Q 029494 87 NLYETVKKAQMVVQVEAVRVQKEL---AA----AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAY 159 (192)
Q Consensus 87 ~L~~~~KkaQe~mQ~km~klQeeL---~~----~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAv 159 (192)
+|+++++++|+.|++--+++.+.. .. ++|+.+..+..++|+++..- ++ .=|++.+ .+.|-..|-+|+
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~~veg~aggGlVkV~~nG~~~v~~i~Idp~l--ld-~eD~e~L---eDLI~aAvNdA~ 80 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEEF--FD-DLDNEAL---EHMIKSAFNDAV 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEEecCCEEEEEEEcCccEEEEEECHHH--cC-cccHHHH---HHHHHHHHHHHH
Confidence 445555555544443333333322 22 56666666777788877643 10 0123444 246667777777
Q ss_pred HHHHHHHHHH
Q 029494 160 KDAHQKSVLA 169 (192)
Q Consensus 160 NdA~~Ka~e~ 169 (192)
.++-+.....
T Consensus 81 ~k~~e~~~~~ 90 (99)
T PRK14629 81 SKVKEEIKSK 90 (99)
T ss_pred HHHHHHHHHh
Confidence 7777765543
No 42
>PF04993 TfoX_N: TfoX N-terminal domain; InterPro: IPR007076 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found in association with the C-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain.; PDB: 2OD0_A.
Probab=43.21 E-value=24 Score=25.85 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=28.1
Q ss_pred HHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHH
Q 029494 108 KELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQ 164 (192)
Q Consensus 108 eeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~ 164 (192)
++.....++....++.+ ...=+.|.+++++ |.+.|..+|..|+..|.+
T Consensus 50 ~~~g~~p~~~~~~g~~~--------~~~y~~vp~~~~~-d~~~l~~w~~~al~~a~r 97 (97)
T PF04993_consen 50 EAPGARPFDYDKKGRRV--------MKGYYLVPEEILE-DDEELRQWIRLALAAAKR 97 (97)
T ss_dssp HHTT----EEEETTEEE--------E-SEEE--HHHHC--HHHHHHHHHHHHHHHH-
T ss_pred HhcCCcCCccccCCCcc--------cccEEEeCHHHcc-CHHHHHHHHHHHHHHhcC
Confidence 44455666666655443 1223677888885 999999999999998864
No 43
>PF15047 DUF4533: Protein of unknown function (DUF4533)
Probab=43.20 E-value=30 Score=30.45 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 83 GNMQNLYETVKKAQMVVQVEAVRVQKE 109 (192)
Q Consensus 83 gnm~~L~~~~KkaQe~mQ~km~klQee 109 (192)
.|+..|++.||++|.+++++-+++|++
T Consensus 51 d~~eqmi~~~kemQ~~vd~kd~~mq~e 77 (225)
T PF15047_consen 51 DNFEQMIKIFKEMQSVVDAKDKEMQKE 77 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 368888989999888888888888887
No 44
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=42.59 E-value=61 Score=26.97 Aligned_cols=47 Identities=6% Similarity=0.073 Sum_probs=33.1
Q ss_pred ECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHH
Q 029494 119 CEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKS 166 (192)
Q Consensus 119 SggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka 166 (192)
-|.|...|.|+++|.|..-.++|+-+= ..+.+++.|..=+.+|++++
T Consensus 105 PGSGSmlvimD~kGRiLtaslSPs~~i-Hk~~ie~~v~~E~~~AL~Ri 151 (154)
T PF11576_consen 105 PGSGSMLVIMDSKGRILTASLSPSHVI-HKKSIEDAVKKEMIEALKRI 151 (154)
T ss_dssp TTS-EEEEEEETTS-EEEEEEE--TTT-S---HHHHHHHHHHHHHHTT
T ss_pred CCCccEEEEEcCCCcEEeeccCchhhh-ccccHHHHHHHHHHHHHHHh
Confidence 467999999999999999999987663 67778888888888887653
No 45
>PRK00173 rph ribonuclease PH; Reviewed
Probab=41.10 E-value=1.4e+02 Score=25.54 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
.++.++|+++..++|..|+-+...-.-+.+.|.++|..|....
T Consensus 183 ~~~~l~v~~~~~~~i~~v~~~g~g~~~~~e~l~~~i~~A~~~~ 225 (238)
T PRK00173 183 AETDMNVVMTGSGGFVEVQGTAEGAPFSREELDALLDLAEKGI 225 (238)
T ss_pred CCceEEEEECCCCCEEEEEccCCCCCcCHHHHHHHHHHHHHHH
Confidence 4567888888888898888765432226666666665554433
No 46
>PRK11087 oxidative stress defense protein; Provisional
Probab=37.32 E-value=1.4e+02 Score=25.55 Aligned_cols=25 Identities=28% Similarity=0.049 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 149 EKLSLLVTEAYKDAHQKSVLAMKER 173 (192)
Q Consensus 149 E~LedLI~aAvNdA~~Ka~e~~~e~ 173 (192)
+...+++.+|+.+|.+||+...+..
T Consensus 148 ~~~~~al~~Av~dAr~kA~~~A~~~ 172 (231)
T PRK11087 148 EYKDKARKAAIKDAIQQAQSLAKGF 172 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446677888888888887655543
No 47
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=36.09 E-value=1.7e+02 Score=26.51 Aligned_cols=40 Identities=3% Similarity=-0.013 Sum_probs=31.4
Q ss_pred EEEECCCeEEEEEe-cCcceEEEEeCcccccC-CHHHHHHHH
Q 029494 116 DGYCEGELIKVTLS-GNQQPVRTEITEAAMEL-GAEKLSLLV 155 (192)
Q Consensus 116 tgsSggGlVkVtvn-G~gev~~V~Idp~~l~~-D~E~LedLI 155 (192)
+....+|.|+|.++ -+|.|+++.|.-+++.. +.+.|++.+
T Consensus 252 ~~r~~~G~v~i~l~v~~g~I~~~~i~gDf~~~~~~~~l~~~L 293 (324)
T TIGR00545 252 KKRFTAGGFELHVQVEKGKIVDCKFFGDFLSVADITPVTNRL 293 (324)
T ss_pred eEecCCCcEEEEEEEeCCEEEEEEEECCCCCcccHHHHHHHh
Confidence 34455788888877 46789999999999876 788887766
No 48
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=35.88 E-value=1.1e+02 Score=22.41 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=22.0
Q ss_pred ECCCeEEEEEecCcceEEEEeCccccc
Q 029494 119 CEGELIKVTLSGNQQPVRTEITEAAME 145 (192)
Q Consensus 119 SggGlVkVtvnG~gev~~V~Idp~~l~ 145 (192)
.....|+|...|...|.+|.+....+.
T Consensus 35 ~d~~Sl~V~~~g~~~i~~v~~~~~~~~ 61 (104)
T PF13600_consen 35 LDPDSLRVSGEGGVTILSVRFRRDFLP 61 (104)
T ss_pred cCCCcEEEEecCCEEEEEEEEEEeccC
Confidence 345678888888889999999988874
No 49
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=32.96 E-value=27 Score=26.02 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=19.7
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcC-C-CCCCC
Q 029494 138 EITEAAMELGAEKLSLLVTEAYKDAHQK----SVLAMKERMSDLAQS-L-GMPQG 186 (192)
Q Consensus 138 ~Idp~~l~~D~E~LedLI~aAvNdA~~K----a~e~~~e~m~~ltGG-l-~lP~G 186 (192)
++++++++.+ ..|++.|..-+.+.+++ -.......|..|... + +||||
T Consensus 12 kvs~EAv~~E-~eLd~~l~~rv~ei~~~~~~~~~~~l~~V~~~L~~e~ip~LPPG 65 (81)
T PF07830_consen 12 KVSEEAVKKE-AELDKYLEQRVEEIIEKSSEEENPDLVYVMRTLASEDIPGLPPG 65 (81)
T ss_dssp ---HHHHHHH-HHHHHHHHHHHHHHT----------HHHHHHHHHHTT-SS--TT
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhccCCCCcCC
Confidence 4566776532 24555555555555544 222333456666553 3 46666
No 50
>PF05504 Spore_GerAC: Spore germination B3/ GerAC like, C-terminal ; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response [].; GO: 0009847 spore germination, 0016020 membrane; PDB: 3N54_B.
Probab=32.49 E-value=1.4e+02 Score=23.46 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=19.9
Q ss_pred EEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 125 KVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMK 171 (192)
Q Consensus 125 kVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~Ka~e~~~ 171 (192)
+|.++.++.|.+..=...+.++ ..+.|++.+-+.+.+-+..+-+.++
T Consensus 71 ~i~i~~~~~i~e~~~~~~l~~~~~~~~le~~~~~~i~~~~~~~i~k~q 118 (171)
T PF05504_consen 71 TINIKLKGDIIEYQSNIDLFDPEEIKELEKQLEEEIKKEIQSLIKKMQ 118 (171)
T ss_dssp EEEEEEEEEEE----------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEeecCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555533333333 4556666666666655555554444
No 51
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=32.29 E-value=71 Score=27.37 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=28.7
Q ss_pred CeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 122 ELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 122 GlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
=.|+++|+-+|.|.+++|-.+- ....|.+..++|++.+.
T Consensus 182 V~V~f~i~~~G~v~~v~v~~SS---g~~~lD~aal~air~~~ 220 (244)
T COG0810 182 VKVKFTIDPDGNVTNVRVLKSS---GSPALDRAALEAIRKWR 220 (244)
T ss_pred EEEEEEECCCCCEeeeEEeecC---CcHHHHHHHHHHHHHhc
Confidence 3589999999999999996654 34456666666766653
No 52
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.84 E-value=2.5e+02 Score=25.25 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=55.8
Q ss_pred CCCCCccccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcc----
Q 029494 76 PSKAGILGNMQNLYETVKKAQM------------------VVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQ---- 133 (192)
Q Consensus 76 ~~~~Gm~gnm~~L~~~~KkaQe------------------~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~ge---- 133 (192)
.--||||.||.-+-.-+++..+ ++.++++++++-|.-+.==+.-++ |-++++...+
T Consensus 95 RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd--~l~ViDp~~e~iAv 172 (252)
T COG0052 95 RWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPD--VLFVIDPRKEKIAV 172 (252)
T ss_pred cccCccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcchhhccCCCC--EEEEeCCcHhHHHH
Confidence 4568899997765443444431 145677777777777776666677 6677776554
Q ss_pred ------------eEEEEeCccccc---C---CHHHHHHHHHHHHHHHHHHHHH
Q 029494 134 ------------PVRTEITEAAME---L---GAEKLSLLVTEAYKDAHQKSVL 168 (192)
Q Consensus 134 ------------v~~V~Idp~~l~---~---D~E~LedLI~aAvNdA~~Ka~e 168 (192)
+++..=||+.+| | |.-.==.||...+.+|.-+...
T Consensus 173 ~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~ 225 (252)
T COG0052 173 KEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRG 225 (252)
T ss_pred HHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 566667888876 2 3333334555555555555544
No 53
>PF11419 DUF3194: Protein of unknown function (DUF3194); InterPro: IPR024502 This family of proteins has no known function however the structure has been determined. The protein consists of two alpha-helices packed on the same side of a central beta-hairpin [].; PDB: 1PU1_A.
Probab=31.59 E-value=1.4e+02 Score=22.73 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHHHHhccEEEEEECCCeEEEEEec-CcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHH
Q 029494 106 VQKELAAAEFDGYCEGELIKVTLSG-NQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVL 168 (192)
Q Consensus 106 lQeeL~~~~vtgsSggGlVkVtvnG-~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e 168 (192)
+=+++.+.++..-- |+|+++= +.-.++|++.=.+=....-..+.++-+|+..|..+.++
T Consensus 26 If~~~~~sEV~DlD----Vtv~~~~~~~LdleVdVyl~~p~~s~~D~e~i~deA~~~Ay~avD~ 85 (87)
T PF11419_consen 26 IFSRLSQSEVKDLD----VTVRFEYGETLDLEVDVYLNVPDLSKADVETIADEAADAAYEAVDD 85 (87)
T ss_dssp HHTTS-TTTEEEEE----EEEEEEESSSEEEEEEEEEEE-TT-----TTHHHHHHHHHHHHHHH
T ss_pred HHHhcCHhhcccce----eEEEEecCCceEEEEEEEEecCcccccCHHHHHHHHHHHHHHHHHh
Confidence 34455666655442 7777774 33344433322221112233455677788877777665
No 54
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.98 E-value=54 Score=21.72 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEeCcccccC-----CHHHHHHHHHHHHHHHHHHHH
Q 029494 135 VRTEITEAAMEL-----GAEKLSLLVTEAYKDAHQKSV 167 (192)
Q Consensus 135 ~~V~Idp~~l~~-----D~E~LedLI~aAvNdA~~Ka~ 167 (192)
+.|+||++++++ +...-.++|..|+.+..+.-+
T Consensus 3 Tti~iDd~Ll~eA~~l~g~~tk~~~V~~ALr~~i~r~~ 40 (47)
T PF09957_consen 3 TTIDIDDELLAEAMRLTGTKTKKEAVNEALRELIRRRK 40 (47)
T ss_pred ceEeeCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999863 333445566666665555443
No 55
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=28.69 E-value=1.7e+02 Score=20.71 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHhccEEEEEECCCeEEEEEec-----CcceEEEEeCcccccC-CHHHHHHHHH
Q 029494 103 AVRVQKELAAAEFDGYCEGELIKVTLSG-----NQQPVRTEITEAAMEL-GAEKLSLLVT 156 (192)
Q Consensus 103 m~klQeeL~~~~vtgsSggGlVkVtvnG-----~gev~~V~Idp~~l~~-D~E~LedLI~ 156 (192)
++.++++|. +.+-.++.+|.|+|.-.+ ..-+ .+.||...+.. ++|.+.++|.
T Consensus 21 l~~l~~~l~-~~~g~~~~dg~~~l~~~~ClG~C~~gP-~~~v~~~~~~~~~~e~i~~il~ 78 (80)
T cd03081 21 AAHIKARLG-IDFHETTADGSVTLEPVYCLGLCACSP-AAMIDGEVHGRVDPEKFDALLA 78 (80)
T ss_pred HHHHHHHhC-CCCCCcCCCCeEEEEEeeecCccCCCC-EEEECCEEECCCCHHHHHHHHH
Confidence 445666664 334446778888887662 2223 34468888866 8888888774
No 56
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=28.51 E-value=1.5e+02 Score=25.68 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=28.1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029494 52 QFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAA 112 (192)
Q Consensus 52 ~~~~~~~~~lfgg~~~~~~~~~~~~~~~Gm~gnm~~L~~~~KkaQe~mQ~km~klQeeL~~ 112 (192)
...+|||..|.|--+.+= -+|.-.-=| =|.+++++|++ |+|+++-|+.|..
T Consensus 161 ~~~~LRPVNl~GwRAPGM----RAPRNTtQF-lM~q~YqdMrq-----qeklerqq~a~ra 211 (214)
T PF15482_consen 161 LSTLLRPVNLYGWRAPGM----RAPRNTTQF-LMNQKYQDMRQ-----QEKLERQQEALRA 211 (214)
T ss_pred ccccccccccccccCccc----cCCCChhHH-HHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 446788889988754431 111111000 15555544443 7788888877754
No 57
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=28.02 E-value=1.5e+02 Score=24.11 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHhccEEEEEECCCeEEEEEe-----cCcceEEEEeCcccccC-CHHHHHHHHHH
Q 029494 104 VRVQKELAAAEFDGYCEGELIKVTLS-----GNQQPVRTEITEAAMEL-GAEKLSLLVTE 157 (192)
Q Consensus 104 ~klQeeL~~~~vtgsSggGlVkVtvn-----G~gev~~V~Idp~~l~~-D~E~LedLI~a 157 (192)
+.++++|. ++.-.++.||.+++.-. +..-+ .+.||..++.. +++.+.++|..
T Consensus 96 ~~l~~~Lg-i~~gett~Dg~ftL~~~~ClG~C~~aP-~~~in~~~~~~lt~~~~~~il~~ 153 (156)
T PRK05988 96 AHAKARLG-IDFHQTTADGAVTLEPVYCLGLCACSP-AAMLDGEVHGRLDPQRLDALLAE 153 (156)
T ss_pred HHHHHHhC-CCCCCcCCCCeEEEEeeeecCccCCCC-eEEECCEEeCCCCHHHHHHHHHH
Confidence 34566664 55666888999888754 23333 57889999876 89998887643
No 58
>PF04205 FMN_bind: FMN-binding domain; InterPro: IPR007329 This conserved region includes the FMN-binding site of the NqrC protein [] as well as the NosR and NirI regulatory proteins.; GO: 0010181 FMN binding, 0016020 membrane; PDB: 3LWX_A 2KZX_A 3DCZ_A 3O6U_D.
Probab=27.75 E-value=65 Score=22.33 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.0
Q ss_pred eEEEEEecCcceEEEEeCc
Q 029494 123 LIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 123 lVkVtvnG~gev~~V~Idp 141 (192)
.|.|+++.+++|++|+|+.
T Consensus 7 ~v~v~i~~dg~I~~v~~~~ 25 (81)
T PF04205_consen 7 TVTVTIDKDGKITDVKILE 25 (81)
T ss_dssp EEEEEEETTTEEEEEEEEE
T ss_pred EEEEEEeCCCEEEEEEEee
Confidence 3667778889999999987
No 59
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=26.46 E-value=46 Score=31.55 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=40.8
Q ss_pred HHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHH
Q 029494 105 RVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVT 156 (192)
Q Consensus 105 klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~ 156 (192)
.+++++--+.+-=+++.|+|||+.+-...=..|++|.+.++- ....|++.+.
T Consensus 265 H~~ARfvi~kv~lEageglvkie~T~g~Dd~~vrLDrSkI~svG~pal~~FL~ 317 (417)
T KOG3675|consen 265 HMRARFVIMKVLLEAGEGLVKIEPTTGSDDARVRLDRSKIDSVGRPALEDFLR 317 (417)
T ss_pred hhhhhhhhhhhHHHhcCCeeEeeccCCCcceeeeecHhhhhhcccHhHHHHHH
Confidence 345666666676778899999999988888888999999986 7777777654
No 60
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=26.45 E-value=57 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccEE
Q 029494 93 KKAQMVVQVEAVRVQKELAAAEF 115 (192)
Q Consensus 93 KkaQe~mQ~km~klQeeL~~~~v 115 (192)
+.++| +|+++++++++|.+.-+
T Consensus 68 eA~~e-L~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 68 EAAKE-LQKEIKEAKADLRKKGV 89 (91)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCC
Confidence 34555 78899999999988755
No 61
>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-type 2
Probab=26.18 E-value=50 Score=29.69 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=45.4
Q ss_pred EEEECCCeEEEEEec-CcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 029494 116 DGYCEGELIKVTLSG-NQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGLSEG 190 (192)
Q Consensus 116 tgsSggGlVkVtvnG-~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~ltGGl~lP~Gl~~g 190 (192)
+|..|...+++.=.. .+-|.+|.=+|+ +++..|-+-|..+++.|.+++.. ..+.=++|+|++| |+..|
T Consensus 31 ~G~vGcD~~~~~~~~~~~PlaElRP~P~---~~P~~L~~~i~~~l~~A~~~i~~---~~l~W~AG~mP~~-gfp~G 99 (261)
T PF14395_consen 31 DGPVGCDARRLRGRRGIYPLAELRPAPS---PDPAELFENIRRALREAARRIPD---RSLEWLAGSMPFP-GFPLG 99 (261)
T ss_pred CCccCccceeecCccccccceecCCCCC---CCHHHHHHHHHHHHHHHHHhCCC---CCceEecCCCCCC-CCCcC
Confidence 455555555543333 344555554443 38889999999999999887766 4566678999888 87544
No 62
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=26.07 E-value=82 Score=22.73 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=25.5
Q ss_pred EEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 029494 136 RTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLA 169 (192)
Q Consensus 136 ~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~ 169 (192)
+.+|+++++..-.+.|.-.|.+|+.+|...++..
T Consensus 17 ~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e 50 (72)
T PF09415_consen 17 KTKISKDALKLSAEYLRIFVREAVARAAEQAEAE 50 (72)
T ss_dssp T-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678888887678888889999998888866553
No 63
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=25.08 E-value=91 Score=24.53 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=18.2
Q ss_pred EEECCCeEEEEEecCcceEEEEeC
Q 029494 117 GYCEGELIKVTLSGNQQPVRTEIT 140 (192)
Q Consensus 117 gsSggGlVkVtvnG~gev~~V~Id 140 (192)
-.|+.|.|+|++.++|+..++.-.
T Consensus 50 l~Sg~Gkv~i~v~~ngk~s~l~~~ 73 (107)
T PF07472_consen 50 LNSGSGKVRIEVTANGKPSKLRSS 73 (107)
T ss_dssp EE-TTSEEEEEEEETTEE-EEEEE
T ss_pred EecCCCeEEEEEEeCCccccceee
Confidence 457899999999999988776543
No 64
>PF04402 SIMPL: Protein of unknown function (DUF541); InterPro: IPR007497 Members of this family have so far been found in bacteria and mouse UniProtKB/Swiss-Prot or UniProtKB/TrEMBL entries. However possible family members have also been identified in translated rat (GenBank:AW144450) and human (GenBank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity []. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerisation. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics []. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.
Probab=25.01 E-value=2.2e+02 Score=22.67 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029494 152 SLLVTEAYKDAHQKSVLAMKER 173 (192)
Q Consensus 152 edLI~aAvNdA~~Ka~e~~~e~ 173 (192)
.+++..|+.+|.++|+...+..
T Consensus 127 ~e~~~~A~~~A~~kA~~lA~~~ 148 (210)
T PF04402_consen 127 KEALKEAIKDAKEKAEALAKAL 148 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888887765544
No 65
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=25.00 E-value=2.5e+02 Score=21.38 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcc------EEEEEECCCeEEEEEecCcceE-E-------EEe-------------CcccccC-CHHHH
Q 029494 100 QVEAVRVQKELAAA------EFDGYCEGELIKVTLSGNQQPV-R-------TEI-------------TEAAMEL-GAEKL 151 (192)
Q Consensus 100 Q~km~klQeeL~~~------~vtgsSggGlVkVtvnG~gev~-~-------V~I-------------dp~~l~~-D~E~L 151 (192)
.+-+..+++.|+.. .++.+..+|.++|++...++++ + |-+ +..-++. +.+.|
T Consensus 11 d~~l~~i~~~le~~~d~~~~d~d~e~~~gVLti~~~~~~~~VINkQ~p~~QIWlsSpisG~~hf~~~~~~W~~~r~g~~l 90 (109)
T PF01491_consen 11 DETLDSIEDALEELDDEQDADIDVERSGGVLTIEFPDGGQYVINKQPPNRQIWLSSPISGPFHFDYDDGKWIDTRDGEEL 90 (109)
T ss_dssp HHHHHHHHHHHHTCTTSSSSTEEEEEETTEEEEEETTSEEEEEEEECCCTEEEEEETTTEEEEEEEESSSEEETTTTEBH
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEccCCEEEEEECCCCEEEEeCCCHHHHHHHhcccCCceEEEEcCCEEEECCCCchH
Confidence 44566677777733 5778888999999995444332 1 112 1222223 66677
Q ss_pred HHHHHHHHHHHH
Q 029494 152 SLLVTEAYKDAH 163 (192)
Q Consensus 152 edLI~aAvNdA~ 163 (192)
.+++.+.+++..
T Consensus 91 ~~~L~~el~~~~ 102 (109)
T PF01491_consen 91 FELLEEELSQQL 102 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776653
No 66
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=24.70 E-value=2.4e+02 Score=24.18 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=34.6
Q ss_pred EEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHH
Q 029494 116 DGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVL 168 (192)
Q Consensus 116 tgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e 168 (192)
++-.-+.+|++.-+.+|+|+.++.|-..+. .|..-+..++++.+++.++
T Consensus 59 ~~~~y~dlI~i~kd~~G~I~~iq~nT~~~N----~i~s~~~~~vq~~L~~l~~ 107 (204)
T TIGR02832 59 QGFDYNDLIEIETDENGKITLIQANTLLLN----KLASNITLRVQEKLNELGE 107 (204)
T ss_pred cCCCHHHEEEEEECCCCcEEEEEcCHHHHH----HHHHHHHHHHHHHHHHhhc
Confidence 344557899999999999999999887774 3334455555555555544
No 67
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=24.68 E-value=3.7e+02 Score=24.55 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=37.9
Q ss_pred EEEEECCCeEEEEEe-cCcceEEEEeCcccccC-CHHHHHHHHH------HHHHHHHHHH
Q 029494 115 FDGYCEGELIKVTLS-GNQQPVRTEITEAAMEL-GAEKLSLLVT------EAYKDAHQKS 166 (192)
Q Consensus 115 vtgsSggGlVkVtvn-G~gev~~V~Idp~~l~~-D~E~LedLI~------aAvNdA~~Ka 166 (192)
.+..-..|.|.|.++ =+|.|.+++|--+.+.. +.+.|++.+. +++.+++.+.
T Consensus 256 ~~~~f~~G~v~i~~~v~~g~I~~~~i~gD~~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~ 315 (338)
T PRK03822 256 LDERFTWGGVELHFDVEKGHITRAQIFTDSLNPAPLEALAGRLQGCLYRADALQQECEAL 315 (338)
T ss_pred eeccccCCcEEEEEEEECCEEEEEEEECCCCCcccHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 344455788999888 47889999998888765 8888887762 5555555544
No 68
>PF02482 Ribosomal_S30AE: Sigma 54 modulation protein / S30EA ribosomal protein; InterPro: IPR003489 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the sigma-54 modulation protein family and the S30Ae family of ribosomal proteins which includes the light-repressed protein (lrtA) [].; GO: 0005488 binding, 0044238 primary metabolic process; PDB: 1L4S_A 1VOX_a 1VOV_a 3V2E_Y 3V2C_Y 1N3G_A 1VOS_a 1VOZ_a 1VOQ_a 1IMU_A ....
Probab=24.29 E-value=2.6e+02 Score=19.71 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHh---ccEEEEEE---CCCe--EEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 99 VQVEAVRVQKELA---AAEFDGYC---EGEL--IKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAM 170 (192)
Q Consensus 99 mQ~km~klQeeL~---~~~vtgsS---ggGl--VkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~ 170 (192)
+.++++++..-+. .+.|+-+. +++. |.+++...|....++=. .+| +-+||.+|..+++.++
T Consensus 19 i~~kl~kl~~~~~~i~~~~V~l~~~~~~~~~~~v~i~i~~~~~~l~a~~~----~~d-------~~~Aid~a~dkl~rql 87 (97)
T PF02482_consen 19 IEEKLEKLERFFDDIIEAHVTLSKEKSEGKGYRVEITIHVPGHVLVAEES----AED-------LYAAIDEAFDKLERQL 87 (97)
T ss_dssp HHHHHHHHHTTSSC-SEEEEEEEEE--ETTEEEEEEEEEETTEEEEEEEE----ESS-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeeEEEEEEEeeccCCCEEEEEEEEeCCceEEEEEe----cCC-------HHHHHHHHHHHHHHHH
Confidence 5666666555443 44555554 3333 34444444443333221 113 4566666666666666
Q ss_pred HHHHH
Q 029494 171 KERMS 175 (192)
Q Consensus 171 ~e~m~ 175 (192)
.....
T Consensus 88 ~k~k~ 92 (97)
T PF02482_consen 88 RKYKE 92 (97)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 69
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=24.17 E-value=2e+02 Score=19.24 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=26.2
Q ss_pred ECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHH
Q 029494 119 CEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAY 159 (192)
Q Consensus 119 SggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAv 159 (192)
..++.+++.+++++++.-+........-+.+.|.+.|..|.
T Consensus 26 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~i~~A~ 66 (68)
T PF03725_consen 26 LSDSSLTLAVDGTGNICTLQKSGGGSELSEDQLEEAIELAK 66 (68)
T ss_dssp HSSEEEEEEEETTSSEEEEEEEEESSEEEHHHHHHHHHHHH
T ss_pred hcCCcEEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 34567899999999886666554442125666666665554
No 70
>COG4572 ChaB Putative cation transport regulator [General function prediction only]
Probab=23.87 E-value=1e+02 Score=22.79 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 029494 147 GAEKLSLLVTEAYKDAHQK 165 (192)
Q Consensus 147 D~E~LedLI~aAvNdA~~K 165 (192)
=++.+++++.+|||.|+..
T Consensus 17 lp~haqdiy~~afnsA~e~ 35 (76)
T COG4572 17 LPSHAQDIYKAAFNSAWEQ 35 (76)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 5778999999999999995
No 71
>PLN02412 probable glutathione peroxidase
Probab=23.17 E-value=1.3e+02 Score=23.99 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=26.9
Q ss_pred EEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 124 IKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 124 VkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
.++.++.+|+|+...+.+. +.+.|+..|...+++|
T Consensus 133 ~tflId~~G~vv~~~~g~~----~~~~l~~~i~~~l~~~ 167 (167)
T PLN02412 133 TKFLVSKEGKVVQRYAPTT----SPLKIEKDIQNLLGQA 167 (167)
T ss_pred eeEEECCCCcEEEEECCCC----CHHHHHHHHHHHHhhC
Confidence 5799999999999886322 6677888888777764
No 72
>COG5618 Predicted periplasmic lipoprotein [General function prediction only]
Probab=22.39 E-value=1e+02 Score=26.61 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.6
Q ss_pred EECCCeEEEEEecCcceEEEEeCcccc
Q 029494 118 YCEGELIKVTLSGNQQPVRTEITEAAM 144 (192)
Q Consensus 118 sSggGlVkVtvnG~gev~~V~Idp~~l 144 (192)
.+-.|.|+|-++|+|...+|+|.|.+-
T Consensus 103 ksr~g~v~vd~dgdga~~RvQiGPavr 129 (206)
T COG5618 103 KSREGLVRVDIDGDGADARVQIGPAVR 129 (206)
T ss_pred ccccceEEEecCCCcceEEEEeccccc
Confidence 355899999999999999999999875
No 73
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=22.19 E-value=3.5e+02 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhc----cEEEEEECCCeEEEEEecCcce
Q 029494 101 VEAVRVQKELAA----AEFDGYCEGELIKVTLSGNQQP 134 (192)
Q Consensus 101 ~km~klQeeL~~----~~vtgsSggGlVkVtvnG~gev 134 (192)
+-+..+.+.|+. ..++....+|.+++++...+++
T Consensus 12 ~~l~~i~~~ld~~~~~~d~D~e~~~gVLti~f~~~~~~ 49 (105)
T cd00503 12 DLLLKIEDTLEEQDDDADIDVETQGGVLTLTFGNGSTI 49 (105)
T ss_pred HHHHHHHHHHHhcCcccCEeeeccCCEEEEEECCCCEE
Confidence 344555555553 4577778899999999854443
No 74
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=21.71 E-value=1e+02 Score=23.35 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhccEEEEEECCCeEEEEEecCcce
Q 029494 101 VEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQP 134 (192)
Q Consensus 101 ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev 134 (192)
..++++.+.-..+.++....+|.+++++...+++
T Consensus 15 ~~le~~~d~~~d~~~D~e~~~gVLti~~~~~~~~ 48 (97)
T TIGR03422 15 DKLEELGESRPDLDFDVEYSSGVLTLELPSVGTY 48 (97)
T ss_pred HHHHhhcccccccccccccCCCEEEEEECCCCEE
Confidence 3444333333344447778899999999765554
No 75
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.67 E-value=3e+02 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.0
Q ss_pred CCeEEEE-EecCcceEEEEeCccc
Q 029494 121 GELIKVT-LSGNQQPVRTEITEAA 143 (192)
Q Consensus 121 gGlVkVt-vnG~gev~~V~Idp~~ 143 (192)
+|..+|. .+.+|+..+|.|||.=
T Consensus 53 ~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 53 DGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred CCEEEEEEEECCCCEEEEEEcCCC
Confidence 5568888 9999999999999964
No 76
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.67 E-value=1.2e+02 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 029494 89 YETVKKAQMVVQVEAVRVQKELAAA 113 (192)
Q Consensus 89 ~~~~KkaQe~mQ~km~klQeeL~~~ 113 (192)
.+.=+++.+ .+++++++++|+++.
T Consensus 44 ~~~r~~~~~-~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRR-LRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 444455555 588888888888765
No 77
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=21.36 E-value=3.7e+02 Score=20.62 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHh---ccEEEEEECCCeEEEEEecCcc
Q 029494 103 AVRVQKELA---AAEFDGYCEGELIKVTLSGNQQ 133 (192)
Q Consensus 103 m~klQeeL~---~~~vtgsSggGlVkVtvnG~ge 133 (192)
+..+.+.|+ ...++....+|.+++++...++
T Consensus 14 l~~ie~~ld~~~~~d~D~e~~~gVLti~f~~~~~ 47 (105)
T PRK00446 14 WQAIEEQLDDDGDADIDCERNGGVLTLTFENGSK 47 (105)
T ss_pred HHHHHHHHHhccCCCeeeeccCCEEEEEECCCCE
Confidence 334444444 3568888889999999875544
No 78
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=20.81 E-value=95 Score=22.50 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=11.0
Q ss_pred ceEEEEeCcccccC
Q 029494 133 QPVRTEITEAAMEL 146 (192)
Q Consensus 133 ev~~V~Idp~~l~~ 146 (192)
+-+.|+||++++..
T Consensus 3 ~~vnltld~dll~~ 16 (72)
T PRK13710 3 QRITVTVDSDSYQL 16 (72)
T ss_pred cceEeeECHHHHHH
Confidence 35788999999963
No 79
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=3.9e+02 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=25.7
Q ss_pred ECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHH
Q 029494 119 CEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEA 158 (192)
Q Consensus 119 SggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aA 158 (192)
..+|..+||+|-+++|.-|+=.-.++- +...|+.-...|
T Consensus 216 ~~dGs~vVt~Nk~rEVc~i~k~G~~~~-~~~~i~~C~k~A 254 (291)
T KOG1614|consen 216 VMDGSMVVTMNKNREVCAIQKSGGEIL-DESVIERCYKLA 254 (291)
T ss_pred ccCceEEEEEcCCccEEEEecCCCccc-cHHHHHHHHHHH
Confidence 458999999999999998875544431 443333333333
No 80
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=20.67 E-value=2.2e+02 Score=20.05 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=45.0
Q ss_pred ECCCeEEEEEecCcceEEEEeCcccccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029494 119 CEGELIKVTLSGNQQPVRTEITEAAMEL---GAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176 (192)
Q Consensus 119 SggGlVkVtvnG~gev~~V~Idp~~l~~---D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~ 176 (192)
.....|+..+.-+|..+.+.|.-++|+. ....-++-.+++|.+-...+++.++..+..
T Consensus 12 ~~~~~V~F~a~~~g~~i~C~Is~~aL~~~~~~~~~~~~~~l~~F~~~R~~Ie~~Ae~~i~~ 72 (83)
T PF07369_consen 12 EARQAVRFPAQVDGMQIRCAISAEALEDLFGARGASEEDLLAAFDRHRFDIEEAAERLIEQ 72 (83)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEHHHHHHHHTS---SHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEEECCEEEEEEEeHHHHHhhhCcCCCCHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 4467899999999999999999999863 234446678888988888888888887776
No 81
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.60 E-value=1.7e+02 Score=21.03 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELA 111 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~ 111 (192)
.+..++.+..++.+ +++++.++++.|.
T Consensus 63 ~i~~~l~l~~~~~~-l~~~l~~l~~~~~ 89 (91)
T cd04766 63 GVKRILELEEELAE-LRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 35566666677777 6888888877764
Done!